Multiple sequence alignment - TraesCS5B01G494900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G494900 | chr5B | 100.000 | 3747 | 0 | 0 | 1 | 3747 | 662643455 | 662647201 | 0.000000e+00 | 6920.0 |
1 | TraesCS5B01G494900 | chr5D | 92.420 | 2612 | 137 | 26 | 794 | 3364 | 526864407 | 526866998 | 0.000000e+00 | 3670.0 |
2 | TraesCS5B01G494900 | chr5D | 90.722 | 485 | 35 | 4 | 176 | 652 | 526862108 | 526862590 | 4.080000e-179 | 638.0 |
3 | TraesCS5B01G494900 | chr5D | 90.873 | 252 | 14 | 3 | 1 | 244 | 526854864 | 526855114 | 2.790000e-86 | 329.0 |
4 | TraesCS5B01G494900 | chr5D | 88.444 | 225 | 21 | 4 | 3363 | 3584 | 526867288 | 526867510 | 2.220000e-67 | 267.0 |
5 | TraesCS5B01G494900 | chr5D | 87.013 | 154 | 6 | 9 | 665 | 804 | 526862572 | 526862725 | 1.080000e-35 | 161.0 |
6 | TraesCS5B01G494900 | chr5A | 96.184 | 1258 | 46 | 2 | 1864 | 3120 | 654065285 | 654066541 | 0.000000e+00 | 2056.0 |
7 | TraesCS5B01G494900 | chr5A | 96.218 | 1084 | 36 | 3 | 794 | 1877 | 654064188 | 654065266 | 0.000000e+00 | 1770.0 |
8 | TraesCS5B01G494900 | chr5A | 89.366 | 489 | 43 | 5 | 171 | 652 | 654061260 | 654061746 | 1.150000e-169 | 606.0 |
9 | TraesCS5B01G494900 | chr5A | 84.842 | 442 | 51 | 10 | 3158 | 3586 | 654066698 | 654067136 | 7.430000e-117 | 431.0 |
10 | TraesCS5B01G494900 | chr5A | 87.170 | 265 | 23 | 6 | 1 | 256 | 654060997 | 654061259 | 1.320000e-74 | 291.0 |
11 | TraesCS5B01G494900 | chr7D | 79.903 | 617 | 109 | 13 | 11 | 619 | 405877289 | 405877898 | 4.440000e-119 | 438.0 |
12 | TraesCS5B01G494900 | chr7D | 77.796 | 617 | 112 | 16 | 15 | 619 | 475154795 | 475155398 | 1.280000e-94 | 357.0 |
13 | TraesCS5B01G494900 | chr7D | 77.444 | 133 | 28 | 2 | 3233 | 3364 | 102546324 | 102546455 | 1.120000e-10 | 78.7 |
14 | TraesCS5B01G494900 | chr7D | 100.000 | 32 | 0 | 0 | 15 | 46 | 106127115 | 106127146 | 4.040000e-05 | 60.2 |
15 | TraesCS5B01G494900 | chr7B | 78.998 | 619 | 114 | 14 | 11 | 619 | 413931216 | 413931828 | 3.480000e-110 | 409.0 |
16 | TraesCS5B01G494900 | chr2D | 80.443 | 542 | 98 | 6 | 76 | 611 | 469369510 | 469368971 | 1.250000e-109 | 407.0 |
17 | TraesCS5B01G494900 | chr2D | 81.061 | 132 | 23 | 2 | 3234 | 3364 | 13121572 | 13121702 | 1.840000e-18 | 104.0 |
18 | TraesCS5B01G494900 | chr3B | 78.584 | 579 | 101 | 17 | 49 | 616 | 144483120 | 144483686 | 9.890000e-96 | 361.0 |
19 | TraesCS5B01G494900 | chr3B | 81.481 | 189 | 31 | 4 | 12 | 197 | 654306695 | 654306508 | 6.480000e-33 | 152.0 |
20 | TraesCS5B01G494900 | chr3B | 80.645 | 124 | 23 | 1 | 3237 | 3359 | 736943761 | 736943638 | 1.110000e-15 | 95.3 |
21 | TraesCS5B01G494900 | chr3A | 77.340 | 609 | 115 | 17 | 23 | 624 | 691957758 | 691957166 | 4.640000e-89 | 339.0 |
22 | TraesCS5B01G494900 | chr3A | 79.389 | 131 | 25 | 2 | 3234 | 3363 | 451154762 | 451154891 | 1.430000e-14 | 91.6 |
23 | TraesCS5B01G494900 | chr2A | 78.812 | 505 | 98 | 6 | 7 | 502 | 759321768 | 759322272 | 7.760000e-87 | 331.0 |
24 | TraesCS5B01G494900 | chr2A | 77.318 | 604 | 105 | 17 | 23 | 621 | 66767769 | 66767193 | 1.000000e-85 | 327.0 |
25 | TraesCS5B01G494900 | chr2A | 75.850 | 588 | 103 | 24 | 23 | 602 | 661581317 | 661581873 | 2.870000e-66 | 263.0 |
26 | TraesCS5B01G494900 | chr6A | 80.769 | 130 | 23 | 2 | 3237 | 3364 | 3768865 | 3768994 | 2.380000e-17 | 100.0 |
27 | TraesCS5B01G494900 | chrUn | 82.524 | 103 | 17 | 1 | 3257 | 3359 | 28730558 | 28730457 | 5.150000e-14 | 89.8 |
28 | TraesCS5B01G494900 | chr7A | 80.342 | 117 | 20 | 3 | 3238 | 3352 | 516155923 | 516155808 | 6.670000e-13 | 86.1 |
29 | TraesCS5B01G494900 | chr1B | 77.698 | 139 | 25 | 6 | 3237 | 3370 | 148220788 | 148220925 | 3.100000e-11 | 80.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G494900 | chr5B | 662643455 | 662647201 | 3746 | False | 6920.0 | 6920 | 100.00000 | 1 | 3747 | 1 | chr5B.!!$F1 | 3746 |
1 | TraesCS5B01G494900 | chr5D | 526862108 | 526867510 | 5402 | False | 1184.0 | 3670 | 89.64975 | 176 | 3584 | 4 | chr5D.!!$F2 | 3408 |
2 | TraesCS5B01G494900 | chr5A | 654060997 | 654067136 | 6139 | False | 1030.8 | 2056 | 90.75600 | 1 | 3586 | 5 | chr5A.!!$F1 | 3585 |
3 | TraesCS5B01G494900 | chr7D | 405877289 | 405877898 | 609 | False | 438.0 | 438 | 79.90300 | 11 | 619 | 1 | chr7D.!!$F3 | 608 |
4 | TraesCS5B01G494900 | chr7D | 475154795 | 475155398 | 603 | False | 357.0 | 357 | 77.79600 | 15 | 619 | 1 | chr7D.!!$F4 | 604 |
5 | TraesCS5B01G494900 | chr7B | 413931216 | 413931828 | 612 | False | 409.0 | 409 | 78.99800 | 11 | 619 | 1 | chr7B.!!$F1 | 608 |
6 | TraesCS5B01G494900 | chr2D | 469368971 | 469369510 | 539 | True | 407.0 | 407 | 80.44300 | 76 | 611 | 1 | chr2D.!!$R1 | 535 |
7 | TraesCS5B01G494900 | chr3B | 144483120 | 144483686 | 566 | False | 361.0 | 361 | 78.58400 | 49 | 616 | 1 | chr3B.!!$F1 | 567 |
8 | TraesCS5B01G494900 | chr3A | 691957166 | 691957758 | 592 | True | 339.0 | 339 | 77.34000 | 23 | 624 | 1 | chr3A.!!$R1 | 601 |
9 | TraesCS5B01G494900 | chr2A | 759321768 | 759322272 | 504 | False | 331.0 | 331 | 78.81200 | 7 | 502 | 1 | chr2A.!!$F2 | 495 |
10 | TraesCS5B01G494900 | chr2A | 66767193 | 66767769 | 576 | True | 327.0 | 327 | 77.31800 | 23 | 621 | 1 | chr2A.!!$R1 | 598 |
11 | TraesCS5B01G494900 | chr2A | 661581317 | 661581873 | 556 | False | 263.0 | 263 | 75.85000 | 23 | 602 | 1 | chr2A.!!$F1 | 579 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
267 | 374 | 0.105039 | GGCGGATCTCGTGGAATTCT | 59.895 | 55.0 | 5.23 | 0.0 | 41.72 | 2.40 | F |
699 | 821 | 0.107993 | ACATGCCAGATCGGTCACAG | 60.108 | 55.0 | 0.00 | 0.0 | 36.97 | 3.66 | F |
1423 | 3899 | 0.193574 | AGAAGGTGAAGGTCCCCTCA | 59.806 | 55.0 | 0.00 | 0.0 | 30.89 | 3.86 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1386 | 3862 | 0.601046 | CTGCTCTGCAACAACCGAGA | 60.601 | 55.0 | 2.78 | 0.0 | 38.41 | 4.04 | R |
2469 | 4981 | 0.767446 | CCTCATCAGGATCTGGGCCT | 60.767 | 60.0 | 4.53 | 0.0 | 43.65 | 5.19 | R |
2962 | 5475 | 0.165079 | ACGAACGCAAAGCCAATACG | 59.835 | 50.0 | 0.00 | 0.0 | 0.00 | 3.06 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
138 | 144 | 1.212935 | AGGGTTTGTGTCTTGCTCAGT | 59.787 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
