Multiple sequence alignment - TraesCS5B01G494500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G494500 chr5B 100.000 3974 0 0 1 3974 662453135 662457108 0.000000e+00 7339.0
1 TraesCS5B01G494500 chr5B 94.326 141 7 1 3132 3271 482995334 482995474 8.650000e-52 215.0
2 TraesCS5B01G494500 chr5B 87.349 166 19 2 50 215 87143241 87143078 5.240000e-44 189.0
3 TraesCS5B01G494500 chr5B 93.750 48 1 1 1 46 673803856 673803903 1.980000e-08 71.3
4 TraesCS5B01G494500 chr5D 92.881 2978 89 48 253 3143 526686623 526689564 0.000000e+00 4211.0
5 TraesCS5B01G494500 chr5D 94.274 716 35 5 3264 3974 526689561 526690275 0.000000e+00 1090.0
6 TraesCS5B01G494500 chr5D 94.326 141 7 1 3127 3266 211375763 211375623 8.650000e-52 215.0
7 TraesCS5B01G494500 chr5D 93.617 47 2 1 1 46 34831518 34831472 7.130000e-08 69.4
8 TraesCS5B01G494500 chr5A 89.662 2989 149 73 253 3143 653847279 653850205 0.000000e+00 3661.0
9 TraesCS5B01G494500 chr5A 93.370 724 32 10 3264 3974 653850202 653850922 0.000000e+00 1057.0
10 TraesCS5B01G494500 chr2B 96.350 137 3 2 3132 3266 655599742 655599878 1.440000e-54 224.0
11 TraesCS5B01G494500 chr2B 88.125 160 18 1 50 209 29120833 29120991 5.240000e-44 189.0
12 TraesCS5B01G494500 chr2B 95.745 47 0 1 1 45 534998941 534998895 1.530000e-09 75.0
13 TraesCS5B01G494500 chr3D 94.521 146 5 3 3137 3281 614251221 614251078 5.170000e-54 222.0
14 TraesCS5B01G494500 chr1B 96.992 133 2 2 3141 3272 417425153 417425284 5.170000e-54 222.0
15 TraesCS5B01G494500 chr1B 96.296 135 3 2 3138 3271 623732114 623731981 1.860000e-53 220.0
16 TraesCS5B01G494500 chr1B 85.366 164 22 2 50 213 268604574 268604413 6.830000e-38 169.0
17 TraesCS5B01G494500 chr7B 90.000 170 16 1 49 218 708090293 708090125 6.690000e-53 219.0
18 TraesCS5B01G494500 chr7B 96.094 128 3 2 3141 3267 372834983 372835109 1.450000e-49 207.0
19 TraesCS5B01G494500 chr4A 94.326 141 6 2 3141 3279 729151968 729151828 8.650000e-52 215.0
20 TraesCS5B01G494500 chr2D 94.326 141 6 2 3140 3279 536091026 536091165 8.650000e-52 215.0
21 TraesCS5B01G494500 chr1A 86.905 168 19 3 49 215 428981481 428981316 6.780000e-43 185.0
22 TraesCS5B01G494500 chr7D 85.549 173 22 3 50 222 199530332 199530163 1.130000e-40 178.0
23 TraesCS5B01G494500 chr7D 86.228 167 20 3 50 215 241171191 241171027 1.130000e-40 178.0
24 TraesCS5B01G494500 chr7D 85.294 170 23 2 50 218 435423723 435423555 1.470000e-39 174.0
25 TraesCS5B01G494500 chr6D 84.483 174 26 1 55 228 22101944 22101772 1.900000e-38 171.0
26 TraesCS5B01G494500 chr3B 93.617 47 2 1 1 46 565784167 565784213 7.130000e-08 69.4
27 TraesCS5B01G494500 chr1D 92.000 50 2 1 1 48 60074510 60074461 7.130000e-08 69.4
28 TraesCS5B01G494500 chr2A 93.478 46 2 1 1 45 222674653 222674608 2.560000e-07 67.6
29 TraesCS5B01G494500 chr7A 96.970 33 1 0 13 45 248887239 248887207 5.550000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G494500 chr5B 662453135 662457108 3973 False 7339.0 7339 100.0000 1 3974 1 chr5B.!!$F2 3973
1 TraesCS5B01G494500 chr5D 526686623 526690275 3652 False 2650.5 4211 93.5775 253 3974 2 chr5D.!!$F1 3721
2 TraesCS5B01G494500 chr5A 653847279 653850922 3643 False 2359.0 3661 91.5160 253 3974 2 chr5A.!!$F1 3721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.036765 AATCCTGGTGCTCGCGTTTA 60.037 50.0 5.77 0.0 0.00 2.01 F
247 248 0.036765 TTTCCATGACTCGAACCCGG 60.037 55.0 0.00 0.0 36.24 5.73 F
250 251 0.530650 CCATGACTCGAACCCGGATG 60.531 60.0 0.73 0.0 36.24 3.51 F
657 731 0.692756 CTTCCTTCCTCCTCCCTCCC 60.693 65.0 0.00 0.0 0.00 4.30 F
1099 1215 0.838122 CTTCTCCCTCCACCACCACT 60.838 60.0 0.00 0.0 0.00 4.00 F
1518 1649 0.952497 ACATGTTCGTCAGCAGCAGG 60.952 55.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1320 1436 0.672711 AGGACTCGTCGTCGTCATCA 60.673 55.000 15.50 0.00 43.79 3.07 R
1854 1985 0.804989 GGGCACAGTGTATGAGCAAC 59.195 55.000 1.61 0.00 46.22 4.17 R
2094 2225 2.484062 CCTGATGAACGGGCATGCC 61.484 63.158 29.47 29.47 38.29 4.40 R
2310 2441 1.136984 CGTCGCCTCTAAACGCTCT 59.863 57.895 0.00 0.00 0.00 4.09 R
2722 2853 1.300697 AGGCGACCACGTTGAGAAC 60.301 57.895 0.00 0.00 41.98 3.01 R
3249 3409 0.702902 AGGTACTCCCTCCGTCTCAA 59.297 55.000 0.00 0.00 40.71 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.712122 TTTAATTTCTGCAACGATCCCC 57.288 40.909 0.00 0.00 0.00 4.81
36 37 2.214376 AATTTCTGCAACGATCCCCA 57.786 45.000 0.00 0.00 0.00 4.96
37 38 2.214376 ATTTCTGCAACGATCCCCAA 57.786 45.000 0.00 0.00 0.00 4.12
38 39 1.243902 TTTCTGCAACGATCCCCAAC 58.756 50.000 0.00 0.00 0.00 3.77
39 40 0.109532 TTCTGCAACGATCCCCAACA 59.890 50.000 0.00 0.00 0.00 3.33
40 41 0.109532 TCTGCAACGATCCCCAACAA 59.890 50.000 0.00 0.00 0.00 2.83
41 42 0.958091 CTGCAACGATCCCCAACAAA 59.042 50.000 0.00 0.00 0.00 2.83
42 43 1.339610 CTGCAACGATCCCCAACAAAA 59.660 47.619 0.00 0.00 0.00 2.44
43 44 1.757118 TGCAACGATCCCCAACAAAAA 59.243 42.857 0.00 0.00 0.00 1.94
44 45 2.223923 TGCAACGATCCCCAACAAAAAG 60.224 45.455 0.00 0.00 0.00 2.27
45 46 2.035321 GCAACGATCCCCAACAAAAAGA 59.965 45.455 0.00 0.00 0.00 2.52
46 47 3.638484 CAACGATCCCCAACAAAAAGAC 58.362 45.455 0.00 0.00 0.00 3.01
47 48 2.235891 ACGATCCCCAACAAAAAGACC 58.764 47.619 0.00 0.00 0.00 3.85
48 49 2.235016 CGATCCCCAACAAAAAGACCA 58.765 47.619 0.00 0.00 0.00 4.02
49 50 2.825532 CGATCCCCAACAAAAAGACCAT 59.174 45.455 0.00 0.00 0.00 3.55
50 51 3.258123 CGATCCCCAACAAAAAGACCATT 59.742 43.478 0.00 0.00 0.00 3.16
51 52 4.618227 CGATCCCCAACAAAAAGACCATTC 60.618 45.833 0.00 0.00 0.00 2.67
52 53 3.647636 TCCCCAACAAAAAGACCATTCA 58.352 40.909 0.00 0.00 0.00 2.57
53 54 3.640967 TCCCCAACAAAAAGACCATTCAG 59.359 43.478 0.00 0.00 0.00 3.02
54 55 3.640967 CCCCAACAAAAAGACCATTCAGA 59.359 43.478 0.00 0.00 0.00 3.27
55 56 4.100808 CCCCAACAAAAAGACCATTCAGAA 59.899 41.667 0.00 0.00 0.00 3.02
56 57 5.221702 CCCCAACAAAAAGACCATTCAGAAT 60.222 40.000 0.00 0.00 0.00 2.40
57 58 5.928264 CCCAACAAAAAGACCATTCAGAATC 59.072 40.000 0.00 0.00 0.00 2.52
58 59 5.928264 CCAACAAAAAGACCATTCAGAATCC 59.072 40.000 0.00 0.00 0.00 3.01
59 60 6.239402 CCAACAAAAAGACCATTCAGAATCCT 60.239 38.462 0.00 0.00 0.00 3.24
60 61 6.336842 ACAAAAAGACCATTCAGAATCCTG 57.663 37.500 0.00 0.00 41.74 3.86
61 62 5.244626 ACAAAAAGACCATTCAGAATCCTGG 59.755 40.000 0.00 0.00 40.76 4.45
62 63 4.664688 AAAGACCATTCAGAATCCTGGT 57.335 40.909 6.62 6.62 44.52 4.00
63 64 3.641434 AGACCATTCAGAATCCTGGTG 57.359 47.619 11.07 0.00 41.96 4.17
64 65 2.019984 GACCATTCAGAATCCTGGTGC 58.980 52.381 11.07 1.38 41.96 5.01
65 66 1.637553 ACCATTCAGAATCCTGGTGCT 59.362 47.619 6.17 0.00 40.43 4.40
66 67 2.295885 CCATTCAGAATCCTGGTGCTC 58.704 52.381 0.00 0.00 40.76 4.26
67 68 1.938577 CATTCAGAATCCTGGTGCTCG 59.061 52.381 0.00 0.00 40.76 5.03
68 69 0.391661 TTCAGAATCCTGGTGCTCGC 60.392 55.000 0.00 0.00 40.76 5.03
69 70 2.169789 CAGAATCCTGGTGCTCGCG 61.170 63.158 0.00 0.00 36.77 5.87
70 71 2.125512 GAATCCTGGTGCTCGCGT 60.126 61.111 5.77 0.00 0.00 6.01
71 72 1.741770 GAATCCTGGTGCTCGCGTT 60.742 57.895 5.77 0.00 0.00 4.84
72 73 1.298859 GAATCCTGGTGCTCGCGTTT 61.299 55.000 5.77 0.00 0.00 3.60
73 74 0.036765 AATCCTGGTGCTCGCGTTTA 60.037 50.000 5.77 0.00 0.00 2.01
74 75 0.178068 ATCCTGGTGCTCGCGTTTAT 59.822 50.000 5.77 0.00 0.00 1.40
75 76 0.036765 TCCTGGTGCTCGCGTTTATT 60.037 50.000 5.77 0.00 0.00 1.40
76 77 0.096976 CCTGGTGCTCGCGTTTATTG 59.903 55.000 5.77 0.00 0.00 1.90
77 78 0.521242 CTGGTGCTCGCGTTTATTGC 60.521 55.000 5.77 3.13 0.00 3.56
78 79 0.953471 TGGTGCTCGCGTTTATTGCT 60.953 50.000 5.77 0.00 0.00 3.91
79 80 0.521242 GGTGCTCGCGTTTATTGCTG 60.521 55.000 5.77 0.00 0.00 4.41
