Multiple sequence alignment - TraesCS5B01G494400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G494400 chr5B 100.000 4063 0 0 1 4063 662038159 662034097 0.000000e+00 7504.0
1 TraesCS5B01G494400 chr5B 84.278 547 46 21 1785 2323 668583996 668584510 7.840000e-137 497.0
2 TraesCS5B01G494400 chr5B 87.302 378 28 9 2176 2550 668593921 668594281 8.120000e-112 414.0
3 TraesCS5B01G494400 chr5B 83.333 342 33 10 1785 2123 668593277 668593597 1.100000e-75 294.0
4 TraesCS5B01G494400 chr5B 94.375 160 9 0 1407 1566 668593101 668593260 3.140000e-61 246.0
5 TraesCS5B01G494400 chr5B 85.317 252 19 6 2310 2554 668584670 668584910 1.130000e-60 244.0
6 TraesCS5B01G494400 chr5B 93.590 156 8 2 1253 1406 668587278 668587433 8.780000e-57 231.0
7 TraesCS5B01G494400 chr5B 82.231 242 18 6 2651 2886 668585437 668585659 6.930000e-43 185.0
8 TraesCS5B01G494400 chr5B 82.231 242 18 7 2651 2886 668594911 668595133 6.930000e-43 185.0
9 TraesCS5B01G494400 chr5B 75.656 419 62 33 1117 1523 619927327 619926937 5.400000e-39 172.0
10 TraesCS5B01G494400 chr5B 95.604 91 2 2 1775 1864 668583878 668583967 1.180000e-30 145.0
11 TraesCS5B01G494400 chr5B 87.395 119 15 0 1 119 493564073 493563955 1.970000e-28 137.0
12 TraesCS5B01G494400 chr5B 85.470 117 15 2 1 116 428141821 428141936 1.980000e-23 121.0
13 TraesCS5B01G494400 chr5B 97.183 71 2 0 2879 2949 668606596 668606666 1.980000e-23 121.0
14 TraesCS5B01G494400 chr5D 87.182 2512 129 64 116 2553 526573209 526570817 0.000000e+00 2676.0
15 TraesCS5B01G494400 chr5D 82.935 1424 98 80 2695 4063 526570333 526569000 0.000000e+00 1149.0
16 TraesCS5B01G494400 chr5D 76.303 422 63 29 1117 1523 499246713 499246314 1.490000e-44 191.0
17 TraesCS5B01G494400 chr5D 86.957 138 7 5 3168 3294 309717729 309717866 1.180000e-30 145.0
18 TraesCS5B01G494400 chr5D 82.456 114 20 0 3 116 464025614 464025501 2.580000e-17 100.0
19 TraesCS5B01G494400 chr5D 85.714 70 1 2 2554 2623 526570483 526570423 9.430000e-07 65.8
20 TraesCS5B01G494400 chr5A 82.550 1106 77 60 661 1682 653717756 653716683 0.000000e+00 867.0
21 TraesCS5B01G494400 chr5A 83.527 862 70 34 2695 3535 653715538 653714728 0.000000e+00 739.0
22 TraesCS5B01G494400 chr5A 79.153 307 30 15 1747 2022 653716669 653716366 8.970000e-42 182.0
23 TraesCS5B01G494400 chr5A 75.476 420 65 33 1117 1523 623504422 623504028 1.940000e-38 171.0
24 TraesCS5B01G494400 chr5A 75.403 248 38 13 2298 2540 653716214 653715985 9.290000e-17 99.0
25 TraesCS5B01G494400 chr1A 77.823 487 72 26 1105 1574 495193088 495192621 6.690000e-68 268.0
26 TraesCS5B01G494400 chr1A 86.861 137 7 5 3168 3293 86564289 86564425 4.230000e-30 143.0
27 TraesCS5B01G494400 chr1D 81.538 325 46 8 1251 1574 397973931 397973620 5.210000e-64 255.0
28 TraesCS5B01G494400 chr1B 80.923 325 48 9 1251 1574 533324651 533324340 1.130000e-60 244.0
29 TraesCS5B01G494400 chr3A 80.488 328 48 13 1251 1576 594492470 594492783 1.890000e-58 237.0