173 | 179 | 1.617357 | ACGACTCCCTGTAGTTGGAAC | 59.383 | 52.381 | 0.00 | 0.00 | 35.50 | 3.62 |
262 | 369 | 2.752640 | TTCGGCGGATCTCGTGGA | 60.753 | 61.111 | 7.21 | 1.64 | 41.72 | 4.02 |
267 | 374 | 0.105039 | GGCGGATCTCGTGGAATTCT | 59.895 | 55.000 | 5.23 | 0.00 | 41.72 | 2.40 |
269 | 376 | 1.212616 | CGGATCTCGTGGAATTCTGC | 58.787 | 55.000 | 5.23 | 0.00 | 0.00 | 4.26 |
325 | 444 | 2.028045 | GTGCGTCTATGTTCATGTGTCG | 59.972 | 50.000 | 0.00 | 0.82 | 0.00 | 4.35 |
511 | 630 | 0.244994 | CGCTCCAGTGCTTGTAGTCT | 59.755 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
699 | 821 | 0.107993 | ACATGCCAGATCGGTCACAG | 60.108 | 55.000 | 0.00 | 0.00 | 36.97 | 3.66 |
719 | 841 | 2.094494 | AGAGTGACTACAATGGTGCTCG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
769 | 891 | 5.924254 | TCGATTTGATGTGTTTCGAGTAAGT | 59.076 | 36.000 | 0.00 | 0.00 | 34.24 | 2.24 |
810 | 3286 | 4.536489 | AGTAAGGTTTTCTAGGGCATCTGT | 59.464 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1365 | 3841 | 1.451927 | GCTGTGATTGATGGGCGGA | 60.452 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
1386 | 3862 | 2.158667 | AGTGTCGGGTCTGATTTTGGTT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
1423 | 3899 | 0.193574 | AGAAGGTGAAGGTCCCCTCA | 59.806 | 55.000 | 0.00 | 0.00 | 30.89 | 3.86 |
1472 | 3948 | 1.002257 | TGCACCGATGTGATGGCTT | 60.002 | 52.632 | 0.00 | 0.00 | 45.76 | 4.35 |
1524 | 4000 | 2.545952 | CGCAGGTTCGATAATAGCCTGT | 60.546 | 50.000 | 10.11 | 0.00 | 46.07 | 4.00 |
1525 | 4001 | 3.467803 | GCAGGTTCGATAATAGCCTGTT | 58.532 | 45.455 | 10.11 | 0.00 | 46.07 | 3.16 |
1526 | 4002 | 3.877508 | GCAGGTTCGATAATAGCCTGTTT | 59.122 | 43.478 | 10.11 | 0.00 | 46.07 | 2.83 |
1585 | 4061 | 7.466725 | GCTGGATGTGTATTTTGCGTAGATTAA | 60.467 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
1645 | 4125 | 2.487762 | TCGAAATGTGGCTTGATTGGTC | 59.512 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
1736 | 4216 | 2.959465 | AGAGTTCTCCCAAAAGGGTG | 57.041 | 50.000 | 0.00 | 0.00 | 35.67 | 4.61 |
1789 | 4269 | 7.920738 | AGTGCTTGTTAGAAAAGAACTGTTAG | 58.079 | 34.615 | 0.00 | 0.00 | 41.21 | 2.34 |
1868 | 4348 | 8.565780 | TTATCCATCAGCCATCATATATGGTA | 57.434 | 34.615 | 12.78 | 0.00 | 41.17 | 3.25 |
1892 | 4404 | 5.066893 | ACATAACAGATGGCAAAGCACATAG | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 2.23 |
1915 | 4427 | 9.998106 | ATAGCTACAAGGTCGAACAATATTTAT | 57.002 | 29.630 | 1.87 | 0.00 | 0.00 | 1.40 |
1982 | 4494 | 4.980339 | TGATGCTGCCTATTATGAAGGA | 57.020 | 40.909 | 0.00 | 0.00 | 36.08 | 3.36 |
2067 | 4579 | 6.874134 | TGATTACTAGAACTTTTGAGACTGGC | 59.126 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
2075 | 4587 | 3.131046 | ACTTTTGAGACTGGCCTGTTTTG | 59.869 | 43.478 | 17.25 | 6.12 | 0.00 | 2.44 |
2139 | 4651 | 5.946377 | ACCCCTTAAAACTATGAAGCTTCAG | 59.054 | 40.000 | 31.14 | 21.75 | 41.08 | 3.02 |
2153 | 4665 | 7.750229 | TGAAGCTTCAGTAATCTCAACATTT | 57.250 | 32.000 | 25.16 | 0.00 | 32.50 | 2.32 |
2157 | 4669 | 9.899226 | AAGCTTCAGTAATCTCAACATTTAAAC | 57.101 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
2160 | 4672 | 7.972832 | TCAGTAATCTCAACATTTAAACCGT | 57.027 | 32.000 | 0.00 | 0.00 | 0.00 | 4.83 |
2295 | 4807 | 2.814280 | ACTCTGTTGTACAGGAACGG | 57.186 | 50.000 | 6.96 | 0.00 | 45.94 | 4.44 |
2430 | 4942 | 4.200092 | AGATAAAGGTCAAAGAATCGGCC | 58.800 | 43.478 | 0.00 | 0.00 | 0.00 | 6.13 |
2737 | 5250 | 3.583806 | GATCTACATGATCTGCGAAGGG | 58.416 | 50.000 | 0.00 | 0.00 | 46.05 | 3.95 |
2779 | 5292 | 2.396608 | CACTCACCTCCCATGAGATCT | 58.603 | 52.381 | 8.92 | 0.00 | 45.46 | 2.75 |
2833 | 5346 | 4.475944 | CAAGAACTCTACAAATTTGCCGG | 58.524 | 43.478 | 18.12 | 0.00 | 0.00 | 6.13 |
2962 | 5475 | 3.381045 | GTGCCTTTGTTAAAGAACAGCC | 58.619 | 45.455 | 3.02 | 0.00 | 46.11 | 4.85 |
3063 | 5576 | 4.498241 | TGTGTGCTGTATCATCTGTCTTC | 58.502 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
3085 | 5598 | 6.371809 | TCCAAGGCATCGTGTTTTAATATC | 57.628 | 37.500 | 0.00 | 0.00 | 0.00 | 1.63 |
3086 | 5599 | 5.883115 | TCCAAGGCATCGTGTTTTAATATCA | 59.117 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
3173 | 5855 | 5.793952 | CAGAACGATTGCTCTGAAATTTCTG | 59.206 | 40.000 | 18.64 | 17.57 | 40.09 | 3.02 |
3203 | 5885 | 3.370978 | CGTGTGGAAATCGTGCTTAGAAT | 59.629 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
3204 | 5886 | 4.651994 | GTGTGGAAATCGTGCTTAGAATG | 58.348 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
3205 | 5887 | 4.391830 | GTGTGGAAATCGTGCTTAGAATGA | 59.608 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3206 | 5888 | 4.391830 | TGTGGAAATCGTGCTTAGAATGAC | 59.608 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
3219 | 5907 | 2.198304 | GAATGACGGTGCCCCCTTCT | 62.198 | 60.000 | 0.00 | 0.00 | 32.70 | 2.85 |
3232 | 5920 | 0.610232 | CCCTTCTGGTTGCTTGGAGG | 60.610 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3235 | 5923 | 1.003580 | CTTCTGGTTGCTTGGAGGCTA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.93 |
3307 | 5998 | 6.444816 | ACTCACCCCTATGAATATATGCATGA | 59.555 | 38.462 | 15.55 | 4.65 | 0.00 | 3.07 |
3308 | 5999 | 6.892485 | TCACCCCTATGAATATATGCATGAG | 58.108 | 40.000 | 15.55 | 7.04 | 0.00 | 2.90 |
3324 | 6015 | 2.030027 | TGAGCATCCTACCCCTATGG | 57.970 | 55.000 | 0.00 | 0.00 | 41.37 | 2.74 |
3339 | 6030 | 2.441001 | CCTATGGGTGCTTCCAAGAGAT | 59.559 | 50.000 | 2.88 | 0.00 | 40.62 | 2.75 |
3340 | 6031 | 2.725221 | ATGGGTGCTTCCAAGAGATC | 57.275 | 50.000 | 2.88 | 0.00 | 40.62 | 2.75 |
3345 | 6036 | 0.176680 | TGCTTCCAAGAGATCGAGCC | 59.823 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
3356 | 6047 | 0.671781 | GATCGAGCCGGCATAGCATT | 60.672 | 55.000 | 31.54 | 5.22 | 0.00 | 3.56 |
3371 | 6354 | 9.630098 | CGGCATAGCATTTTGAGATAATAAAAT | 57.370 | 29.630 | 0.00 | 0.00 | 37.06 | 1.82 |
3417 | 6402 | 8.170553 | CAGCGATTTTCCCTAATTTTGAAATTG | 58.829 | 33.333 | 11.02 | 3.05 | 38.90 | 2.32 |
3418 | 6403 | 7.877612 | AGCGATTTTCCCTAATTTTGAAATTGT | 59.122 | 29.630 | 11.02 | 0.00 | 38.90 | 2.71 |
3453 | 6438 | 3.181453 | TGACAATTTACCGGGAGACAACA | 60.181 | 43.478 | 6.32 | 0.00 | 0.00 | 3.33 |