80 81 0.521242 GTGCTCGCGTTTATTGCTGG 60.521 55.000 5.77 0.00 0.00 4.85
81 82 0.672091 TGCTCGCGTTTATTGCTGGA 60.672 50.000 5.77 0.00 0.00 3.86
82 83 0.657840 GCTCGCGTTTATTGCTGGAT 59.342 50.000 5.77 0.00 0.00 3.41
83 84 1.064060 GCTCGCGTTTATTGCTGGATT 59.936 47.619 5.77 0.00 0.00 3.01
84 85 2.477863 GCTCGCGTTTATTGCTGGATTT 60.478 45.455 5.77 0.00 0.00 2.17
85 86 3.242608 GCTCGCGTTTATTGCTGGATTTA 60.243 43.478 5.77 0.00 0.00 1.40
86 87 4.554723 GCTCGCGTTTATTGCTGGATTTAT 60.555 41.667 5.77 0.00 0.00 1.40
87 88 5.493133 TCGCGTTTATTGCTGGATTTATT 57.507 34.783 5.77 0.00 0.00 1.40
88 89 5.885881 TCGCGTTTATTGCTGGATTTATTT 58.114 33.333 5.77 0.00 0.00 1.40
89 90 5.968848 TCGCGTTTATTGCTGGATTTATTTC 59.031 36.000 5.77 0.00 0.00 2.17
90 91 5.741510 CGCGTTTATTGCTGGATTTATTTCA 59.258 36.000 0.00 0.00 0.00 2.69
91 92 6.075415 CGCGTTTATTGCTGGATTTATTTCAG 60.075 38.462 0.00 0.00 0.00 3.02
92 93 6.198966 GCGTTTATTGCTGGATTTATTTCAGG 59.801 38.462 0.00 0.00 0.00 3.86
93 94 7.479980 CGTTTATTGCTGGATTTATTTCAGGA 58.520 34.615 0.00 0.00 0.00 3.86
94 95 8.137437 CGTTTATTGCTGGATTTATTTCAGGAT 58.863 33.333 0.00 0.00 0.00 3.24
95 96 9.822185 GTTTATTGCTGGATTTATTTCAGGATT 57.178 29.630 0.00 0.00 0.00 3.01
100 101 9.874205 TTGCTGGATTTATTTCAGGATTTTTAG 57.126 29.630 0.00 0.00 0.00 1.85
101 102 7.981225 TGCTGGATTTATTTCAGGATTTTTAGC 59.019 33.333 0.00 0.00 0.00 3.09
102 103 7.168135 GCTGGATTTATTTCAGGATTTTTAGCG 59.832 37.037 0.00 0.00 0.00 4.26
103 104 8.287439 TGGATTTATTTCAGGATTTTTAGCGA 57.713 30.769 0.00 0.00 0.00 4.93
104 105 8.912988 TGGATTTATTTCAGGATTTTTAGCGAT 58.087 29.630 0.00 0.00 0.00 4.58
105 106 9.185192 GGATTTATTTCAGGATTTTTAGCGATG 57.815 33.333 0.00 0.00 0.00 3.84
106 107 7.985634 TTTATTTCAGGATTTTTAGCGATGC 57.014 32.000 0.00 0.00 0.00 3.91
107 108 5.581126 ATTTCAGGATTTTTAGCGATGCA 57.419 34.783 0.00 0.00 0.00 3.96
108 109 4.355543 TTCAGGATTTTTAGCGATGCAC 57.644 40.909 0.00 0.00 0.00 4.57
109 110 3.342719 TCAGGATTTTTAGCGATGCACA 58.657 40.909 0.00 0.00 0.00 4.57
110 111 3.947196 TCAGGATTTTTAGCGATGCACAT 59.053 39.130 0.00 0.00 0.00 3.21
111 112 4.398988 TCAGGATTTTTAGCGATGCACATT 59.601 37.500 0.00 0.00 0.00 2.71
112 113 5.104374 CAGGATTTTTAGCGATGCACATTT 58.896 37.500 0.00 0.00 0.00 2.32
113 114 6.094742 TCAGGATTTTTAGCGATGCACATTTA 59.905 34.615 0.00 0.00 0.00 1.40
114 115 6.751425 CAGGATTTTTAGCGATGCACATTTAA 59.249 34.615 0.00 0.00 0.00 1.52
115 116 7.436080 CAGGATTTTTAGCGATGCACATTTAAT 59.564 33.333 0.00 0.00 0.00 1.40
116 117 7.436080 AGGATTTTTAGCGATGCACATTTAATG 59.564 33.333 3.07 3.07 0.00 1.90
117 118 6.884096 TTTTTAGCGATGCACATTTAATGG 57.116 33.333 9.88 0.03 33.60 3.16
118 119 4.566545 TTAGCGATGCACATTTAATGGG 57.433 40.909 9.88 6.34 36.54 4.00
119 120 2.653726 AGCGATGCACATTTAATGGGA 58.346 42.857 11.83 0.94 35.01 4.37
120 121 2.620115 AGCGATGCACATTTAATGGGAG 59.380 45.455 11.83 0.95 35.01 4.30
121 122 2.287788 GCGATGCACATTTAATGGGAGG 60.288 50.000 11.83 0.00 35.01 4.30
122 123 3.213506 CGATGCACATTTAATGGGAGGA 58.786 45.455 11.83 1.43 35.01 3.71
123 124 3.251729 CGATGCACATTTAATGGGAGGAG 59.748 47.826 11.83 0.00 35.01 3.69
124 125 4.464008 GATGCACATTTAATGGGAGGAGA 58.536 43.478 11.83 0.00 35.01 3.71
125 126 3.620488 TGCACATTTAATGGGAGGAGAC 58.380 45.455 11.83 0.00 35.01 3.36
126 127 2.614057 GCACATTTAATGGGAGGAGACG 59.386 50.000 11.83 0.00 35.01 4.18
127 128 3.873910 CACATTTAATGGGAGGAGACGT 58.126 45.455 9.88 0.00 35.01 4.34
128 129 4.261801 CACATTTAATGGGAGGAGACGTT 58.738 43.478 9.88 0.00 35.01 3.99
129 130 4.700213 CACATTTAATGGGAGGAGACGTTT 59.300 41.667 9.88 0.00 35.01 3.60
130 131 4.941873 ACATTTAATGGGAGGAGACGTTTC 59.058 41.667 9.88 0.00 33.60 2.78
131 132 4.903045 TTTAATGGGAGGAGACGTTTCT 57.097 40.909 6.02 0.00 33.37 2.52
132 133 6.070424 ACATTTAATGGGAGGAGACGTTTCTA 60.070 38.462 9.88 0.00 29.85 2.10
133 134 6.555463 TTTAATGGGAGGAGACGTTTCTAT 57.445 37.500 6.02 0.00 29.47 1.98
134 135 4.674281 AATGGGAGGAGACGTTTCTATC 57.326 45.455 6.02 4.91 29.47 2.08
135 136 2.022195 TGGGAGGAGACGTTTCTATCG 58.978 52.381 6.02 0.00 29.47 2.92
136 137 2.295885 GGGAGGAGACGTTTCTATCGA 58.704 52.381 6.02 0.00 29.47 3.59
137 138 2.033174 GGGAGGAGACGTTTCTATCGAC 59.967 54.545 6.02 0.00 29.47 4.20
138 139 2.286301 GGAGGAGACGTTTCTATCGACG 60.286 54.545 6.02 0.00 44.34 5.12
139 140 2.606725 GAGGAGACGTTTCTATCGACGA 59.393 50.000 6.02 0.00 41.53 4.20
140 141 2.351111 AGGAGACGTTTCTATCGACGAC 59.649 50.000 0.00 0.00 41.53 4.34
141 142 2.352404 GAGACGTTTCTATCGACGACG 58.648 52.381 0.00 0.00 41.53 5.12
142 143 2.028523 GAGACGTTTCTATCGACGACGA 59.971 50.000 13.07 13.07 41.94 4.20
143 144 3.837136 GAGACGTTTCTATCGACGACGAG 60.837 52.174 16.00 6.85 41.39 4.18
144 145 6.788155 GAGACGTTTCTATCGACGACGAGG 62.788 54.167 16.00 10.77 41.39 4.63
150 151 2.046988 TCGACGACGAGGTGGCTA 60.047 61.111 5.75 0.00 43.81 3.93
151 152 2.099831 CGACGACGAGGTGGCTAC 59.900 66.667 0.00 0.00 42.66 3.58
160 161 4.592426 GGTGGCTACCGTGACTTC 57.408 61.111 2.40 0.00 37.19 3.01
161 162 1.669440 GGTGGCTACCGTGACTTCA 59.331 57.895 2.40 0.00 37.19 3.02
162 163 0.249398 GGTGGCTACCGTGACTTCAT 59.751 55.000 2.40 0.00 37.19 2.57
163 164 1.479323 GGTGGCTACCGTGACTTCATA 59.521 52.381 2.40 0.00 37.19 2.15
164 165 2.093869 GGTGGCTACCGTGACTTCATAA 60.094 50.000 2.40 0.00 37.19 1.90
165 166 3.592059 GTGGCTACCGTGACTTCATAAA 58.408 45.455 0.00 0.00 0.00 1.40
166 167 4.189231 GTGGCTACCGTGACTTCATAAAT 58.811 43.478 0.00 0.00 0.00 1.40
167 168 4.634443 GTGGCTACCGTGACTTCATAAATT 59.366 41.667 0.00 0.00 0.00 1.82
168 169 5.123344 GTGGCTACCGTGACTTCATAAATTT 59.877 40.000 0.00 0.00 0.00 1.82
169 170 5.353123 TGGCTACCGTGACTTCATAAATTTC 59.647 40.000 0.00 0.00 0.00 2.17
170 171 5.353123 GGCTACCGTGACTTCATAAATTTCA 59.647 40.000 0.00 0.00 0.00 2.69
171 172 6.128117 GGCTACCGTGACTTCATAAATTTCAA 60.128 38.462 0.00 0.00 0.00 2.69
172 173 6.961554 GCTACCGTGACTTCATAAATTTCAAG 59.038 38.462 0.00 0.00 0.00 3.02
173 174 7.148474 GCTACCGTGACTTCATAAATTTCAAGA 60.148 37.037 0.00 0.00 0.00 3.02
174 175 7.687941 ACCGTGACTTCATAAATTTCAAGAT 57.312 32.000 0.00 0.00 0.00 2.40
175 176 7.530010 ACCGTGACTTCATAAATTTCAAGATG 58.470 34.615 0.00 0.00 0.00 2.90
176 177 7.390440 ACCGTGACTTCATAAATTTCAAGATGA 59.610 33.333 0.00 0.00 0.00 2.92
177 178 8.400947 CCGTGACTTCATAAATTTCAAGATGAT 58.599 33.333 0.00 0.00 0.00 2.45
185 186 9.573166 TCATAAATTTCAAGATGATATTCCGGT 57.427 29.630 0.00 0.00 28.96 5.28
188 189 7.880160 AATTTCAAGATGATATTCCGGTTCA 57.120 32.000 0.00 1.25 0.00 3.18
189 190 6.925610 TTTCAAGATGATATTCCGGTTCAG 57.074 37.500 0.00 0.00 0.00 3.02
190 191 5.614324 TCAAGATGATATTCCGGTTCAGT 57.386 39.130 0.00 0.00 0.00 3.41
191 192 5.601662 TCAAGATGATATTCCGGTTCAGTC 58.398 41.667 0.00 0.00 0.00 3.51
192 193 5.363868 TCAAGATGATATTCCGGTTCAGTCT 59.636 40.000 0.00 4.11 0.00 3.24
193 194 5.878406 AGATGATATTCCGGTTCAGTCTT 57.122 39.130 0.00 0.00 0.00 3.01
194 195 6.240549 AGATGATATTCCGGTTCAGTCTTT 57.759 37.500 0.00 0.00 0.00 2.52
195 196 6.284459 AGATGATATTCCGGTTCAGTCTTTC 58.716 40.000 0.00 0.00 0.00 2.62
196 197 4.430007 TGATATTCCGGTTCAGTCTTTCG 58.570 43.478 0.00 0.00 0.00 3.46
197 198 4.158949 TGATATTCCGGTTCAGTCTTTCGA 59.841 41.667 0.00 0.00 0.00 3.71
198 199 2.894763 TTCCGGTTCAGTCTTTCGAA 57.105 45.000 0.00 0.00 0.00 3.71
199 200 2.433868 TCCGGTTCAGTCTTTCGAAG 57.566 50.000 0.00 0.00 0.00 3.79
200 201 1.000506 TCCGGTTCAGTCTTTCGAAGG 59.999 52.381 0.00 0.00 0.00 3.46
201 202 1.270147 CCGGTTCAGTCTTTCGAAGGT 60.270 52.381 7.20 0.00 0.00 3.50
202 203 1.792949 CGGTTCAGTCTTTCGAAGGTG 59.207 52.381 7.20 0.00 0.00 4.00