30 TraesCS5B01G494400 chr3A 86.232 138 8 5 3168 3294 620783724 620783861 5.480000e-29 139.0
31 TraesCS5B01G494400 chr3A 90.291 103 7 1 3194 3293 539299044 539298942 9.160000e-27 132.0
32 TraesCS5B01G494400 chr3D 80.428 327 48 13 1252 1576 451885579 451885891 6.790000e-58 235.0
33 TraesCS5B01G494400 chr3D 80.183 328 49 13 1251 1576 451710101 451710414 8.780000e-57 231.0
34 TraesCS5B01G494400 chr3D 78.067 269 47 11 1252 1517 157443377 157443118 4.200000e-35 159.0
35 TraesCS5B01G494400 chr3B 79.141 326 52 13 1251 1574 593541304 593541615 1.140000e-50 211.0
36 TraesCS5B01G494400 chr3B 78.834 326 53 13 1251 1574 593163820 593164131 5.320000e-49 206.0
37 TraesCS5B01G494400 chr6D 76.991 339 68 9 1251 1581 396011208 396010872 6.930000e-43 185.0
38 TraesCS5B01G494400 chr6D 80.342 117 22 1 1 116 411248673 411248789 2.010000e-13 87.9
39 TraesCS5B01G494400 chr6A 77.059 340 66 10 1251 1581 542430786 542430450 6.930000e-43 185.0
40 TraesCS5B01G494400 chr4A 79.008 262 47 7 1251 1511 621009748 621009494 5.400000e-39 172.0
41 TraesCS5B01G494400 chr4A 86.131 137 7 6 3168 3293 75131376 75131241 1.970000e-28 137.0
42 TraesCS5B01G494400 chr4A 85.507 138 9 5 3168 3294 67424686 67424823 2.550000e-27 134.0
43 TraesCS5B01G494400 chr4A 81.897 116 19 2 2 116 104408058 104408172 3.340000e-16 97.1
44 TraesCS5B01G494400 chr2A 76.627 338 59 19 1246 1575 29989770 29990095 6.980000e-38 169.0
45 TraesCS5B01G494400 chr2A 87.324 71 9 0 53 123 659995183 659995113 9.360000e-12 82.4
46 TraesCS5B01G494400 chr2D 87.681 138 6 5 3168 3294 648400275 648400412 2.530000e-32 150.0
47 TraesCS5B01G494400 chr2D 88.034 117 12 2 1 116 2037479 2037594 1.970000e-28 137.0
48 TraesCS5B01G494400 chr4B 89.744 117 10 2 1 116 558038305 558038420 9.100000e-32 148.0
49 TraesCS5B01G494400 chr4B 95.745 47 2 0 1127 1173 547184605 547184651 4.350000e-10 76.8
50 TraesCS5B01G494400 chr2B 75.371 337 65 17 1246 1575 44159060 44159385 3.270000e-31 147.0
51 TraesCS5B01G494400 chr2B 87.395 119 15 0 1 119 662349391 662349273 1.970000e-28 137.0
52 TraesCS5B01G494400 chr7A 85.401 137 9 4 3168 3293 352831403 352831539 9.160000e-27 132.0
53 TraesCS5B01G494400 chr4D 95.745 47 2 0 1127 1173 441118095 441118141 4.350000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G494400 chr5B 662034097 662038159 4062 True 7504.000000 7504 100.00000 1 4063 1 chr5B.!!$R3 4062
1 TraesCS5B01G494400 chr5B 668593101 668595133 2032 False 284.750000 414 86.81025 1407 2886 4 chr5B.!!$F4 1479
2 TraesCS5B01G494400 chr5B 668583878 668587433 3555 False 260.400000 497 88.20400 1253 2886 5 chr5B.!!$F3 1633
3 TraesCS5B01G494400 chr5D 526569000 526573209 4209 True 1296.933333 2676 85.27700 116 4063 3 chr5D.!!$R3 3947
4 TraesCS5B01G494400 chr5A 653714728 653717756 3028 True 471.750000 867 80.15825 661 3535 4 chr5A.!!$R2 2874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.107643 TCAATGAACACAGCCGGACA 59.892 50.0 5.05 0.00 0.00 4.02 F