3483 | 6468 | 7.474474 | AATTAGGGATCCTATTGGGTAAACA | 57.526 | 36.000 | 12.58 | 0.00 | 35.87 | 2.83 |
3497 | 6482 | 2.157305 | TAAACATCCGCGTGTCCCGT | 62.157 | 55.000 | 4.92 | 0.00 | 39.32 | 5.28 |
3537 | 6523 | 0.666374 | GGACGTTTCACAAACTGGGG | 59.334 | 55.000 | 0.00 | 0.00 | 39.23 | 4.96 |
3562 | 6548 | 2.663196 | CCTCTCCCCACCGTGTTC | 59.337 | 66.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3580 | 6566 | 4.693095 | GTGTTCTGCCTTTTCTTCCTCTAG | 59.307 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
3586 | 6572 | 5.552178 | TGCCTTTTCTTCCTCTAGAAAGAC | 58.448 | 41.667 | 6.40 | 0.00 | 43.05 | 3.01 |
3587 | 6573 | 4.627900 | GCCTTTTCTTCCTCTAGAAAGACG | 59.372 | 45.833 | 6.40 | 0.00 | 43.05 | 4.18 |
3588 | 6574 | 4.627900 | CCTTTTCTTCCTCTAGAAAGACGC | 59.372 | 45.833 | 6.40 | 0.00 | 43.05 | 5.19 |
3589 | 6575 | 3.870633 | TTCTTCCTCTAGAAAGACGCC | 57.129 | 47.619 | 6.40 | 0.00 | 32.88 | 5.68 |
3590 | 6576 | 3.088789 | TCTTCCTCTAGAAAGACGCCT | 57.911 | 47.619 | 3.21 | 0.00 | 32.88 | 5.52 |
3591 | 6577 | 2.755655 | TCTTCCTCTAGAAAGACGCCTG | 59.244 | 50.000 | 3.21 | 0.00 | 32.88 | 4.85 |
3592 | 6578 | 2.509166 | TCCTCTAGAAAGACGCCTGA | 57.491 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3593 | 6579 | 2.803956 | TCCTCTAGAAAGACGCCTGAA | 58.196 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
3594 | 6580 | 3.162666 | TCCTCTAGAAAGACGCCTGAAA | 58.837 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
3595 | 6581 | 3.056749 | TCCTCTAGAAAGACGCCTGAAAC | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 2.78 |
3596 | 6582 | 3.056465 | CCTCTAGAAAGACGCCTGAAACT | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 2.66 |
3597 | 6583 | 3.914312 | TCTAGAAAGACGCCTGAAACTG | 58.086 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3598 | 6584 | 2.910688 | AGAAAGACGCCTGAAACTGA | 57.089 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3599 | 6585 | 3.194005 | AGAAAGACGCCTGAAACTGAA | 57.806 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
3600 | 6586 | 3.541632 | AGAAAGACGCCTGAAACTGAAA | 58.458 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
3601 | 6587 | 3.561725 | AGAAAGACGCCTGAAACTGAAAG | 59.438 | 43.478 | 0.00 | 0.00 | 42.29 | 2.62 |
3602 | 6588 | 1.230324 | AGACGCCTGAAACTGAAAGC | 58.770 | 50.000 | 0.00 | 0.00 | 37.60 | 3.51 |
3603 | 6589 | 0.238553 | GACGCCTGAAACTGAAAGCC | 59.761 | 55.000 | 0.00 | 0.00 | 37.60 | 4.35 |
3604 | 6590 | 0.465460 | ACGCCTGAAACTGAAAGCCA | 60.465 | 50.000 | 0.00 | 0.00 | 37.60 | 4.75 |
3606 | 6592 | 0.038801 | GCCTGAAACTGAAAGCCAGC | 60.039 | 55.000 | 0.00 | 0.00 | 46.81 | 4.85 |
3607 | 6593 | 0.239347 | CCTGAAACTGAAAGCCAGCG | 59.761 | 55.000 | 0.00 | 0.00 | 46.81 | 5.18 |
3608 | 6594 | 0.239347 | CTGAAACTGAAAGCCAGCGG | 59.761 | 55.000 | 0.00 | 0.00 | 46.81 | 5.52 |
3609 | 6595 | 0.465460 | TGAAACTGAAAGCCAGCGGT | 60.465 | 50.000 | 0.00 | 0.00 | 46.81 | 5.68 |
3610 | 6596 | 0.238553 | GAAACTGAAAGCCAGCGGTC | 59.761 | 55.000 | 0.00 | 0.00 | 46.81 | 4.79 |
3611 | 6597 | 0.465460 | AAACTGAAAGCCAGCGGTCA | 60.465 | 50.000 | 0.00 | 0.00 | 46.81 | 4.02 |
3612 | 6598 | 0.886490 | AACTGAAAGCCAGCGGTCAG | 60.886 | 55.000 | 18.36 | 18.36 | 46.81 | 3.51 |
3613 | 6599 | 1.302033 | CTGAAAGCCAGCGGTCAGT | 60.302 | 57.895 | 14.08 | 0.00 | 35.89 | 3.41 |
3614 | 6600 | 1.294659 | CTGAAAGCCAGCGGTCAGTC | 61.295 | 60.000 | 14.08 | 0.00 | 35.89 | 3.51 |
3615 | 6601 | 2.357517 | AAAGCCAGCGGTCAGTCG | 60.358 | 61.111 | 0.00 | 0.00 | 0.00 | 4.18 |
3616 | 6602 | 3.883744 | AAAGCCAGCGGTCAGTCGG | 62.884 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
3619 | 6605 | 4.436998 | CCAGCGGTCAGTCGGTCC | 62.437 | 72.222 | 0.00 | 0.00 | 38.91 | 4.46 |
3620 | 6606 | 3.680786 | CAGCGGTCAGTCGGTCCA | 61.681 | 66.667 | 0.00 | 0.00 | 38.91 | 4.02 |
3621 | 6607 | 2.915659 | AGCGGTCAGTCGGTCCAA | 60.916 | 61.111 | 0.00 | 0.00 | 35.95 | 3.53 |
3622 | 6608 | 2.432628 | GCGGTCAGTCGGTCCAAG | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
3623 | 6609 | 2.927580 | GCGGTCAGTCGGTCCAAGA | 61.928 | 63.158 | 0.00 | 0.00 | 0.00 | 3.02 |
3624 | 6610 | 1.663739 | CGGTCAGTCGGTCCAAGAA | 59.336 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
3625 | 6611 | 0.666577 | CGGTCAGTCGGTCCAAGAAC | 60.667 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3626 | 6612 | 0.320508 | GGTCAGTCGGTCCAAGAACC | 60.321 | 60.000 | 0.00 | 0.00 | 35.86 | 3.62 |
3627 | 6613 | 0.391597 | GTCAGTCGGTCCAAGAACCA | 59.608 | 55.000 | 0.00 | 0.00 | 39.43 | 3.67 |
3628 | 6614 | 1.124780 | TCAGTCGGTCCAAGAACCAA | 58.875 | 50.000 | 0.00 | 0.00 | 39.43 | 3.67 |
3629 | 6615 | 1.202604 | TCAGTCGGTCCAAGAACCAAC | 60.203 | 52.381 | 0.00 | 0.00 | 39.43 | 3.77 |
3630 | 6616 | 0.108019 | AGTCGGTCCAAGAACCAACC | 59.892 | 55.000 | 0.00 | 0.00 | 39.43 | 3.77 |
3631 | 6617 | 0.887836 | GTCGGTCCAAGAACCAACCC | 60.888 | 60.000 | 0.00 | 0.00 | 39.43 | 4.11 |
3632 | 6618 | 1.057851 | TCGGTCCAAGAACCAACCCT | 61.058 | 55.000 | 0.00 | 0.00 | 39.43 | 4.34 |
3633 | 6619 | 0.688487 | CGGTCCAAGAACCAACCCTA | 59.312 | 55.000 | 0.00 | 0.00 | 39.43 | 3.53 |
3634 | 6620 | 1.338769 | CGGTCCAAGAACCAACCCTAG | 60.339 | 57.143 | 0.00 | 0.00 | 39.43 | 3.02 |
3635 | 6621 | 1.982958 | GGTCCAAGAACCAACCCTAGA | 59.017 | 52.381 | 0.00 | 0.00 | 39.27 | 2.43 |
3636 | 6622 | 2.027100 | GGTCCAAGAACCAACCCTAGAG | 60.027 | 54.545 | 0.00 | 0.00 | 39.27 | 2.43 |
3637 | 6623 | 1.628846 | TCCAAGAACCAACCCTAGAGC | 59.371 | 52.381 | 0.00 | 0.00 | 0.00 | 4.09 |
3638 | 6624 | 1.340114 | CCAAGAACCAACCCTAGAGCC | 60.340 | 57.143 | 0.00 | 0.00 | 0.00 | 4.70 |
3639 | 6625 | 0.613777 | AAGAACCAACCCTAGAGCCG | 59.386 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
3640 | 6626 | 1.221021 | GAACCAACCCTAGAGCCGG | 59.779 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
3641 | 6627 | 1.538135 | AACCAACCCTAGAGCCGGT | 60.538 | 57.895 | 1.90 | 0.00 | 0.00 | 5.28 |
3642 | 6628 | 1.838073 | AACCAACCCTAGAGCCGGTG | 61.838 | 60.000 | 1.90 | 0.00 | 30.96 | 4.94 |
3643 | 6629 | 2.584608 | CAACCCTAGAGCCGGTGG | 59.415 | 66.667 | 1.90 | 0.00 | 30.96 | 4.61 |
3644 | 6630 | 2.122056 | AACCCTAGAGCCGGTGGT | 59.878 | 61.111 | 1.90 | 0.00 | 30.96 | 4.16 |