203 204 1.531578 GGTTCAGTCTTTCGAAGGTGC 59.468 52.381 7.20 2.27 0.00 5.01
204 205 2.484889 GTTCAGTCTTTCGAAGGTGCT 58.515 47.619 7.20 4.49 0.00 4.40
205 206 2.440539 TCAGTCTTTCGAAGGTGCTC 57.559 50.000 7.20 0.00 0.00 4.26
206 207 1.686587 TCAGTCTTTCGAAGGTGCTCA 59.313 47.619 7.20 0.00 0.00 4.26
207 208 2.300152 TCAGTCTTTCGAAGGTGCTCAT 59.700 45.455 7.20 0.00 0.00 2.90
208 209 3.509967 TCAGTCTTTCGAAGGTGCTCATA 59.490 43.478 7.20 0.00 0.00 2.15
209 210 4.021456 TCAGTCTTTCGAAGGTGCTCATAA 60.021 41.667 7.20 0.00 0.00 1.90
210 211 4.328440 CAGTCTTTCGAAGGTGCTCATAAG 59.672 45.833 7.20 0.00 0.00 1.73
211 212 3.619038 GTCTTTCGAAGGTGCTCATAAGG 59.381 47.826 7.20 0.00 0.00 2.69
212 213 3.513912 TCTTTCGAAGGTGCTCATAAGGA 59.486 43.478 7.20 0.00 0.00 3.36
213 214 4.162320 TCTTTCGAAGGTGCTCATAAGGAT 59.838 41.667 7.20 0.00 0.00 3.24
214 215 5.362717 TCTTTCGAAGGTGCTCATAAGGATA 59.637 40.000 7.20 0.00 0.00 2.59
215 216 5.808366 TTCGAAGGTGCTCATAAGGATAT 57.192 39.130 0.00 0.00 0.00 1.63
216 217 5.139435 TCGAAGGTGCTCATAAGGATATG 57.861 43.478 0.00 0.00 40.29 1.78
217 218 4.832823 TCGAAGGTGCTCATAAGGATATGA 59.167 41.667 0.00 0.00 44.38 2.15
233 234 8.918202 AAGGATATGAGCGTTTATATTTTCCA 57.082 30.769 0.00 0.00 0.00 3.53
234 235 9.520515 AAGGATATGAGCGTTTATATTTTCCAT 57.479 29.630 0.00 0.00 0.00 3.41
235 236 8.950210 AGGATATGAGCGTTTATATTTTCCATG 58.050 33.333 0.00 0.00 0.00 3.66
236 237 8.946085 GGATATGAGCGTTTATATTTTCCATGA 58.054 33.333 0.00 0.00 0.00 3.07
237 238 9.760660 GATATGAGCGTTTATATTTTCCATGAC 57.239 33.333 0.00 0.00 0.00 3.06
238 239 7.807977 ATGAGCGTTTATATTTTCCATGACT 57.192 32.000 0.00 0.00 0.00 3.41
239 240 7.246674 TGAGCGTTTATATTTTCCATGACTC 57.753 36.000 0.00 0.00 0.00 3.36
240 241 6.019075 TGAGCGTTTATATTTTCCATGACTCG 60.019 38.462 0.00 0.00 0.00 4.18
241 242 6.046593 AGCGTTTATATTTTCCATGACTCGA 58.953 36.000 0.00 0.00 0.00 4.04
242 243 6.537301 AGCGTTTATATTTTCCATGACTCGAA 59.463 34.615 0.00 0.00 0.00 3.71
243 244 6.627671 GCGTTTATATTTTCCATGACTCGAAC 59.372 38.462 0.00 0.00 0.00 3.95
244 245 7.123830 CGTTTATATTTTCCATGACTCGAACC 58.876 38.462 0.00 0.00 0.00 3.62
245 246 7.415229 GTTTATATTTTCCATGACTCGAACCC 58.585 38.462 0.00 0.00 0.00 4.11
246 247 1.803334 TTTTCCATGACTCGAACCCG 58.197 50.000 0.00 0.00 37.07 5.28
247 248 0.036765 TTTCCATGACTCGAACCCGG 60.037 55.000 0.00 0.00 36.24 5.73
248 249 0.901114 TTCCATGACTCGAACCCGGA 60.901 55.000 0.73 0.00 36.24 5.14
249 250 0.686441 TCCATGACTCGAACCCGGAT 60.686 55.000 0.73 0.00 36.24 4.18
250 251 0.530650 CCATGACTCGAACCCGGATG 60.531 60.000 0.73 0.00 36.24 3.51
251 252 0.530650 CATGACTCGAACCCGGATGG 60.531 60.000 0.73 0.00 41.37 3.51
278 283 2.881111 ATGAGCCATCCATCCATCTG 57.119 50.000 0.00 0.00 0.00 2.90
309 314 2.233654 CGGCGAGCGGAGAAGATTG 61.234 63.158 0.00 0.00 0.00 2.67
314 319 1.078143 AGCGGAGAAGATTGGTGGC 60.078 57.895 0.00 0.00 0.00 5.01
359 381 2.193248 CATTCCCTTCTCCCCGCC 59.807 66.667 0.00 0.00 0.00 6.13
360 382 2.286121 ATTCCCTTCTCCCCGCCA 60.286 61.111 0.00 0.00 0.00 5.69
412 460 4.778143 GCAATCCCCGTCGCCACT 62.778 66.667 0.00 0.00 0.00 4.00
428 481 2.251386 ACTCCCCCTTCCCTCCGTA 61.251 63.158 0.00 0.00 0.00 4.02
429 482 1.002533 CTCCCCCTTCCCTCCGTAA 59.997 63.158 0.00 0.00 0.00 3.18
437 500 5.311265 CCCCTTCCCTCCGTAATTTATTAC 58.689 45.833 3.11 3.11 39.32 1.89
439 502 5.995897 CCCTTCCCTCCGTAATTTATTACTG 59.004 44.000 10.07 4.85 40.27 2.74
441 504 4.964593 TCCCTCCGTAATTTATTACTGCC 58.035 43.478 10.07 0.00 40.27 4.85
515 578 3.430931 CGGAAAAAGACGCAACTTTTGA 58.569 40.909 15.29 0.00 45.43 2.69
516 579 3.482110 CGGAAAAAGACGCAACTTTTGAG 59.518 43.478 15.29 8.55 45.43 3.02
517 580 3.242944 GGAAAAAGACGCAACTTTTGAGC 59.757 43.478 15.29 9.79 45.43 4.26
641 715 2.046285 CACCAATCACCCCCGCTTC 61.046 63.158 0.00 0.00 0.00 3.86
657 731 0.692756 CTTCCTTCCTCCTCCCTCCC 60.693 65.000 0.00 0.00 0.00 4.30
658 732 1.162951 TTCCTTCCTCCTCCCTCCCT 61.163 60.000 0.00 0.00 0.00 4.20
660 734 1.074850 CTTCCTCCTCCCTCCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
661 735 1.866997 TTCCTCCTCCCTCCCTCCA 60.867 63.158 0.00 0.00 0.00 3.86
662 736 1.891296 TTCCTCCTCCCTCCCTCCAG 61.891 65.000 0.00 0.00 0.00 3.86
663 737 2.328589 CCTCCTCCCTCCCTCCAGA 61.329 68.421 0.00 0.00 0.00 3.86
664 738 1.075600 CTCCTCCCTCCCTCCAGAC 60.076 68.421 0.00 0.00 0.00 3.51
665 739 1.547755 TCCTCCCTCCCTCCAGACT 60.548 63.158 0.00 0.00 0.00 3.24
666 740 1.075600 CCTCCCTCCCTCCAGACTC 60.076 68.421 0.00 0.00 0.00 3.36
667 741 1.075600 CTCCCTCCCTCCAGACTCC 60.076 68.421 0.00 0.00 0.00 3.85
668 742 2.041405 CCCTCCCTCCAGACTCCC 60.041 72.222 0.00 0.00 0.00 4.30
687 761 1.321074 CGAGCCTCGGGGTTTCTAGT 61.321 60.000 6.13 0.00 36.00 2.57
766 840 3.127352 CTCTCCCACGCTACCGCTC 62.127 68.421 0.00 0.00 38.22 5.03
778 852 4.880537 CCGCTCGCTACTGGCCTG 62.881 72.222 8.29 8.29 37.74 4.85
869 953 1.365633 GGGAGCGAGCAATCGATCT 59.634 57.895 14.50 0.00 46.23 2.75
970 1086 1.018226 CGGCAGCAGAGTCTTCAAGG 61.018 60.000 0.00 0.00 0.00 3.61
973 1089 2.075338 GCAGCAGAGTCTTCAAGGAAG 58.925 52.381 0.00 0.00 40.65 3.46
974 1090 2.697654 CAGCAGAGTCTTCAAGGAAGG 58.302 52.381 6.17 0.00 39.82 3.46
975 1091 1.627834 AGCAGAGTCTTCAAGGAAGGG 59.372 52.381 6.17 0.00 39.82 3.95
976 1092 1.625818 GCAGAGTCTTCAAGGAAGGGA 59.374 52.381 6.17 0.00 39.82 4.20
1029 1145 1.734137 CGAGGATGTGGAGTACGGG 59.266 63.158 0.00 0.00 0.00 5.28
1099 1215 0.838122 CTTCTCCCTCCACCACCACT 60.838 60.000 0.00 0.00 0.00 4.00
1104 1220 1.677552 CCTCCACCACCACTACCAC 59.322 63.158 0.00 0.00 0.00 4.16
1110 1226 1.374947 CCACCACTACCACCACCAG 59.625 63.158 0.00 0.00 0.00 4.00
1111 1227 1.302511 CACCACTACCACCACCAGC 60.303 63.158 0.00 0.00 0.00 4.85
1112 1228 1.768482 ACCACTACCACCACCAGCA 60.768 57.895 0.00 0.00 0.00 4.41
1194 1310 2.895372 GCCCATTACCAGCCGTCG 60.895 66.667 0.00 0.00 0.00 5.12
1248 1364 4.065281 CCCGTCTCGACCACCACC 62.065 72.222 0.00 0.00 0.00 4.61
1251 1367 2.257676 GTCTCGACCACCACCGAC 59.742 66.667 0.00 0.00 0.00 4.79
1518 1649 0.952497 ACATGTTCGTCAGCAGCAGG 60.952 55.000 0.00 0.00 0.00 4.85
1806 1937 3.689002 GAGAGGGCGCAAGAAGGGG 62.689 68.421 10.83 0.00 43.02 4.79
2040 2171 1.868251 CGTCTACCGCTCGCTTGTC 60.868 63.158 0.00 0.00 0.00 3.18
2094 2225 8.322906 TGAAAATATTCAAGCTATATGGGACG 57.677 34.615 0.00 0.00 42.47 4.79
2328 2459 1.134530 CAGAGCGTTTAGAGGCGACG 61.135 60.000 0.00 0.00 41.39 5.12
2367 2498 3.684788 AGTACGCCAAGATGTTTCATGTC 59.315 43.478 0.00 0.00 0.00 3.06
2520 2651 2.802106 GAGAGCCCGAGGAAGACG 59.198 66.667 0.00 0.00 0.00 4.18
2577 2708 1.206578 CATCCACGCGGTTGTCAAC 59.793 57.895 12.47 7.20 0.00 3.18
2715 2846 2.973694 TCGAAAGGGAATACTTCGGG 57.026 50.000 3.88 0.00 0.00 5.14
2722 2853 1.069258 GAATACTTCGGGCGGGAGG 59.931 63.158 5.26 0.00 0.00 4.30
2739 2870 2.315386 GGTTCTCAACGTGGTCGCC 61.315 63.158 0.00 0.00 41.18 5.54
2850 2981 3.312421 TGCTTCAAGAGTCGGTGAAAAAG 59.688 43.478 11.82 4.16 33.52 2.27
2985 3116 7.620094 TGGAAACCTAGCTAGAACTTTAGAGAT 59.380 37.037 22.70 0.00 0.00 2.75
3012 3143 4.009675 TGCCTGGTACATTTCATCACTTC 58.990 43.478 0.00 0.00 38.20 3.01
3018 3172 7.809806 CCTGGTACATTTCATCACTTCTTTTTC 59.190 37.037 0.00 0.00 38.20 2.29
3092 3252 0.615331 TGGGAGCAGAGTTGATGGAC 59.385 55.000 0.00 0.00 0.00 4.02
3139 3299 6.154445 ACAGAAGCTTCTTGCATATGTTTTG 58.846 36.000 26.44 13.24 41.18 2.44
3140 3300 6.154445 CAGAAGCTTCTTGCATATGTTTTGT 58.846 36.000 26.44 0.00 45.94 2.83
3141 3301 7.040478 ACAGAAGCTTCTTGCATATGTTTTGTA 60.040 33.333 26.44 0.00 41.18 2.41
3142 3302 7.272084 CAGAAGCTTCTTGCATATGTTTTGTAC 59.728 37.037 26.44 0.00 45.94 2.90