3645 | 6631 | 2.291043 | AACCCTAGAGCCGGTGGTG | 61.291 | 63.158 | 1.90 | 0.00 | 30.96 | 4.17 |
3646 | 6632 | 3.470888 | CCCTAGAGCCGGTGGTGG | 61.471 | 72.222 | 1.90 | 0.00 | 0.00 | 4.61 |
3647 | 6633 | 3.470888 | CCTAGAGCCGGTGGTGGG | 61.471 | 72.222 | 1.90 | 0.00 | 0.00 | 4.61 |
3654 | 6640 | 3.465701 | CCGGTGGTGGGCAAATTT | 58.534 | 55.556 | 0.00 | 0.00 | 0.00 | 1.82 |
3655 | 6641 | 1.291906 | CCGGTGGTGGGCAAATTTC | 59.708 | 57.895 | 0.00 | 0.00 | 0.00 | 2.17 |
3656 | 6642 | 1.291906 | CGGTGGTGGGCAAATTTCC | 59.708 | 57.895 | 0.00 | 0.00 | 0.00 | 3.13 |
3657 | 6643 | 1.467678 | CGGTGGTGGGCAAATTTCCA | 61.468 | 55.000 | 8.36 | 2.49 | 0.00 | 3.53 |
3658 | 6644 | 0.321346 | GGTGGTGGGCAAATTTCCAG | 59.679 | 55.000 | 0.00 | 0.00 | 33.13 | 3.86 |
3664 | 6650 | 2.365410 | GGCAAATTTCCAGCCCTGT | 58.635 | 52.632 | 6.74 | 0.00 | 42.58 | 4.00 |
3665 | 6651 | 0.247460 | GGCAAATTTCCAGCCCTGTC | 59.753 | 55.000 | 6.74 | 0.00 | 42.58 | 3.51 |
3666 | 6652 | 0.109132 | GCAAATTTCCAGCCCTGTCG | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3667 | 6653 | 1.247567 | CAAATTTCCAGCCCTGTCGT | 58.752 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3668 | 6654 | 1.068333 | CAAATTTCCAGCCCTGTCGTG | 60.068 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
3669 | 6655 | 0.110486 | AATTTCCAGCCCTGTCGTGT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
3670 | 6656 | 0.110486 | ATTTCCAGCCCTGTCGTGTT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
3671 | 6657 | 0.534203 | TTTCCAGCCCTGTCGTGTTC | 60.534 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3672 | 6658 | 2.358737 | CCAGCCCTGTCGTGTTCC | 60.359 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
3673 | 6659 | 2.358737 | CAGCCCTGTCGTGTTCCC | 60.359 | 66.667 | 0.00 | 0.00 | 0.00 | 3.97 |
3674 | 6660 | 3.637273 | AGCCCTGTCGTGTTCCCC | 61.637 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
3675 | 6661 | 3.637273 | GCCCTGTCGTGTTCCCCT | 61.637 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
3676 | 6662 | 3.157680 | CCCTGTCGTGTTCCCCTT | 58.842 | 61.111 | 0.00 | 0.00 | 0.00 | 3.95 |
3677 | 6663 | 1.454539 | CCCTGTCGTGTTCCCCTTT | 59.545 | 57.895 | 0.00 | 0.00 | 0.00 | 3.11 |
3678 | 6664 | 0.179001 | CCCTGTCGTGTTCCCCTTTT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3679 | 6665 | 0.951558 | CCTGTCGTGTTCCCCTTTTG | 59.048 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3680 | 6666 | 1.675552 | CTGTCGTGTTCCCCTTTTGT | 58.324 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3681 | 6667 | 2.021457 | CTGTCGTGTTCCCCTTTTGTT | 58.979 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
3682 | 6668 | 3.207778 | CTGTCGTGTTCCCCTTTTGTTA | 58.792 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
3683 | 6669 | 3.207778 | TGTCGTGTTCCCCTTTTGTTAG | 58.792 | 45.455 | 0.00 | 0.00 | 0.00 | 2.34 |
3684 | 6670 | 3.208594 | GTCGTGTTCCCCTTTTGTTAGT | 58.791 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
3685 | 6671 | 3.628942 | GTCGTGTTCCCCTTTTGTTAGTT | 59.371 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
3686 | 6672 | 3.878699 | TCGTGTTCCCCTTTTGTTAGTTC | 59.121 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3687 | 6673 | 3.881089 | CGTGTTCCCCTTTTGTTAGTTCT | 59.119 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3688 | 6674 | 4.337274 | CGTGTTCCCCTTTTGTTAGTTCTT | 59.663 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
3689 | 6675 | 5.163591 | CGTGTTCCCCTTTTGTTAGTTCTTT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3690 | 6676 | 6.626402 | CGTGTTCCCCTTTTGTTAGTTCTTTT | 60.626 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
3691 | 6677 | 7.101054 | GTGTTCCCCTTTTGTTAGTTCTTTTT | 58.899 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
3692 | 6678 | 8.252417 | GTGTTCCCCTTTTGTTAGTTCTTTTTA | 58.748 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
3693 | 6679 | 8.983789 | TGTTCCCCTTTTGTTAGTTCTTTTTAT | 58.016 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3694 | 6680 | 9.826574 | GTTCCCCTTTTGTTAGTTCTTTTTATT | 57.173 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3695 | 6681 | 9.825109 | TTCCCCTTTTGTTAGTTCTTTTTATTG | 57.175 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
3696 | 6682 | 9.203163 | TCCCCTTTTGTTAGTTCTTTTTATTGA | 57.797 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
3697 | 6683 | 9.256477 | CCCCTTTTGTTAGTTCTTTTTATTGAC | 57.744 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3698 | 6684 | 9.256477 | CCCTTTTGTTAGTTCTTTTTATTGACC | 57.744 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
3699 | 6685 | 9.810545 | CCTTTTGTTAGTTCTTTTTATTGACCA | 57.189 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
3701 | 6687 | 8.865590 | TTTGTTAGTTCTTTTTATTGACCAGC | 57.134 | 30.769 | 0.00 | 0.00 | 0.00 | 4.85 |
3702 | 6688 | 6.664515 | TGTTAGTTCTTTTTATTGACCAGCG | 58.335 | 36.000 | 0.00 | 0.00 | 0.00 | 5.18 |
3703 | 6689 | 6.483974 | TGTTAGTTCTTTTTATTGACCAGCGA | 59.516 | 34.615 | 0.00 | 0.00 | 0.00 | 4.93 |
3704 | 6690 | 7.012515 | TGTTAGTTCTTTTTATTGACCAGCGAA | 59.987 | 33.333 | 0.00 | 0.00 | 0.00 | 4.70 |
3705 | 6691 | 5.758924 | AGTTCTTTTTATTGACCAGCGAAC | 58.241 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
3706 | 6692 | 5.298276 | AGTTCTTTTTATTGACCAGCGAACA | 59.702 | 36.000 | 0.00 | 0.00 | 32.84 | 3.18 |
3707 | 6693 | 5.759506 | TCTTTTTATTGACCAGCGAACAA | 57.240 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
3708 | 6694 | 6.137794 | TCTTTTTATTGACCAGCGAACAAA | 57.862 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3709 | 6695 | 6.744112 | TCTTTTTATTGACCAGCGAACAAAT | 58.256 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3710 | 6696 | 7.206687 | TCTTTTTATTGACCAGCGAACAAATT | 58.793 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
3711 | 6697 | 6.761731 | TTTTATTGACCAGCGAACAAATTG | 57.238 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
3712 | 6698 | 5.697473 | TTATTGACCAGCGAACAAATTGA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 2.57 |
3713 | 6699 | 4.789012 | ATTGACCAGCGAACAAATTGAT | 57.211 | 36.364 | 0.00 | 0.00 | 0.00 | 2.57 |