3143 3303 6.824305 AGCTTCTTGCATATGTTTTGTACT 57.176 33.333 4.29 0.00 45.94 2.73
3144 3304 6.846350 AGCTTCTTGCATATGTTTTGTACTC 58.154 36.000 4.29 0.00 45.94 2.59
3145 3305 6.030228 GCTTCTTGCATATGTTTTGTACTCC 58.970 40.000 4.29 0.00 42.31 3.85
3146 3306 6.127897 GCTTCTTGCATATGTTTTGTACTCCT 60.128 38.462 4.29 0.00 42.31 3.69
3147 3307 6.985188 TCTTGCATATGTTTTGTACTCCTC 57.015 37.500 4.29 0.00 0.00 3.71
3148 3308 5.880332 TCTTGCATATGTTTTGTACTCCTCC 59.120 40.000 4.29 0.00 0.00 4.30
3149 3309 4.188462 TGCATATGTTTTGTACTCCTCCG 58.812 43.478 4.29 0.00 0.00 4.63
3150 3310 4.189231 GCATATGTTTTGTACTCCTCCGT 58.811 43.478 4.29 0.00 0.00 4.69
3151 3311 4.270325 GCATATGTTTTGTACTCCTCCGTC 59.730 45.833 4.29 0.00 0.00 4.79
3152 3312 2.825861 TGTTTTGTACTCCTCCGTCC 57.174 50.000 0.00 0.00 0.00 4.79
3153 3313 1.345415 TGTTTTGTACTCCTCCGTCCC 59.655 52.381 0.00 0.00 0.00 4.46
3154 3314 1.345415 GTTTTGTACTCCTCCGTCCCA 59.655 52.381 0.00 0.00 0.00 4.37
3155 3315 1.719529 TTTGTACTCCTCCGTCCCAA 58.280 50.000 0.00 0.00 0.00 4.12
3156 3316 1.719529 TTGTACTCCTCCGTCCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
3157 3317 1.719529 TGTACTCCTCCGTCCCAAAA 58.280 50.000 0.00 0.00 0.00 2.44
3158 3318 2.262637 TGTACTCCTCCGTCCCAAAAT 58.737 47.619 0.00 0.00 0.00 1.82
3159 3319 2.640826 TGTACTCCTCCGTCCCAAAATT 59.359 45.455 0.00 0.00 0.00 1.82
3160 3320 2.491675 ACTCCTCCGTCCCAAAATTC 57.508 50.000 0.00 0.00 0.00 2.17
3161 3321 1.985895 ACTCCTCCGTCCCAAAATTCT 59.014 47.619 0.00 0.00 0.00 2.40
3162 3322 2.375509 ACTCCTCCGTCCCAAAATTCTT 59.624 45.455 0.00 0.00 0.00 2.52
3163 3323 2.749621 CTCCTCCGTCCCAAAATTCTTG 59.250 50.000 0.00 0.00 0.00 3.02
3164 3324 2.107552 TCCTCCGTCCCAAAATTCTTGT 59.892 45.455 0.00 0.00 0.00 3.16
3165 3325 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3166 3326 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3167 3327 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3168 3328 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3169 3329 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3170 3330 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3171 3331 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3172 3332 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3173 3333 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3174 3334 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3175 3335 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3176 3336 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3177 3337 7.814587 CCCAAAATTCTTGTCTTAGATTTGTCC 59.185 37.037 0.00 0.00 28.79 4.02
3178 3338 8.359642 CCAAAATTCTTGTCTTAGATTTGTCCA 58.640 33.333 0.00 0.00 28.79 4.02
3179 3339 9.748708 CAAAATTCTTGTCTTAGATTTGTCCAA 57.251 29.630 0.00 0.00 0.00 3.53
3184 3344 8.251750 TCTTGTCTTAGATTTGTCCAAATACG 57.748 34.615 5.29 0.00 40.77 3.06
3185 3345 6.978343 TGTCTTAGATTTGTCCAAATACGG 57.022 37.500 5.29 0.00 40.77 4.02
3186 3346 6.703319 TGTCTTAGATTTGTCCAAATACGGA 58.297 36.000 5.29 0.82 40.77 4.69
3187 3347 7.335627 TGTCTTAGATTTGTCCAAATACGGAT 58.664 34.615 5.29 0.00 40.77 4.18
3188 3348 7.279981 TGTCTTAGATTTGTCCAAATACGGATG 59.720 37.037 5.29 0.00 40.77 3.51
3189 3349 7.280205 GTCTTAGATTTGTCCAAATACGGATGT 59.720 37.037 5.29 0.00 40.77 3.06
3190 3350 8.479689 TCTTAGATTTGTCCAAATACGGATGTA 58.520 33.333 5.29 0.00 40.77 2.29
3191 3351 9.273016 CTTAGATTTGTCCAAATACGGATGTAT 57.727 33.333 5.29 0.00 43.14 2.29
3192 3352 7.730364 AGATTTGTCCAAATACGGATGTATC 57.270 36.000 5.29 0.00 40.42 2.24
3193 3353 7.279615 AGATTTGTCCAAATACGGATGTATCA 58.720 34.615 5.29 0.00 40.42 2.15
3194 3354 7.773224 AGATTTGTCCAAATACGGATGTATCAA 59.227 33.333 5.29 0.00 40.42 2.57
3195 3355 6.918892 TTGTCCAAATACGGATGTATCAAG 57.081 37.500 0.00 0.00 40.42 3.02
3196 3356 5.984725 TGTCCAAATACGGATGTATCAAGT 58.015 37.500 0.00 0.00 40.42 3.16
3197 3357 6.046593 TGTCCAAATACGGATGTATCAAGTC 58.953 40.000 0.00 0.00 40.42 3.01
3198 3358 6.046593 GTCCAAATACGGATGTATCAAGTCA 58.953 40.000 0.00 0.00 40.42 3.41
3199 3359 6.018994 GTCCAAATACGGATGTATCAAGTCAC 60.019 42.308 0.00 0.00 40.42 3.67
3200 3360 5.051039 CCAAATACGGATGTATCAAGTCACG 60.051 44.000 0.00 0.00 40.42 4.35
3201 3361 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
3202 3362 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
3203 3363 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
3204 3364 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
3205 3365 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
3206 3366 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
3207 3367 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
3208 3368 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
3209 3369 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
3210 3370 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
3213 3373 9.577110 TGTATCAAGTCACGTTTTAGTATTAGG 57.423 33.333 0.00 0.00 0.00 2.69
3214 3374 9.578439 GTATCAAGTCACGTTTTAGTATTAGGT 57.422 33.333 0.00 0.00 0.00 3.08
3216 3376 8.970691 TCAAGTCACGTTTTAGTATTAGGTAC 57.029 34.615 0.00 0.00 0.00 3.34
3217 3377 8.575589 TCAAGTCACGTTTTAGTATTAGGTACA 58.424 33.333 0.00 0.00 35.67 2.90
3218 3378 9.362539 CAAGTCACGTTTTAGTATTAGGTACAT 57.637 33.333 0.00 0.00 35.67 2.29
3219 3379 9.578439 AAGTCACGTTTTAGTATTAGGTACATC 57.422 33.333 0.00 0.00 35.67 3.06
3220 3380 8.193438 AGTCACGTTTTAGTATTAGGTACATCC 58.807 37.037 0.00 0.00 35.67 3.51
3221 3381 7.166473 GTCACGTTTTAGTATTAGGTACATCCG 59.834 40.741 0.00 0.00 41.99 4.18
3222 3382 6.974622 CACGTTTTAGTATTAGGTACATCCGT 59.025 38.462 0.00 0.00 41.99 4.69
3223 3383 8.128582 CACGTTTTAGTATTAGGTACATCCGTA 58.871 37.037 0.00 0.00 41.99 4.02
3224 3384 8.850156 ACGTTTTAGTATTAGGTACATCCGTAT 58.150 33.333 0.00 0.00 41.99 3.06
3225 3385 9.334693 CGTTTTAGTATTAGGTACATCCGTATC 57.665 37.037 0.00 0.00 41.99 2.24
3231 3391 8.600668 AGTATTAGGTACATCCGTATCTAGACA 58.399 37.037 0.00 0.00 41.33 3.41
3232 3392 9.224267 GTATTAGGTACATCCGTATCTAGACAA 57.776 37.037 0.00 0.00 41.33 3.18
3233 3393 8.701908 ATTAGGTACATCCGTATCTAGACAAA 57.298 34.615 0.00 0.00 41.33 2.83
3234 3394 8.701908 TTAGGTACATCCGTATCTAGACAAAT 57.298 34.615 0.00 0.00 41.33 2.32
3235 3395 7.216973 AGGTACATCCGTATCTAGACAAATC 57.783 40.000 0.00 0.00 37.29 2.17
3236 3396 7.005296 AGGTACATCCGTATCTAGACAAATCT 58.995 38.462 0.00 0.00 37.29 2.40
3237 3397 8.162085 AGGTACATCCGTATCTAGACAAATCTA 58.838 37.037 0.00 0.00 37.29 1.98
3238 3398 8.790718 GGTACATCCGTATCTAGACAAATCTAA 58.209 37.037 0.00 0.00 36.98 2.10
3239 3399 9.828852 GTACATCCGTATCTAGACAAATCTAAG 57.171 37.037 0.00 0.00 36.98 2.18
3240 3400 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
3241 3401 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
3242 3402 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3243 3403 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3244 3404 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3245 3405 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
3256 3416 9.322776 CAAATCTAAGACAAGAATTTTGAGACG 57.677 33.333 7.18 0.00 31.51 4.18
3257 3417 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
3258 3418 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
3259 3419 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
3260 3420 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
3261 3421 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
3262 3422 3.072476 ACAAGAATTTTGAGACGGAGGGA 59.928 43.478 7.18 0.00 0.00 4.20
3340 3500 4.093408 GCGCTGATGTTTCATTTCTCAGTA 59.907 41.667 0.00 0.00 36.55 2.74