3714 | 6700 | 4.582701 | TTGACCAGCGAACAAATTGATT | 57.417 | 36.364 | 0.00 | 0.00 | 0.00 | 2.57 |
3715 | 6701 | 5.697473 | TTGACCAGCGAACAAATTGATTA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 1.75 |
3716 | 6702 | 5.697473 | TGACCAGCGAACAAATTGATTAA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 1.40 |
3717 | 6703 | 5.457140 | TGACCAGCGAACAAATTGATTAAC | 58.543 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
3718 | 6704 | 5.009110 | TGACCAGCGAACAAATTGATTAACA | 59.991 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3719 | 6705 | 5.837437 | ACCAGCGAACAAATTGATTAACAA | 58.163 | 33.333 | 0.00 | 0.00 | 42.95 | 2.83 |
3720 | 6706 | 6.276847 | ACCAGCGAACAAATTGATTAACAAA | 58.723 | 32.000 | 0.00 | 0.00 | 42.03 | 2.83 |
3721 | 6707 | 6.200097 | ACCAGCGAACAAATTGATTAACAAAC | 59.800 | 34.615 | 0.00 | 0.00 | 42.03 | 2.93 |
3722 | 6708 | 6.420604 | CCAGCGAACAAATTGATTAACAAACT | 59.579 | 34.615 | 0.00 | 0.00 | 42.03 | 2.66 |
3723 | 6709 | 7.275785 | CAGCGAACAAATTGATTAACAAACTG | 58.724 | 34.615 | 0.00 | 0.00 | 42.03 | 3.16 |
3724 | 6710 | 6.064525 | GCGAACAAATTGATTAACAAACTGC | 58.935 | 36.000 | 0.00 | 0.00 | 42.03 | 4.40 |
3725 | 6711 | 6.580476 | CGAACAAATTGATTAACAAACTGCC | 58.420 | 36.000 | 0.00 | 0.00 | 42.03 | 4.85 |
3726 | 6712 | 6.523676 | AACAAATTGATTAACAAACTGCCG | 57.476 | 33.333 | 0.00 | 0.00 | 42.03 | 5.69 |
3727 | 6713 | 5.596845 | ACAAATTGATTAACAAACTGCCGT | 58.403 | 33.333 | 0.00 | 0.00 | 42.03 | 5.68 |
3728 | 6714 | 6.045955 | ACAAATTGATTAACAAACTGCCGTT | 58.954 | 32.000 | 0.00 | 0.00 | 42.03 | 4.44 |
3729 | 6715 | 6.200097 | ACAAATTGATTAACAAACTGCCGTTC | 59.800 | 34.615 | 0.00 | 0.00 | 42.03 | 3.95 |
3730 | 6716 | 5.705609 | ATTGATTAACAAACTGCCGTTCT | 57.294 | 34.783 | 0.00 | 0.00 | 42.03 | 3.01 |
3731 | 6717 | 4.481930 | TGATTAACAAACTGCCGTTCTG | 57.518 | 40.909 | 0.00 | 0.00 | 31.66 | 3.02 |
3732 | 6718 | 3.880490 | TGATTAACAAACTGCCGTTCTGT | 59.120 | 39.130 | 0.00 | 0.00 | 31.66 | 3.41 |
3733 | 6719 | 4.336993 | TGATTAACAAACTGCCGTTCTGTT | 59.663 | 37.500 | 18.02 | 18.02 | 38.30 | 3.16 |
3734 | 6720 | 5.527951 | TGATTAACAAACTGCCGTTCTGTTA | 59.472 | 36.000 | 16.73 | 16.73 | 36.07 | 2.41 |
3735 | 6721 | 3.963383 | AACAAACTGCCGTTCTGTTAG | 57.037 | 42.857 | 14.80 | 0.00 | 36.07 | 2.34 |
3736 | 6722 | 2.914059 | ACAAACTGCCGTTCTGTTAGT | 58.086 | 42.857 | 0.00 | 0.00 | 36.07 | 2.24 |
3737 | 6723 | 3.275999 | ACAAACTGCCGTTCTGTTAGTT | 58.724 | 40.909 | 0.00 | 0.00 | 36.07 | 2.24 |
3738 | 6724 | 3.311596 | ACAAACTGCCGTTCTGTTAGTTC | 59.688 | 43.478 | 0.00 | 0.00 | 36.07 | 3.01 |
3739 | 6725 | 3.470645 | AACTGCCGTTCTGTTAGTTCT | 57.529 | 42.857 | 0.00 | 0.00 | 35.46 | 3.01 |
3740 | 6726 | 3.470645 | ACTGCCGTTCTGTTAGTTCTT | 57.529 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
3741 | 6727 | 3.805207 | ACTGCCGTTCTGTTAGTTCTTT | 58.195 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
3742 | 6728 | 3.808174 | ACTGCCGTTCTGTTAGTTCTTTC | 59.192 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
3743 | 6729 | 4.058817 | CTGCCGTTCTGTTAGTTCTTTCT | 58.941 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
3744 | 6730 | 4.448210 | TGCCGTTCTGTTAGTTCTTTCTT | 58.552 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
3745 | 6731 | 5.603596 | TGCCGTTCTGTTAGTTCTTTCTTA | 58.396 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
3746 | 6732 | 6.228258 | TGCCGTTCTGTTAGTTCTTTCTTAT | 58.772 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
7 | 8 | 1.067821 | GGAGACAAGGCGGATCAGTAG | 59.932 | 57.143 | 0.00 | 0.00 | 0.00 | 2.57 |
8 | 9 | 1.112113 | GGAGACAAGGCGGATCAGTA | 58.888 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
138 | 144 | 2.740981 | GAGTCGTCCTTGTCTCGTCTTA | 59.259 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
173 | 179 | 2.432510 | GGACTAGGTGAGGAGGACATTG | 59.567 | 54.545 | 0.00 | 0.00 | 0.00 | 2.82 |
262 | 369 | 1.247567 | CAACCAAGACCGGCAGAATT | 58.752 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
267 | 374 | 1.002624 | GATCCAACCAAGACCGGCA | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
269 | 376 | 1.679032 | GGAAGATCCAACCAAGACCGG | 60.679 | 57.143 | 0.00 | 0.00 | 36.28 | 5.28 |
325 | 444 | 7.489757 | GCGTAGATCAGAATATTCCAACCTATC | 59.510 | 40.741 | 11.92 | 6.53 | 0.00 | 2.08 |
511 | 630 | 2.695359 | GTCAATCGACCACCTAGCAAA | 58.305 | 47.619 | 0.00 | 0.00 | 36.02 | 3.68 |
562 | 682 | 8.120140 | TCATCAATGGTCATGACAATACAAAA | 57.880 | 30.769 | 26.47 | 5.90 | 0.00 | 2.44 |
675 | 797 | 3.438781 | GTGACCGATCTGGCATGTAAAAA | 59.561 | 43.478 | 0.00 | 0.00 | 43.94 | 1.94 |
676 | 798 | 3.006940 | GTGACCGATCTGGCATGTAAAA | 58.993 | 45.455 | 0.00 | 0.00 | 43.94 | 1.52 |
677 | 799 | 2.027653 | TGTGACCGATCTGGCATGTAAA | 60.028 | 45.455 | 0.00 | 0.00 | 43.94 | 2.01 |
678 | 800 | 1.552792 | TGTGACCGATCTGGCATGTAA | 59.447 | 47.619 | 0.00 | 0.00 | 43.94 | 2.41 |
679 | 801 | 1.136891 | CTGTGACCGATCTGGCATGTA | 59.863 | 52.381 | 0.00 | 0.00 | 43.94 | 2.29 |
699 | 821 | 2.094700 | TCGAGCACCATTGTAGTCACTC | 60.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
777 | 908 | 7.284944 | CCCTAGAAAACCTTACTCGATTCTCTA | 59.715 | 40.741 | 0.00 | 0.00 | 0.00 | 2.43 |
783 | 915 | 3.773119 | TGCCCTAGAAAACCTTACTCGAT | 59.227 | 43.478 | 0.00 | 0.00 | 0.00 | 3.59 |
810 | 3286 | 2.025981 | ACATGCCAAACCAGATGAGCTA | 60.026 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
988 | 3464 | 1.226974 | CGCTCATGTTCCCGACGAT | 60.227 | 57.895 | 0.00 | 0.00 | 0.00 | 3.73 |
989 | 3465 | 2.180769 | CGCTCATGTTCCCGACGA | 59.819 | 61.111 | 0.00 | 0.00 | 0.00 | 4.20 |
1071 | 3547 | 1.228245 | GGTGCTGACCTTGAAGGCA | 60.228 | 57.895 | 11.96 | 9.49 | 39.63 | 4.75 |
1365 | 3841 | 1.420138 | ACCAAAATCAGACCCGACACT | 59.580 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
1386 | 3862 | 0.601046 | CTGCTCTGCAACAACCGAGA | 60.601 | 55.000 | 2.78 | 0.00 | 38.41 | 4.04 |
1472 | 3948 | 0.885879 | CTGGCTTGCTGCTTCATCAA | 59.114 | 50.000 | 0.00 | 0.00 | 42.39 | 2.57 |
1495 | 3971 | 3.554692 | CGAACCTGCGGCGACATC | 61.555 | 66.667 | 12.98 | 2.29 | 0.00 | 3.06 |
1585 | 4061 | 8.956426 | ACAAATTTGATCAGTACGTAATTCCAT | 58.044 | 29.630 | 24.64 | 0.00 | 0.00 | 3.41 |