3341 3501 5.390885 GCGCTGATGTTTCATTTCTCAGTAA 60.391 40.000 0.00 0.00 36.55 2.24
3405 3565 7.427030 GCTGTTGCGTAAATGATAAAATTCGTA 59.573 33.333 0.00 0.00 0.00 3.43
3422 3582 3.127589 TCGTATGGATTATTGGTGTGCG 58.872 45.455 0.00 0.00 0.00 5.34
3425 3585 1.364721 TGGATTATTGGTGTGCGTCG 58.635 50.000 0.00 0.00 0.00 5.12
3504 3665 6.902341 TGTATTCTCAATTGTTTGCTGACTC 58.098 36.000 5.13 0.00 32.61 3.36
3514 3675 2.015456 TTGCTGACTCCTTCTCCTCA 57.985 50.000 0.00 0.00 0.00 3.86
3560 3721 6.501781 CATAAATTGCTTCTCCAATCTCCAC 58.498 40.000 0.00 0.00 34.50 4.02
3593 3754 5.537674 AGGAGGCTATTTTCAGCATTATTGG 59.462 40.000 0.00 0.00 43.67 3.16
3653 3815 2.078849 TGCACAAGGATACACACTCG 57.921 50.000 0.00 0.00 41.41 4.18
3677 3839 9.516546 TCGAGACATTAAGATCCTTATAAGCTA 57.483 33.333 6.99 0.00 0.00 3.32
3702 3870 8.507524 AAGAAATGTACTTATGCTCCTTAACC 57.492 34.615 0.00 0.00 0.00 2.85
3808 3976 4.559153 CCAAATCGAATGCCTTGAACTTT 58.441 39.130 0.00 0.00 0.00 2.66
3835 4003 1.075374 TCATACTGCAGGGCCTGTTTT 59.925 47.619 32.80 19.48 33.43 2.43
3841 4009 1.177401 GCAGGGCCTGTTTTAAGAGG 58.823 55.000 32.80 5.59 42.11 3.69
3845 4014 2.990998 AGGGCCTGTTTTAAGAGGGTAA 59.009 45.455 4.50 0.00 39.72 2.85
3849 4018 6.068438 AGGGCCTGTTTTAAGAGGGTAAATAT 60.068 38.462 4.50 0.00 39.72 1.28
3886 4058 3.649073 TCAAGTGTGTCCACAGAATACG 58.351 45.455 0.00 0.00 44.39 3.06
3903 4075 5.356751 AGAATACGGTTGCAGCAATTATCAA 59.643 36.000 11.96 0.00 0.00 2.57
3949 4126 1.544314 GCCACATCAGCCCTAGGAATC 60.544 57.143 11.48 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 5.011125 TGGGGATCGTTGCAGAAATTAAAAA 59.989 36.000 0.00 0.00 0.00 1.94
13 14 4.524714 TGGGGATCGTTGCAGAAATTAAAA 59.475 37.500 0.00 0.00 0.00 1.52
14 15 4.082845 TGGGGATCGTTGCAGAAATTAAA 58.917 39.130 0.00 0.00 0.00 1.52
15 16 3.691575 TGGGGATCGTTGCAGAAATTAA 58.308 40.909 0.00 0.00 0.00 1.40
16 17 3.358111 TGGGGATCGTTGCAGAAATTA 57.642 42.857 0.00 0.00 0.00 1.40
17 18 2.214376 TGGGGATCGTTGCAGAAATT 57.786 45.000 0.00 0.00 0.00 1.82
18 19 1.818674 GTTGGGGATCGTTGCAGAAAT 59.181 47.619 0.00 0.00 0.00 2.17
19 20 1.243902 GTTGGGGATCGTTGCAGAAA 58.756 50.000 0.00 0.00 0.00 2.52
20 21 0.109532 TGTTGGGGATCGTTGCAGAA 59.890 50.000 0.00 0.00 0.00 3.02
21 22 0.109532 TTGTTGGGGATCGTTGCAGA 59.890 50.000 0.00 0.00 0.00 4.26
22 23 0.958091 TTTGTTGGGGATCGTTGCAG 59.042 50.000 0.00 0.00 0.00 4.41
23 24 1.403814 TTTTGTTGGGGATCGTTGCA 58.596 45.000 0.00 0.00 0.00 4.08
24 25 2.035321 TCTTTTTGTTGGGGATCGTTGC 59.965 45.455 0.00 0.00 0.00 4.17
25 26 3.552068 GGTCTTTTTGTTGGGGATCGTTG 60.552 47.826 0.00 0.00 0.00 4.10
26 27 2.626266 GGTCTTTTTGTTGGGGATCGTT 59.374 45.455 0.00 0.00 0.00 3.85
27 28 2.235891 GGTCTTTTTGTTGGGGATCGT 58.764 47.619 0.00 0.00 0.00 3.73
28 29 2.235016 TGGTCTTTTTGTTGGGGATCG 58.765 47.619 0.00 0.00 0.00 3.69
29 30 4.283212 TGAATGGTCTTTTTGTTGGGGATC 59.717 41.667 0.00 0.00 0.00 3.36
30 31 4.230455 TGAATGGTCTTTTTGTTGGGGAT 58.770 39.130 0.00 0.00 0.00 3.85
31 32 3.640967 CTGAATGGTCTTTTTGTTGGGGA 59.359 43.478 0.00 0.00 0.00 4.81
32 33 3.640967 TCTGAATGGTCTTTTTGTTGGGG 59.359 43.478 0.00 0.00 0.00 4.96
33 34 4.935352 TCTGAATGGTCTTTTTGTTGGG 57.065 40.909 0.00 0.00 0.00 4.12
34 35 5.928264 GGATTCTGAATGGTCTTTTTGTTGG 59.072 40.000 7.78 0.00 0.00 3.77
35 36 6.643770 CAGGATTCTGAATGGTCTTTTTGTTG 59.356 38.462 7.78 0.00 43.49 3.33
36 37 6.239402 CCAGGATTCTGAATGGTCTTTTTGTT 60.239 38.462 7.78 0.00 43.49 2.83
37 38 5.244626 CCAGGATTCTGAATGGTCTTTTTGT 59.755 40.000 7.78 0.00 43.49 2.83
38 39 5.244626 ACCAGGATTCTGAATGGTCTTTTTG 59.755 40.000 7.78 0.00 42.35 2.44
39 40 5.244626 CACCAGGATTCTGAATGGTCTTTTT 59.755 40.000 7.78 0.00 44.16 1.94
40 41 4.768968 CACCAGGATTCTGAATGGTCTTTT 59.231 41.667 7.78 0.00 44.16 2.27
41 42 4.338879 CACCAGGATTCTGAATGGTCTTT 58.661 43.478 7.78 0.00 44.16 2.52
42 43 3.875369 GCACCAGGATTCTGAATGGTCTT 60.875 47.826 7.78 0.00 44.16 3.01
43 44 2.356535 GCACCAGGATTCTGAATGGTCT 60.357 50.000 7.78 0.13 44.16 3.85
44 45 2.019984 GCACCAGGATTCTGAATGGTC 58.980 52.381 7.78 2.36 44.16 4.02
45 46 1.637553 AGCACCAGGATTCTGAATGGT 59.362 47.619 7.78 7.95 46.91 3.55
46 47 2.295885 GAGCACCAGGATTCTGAATGG 58.704 52.381 7.78 7.28 43.49 3.16
47 48 1.938577 CGAGCACCAGGATTCTGAATG 59.061 52.381 7.78 1.54 43.49 2.67
48 49 1.745141 GCGAGCACCAGGATTCTGAAT 60.745 52.381 1.24 1.81 43.49 2.57
49 50 0.391661 GCGAGCACCAGGATTCTGAA 60.392 55.000 1.24 0.00 43.49 3.02
50 51 1.219124 GCGAGCACCAGGATTCTGA 59.781 57.895 1.24 0.00 43.49 3.27
51 52 2.169789 CGCGAGCACCAGGATTCTG 61.170 63.158 0.00 0.00 40.59 3.02
52 53 2.172483 AACGCGAGCACCAGGATTCT 62.172 55.000 15.93 0.00 0.00 2.40
53 54 1.298859 AAACGCGAGCACCAGGATTC 61.299 55.000 15.93 0.00 0.00 2.52
54 55 0.036765 TAAACGCGAGCACCAGGATT 60.037 50.000 15.93 0.00 0.00 3.01
55 56 0.178068 ATAAACGCGAGCACCAGGAT 59.822 50.000 15.93 0.00 0.00 3.24
56 57 0.036765 AATAAACGCGAGCACCAGGA 60.037 50.000 15.93 0.00 0.00 3.86
57 58 0.096976 CAATAAACGCGAGCACCAGG 59.903 55.000 15.93 0.00 0.00 4.45
58 59 0.521242 GCAATAAACGCGAGCACCAG 60.521 55.000 15.93 0.00 0.00 4.00
59 60 0.953471 AGCAATAAACGCGAGCACCA 60.953 50.000 15.93 0.00 0.00 4.17
60 61 0.521242 CAGCAATAAACGCGAGCACC 60.521 55.000 15.93 0.00 0.00 5.01
61 62 0.521242 CCAGCAATAAACGCGAGCAC 60.521 55.000 15.93 0.00 0.00 4.40
62 63 0.672091 TCCAGCAATAAACGCGAGCA 60.672 50.000 15.93 0.00 0.00 4.26
63 64 0.657840 ATCCAGCAATAAACGCGAGC 59.342 50.000 15.93 6.71 0.00 5.03
64 65 3.405170 AAATCCAGCAATAAACGCGAG 57.595 42.857 15.93 0.00 0.00 5.03
65 66 5.493133 AATAAATCCAGCAATAAACGCGA 57.507 34.783 15.93 0.00 0.00 5.87
66 67 5.741510 TGAAATAAATCCAGCAATAAACGCG 59.258 36.000 3.53 3.53 0.00 6.01
67 68 6.198966 CCTGAAATAAATCCAGCAATAAACGC 59.801 38.462 0.00 0.00 0.00 4.84
68 69 7.479980 TCCTGAAATAAATCCAGCAATAAACG 58.520 34.615 0.00 0.00 0.00 3.60
69 70 9.822185 AATCCTGAAATAAATCCAGCAATAAAC 57.178 29.630 0.00 0.00 0.00 2.01
74 75 9.874205 CTAAAAATCCTGAAATAAATCCAGCAA 57.126 29.630 0.00 0.00 0.00 3.91
75 76 7.981225 GCTAAAAATCCTGAAATAAATCCAGCA 59.019 33.333 0.00 0.00 0.00 4.41
76 77 7.168135 CGCTAAAAATCCTGAAATAAATCCAGC 59.832 37.037 0.00 0.00 0.00 4.85
77 78 8.405531 TCGCTAAAAATCCTGAAATAAATCCAG 58.594 33.333 0.00 0.00 0.00 3.86
78 79 8.287439 TCGCTAAAAATCCTGAAATAAATCCA 57.713 30.769 0.00 0.00 0.00 3.41
79 80 9.185192 CATCGCTAAAAATCCTGAAATAAATCC 57.815 33.333 0.00 0.00 0.00 3.01
80 81 8.694394 GCATCGCTAAAAATCCTGAAATAAATC 58.306 33.333 0.00 0.00 0.00 2.17
81 82 8.196771 TGCATCGCTAAAAATCCTGAAATAAAT 58.803 29.630 0.00 0.00 0.00 1.40
82 83 7.487829 GTGCATCGCTAAAAATCCTGAAATAAA 59.512 33.333 0.00 0.00 0.00 1.40
83 84 6.972328 GTGCATCGCTAAAAATCCTGAAATAA 59.028 34.615 0.00 0.00 0.00 1.40
84 85 6.094742 TGTGCATCGCTAAAAATCCTGAAATA 59.905 34.615 0.00 0.00 0.00 1.40
85 86 5.105797 TGTGCATCGCTAAAAATCCTGAAAT 60.106 36.000 0.00 0.00 0.00 2.17
86 87 4.217334 TGTGCATCGCTAAAAATCCTGAAA 59.783 37.500 0.00 0.00 0.00 2.69
87 88 3.755905 TGTGCATCGCTAAAAATCCTGAA 59.244 39.130 0.00 0.00 0.00 3.02
88 89 3.342719 TGTGCATCGCTAAAAATCCTGA 58.657 40.909 0.00 0.00 0.00 3.86
89 90 3.763097 TGTGCATCGCTAAAAATCCTG 57.237 42.857 0.00 0.00 0.00 3.86
90 91 4.989279 AATGTGCATCGCTAAAAATCCT 57.011 36.364 0.00 0.00 0.00 3.24
91 92 7.306749 CCATTAAATGTGCATCGCTAAAAATCC 60.307 37.037 0.00 0.00 0.00 3.01
92 93 7.306749 CCCATTAAATGTGCATCGCTAAAAATC 60.307 37.037 0.00 0.00 0.00 2.17
93 94 6.479660 CCCATTAAATGTGCATCGCTAAAAAT 59.520 34.615 0.00 0.00 0.00 1.82
94 95 5.809562 CCCATTAAATGTGCATCGCTAAAAA 59.190 36.000 0.00 0.00 0.00 1.94
95 96 5.126222 TCCCATTAAATGTGCATCGCTAAAA 59.874 36.000 0.00 0.00 0.00 1.52
96 97 4.642437 TCCCATTAAATGTGCATCGCTAAA 59.358 37.500 0.00 0.00 0.00 1.85
97 98 4.203226 TCCCATTAAATGTGCATCGCTAA 58.797 39.130 0.00 0.00 0.00 3.09
98 99 3.814625 TCCCATTAAATGTGCATCGCTA 58.185 40.909 0.00 0.00 0.00 4.26
99 100 2.620115 CTCCCATTAAATGTGCATCGCT 59.380 45.455 0.00 0.00 0.00 4.93
100 101 2.287788 CCTCCCATTAAATGTGCATCGC 60.288 50.000 0.00 0.00 0.00 4.58
101 102 3.213506 TCCTCCCATTAAATGTGCATCG 58.786 45.455 0.00 0.00 0.00 3.84
102 103 4.276926 GTCTCCTCCCATTAAATGTGCATC 59.723 45.833 0.00 0.00 0.00 3.91
103 104 4.210331 GTCTCCTCCCATTAAATGTGCAT 58.790 43.478 0.00 0.00 0.00 3.96
104 105 3.620488 GTCTCCTCCCATTAAATGTGCA 58.380 45.455 0.00 0.00 0.00 4.57
105 106 2.614057 CGTCTCCTCCCATTAAATGTGC 59.386 50.000 0.00 0.00 0.00 4.57
106 107 3.873910 ACGTCTCCTCCCATTAAATGTG 58.126 45.455 0.00 0.00 0.00 3.21
107 108 4.569719 AACGTCTCCTCCCATTAAATGT 57.430 40.909 0.00 0.00 0.00 2.71
108 109 5.186198 AGAAACGTCTCCTCCCATTAAATG 58.814 41.667 0.00 0.00 0.00 2.32
109 110 5.437191 AGAAACGTCTCCTCCCATTAAAT 57.563 39.130 0.00 0.00 0.00 1.40
110 111 4.903045 AGAAACGTCTCCTCCCATTAAA 57.097 40.909 0.00 0.00 0.00 1.52
111 112 5.221185 CGATAGAAACGTCTCCTCCCATTAA 60.221 44.000 0.00 0.00 35.12 1.40
112 113 4.277672 CGATAGAAACGTCTCCTCCCATTA 59.722 45.833 0.00 0.00 35.12 1.90
113 114 3.068307 CGATAGAAACGTCTCCTCCCATT 59.932 47.826 0.00 0.00 35.12 3.16
114 115 2.623889 CGATAGAAACGTCTCCTCCCAT 59.376 50.000 0.00 0.00 35.12 4.00
115 116 2.022195 CGATAGAAACGTCTCCTCCCA 58.978 52.381 0.00 0.00 35.12 4.37
116 117 2.295885 TCGATAGAAACGTCTCCTCCC 58.704 52.381 0.00 0.00 46.15 4.30
129 130 1.434622 GCCACCTCGTCGTCGATAGA 61.435 60.000 5.00 0.53 45.21 1.98
130 131 1.009900 GCCACCTCGTCGTCGATAG 60.010 63.158 5.00 3.11 45.21 2.08
131 132 0.179076 TAGCCACCTCGTCGTCGATA 60.179 55.000 5.00 0.00 45.21 2.92
132 133 1.450848 TAGCCACCTCGTCGTCGAT 60.451 57.895 5.00 0.00 45.21 3.59
133 134 2.046988 TAGCCACCTCGTCGTCGA 60.047 61.111 4.42 4.42 44.12 4.20
134 135 2.099831 GTAGCCACCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
135 136 2.488820 GGTAGCCACCTCGTCGTC 59.511 66.667 0.00 0.00 42.11 4.20
136 137 3.437795 CGGTAGCCACCTCGTCGT 61.438 66.667 0.00 0.00 43.33 4.34
137 138 3.437795 ACGGTAGCCACCTCGTCG 61.438 66.667 0.00 0.00 43.33 5.12
138 139 2.181021 CACGGTAGCCACCTCGTC 59.819 66.667 0.00 0.00 43.33 4.20
139 140 2.282674 TCACGGTAGCCACCTCGT 60.283 61.111 0.00 0.00 43.33 4.18
140 141 1.874345 AAGTCACGGTAGCCACCTCG 61.874 60.000 0.00 0.00 43.33 4.63
141 142 0.108756 GAAGTCACGGTAGCCACCTC 60.109 60.000 0.00 0.00 43.33 3.85
142 143 0.830444 TGAAGTCACGGTAGCCACCT 60.830 55.000 0.00 0.00 43.33 4.00
143 144 0.249398 ATGAAGTCACGGTAGCCACC 59.751 55.000 0.00 0.00 41.93 4.61
144 145 2.953466 TATGAAGTCACGGTAGCCAC 57.047 50.000 0.00 0.00 0.00 5.01
145 146 3.965379 TTTATGAAGTCACGGTAGCCA 57.035 42.857 0.00 0.00 0.00 4.75
146 147 5.353123 TGAAATTTATGAAGTCACGGTAGCC 59.647 40.000 0.00 0.00 0.00 3.93
147 148 6.417191 TGAAATTTATGAAGTCACGGTAGC 57.583 37.500 0.00 0.00 0.00 3.58
148 149 8.251750 TCTTGAAATTTATGAAGTCACGGTAG 57.748 34.615 0.00 0.00 0.00 3.18
149 150 8.664798 CATCTTGAAATTTATGAAGTCACGGTA 58.335 33.333 0.00 0.00 0.00 4.02
150 151 7.390440 TCATCTTGAAATTTATGAAGTCACGGT 59.610 33.333 0.00 0.00 0.00 4.83
151 152 7.751732 TCATCTTGAAATTTATGAAGTCACGG 58.248 34.615 0.00 0.00 0.00 4.94
159 160 9.573166 ACCGGAATATCATCTTGAAATTTATGA 57.427 29.630 9.46 4.30 33.20 2.15
162 163 9.402320 TGAACCGGAATATCATCTTGAAATTTA 57.598 29.630 9.46 0.00 0.00 1.40
163 164 8.292444 TGAACCGGAATATCATCTTGAAATTT 57.708 30.769 9.46 0.00 0.00 1.82
164 165 7.557719 ACTGAACCGGAATATCATCTTGAAATT 59.442 33.333 9.46 0.00 0.00 1.82
165 166 7.056635 ACTGAACCGGAATATCATCTTGAAAT 58.943 34.615 9.46 0.00 0.00 2.17
166 167 6.414732 ACTGAACCGGAATATCATCTTGAAA 58.585 36.000 9.46 0.00 0.00 2.69
167 168 5.989477 ACTGAACCGGAATATCATCTTGAA 58.011 37.500 9.46 0.00 0.00 2.69
168 169 5.363868 AGACTGAACCGGAATATCATCTTGA 59.636 40.000 9.46 0.00 0.00 3.02
169 170 5.605534 AGACTGAACCGGAATATCATCTTG 58.394 41.667 9.46 0.00 0.00 3.02
170 171 5.878406 AGACTGAACCGGAATATCATCTT 57.122 39.130 9.46 0.00 0.00 2.40
171 172 5.878406 AAGACTGAACCGGAATATCATCT 57.122 39.130 9.46 8.87 0.00 2.90
172 173 5.175856 CGAAAGACTGAACCGGAATATCATC 59.824 44.000 9.46 6.96 0.00 2.92
173 174 5.050490 CGAAAGACTGAACCGGAATATCAT 58.950 41.667 9.46 0.00 0.00 2.45
174 175 4.158949 TCGAAAGACTGAACCGGAATATCA 59.841 41.667 9.46 6.13 33.31 2.15
175 176 4.679662 TCGAAAGACTGAACCGGAATATC 58.320 43.478 9.46 0.91 33.31 1.63
176 177 4.730949 TCGAAAGACTGAACCGGAATAT 57.269 40.909 9.46 0.00 33.31 1.28
177 178 4.491676 CTTCGAAAGACTGAACCGGAATA 58.508 43.478 9.46 0.00 41.84 1.75
178 179 3.326747 CTTCGAAAGACTGAACCGGAAT 58.673 45.455 9.46 0.00 41.84 3.01
179 180 2.547218 CCTTCGAAAGACTGAACCGGAA 60.547 50.000 9.46 0.00 41.84 4.30
180 181 1.000506 CCTTCGAAAGACTGAACCGGA 59.999 52.381 9.46 0.00 41.84 5.14
181 182 1.270147 ACCTTCGAAAGACTGAACCGG 60.270 52.381 0.00 0.00 41.84 5.28
182 183 1.792949 CACCTTCGAAAGACTGAACCG 59.207 52.381 0.00 0.00 41.84 4.44
183 184 1.531578 GCACCTTCGAAAGACTGAACC 59.468 52.381 0.00 0.00 41.84 3.62
184 185 2.476997 GAGCACCTTCGAAAGACTGAAC 59.523 50.000 0.00 0.00 41.84 3.18
185 186 2.102420 TGAGCACCTTCGAAAGACTGAA 59.898 45.455 0.00 0.00 41.84 3.02
186 187 1.686587 TGAGCACCTTCGAAAGACTGA 59.313 47.619 0.00 0.00 41.84 3.41
187 188 2.154854 TGAGCACCTTCGAAAGACTG 57.845 50.000 0.00 0.00 41.84 3.51
188 189 4.499183 CTTATGAGCACCTTCGAAAGACT 58.501 43.478 0.00 0.00 41.84 3.24
189 190 3.619038 CCTTATGAGCACCTTCGAAAGAC 59.381 47.826 0.00 0.00 41.84 3.01
190 191 3.513912 TCCTTATGAGCACCTTCGAAAGA 59.486 43.478 0.00 0.00 39.20 2.52
191 192 3.861840 TCCTTATGAGCACCTTCGAAAG 58.138 45.455 0.00 0.00 0.00 2.62
192 193 3.973206 TCCTTATGAGCACCTTCGAAA 57.027 42.857 0.00 0.00 0.00 3.46
193 194 5.304357 TCATATCCTTATGAGCACCTTCGAA 59.696 40.000 0.00 0.00 39.40 3.71
194 195 4.832823 TCATATCCTTATGAGCACCTTCGA 59.167 41.667 0.00 0.00 39.40 3.71
195 196 5.139435 TCATATCCTTATGAGCACCTTCG 57.861 43.478 0.00 0.00 39.40 3.79
208 209 8.918202 TGGAAAATATAAACGCTCATATCCTT 57.082 30.769 0.00 0.00 0.00 3.36
209 210 8.950210 CATGGAAAATATAAACGCTCATATCCT 58.050 33.333 0.00 0.00 0.00 3.24
210 211 8.946085 TCATGGAAAATATAAACGCTCATATCC 58.054 33.333 0.00 0.00 0.00 2.59
211 212 9.760660 GTCATGGAAAATATAAACGCTCATATC 57.239 33.333 0.00 0.00 0.00 1.63
212 213 9.507329 AGTCATGGAAAATATAAACGCTCATAT 57.493 29.630 0.00 0.00 0.00 1.78
213 214 8.902540 AGTCATGGAAAATATAAACGCTCATA 57.097 30.769 0.00 0.00 0.00 2.15
214 215 7.307396 CGAGTCATGGAAAATATAAACGCTCAT 60.307 37.037 0.00 0.00 0.00 2.90
215 216 6.019075 CGAGTCATGGAAAATATAAACGCTCA 60.019 38.462 0.00 0.00 0.00 4.26
216 217 6.200286 TCGAGTCATGGAAAATATAAACGCTC 59.800 38.462 0.00 0.00 0.00 5.03
217 218 6.046593 TCGAGTCATGGAAAATATAAACGCT 58.953 36.000 0.00 0.00 0.00 5.07
218 219 6.281848 TCGAGTCATGGAAAATATAAACGC 57.718 37.500 0.00 0.00 0.00 4.84
219 220 7.123830 GGTTCGAGTCATGGAAAATATAAACG 58.876 38.462 0.00 0.00 0.00 3.60
220 221 7.415229 GGGTTCGAGTCATGGAAAATATAAAC 58.585 38.462 0.00 0.00 0.00 2.01
221 222 6.259167 CGGGTTCGAGTCATGGAAAATATAAA 59.741 38.462 0.00 0.00 39.00 1.40
222 223 5.756347 CGGGTTCGAGTCATGGAAAATATAA 59.244 40.000 0.00 0.00 39.00 0.98
223 224 5.294356 CGGGTTCGAGTCATGGAAAATATA 58.706 41.667 0.00 0.00 39.00 0.86
224 225 4.127171 CGGGTTCGAGTCATGGAAAATAT 58.873 43.478 0.00 0.00 39.00 1.28
225 226 3.527533 CGGGTTCGAGTCATGGAAAATA 58.472 45.455 0.00 0.00 39.00 1.40