1594 | 4070 | 9.265938 | CAGAATAACACAAATTTGATCAGTACG | 57.734 | 33.333 | 24.64 | 2.64 | 0.00 | 3.67 |
1645 | 4125 | 5.475719 | AGTGCAAAGATGTCATGAATTTGG | 58.524 | 37.500 | 18.17 | 4.04 | 32.74 | 3.28 |
1681 | 4161 | 4.072131 | TCTGCTGTGAAAATAGTCCCAAC | 58.928 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
1736 | 4216 | 1.092348 | GTCAGCCAATAAACCCCGAC | 58.908 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1789 | 4269 | 7.102993 | ACTCATGGCATTAAATTTGGTTTACC | 58.897 | 34.615 | 0.00 | 0.00 | 32.17 | 2.85 |
1868 | 4348 | 3.156293 | TGTGCTTTGCCATCTGTTATGT | 58.844 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
1885 | 4397 | 2.579207 | TCGACCTTGTAGCTATGTGC | 57.421 | 50.000 | 0.00 | 0.00 | 43.29 | 4.57 |
1892 | 4404 | 8.138365 | TGATAAATATTGTTCGACCTTGTAGC | 57.862 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
1915 | 4427 | 4.019950 | TCCAACTGATGCTTCATTCTCTGA | 60.020 | 41.667 | 2.33 | 0.00 | 0.00 | 3.27 |
1982 | 4494 | 7.094118 | ACTGCCGTTTAATTAATACATGTTGGT | 60.094 | 33.333 | 2.30 | 0.00 | 0.00 | 3.67 |
2067 | 4579 | 8.489559 | CAAATATGTGATGACAAACAAAACAGG | 58.510 | 33.333 | 0.00 | 0.00 | 35.11 | 4.00 |
2075 | 4587 | 4.081752 | TGGGCCAAATATGTGATGACAAAC | 60.082 | 41.667 | 2.13 | 0.00 | 35.11 | 2.93 |
2139 | 4651 | 7.744715 | CACTGACGGTTTAAATGTTGAGATTAC | 59.255 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
2295 | 4807 | 6.934645 | TGTCGGATAATATCACAGAAAATCCC | 59.065 | 38.462 | 2.41 | 0.00 | 0.00 | 3.85 |
2469 | 4981 | 0.767446 | CCTCATCAGGATCTGGGCCT | 60.767 | 60.000 | 4.53 | 0.00 | 43.65 | 5.19 |
2582 | 5094 | 7.121020 | TGTTGCTATGATATCAACTGCAGAAAA | 59.879 | 33.333 | 23.35 | 4.83 | 40.34 | 2.29 |
2585 | 5097 | 5.673514 | TGTTGCTATGATATCAACTGCAGA | 58.326 | 37.500 | 23.35 | 14.10 | 40.34 | 4.26 |
2737 | 5250 | 0.733150 | GGCCAATCTTCTACCGCAAC | 59.267 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2812 | 5325 | 4.023193 | CACCGGCAAATTTGTAGAGTTCTT | 60.023 | 41.667 | 19.03 | 0.00 | 0.00 | 2.52 |
2833 | 5346 | 0.179134 | CCTACACGCCTACAGCTCAC | 60.179 | 60.000 | 0.00 | 0.00 | 40.39 | 3.51 |
2907 | 5420 | 2.166829 | CTCCAGGAGAGATACCATCGG | 58.833 | 57.143 | 11.62 | 0.00 | 46.50 | 4.18 |
2913 | 5426 | 4.202305 | CCAAATCACCTCCAGGAGAGATAC | 60.202 | 50.000 | 19.21 | 0.00 | 46.50 | 2.24 |
2962 | 5475 | 0.165079 | ACGAACGCAAAGCCAATACG | 59.835 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3007 | 5520 | 5.444613 | CGAATCAACACGGTTATCAAGACAG | 60.445 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3011 | 5524 | 4.625742 | AGACGAATCAACACGGTTATCAAG | 59.374 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3063 | 5576 | 6.130298 | TGATATTAAAACACGATGCCTTGG | 57.870 | 37.500 | 0.00 | 0.00 | 0.00 | 3.61 |
3085 | 5598 | 6.546395 | ACTGTAGCAAATTCGCTAAGAAATG | 58.454 | 36.000 | 0.00 | 0.00 | 45.72 | 2.32 |
3086 | 5599 | 6.743575 | ACTGTAGCAAATTCGCTAAGAAAT | 57.256 | 33.333 | 0.00 | 0.00 | 45.72 | 2.17 |
3173 | 5855 | 0.452784 | GATTTCCACACGCGCTCAAC | 60.453 | 55.000 | 5.73 | 0.00 | 0.00 | 3.18 |
3219 | 5907 | 2.603075 | AAATAGCCTCCAAGCAACCA | 57.397 | 45.000 | 0.00 | 0.00 | 34.23 | 3.67 |
3243 | 5931 | 6.537301 | TGTGATCGACTTCTTTGTACTGTTTT | 59.463 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
3249 | 5937 | 6.237227 | CGTGTATGTGATCGACTTCTTTGTAC | 60.237 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
3250 | 5938 | 5.798434 | CGTGTATGTGATCGACTTCTTTGTA | 59.202 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3251 | 5939 | 4.621460 | CGTGTATGTGATCGACTTCTTTGT | 59.379 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
3252 | 5940 | 4.857037 | TCGTGTATGTGATCGACTTCTTTG | 59.143 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
3254 | 5942 | 4.663166 | CTCGTGTATGTGATCGACTTCTT | 58.337 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
3318 | 6009 | 1.839994 | TCTCTTGGAAGCACCCATAGG | 59.160 | 52.381 | 0.00 | 0.00 | 35.87 | 2.57 |
3324 | 6015 | 1.933247 | CTCGATCTCTTGGAAGCACC | 58.067 | 55.000 | 0.00 | 0.00 | 39.54 | 5.01 |
3326 | 6017 | 0.176680 | GGCTCGATCTCTTGGAAGCA | 59.823 | 55.000 | 0.00 | 0.00 | 29.53 | 3.91 |
3327 | 6018 | 0.873743 | CGGCTCGATCTCTTGGAAGC | 60.874 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3333 | 6024 | 0.600557 | CTATGCCGGCTCGATCTCTT | 59.399 | 55.000 | 29.70 | 3.51 | 0.00 | 2.85 |
3339 | 6030 | 0.463654 | AAAATGCTATGCCGGCTCGA | 60.464 | 50.000 | 29.70 | 7.94 | 0.00 | 4.04 |
3340 | 6031 | 0.317269 | CAAAATGCTATGCCGGCTCG | 60.317 | 55.000 | 29.70 | 16.50 | 0.00 | 5.03 |
3345 | 6036 | 9.630098 | ATTTTATTATCTCAAAATGCTATGCCG | 57.370 | 29.630 | 0.00 | 0.00 | 34.04 | 5.69 |
3385 | 6368 | 7.839680 | AAATTAGGGAAAATCGCTGGATTAT | 57.160 | 32.000 | 7.14 | 0.00 | 41.99 | 1.28 |
3389 | 6372 | 5.013547 | TCAAAATTAGGGAAAATCGCTGGA | 58.986 | 37.500 | 7.14 | 0.00 | 40.10 | 3.86 |
3417 | 6402 | 7.344441 | GGTAAATTGTCATTGCAAGTGAAAAC | 58.656 | 34.615 | 4.94 | 0.34 | 0.00 | 2.43 |
3418 | 6403 | 6.199908 | CGGTAAATTGTCATTGCAAGTGAAAA | 59.800 | 34.615 | 4.94 | 10.51 | 0.00 | 2.29 |
3453 | 6438 | 5.012768 | CCCAATAGGATCCCTAATTACACGT | 59.987 | 44.000 | 8.55 | 0.00 | 39.77 | 4.49 |
3562 | 6548 | 5.641636 | GTCTTTCTAGAGGAAGAAAAGGCAG | 59.358 | 44.000 | 8.19 | 0.00 | 43.13 | 4.85 |
3580 | 6566 | 3.850010 | GCTTTCAGTTTCAGGCGTCTTTC | 60.850 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
3586 | 6572 | 0.239347 | CTGGCTTTCAGTTTCAGGCG | 59.761 | 55.000 | 0.00 | 0.00 | 38.64 | 5.52 |
3587 | 6573 | 0.038801 | GCTGGCTTTCAGTTTCAGGC | 60.039 | 55.000 | 0.00 | 0.00 | 45.08 | 4.85 |
3588 | 6574 | 0.239347 | CGCTGGCTTTCAGTTTCAGG | 59.761 | 55.000 | 0.00 | 0.00 | 45.08 | 3.86 |
3589 | 6575 | 0.239347 | CCGCTGGCTTTCAGTTTCAG | 59.761 | 55.000 | 0.00 | 0.00 | 45.08 | 3.02 |
3590 | 6576 | 0.465460 | ACCGCTGGCTTTCAGTTTCA | 60.465 | 50.000 | 0.00 | 0.00 | 45.08 | 2.69 |
3591 | 6577 | 0.238553 | GACCGCTGGCTTTCAGTTTC | 59.761 | 55.000 | 0.00 | 0.00 | 45.08 | 2.78 |
3592 | 6578 | 0.465460 | TGACCGCTGGCTTTCAGTTT | 60.465 | 50.000 | 0.00 | 0.00 | 45.08 | 2.66 |