226 227 2.356135 CGGGTTCGAGTCATGGAAAAT 58.644 47.619 0.00 0.00 39.00 1.82
227 228 1.609580 CCGGGTTCGAGTCATGGAAAA 60.610 52.381 0.00 0.00 39.00 2.29
228 229 0.036765 CCGGGTTCGAGTCATGGAAA 60.037 55.000 0.00 0.00 39.00 3.13
229 230 0.901114 TCCGGGTTCGAGTCATGGAA 60.901 55.000 0.00 0.00 39.00 3.53
230 231 0.686441 ATCCGGGTTCGAGTCATGGA 60.686 55.000 0.00 0.00 39.00 3.41
231 232 0.530650 CATCCGGGTTCGAGTCATGG 60.531 60.000 0.00 0.00 39.00 3.66
232 233 0.530650 CCATCCGGGTTCGAGTCATG 60.531 60.000 0.00 0.00 39.00 3.07
233 234 0.686441 TCCATCCGGGTTCGAGTCAT 60.686 55.000 0.00 0.00 39.00 3.06
234 235 1.304630 TCCATCCGGGTTCGAGTCA 60.305 57.895 0.00 0.00 39.00 3.41
235 236 1.141234 GTCCATCCGGGTTCGAGTC 59.859 63.158 0.00 0.00 39.00 3.36
236 237 2.356780 GGTCCATCCGGGTTCGAGT 61.357 63.158 0.00 0.00 39.00 4.18
237 238 1.895020 TTGGTCCATCCGGGTTCGAG 61.895 60.000 0.00 0.00 39.52 4.04
238 239 1.481901 TTTGGTCCATCCGGGTTCGA 61.482 55.000 0.00 0.00 39.52 3.71
239 240 0.606944 TTTTGGTCCATCCGGGTTCG 60.607 55.000 0.00 0.00 39.52 3.95
240 241 1.623163 TTTTTGGTCCATCCGGGTTC 58.377 50.000 0.00 0.00 39.52 3.62
241 242 1.899142 CATTTTTGGTCCATCCGGGTT 59.101 47.619 0.00 0.00 39.52 4.11
242 243 1.076350 TCATTTTTGGTCCATCCGGGT 59.924 47.619 0.00 0.00 39.52 5.28
243 244 1.750778 CTCATTTTTGGTCCATCCGGG 59.249 52.381 0.00 0.00 39.52 5.73
244 245 1.134946 GCTCATTTTTGGTCCATCCGG 59.865 52.381 0.00 0.00 39.52 5.14
245 246 1.134946 GGCTCATTTTTGGTCCATCCG 59.865 52.381 0.00 0.00 39.52 4.18
246 247 2.178580 TGGCTCATTTTTGGTCCATCC 58.821 47.619 0.00 0.00 0.00 3.51
247 248 3.181472 GGATGGCTCATTTTTGGTCCATC 60.181 47.826 9.82 9.82 45.52 3.51
248 249 2.767960 GGATGGCTCATTTTTGGTCCAT 59.232 45.455 0.00 0.00 37.05 3.41
249 250 2.178580 GGATGGCTCATTTTTGGTCCA 58.821 47.619 0.00 0.00 0.00 4.02
250 251 2.178580 TGGATGGCTCATTTTTGGTCC 58.821 47.619 0.00 0.00 0.00 4.46
251 252 3.181472 GGATGGATGGCTCATTTTTGGTC 60.181 47.826 0.00 0.00 0.00 4.02
359 381 2.408241 GGTCGTCTCGGAGGAGGTG 61.408 68.421 4.96 0.00 40.85 4.00
360 382 2.045143 GGTCGTCTCGGAGGAGGT 60.045 66.667 4.96 0.00 40.85 3.85
384 425 3.512516 GGATTGCGCCACCTGCTC 61.513 66.667 4.18 0.00 38.05 4.26
412 460 0.045162 AATTACGGAGGGAAGGGGGA 59.955 55.000 0.00 0.00 0.00 4.81
428 481 2.047002 ACCGGCGGCAGTAATAAATT 57.953 45.000 28.71 0.00 0.00 1.82
429 482 2.914695 TACCGGCGGCAGTAATAAAT 57.085 45.000 28.71 4.47 0.00 1.40
437 500 0.946221 GATCAGATTACCGGCGGCAG 60.946 60.000 28.71 6.59 0.00 4.85
439 502 0.946221 CTGATCAGATTACCGGCGGC 60.946 60.000 28.71 9.88 0.00 6.53
441 504 2.732412 ATCTGATCAGATTACCGGCG 57.268 50.000 28.92 0.00 45.31 6.46
465 528 1.084370 GTGGAGCGGGAGTGATTTCG 61.084 60.000 0.00 0.00 0.00 3.46
468 531 1.568504 TTAGTGGAGCGGGAGTGATT 58.431 50.000 0.00 0.00 0.00 2.57
471 534 0.320374 TGTTTAGTGGAGCGGGAGTG 59.680 55.000 0.00 0.00 0.00 3.51
472 535 1.053424 TTGTTTAGTGGAGCGGGAGT 58.947 50.000 0.00 0.00 0.00 3.85
616 690 2.438434 GGTGATTGGTGGGGAGCG 60.438 66.667 0.00 0.00 0.00 5.03
641 715 1.074850 GAGGGAGGGAGGAGGAAGG 60.075 68.421 0.00 0.00 0.00 3.46
657 731 2.043450 AGGCTCGGGAGTCTGGAG 60.043 66.667 1.29 6.62 42.67 3.86
658 732 2.043852 GAGGCTCGGGAGTCTGGA 60.044 66.667 7.67 0.00 44.60 3.86
668 742 1.321074 ACTAGAAACCCCGAGGCTCG 61.321 60.000 29.16 29.16 40.07 5.03
702 776 2.901042 GGGAGTACCTTGCGGGAG 59.099 66.667 2.42 0.00 38.76 4.30
714 788 1.450025 GGAAAAGAAATCGCGGGAGT 58.550 50.000 6.13 1.49 0.00 3.85
759 833 3.524606 GGCCAGTAGCGAGCGGTA 61.525 66.667 0.00 0.00 45.17 4.02
766 840 4.880537 CCGAGCAGGCCAGTAGCG 62.881 72.222 5.01 2.30 45.17 4.26
778 852 2.035442 GGTTCTTGCAGGACCGAGC 61.035 63.158 0.00 5.15 0.00 5.03
860 944 4.041049 CAGAGGAAGACGAAGATCGATTG 58.959 47.826 6.78 0.00 43.74 2.67
865 949 1.402259 TCGCAGAGGAAGACGAAGATC 59.598 52.381 0.00 0.00 0.00 2.75
970 1086 0.252742 TCCACCTCCTTCCTCCCTTC 60.253 60.000 0.00 0.00 0.00 3.46
973 1089 1.403687 CGATCCACCTCCTTCCTCCC 61.404 65.000 0.00 0.00 0.00 4.30
974 1090 0.688087 ACGATCCACCTCCTTCCTCC 60.688 60.000 0.00 0.00 0.00 4.30
975 1091 0.461961 CACGATCCACCTCCTTCCTC 59.538 60.000 0.00 0.00 0.00 3.71
976 1092 0.978146 CCACGATCCACCTCCTTCCT 60.978 60.000 0.00 0.00 0.00 3.36
1099 1215 2.749682 CTGCTGCTGGTGGTGGTA 59.250 61.111 0.00 0.00 0.00 3.25
1239 1355 4.016706 CCCAGGTCGGTGGTGGTC 62.017 72.222 0.00 0.00 35.60 4.02
1320 1436 0.672711 AGGACTCGTCGTCGTCATCA 60.673 55.000 15.50 0.00 43.79 3.07
1536 1667 3.706373 ACGGAATCGCAGGGCACT 61.706 61.111 0.00 0.00 40.63 4.40
1749 1880 0.867753 CGTACACGCTGCTGATCTCC 60.868 60.000 0.00 0.00 0.00 3.71
1794 1925 2.041115 GGTCTTCCCCTTCTTGCGC 61.041 63.158 0.00 0.00 0.00 6.09
1806 1937 2.047179 GTGGGCACTCCGGTCTTC 60.047 66.667 0.00 0.00 38.76 2.87
1845 1976 1.269166 GTATGAGCAACGTCGTCAGG 58.731 55.000 0.00 0.00 0.00 3.86
1854 1985 0.804989 GGGCACAGTGTATGAGCAAC 59.195 55.000 1.61 0.00 46.22 4.17
2094 2225 2.484062 CCTGATGAACGGGCATGCC 61.484 63.158 29.47 29.47 38.29 4.40
2310 2441 1.136984 CGTCGCCTCTAAACGCTCT 59.863 57.895 0.00 0.00 0.00 4.09
2367 2498 2.354773 GCGCGATACTCGAAGGGG 60.355 66.667 12.10 0.00 43.74 4.79
2430 2561 7.623630 TGACAATAAGAAGATCATCCTTGTCA 58.376 34.615 23.38 23.38 45.13 3.58
2502 2633 2.802106 GTCTTCCTCGGGCTCTCG 59.198 66.667 0.00 0.00 0.00 4.04
2520 2651 2.743636 TCCTGATCGTGTTCAAGACC 57.256 50.000 0.00 0.00 0.00 3.85
2675 2806 3.200593 GCTGCCTGTGCTCATCCG 61.201 66.667 0.00 0.00 38.71 4.18
2715 2846 2.027625 CACGTTGAGAACCTCCCGC 61.028 63.158 0.00 0.00 30.60 6.13
2722 2853 1.300697 AGGCGACCACGTTGAGAAC 60.301 57.895 0.00 0.00 41.98 3.01
2850 2981 5.008118 GCTCTTGATTACCTTGTATCTTGCC 59.992 44.000 0.00 0.00 0.00 4.52
2985 3116 5.356751 GTGATGAAATGTACCAGGCAACATA 59.643 40.000 8.18 0.00 35.30 2.29
3018 3172 8.697960 CATCAGAATATCAGATACAACAGAACG 58.302 37.037 0.00 0.00 0.00 3.95
3092 3252 7.195646 TGTTCTAGTCAAGTTCAGCAAAAATG 58.804 34.615 0.00 0.00 0.00 2.32
3139 3299 3.055312 AGAATTTTGGGACGGAGGAGTAC 60.055 47.826 0.00 0.00 0.00 2.73
3140 3300 3.178865 AGAATTTTGGGACGGAGGAGTA 58.821 45.455 0.00 0.00 0.00 2.59
3141 3301 1.985895 AGAATTTTGGGACGGAGGAGT 59.014 47.619 0.00 0.00 0.00 3.85
3142 3302 2.749621 CAAGAATTTTGGGACGGAGGAG 59.250 50.000 0.00 0.00 0.00 3.69
3143 3303 2.107552 ACAAGAATTTTGGGACGGAGGA 59.892 45.455 0.00 0.00 0.00 3.71
3144 3304 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3145 3305 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3146 3306 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3147 3307 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3148 3308 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3149 3309 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3150 3310 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3151 3311 7.814587 GGACAAATCTAAGACAAGAATTTTGGG 59.185 37.037 0.00 0.00 33.04 4.12
3152 3312 8.359642 TGGACAAATCTAAGACAAGAATTTTGG 58.640 33.333 0.00 0.00 33.04 3.28
3153 3313 9.748708 TTGGACAAATCTAAGACAAGAATTTTG 57.251 29.630 0.00 0.00 34.13 2.44
3158 3318 8.717821 CGTATTTGGACAAATCTAAGACAAGAA 58.282 33.333 13.07 0.00 40.99 2.52
3159 3319 7.333423 CCGTATTTGGACAAATCTAAGACAAGA 59.667 37.037 13.07 0.00 40.99 3.02
3160 3320 7.333423 TCCGTATTTGGACAAATCTAAGACAAG 59.667 37.037 13.07 2.30 40.99 3.16
3161 3321 7.162761 TCCGTATTTGGACAAATCTAAGACAA 58.837 34.615 13.07 0.00 40.99 3.18
3162 3322 6.703319 TCCGTATTTGGACAAATCTAAGACA 58.297 36.000 13.07 0.00 40.99 3.41
3163 3323 7.280205 ACATCCGTATTTGGACAAATCTAAGAC 59.720 37.037 13.07 5.74 41.85 3.01
3164 3324 7.335627 ACATCCGTATTTGGACAAATCTAAGA 58.664 34.615 13.07 7.57 41.85 2.10