3593 | 6579 | 0.886490 | CTGACCGCTGGCTTTCAGTT | 60.886 | 55.000 | 10.31 | 0.00 | 45.08 | 3.16 |
3594 | 6580 | 1.302033 | CTGACCGCTGGCTTTCAGT | 60.302 | 57.895 | 10.31 | 0.00 | 45.08 | 3.41 |
3595 | 6581 | 1.294659 | GACTGACCGCTGGCTTTCAG | 61.295 | 60.000 | 14.56 | 14.56 | 46.03 | 3.02 |
3596 | 6582 | 1.301716 | GACTGACCGCTGGCTTTCA | 60.302 | 57.895 | 0.00 | 0.00 | 0.00 | 2.69 |
3597 | 6583 | 2.383527 | CGACTGACCGCTGGCTTTC | 61.384 | 63.158 | 0.00 | 0.00 | 0.00 | 2.62 |
3598 | 6584 | 2.357517 | CGACTGACCGCTGGCTTT | 60.358 | 61.111 | 0.00 | 0.00 | 0.00 | 3.51 |
3599 | 6585 | 4.379243 | CCGACTGACCGCTGGCTT | 62.379 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
3602 | 6588 | 4.436998 | GGACCGACTGACCGCTGG | 62.437 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
3603 | 6589 | 3.220999 | TTGGACCGACTGACCGCTG | 62.221 | 63.158 | 0.00 | 0.00 | 0.00 | 5.18 |
3604 | 6590 | 2.915659 | TTGGACCGACTGACCGCT | 60.916 | 61.111 | 0.00 | 0.00 | 0.00 | 5.52 |
3605 | 6591 | 2.430382 | TTCTTGGACCGACTGACCGC | 62.430 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
3606 | 6592 | 0.666577 | GTTCTTGGACCGACTGACCG | 60.667 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3607 | 6593 | 0.320508 | GGTTCTTGGACCGACTGACC | 60.321 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3608 | 6594 | 0.391597 | TGGTTCTTGGACCGACTGAC | 59.608 | 55.000 | 0.00 | 0.00 | 42.83 | 3.51 |
3609 | 6595 | 1.124780 | TTGGTTCTTGGACCGACTGA | 58.875 | 50.000 | 0.00 | 0.00 | 42.83 | 3.41 |
3610 | 6596 | 1.226746 | GTTGGTTCTTGGACCGACTG | 58.773 | 55.000 | 10.52 | 0.00 | 46.38 | 3.51 |
3611 | 6597 | 3.700198 | GTTGGTTCTTGGACCGACT | 57.300 | 52.632 | 10.52 | 0.00 | 46.38 | 4.18 |
3613 | 6599 | 1.057851 | AGGGTTGGTTCTTGGACCGA | 61.058 | 55.000 | 0.00 | 0.00 | 42.83 | 4.69 |
3614 | 6600 | 0.688487 | TAGGGTTGGTTCTTGGACCG | 59.312 | 55.000 | 0.00 | 0.00 | 42.83 | 4.79 |
3615 | 6601 | 1.982958 | TCTAGGGTTGGTTCTTGGACC | 59.017 | 52.381 | 0.00 | 0.00 | 40.23 | 4.46 |
3616 | 6602 | 2.615747 | GCTCTAGGGTTGGTTCTTGGAC | 60.616 | 54.545 | 0.00 | 0.00 | 0.00 | 4.02 |
3617 | 6603 | 1.628846 | GCTCTAGGGTTGGTTCTTGGA | 59.371 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
3618 | 6604 | 1.340114 | GGCTCTAGGGTTGGTTCTTGG | 60.340 | 57.143 | 0.00 | 0.00 | 0.00 | 3.61 |
3619 | 6605 | 1.676014 | CGGCTCTAGGGTTGGTTCTTG | 60.676 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
3620 | 6606 | 0.613777 | CGGCTCTAGGGTTGGTTCTT | 59.386 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3621 | 6607 | 1.265454 | CCGGCTCTAGGGTTGGTTCT | 61.265 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3622 | 6608 | 1.221021 | CCGGCTCTAGGGTTGGTTC | 59.779 | 63.158 | 0.00 | 0.00 | 0.00 | 3.62 |
3623 | 6609 | 1.538135 | ACCGGCTCTAGGGTTGGTT | 60.538 | 57.895 | 0.00 | 0.00 | 30.73 | 3.67 |
3624 | 6610 | 2.122056 | ACCGGCTCTAGGGTTGGT | 59.878 | 61.111 | 0.00 | 2.37 | 30.73 | 3.67 |
3625 | 6611 | 2.584608 | CACCGGCTCTAGGGTTGG | 59.415 | 66.667 | 0.00 | 1.13 | 33.23 | 3.77 |
3626 | 6612 | 2.291043 | ACCACCGGCTCTAGGGTTG | 61.291 | 63.158 | 0.00 | 0.00 | 33.23 | 3.77 |
3627 | 6613 | 2.122056 | ACCACCGGCTCTAGGGTT | 59.878 | 61.111 | 0.00 | 0.00 | 33.23 | 4.11 |
3628 | 6614 | 2.683933 | CACCACCGGCTCTAGGGT | 60.684 | 66.667 | 0.00 | 0.00 | 36.87 | 4.34 |
3629 | 6615 | 3.470888 | CCACCACCGGCTCTAGGG | 61.471 | 72.222 | 0.00 | 0.00 | 0.00 | 3.53 |
3630 | 6616 | 3.470888 | CCCACCACCGGCTCTAGG | 61.471 | 72.222 | 0.00 | 0.00 | 0.00 | 3.02 |
3631 | 6617 | 4.162690 | GCCCACCACCGGCTCTAG | 62.163 | 72.222 | 0.00 | 0.00 | 43.48 | 2.43 |
3637 | 6623 | 1.291906 | GAAATTTGCCCACCACCGG | 59.708 | 57.895 | 0.00 | 0.00 | 0.00 | 5.28 |
3638 | 6624 | 1.291906 | GGAAATTTGCCCACCACCG | 59.708 | 57.895 | 0.00 | 0.00 | 0.00 | 4.94 |
3639 | 6625 | 0.321346 | CTGGAAATTTGCCCACCACC | 59.679 | 55.000 | 7.27 | 0.00 | 0.00 | 4.61 |
3640 | 6626 | 0.320683 | GCTGGAAATTTGCCCACCAC | 60.321 | 55.000 | 7.27 | 0.00 | 0.00 | 4.16 |
3641 | 6627 | 1.479368 | GGCTGGAAATTTGCCCACCA | 61.479 | 55.000 | 7.27 | 1.46 | 40.71 | 4.17 |
3642 | 6628 | 1.296392 | GGCTGGAAATTTGCCCACC | 59.704 | 57.895 | 7.27 | 2.39 | 40.71 | 4.61 |
3646 | 6632 | 0.247460 | GACAGGGCTGGAAATTTGCC | 59.753 | 55.000 | 7.27 | 8.26 | 45.42 | 4.52 |
3647 | 6633 | 0.109132 | CGACAGGGCTGGAAATTTGC | 60.109 | 55.000 | 2.22 | 2.22 | 34.19 | 3.68 |
3648 | 6634 | 1.068333 | CACGACAGGGCTGGAAATTTG | 60.068 | 52.381 | 0.00 | 0.00 | 34.19 | 2.32 |
3649 | 6635 | 1.247567 | CACGACAGGGCTGGAAATTT | 58.752 | 50.000 | 0.00 | 0.00 | 34.19 | 1.82 |
3650 | 6636 | 0.110486 | ACACGACAGGGCTGGAAATT | 59.890 | 50.000 | 0.00 | 0.00 | 34.19 | 1.82 |
3651 | 6637 | 0.110486 | AACACGACAGGGCTGGAAAT | 59.890 | 50.000 | 0.00 | 0.00 | 34.19 | 2.17 |
3652 | 6638 | 0.534203 | GAACACGACAGGGCTGGAAA | 60.534 | 55.000 | 0.00 | 0.00 | 34.19 | 3.13 |
3653 | 6639 | 1.070786 | GAACACGACAGGGCTGGAA | 59.929 | 57.895 | 0.00 | 0.00 | 34.19 | 3.53 |
3654 | 6640 | 2.741092 | GAACACGACAGGGCTGGA | 59.259 | 61.111 | 0.00 | 0.00 | 34.19 | 3.86 |
3655 | 6641 | 2.358737 | GGAACACGACAGGGCTGG | 60.359 | 66.667 | 0.00 | 0.00 | 34.19 | 4.85 |
3656 | 6642 | 2.358737 | GGGAACACGACAGGGCTG | 60.359 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
3657 | 6643 | 3.637273 | GGGGAACACGACAGGGCT | 61.637 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
3658 | 6644 | 2.692273 | AAAGGGGAACACGACAGGGC | 62.692 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3659 | 6645 | 0.179001 | AAAAGGGGAACACGACAGGG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3660 | 6646 | 0.951558 | CAAAAGGGGAACACGACAGG | 59.048 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3661 | 6647 | 1.675552 | ACAAAAGGGGAACACGACAG | 58.324 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3662 | 6648 | 2.131776 | AACAAAAGGGGAACACGACA | 57.868 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3663 | 6649 | 3.208594 | ACTAACAAAAGGGGAACACGAC | 58.791 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
3664 | 6650 | 3.564053 | ACTAACAAAAGGGGAACACGA | 57.436 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
3665 | 6651 | 3.881089 | AGAACTAACAAAAGGGGAACACG | 59.119 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
3666 | 6652 | 5.847111 | AAGAACTAACAAAAGGGGAACAC | 57.153 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
3667 | 6653 | 6.860790 | AAAAGAACTAACAAAAGGGGAACA | 57.139 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3668 | 6654 | 9.826574 | AATAAAAAGAACTAACAAAAGGGGAAC | 57.173 | 29.630 | 0.00 | 0.00 | 0.00 | 3.62 |
3669 | 6655 | 9.825109 | CAATAAAAAGAACTAACAAAAGGGGAA | 57.175 | 29.630 | 0.00 | 0.00 | 0.00 | 3.97 |
3670 | 6656 | 9.203163 | TCAATAAAAAGAACTAACAAAAGGGGA | 57.797 | 29.630 | 0.00 | 0.00 | 0.00 | 4.81 |
3671 | 6657 | 9.256477 | GTCAATAAAAAGAACTAACAAAAGGGG | 57.744 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
3672 | 6658 | 9.256477 | GGTCAATAAAAAGAACTAACAAAAGGG | 57.744 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
3673 | 6659 | 9.810545 | TGGTCAATAAAAAGAACTAACAAAAGG | 57.189 | 29.630 | 0.00 | 0.00 | 0.00 | 3.11 |
3675 | 6661 | 9.308318 | GCTGGTCAATAAAAAGAACTAACAAAA | 57.692 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
3676 | 6662 | 7.646130 | CGCTGGTCAATAAAAAGAACTAACAAA | 59.354 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3677 | 6663 | 7.012515 | TCGCTGGTCAATAAAAAGAACTAACAA | 59.987 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3678 | 6664 | 6.483974 | TCGCTGGTCAATAAAAAGAACTAACA | 59.516 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
3679 | 6665 | 6.894828 | TCGCTGGTCAATAAAAAGAACTAAC | 58.105 | 36.000 | 0.00 | 0.00 | 0.00 | 2.34 |
3680 | 6666 | 7.012515 | TGTTCGCTGGTCAATAAAAAGAACTAA | 59.987 | 33.333 | 6.16 | 0.00 | 37.11 | 2.24 |
3681 | 6667 | 6.483974 | TGTTCGCTGGTCAATAAAAAGAACTA | 59.516 | 34.615 | 6.16 | 0.00 | 37.11 | 2.24 |
3682 | 6668 | 5.298276 | TGTTCGCTGGTCAATAAAAAGAACT | 59.702 | 36.000 | 6.16 | 0.00 | 37.11 | 3.01 |
3683 | 6669 | 5.516090 | TGTTCGCTGGTCAATAAAAAGAAC | 58.484 | 37.500 | 0.00 | 0.00 | 36.83 | 3.01 |
3684 | 6670 | 5.759506 | TGTTCGCTGGTCAATAAAAAGAA | 57.240 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
3685 | 6671 | 5.759506 | TTGTTCGCTGGTCAATAAAAAGA | 57.240 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
3686 | 6672 | 7.168972 | TCAATTTGTTCGCTGGTCAATAAAAAG | 59.831 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
3687 | 6673 | 6.980978 | TCAATTTGTTCGCTGGTCAATAAAAA | 59.019 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
3688 | 6674 | 6.507900 | TCAATTTGTTCGCTGGTCAATAAAA | 58.492 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
3689 | 6675 | 6.078202 | TCAATTTGTTCGCTGGTCAATAAA | 57.922 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3690 | 6676 | 5.697473 | TCAATTTGTTCGCTGGTCAATAA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 1.40 |
3691 | 6677 | 5.895636 | ATCAATTTGTTCGCTGGTCAATA | 57.104 | 34.783 | 0.00 | 0.00 | 0.00 | 1.90 |
3692 | 6678 | 4.789012 | ATCAATTTGTTCGCTGGTCAAT | 57.211 | 36.364 | 0.00 | 0.00 | 0.00 | 2.57 |
3693 | 6679 | 4.582701 | AATCAATTTGTTCGCTGGTCAA | 57.417 | 36.364 | 0.00 | 0.00 | 0.00 | 3.18 |
3694 | 6680 | 5.009110 | TGTTAATCAATTTGTTCGCTGGTCA | 59.991 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3695 | 6681 | 5.457140 | TGTTAATCAATTTGTTCGCTGGTC | 58.543 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
3696 | 6682 | 5.446143 | TGTTAATCAATTTGTTCGCTGGT | 57.554 | 34.783 | 0.00 | 0.00 | 0.00 | 4.00 |
3697 | 6683 | 6.420604 | AGTTTGTTAATCAATTTGTTCGCTGG | 59.579 | 34.615 | 0.00 | 0.00 | 35.84 | 4.85 |
3698 | 6684 | 7.275785 | CAGTTTGTTAATCAATTTGTTCGCTG | 58.724 | 34.615 | 0.00 | 0.00 | 35.84 | 5.18 |
3699 | 6685 | 6.074356 | GCAGTTTGTTAATCAATTTGTTCGCT | 60.074 | 34.615 | 0.00 | 0.00 | 35.84 | 4.93 |
3700 | 6686 | 6.064525 | GCAGTTTGTTAATCAATTTGTTCGC | 58.935 | 36.000 | 0.00 | 0.00 | 35.84 | 4.70 |
3701 | 6687 | 6.580476 | GGCAGTTTGTTAATCAATTTGTTCG | 58.420 | 36.000 | 0.00 | 0.00 | 35.84 | 3.95 |
3702 | 6688 | 6.200097 | ACGGCAGTTTGTTAATCAATTTGTTC | 59.800 | 34.615 | 0.00 | 0.00 | 35.84 | 3.18 |
3703 | 6689 | 6.045955 | ACGGCAGTTTGTTAATCAATTTGTT | 58.954 | 32.000 | 0.00 | 0.00 | 35.84 | 2.83 |
3704 | 6690 | 5.596845 | ACGGCAGTTTGTTAATCAATTTGT | 58.403 | 33.333 | 0.00 | 0.00 | 35.84 | 2.83 |
3705 | 6691 | 6.420604 | AGAACGGCAGTTTGTTAATCAATTTG | 59.579 | 34.615 | 3.10 | 0.00 | 41.34 | 2.32 |
3706 | 6692 | 6.420604 | CAGAACGGCAGTTTGTTAATCAATTT | 59.579 | 34.615 | 3.10 | 0.00 | 41.34 | 1.82 |
3707 | 6693 | 5.920273 | CAGAACGGCAGTTTGTTAATCAATT | 59.080 | 36.000 | 3.10 | 0.00 | 41.34 | 2.32 |
3708 | 6694 | 5.009610 | ACAGAACGGCAGTTTGTTAATCAAT | 59.990 | 36.000 | 3.10 | 0.00 | 41.34 | 2.57 |
3709 | 6695 | 4.336993 | ACAGAACGGCAGTTTGTTAATCAA | 59.663 | 37.500 | 3.10 | 0.00 | 41.34 | 2.57 |
3710 | 6696 | 3.880490 | ACAGAACGGCAGTTTGTTAATCA | 59.120 | 39.130 | 3.10 | 0.00 | 41.34 | 2.57 |
3711 | 6697 | 4.483476 | ACAGAACGGCAGTTTGTTAATC | 57.517 | 40.909 | 3.10 | 0.00 | 41.34 | 1.75 |
3712 | 6698 | 4.911514 | AACAGAACGGCAGTTTGTTAAT | 57.088 | 36.364 | 19.89 | 5.69 | 41.34 | 1.40 |
3713 | 6699 | 4.877251 | ACTAACAGAACGGCAGTTTGTTAA | 59.123 | 37.500 | 23.22 | 14.75 | 41.34 | 2.01 |
3714 | 6700 | 4.444536 | ACTAACAGAACGGCAGTTTGTTA | 58.555 | 39.130 | 22.46 | 22.46 | 41.34 | 2.41 |
3715 | 6701 | 3.275999 | ACTAACAGAACGGCAGTTTGTT | 58.724 | 40.909 | 22.57 | 22.57 | 41.34 | 2.83 |
3716 | 6702 | 2.914059 | ACTAACAGAACGGCAGTTTGT | 58.086 | 42.857 | 3.10 | 7.57 | 41.34 | 2.83 |
3717 | 6703 | 3.560068 | AGAACTAACAGAACGGCAGTTTG | 59.440 | 43.478 | 3.10 | 6.97 | 41.34 | 2.93 |
3718 | 6704 | 3.805207 | AGAACTAACAGAACGGCAGTTT | 58.195 | 40.909 | 3.10 | 0.00 | 41.34 | 2.66 |
3719 | 6705 | 3.470645 | AGAACTAACAGAACGGCAGTT | 57.529 | 42.857 | 0.50 | 0.50 | 44.47 | 3.16 |
3720 | 6706 | 3.470645 | AAGAACTAACAGAACGGCAGT | 57.529 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
3721 | 6707 | 4.058817 | AGAAAGAACTAACAGAACGGCAG | 58.941 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
3722 | 6708 | 4.067972 | AGAAAGAACTAACAGAACGGCA | 57.932 | 40.909 | 0.00 | 0.00 | 0.00 | 5.69 |
3723 | 6709 | 6.723131 | ATAAGAAAGAACTAACAGAACGGC | 57.277 | 37.500 | 0.00 | 0.00 | 0.00 | 5.68 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.