3165 3325 7.553881 ACATCCGTATTTGGACAAATCTAAG 57.446 36.000 13.07 1.07 41.85 2.18
3166 3326 9.268268 GATACATCCGTATTTGGACAAATCTAA 57.732 33.333 13.07 0.00 41.85 2.10
3167 3327 8.425703 TGATACATCCGTATTTGGACAAATCTA 58.574 33.333 13.07 0.00 41.85 1.98
3168 3328 7.279615 TGATACATCCGTATTTGGACAAATCT 58.720 34.615 13.07 0.00 41.85 2.40
3169 3329 7.490962 TGATACATCCGTATTTGGACAAATC 57.509 36.000 13.07 5.63 41.85 2.17
3170 3330 7.556275 ACTTGATACATCCGTATTTGGACAAAT 59.444 33.333 14.02 14.02 41.85 2.32
3171 3331 6.882140 ACTTGATACATCCGTATTTGGACAAA 59.118 34.615 0.00 0.00 41.85 2.83
3172 3332 6.411376 ACTTGATACATCCGTATTTGGACAA 58.589 36.000 0.00 0.00 41.85 3.18
3173 3333 5.984725 ACTTGATACATCCGTATTTGGACA 58.015 37.500 0.00 0.00 41.85 4.02
3174 3334 6.018994 GTGACTTGATACATCCGTATTTGGAC 60.019 42.308 0.00 0.00 41.85 4.02
3175 3335 6.046593 GTGACTTGATACATCCGTATTTGGA 58.953 40.000 0.00 0.00 43.58 3.53
3176 3336 5.051039 CGTGACTTGATACATCCGTATTTGG 60.051 44.000 0.00 0.00 38.48 3.28
3177 3337 5.518847 ACGTGACTTGATACATCCGTATTTG 59.481 40.000 0.00 0.00 38.48 2.32
3178 3338 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
3179 3339 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
3180 3340 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
3181 3341 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
3182 3342 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
3183 3343 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
3184 3344 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
3187 3347 9.577110 CCTAATACTAAAACGTGACTTGATACA 57.423 33.333 0.00 0.00 0.00 2.29
3188 3348 9.578439 ACCTAATACTAAAACGTGACTTGATAC 57.422 33.333 0.00 0.00 0.00 2.24
3190 3350 9.578439 GTACCTAATACTAAAACGTGACTTGAT 57.422 33.333 0.00 0.00 0.00 2.57
3191 3351 8.575589 TGTACCTAATACTAAAACGTGACTTGA 58.424 33.333 0.00 0.00 34.56 3.02
3192 3352 8.746922 TGTACCTAATACTAAAACGTGACTTG 57.253 34.615 0.00 0.00 34.56 3.16
3193 3353 9.578439 GATGTACCTAATACTAAAACGTGACTT 57.422 33.333 0.00 0.00 34.56 3.01
3194 3354 8.193438 GGATGTACCTAATACTAAAACGTGACT 58.807 37.037 0.00 0.00 34.56 3.41
3195 3355 7.166473 CGGATGTACCTAATACTAAAACGTGAC 59.834 40.741 0.00 0.00 34.56 3.67
3196 3356 7.148086 ACGGATGTACCTAATACTAAAACGTGA 60.148 37.037 0.00 0.00 34.56 4.35
3197 3357 6.974622 ACGGATGTACCTAATACTAAAACGTG 59.025 38.462 0.00 0.00 34.56 4.49
3198 3358 7.100458 ACGGATGTACCTAATACTAAAACGT 57.900 36.000 0.00 0.00 34.56 3.99
3199 3359 9.334693 GATACGGATGTACCTAATACTAAAACG 57.665 37.037 0.00 0.00 34.56 3.60
3205 3365 8.600668 TGTCTAGATACGGATGTACCTAATACT 58.399 37.037 0.00 0.00 34.56 2.12
3206 3366 8.783833 TGTCTAGATACGGATGTACCTAATAC 57.216 38.462 0.00 0.00 36.31 1.89
3207 3367 9.797642 TTTGTCTAGATACGGATGTACCTAATA 57.202 33.333 0.00 0.00 36.31 0.98
3208 3368 8.701908 TTTGTCTAGATACGGATGTACCTAAT 57.298 34.615 0.00 0.00 36.31 1.73
3209 3369 8.701908 ATTTGTCTAGATACGGATGTACCTAA 57.298 34.615 0.00 0.00 36.31 2.69
3210 3370 8.162085 AGATTTGTCTAGATACGGATGTACCTA 58.838 37.037 0.00 0.00 36.31 3.08
3211 3371 7.005296 AGATTTGTCTAGATACGGATGTACCT 58.995 38.462 0.00 0.00 36.31 3.08
3212 3372 7.216973 AGATTTGTCTAGATACGGATGTACC 57.783 40.000 0.00 0.00 32.26 3.34
3213 3373 9.828852 CTTAGATTTGTCTAGATACGGATGTAC 57.171 37.037 0.00 0.00 32.26 2.90
3214 3374 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
3215 3375 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
3216 3376 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
3217 3377 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
3218 3378 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3219 3379 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
3230 3390 9.322776 CGTCTCAAAATTCTTGTCTTAGATTTG 57.677 33.333 0.00 0.00 30.65 2.32
3231 3391 8.507249 CCGTCTCAAAATTCTTGTCTTAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
3232 3392 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
3233 3393 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
3234 3394 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
3235 3395 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
3236 3396 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
3237 3397 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
3238 3398 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
3239 3399 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
3240 3400 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
3241 3401 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
3242 3402 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
3243 3403 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
3244 3404 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
3245 3405 3.055312 GGTACTCCCTCCGTCTCAAAATT 60.055 47.826 0.00 0.00 0.00 1.82
3246 3406 2.500504 GGTACTCCCTCCGTCTCAAAAT 59.499 50.000 0.00 0.00 0.00 1.82
3247 3407 1.897802 GGTACTCCCTCCGTCTCAAAA 59.102 52.381 0.00 0.00 0.00 2.44
3248 3408 1.076677 AGGTACTCCCTCCGTCTCAAA 59.923 52.381 0.00 0.00 40.71 2.69
3249 3409 0.702902 AGGTACTCCCTCCGTCTCAA 59.297 55.000 0.00 0.00 40.71 3.02
3250 3410 1.588239 TAGGTACTCCCTCCGTCTCA 58.412 55.000 0.00 0.00 44.81 3.27
3251 3411 2.725221 TTAGGTACTCCCTCCGTCTC 57.275 55.000 0.00 0.00 44.81 3.36
3252 3412 2.512896 TCATTAGGTACTCCCTCCGTCT 59.487 50.000 0.00 0.00 44.81 4.18
3253 3413 2.941480 TCATTAGGTACTCCCTCCGTC 58.059 52.381 0.00 0.00 44.81 4.79
3254 3414 3.297736 CTTCATTAGGTACTCCCTCCGT 58.702 50.000 0.00 0.00 44.81 4.69
3255 3415 2.036089 GCTTCATTAGGTACTCCCTCCG 59.964 54.545 0.00 0.00 44.81 4.63
3256 3416 3.039011 TGCTTCATTAGGTACTCCCTCC 58.961 50.000 0.00 0.00 44.81 4.30
3257 3417 4.101741 ACATGCTTCATTAGGTACTCCCTC 59.898 45.833 0.00 0.00 44.81 4.30
3259 3419 4.130118 CACATGCTTCATTAGGTACTCCC 58.870 47.826 0.00 0.00 41.75 4.30
3260 3420 4.770795 ACACATGCTTCATTAGGTACTCC 58.229 43.478 0.00 0.00 41.75 3.85
3261 3421 7.519008 GCAATACACATGCTTCATTAGGTACTC 60.519 40.741 0.00 0.00 39.44 2.59
3262 3422 6.260936 GCAATACACATGCTTCATTAGGTACT 59.739 38.462 0.00 0.00 41.03 2.73
3268 3428 6.807720 CAGTTTGCAATACACATGCTTCATTA 59.192 34.615 0.00 0.00 44.14 1.90
3340 3500 4.098960 CAGCTCATATGCACCTTCCATTTT 59.901 41.667 0.00 0.00 34.99 1.82
3341 3501 3.635373 CAGCTCATATGCACCTTCCATTT 59.365 43.478 0.00 0.00 34.99 2.32
3405 3565 1.939934 CGACGCACACCAATAATCCAT 59.060 47.619 0.00 0.00 0.00 3.41
3422 3582 2.490115 ACACTCTTGACTCAGATCCGAC 59.510 50.000 0.00 0.00 0.00 4.79
3425 3585 4.527509 TTCACACTCTTGACTCAGATCC 57.472 45.455 0.00 0.00 0.00 3.36
3514 3675 6.906157 TGCATTTTCCTGAGATTTTTCTCT 57.094 33.333 4.76 0.00 37.62 3.10
3560 3721 2.949451 AATAGCCTCCTATCGATGCG 57.051 50.000 8.54 0.00 37.22 4.73
3593 3754 6.318628 TGATGTAATTGCACAATCGGTTTAC 58.681 36.000 0.00 0.00 30.84 2.01
3677 3839 7.280205 CGGTTAAGGAGCATAAGTACATTTCTT 59.720 37.037 0.00 0.00 0.00 2.52
3702 3870 0.673644 AGCCCGGTTTTGAGTCATCG 60.674 55.000 0.00 0.00 0.00 3.84
3835 4003 9.627123 CAACCATTCTGAATATTTACCCTCTTA 57.373 33.333 1.98 0.00 0.00 2.10
3841 4009 7.556275 TGAGGACAACCATTCTGAATATTTACC 59.444 37.037 1.98 6.62 38.94 2.85
3845 4014 7.121759 CACTTGAGGACAACCATTCTGAATATT 59.878 37.037 1.98 0.00 38.94 1.28
3849 4018 4.136796 CACTTGAGGACAACCATTCTGAA 58.863 43.478 0.00 0.00 38.94 3.02
3886 4058 7.775397 ATAACATTTGATAATTGCTGCAACC 57.225 32.000 18.51 7.94 0.00 3.77
3903 4075 8.458573 TGAAGTTTGTGTTCAGGTATAACATT 57.541 30.769 0.00 0.00 38.95 2.71
3949 4126 0.888619 TCCAGACTGACACTAAGGCG 59.111 55.000 3.32 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.