340 358 0.178973 TCTAGATTGGGATCGCGGGA 60.179 55.0 6.13 4.03 37.37 5.14 F
362 380 0.248458 CATGCGCCCGGATTTTGTAC 60.248 55.0 0.73 0.00 0.00 2.90 F
2200 2771 0.468585 ATCTATGTGTACGGCCGGGA 60.469 55.0 31.76 14.80 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2284 0.107848 AGCAGCCCATGTTACCGTAC 60.108 55.0 0.0 0.0 0.00 3.67 R
2313 3057 0.313043 ACTCGTACCACGACACAAGG 59.687 55.0 0.0 0.0 46.73 3.61 R
2314 3058 2.975410 TACTCGTACCACGACACAAG 57.025 50.0 0.0 0.0 46.73 3.16 R
3899 6047 0.312102 GCAAACTCGCTTCTGCCTTT 59.688 50.0 0.0 0.0 35.36 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.777925 GCGCACGCACGACTCAAT 61.778 61.111 10.65 0.00 41.49 2.57
19 20 2.094539 CGCACGCACGACTCAATG 59.905 61.111 0.00 0.00 34.06 2.82
20 21 2.371923 CGCACGCACGACTCAATGA 61.372 57.895 0.00 0.00 34.06 2.57
21 22 1.859398 GCACGCACGACTCAATGAA 59.141 52.632 0.00 0.00 0.00 2.57
22 23 0.451135 GCACGCACGACTCAATGAAC 60.451 55.000 0.00 0.00 0.00 3.18
23 24 0.858583 CACGCACGACTCAATGAACA 59.141 50.000 0.00 0.00 0.00 3.18
24 25 0.859232 ACGCACGACTCAATGAACAC 59.141 50.000 0.00 0.00 0.00 3.32
25 26 0.858583 CGCACGACTCAATGAACACA 59.141 50.000 0.00 0.00 0.00 3.72
26 27 1.136529 CGCACGACTCAATGAACACAG 60.137 52.381 0.00 0.00 0.00 3.66
27 28 1.398960 GCACGACTCAATGAACACAGC 60.399 52.381 0.00 0.00 0.00 4.40
28 29 1.195448 CACGACTCAATGAACACAGCC 59.805 52.381 0.00 0.00 0.00 4.85
29 30 0.439985 CGACTCAATGAACACAGCCG 59.560 55.000 0.00 0.00 0.00 5.52
30 31 0.798776 GACTCAATGAACACAGCCGG 59.201 55.000 0.00 0.00 0.00 6.13
31 32 0.396435 ACTCAATGAACACAGCCGGA 59.604 50.000 5.05 0.00 0.00 5.14
32 33 0.798776 CTCAATGAACACAGCCGGAC 59.201 55.000 5.05 0.00 0.00 4.79
33 34 0.107643 TCAATGAACACAGCCGGACA 59.892 50.000 5.05 0.00 0.00 4.02
34 35 0.238289 CAATGAACACAGCCGGACAC 59.762 55.000 5.05 0.00 0.00 3.67
35 36 1.227999 AATGAACACAGCCGGACACG 61.228 55.000 5.05 0.00 40.55 4.49
45 46 3.829044 CGGACACGGGCGTATCCA 61.829 66.667 0.00 0.00 41.50 3.41
46 47 2.819550 GGACACGGGCGTATCCAT 59.180 61.111 0.00 0.00 41.11 3.41
47 48 1.300697 GGACACGGGCGTATCCATC 60.301 63.158 0.00 0.00 41.11 3.51
48 49 1.440060 GACACGGGCGTATCCATCA 59.560 57.895 0.00 0.00 36.21 3.07
49 50 0.179094 GACACGGGCGTATCCATCAA 60.179 55.000 0.00 0.00 36.21 2.57
50 51 0.461339 ACACGGGCGTATCCATCAAC 60.461 55.000 0.00 0.00 36.21 3.18
51 52 1.227147 ACGGGCGTATCCATCAACG 60.227 57.895 0.00 0.00 41.92 4.10
55 56 4.043168 CGTATCCATCAACGCCCC 57.957 61.111 0.00 0.00 31.66 5.80
56 57 1.145156 CGTATCCATCAACGCCCCA 59.855 57.895 0.00 0.00 31.66 4.96
57 58 0.462937 CGTATCCATCAACGCCCCAA 60.463 55.000 0.00 0.00 31.66 4.12
58 59 1.757682 GTATCCATCAACGCCCCAAA 58.242 50.000 0.00 0.00 0.00 3.28
59 60 1.676006 GTATCCATCAACGCCCCAAAG 59.324 52.381 0.00 0.00 0.00 2.77
60 61 0.684153 ATCCATCAACGCCCCAAAGG 60.684 55.000 0.00 0.00 39.47 3.11
61 62 1.304052 CCATCAACGCCCCAAAGGA 60.304 57.895 0.00 0.00 38.24 3.36
62 63 0.897863 CCATCAACGCCCCAAAGGAA 60.898 55.000 0.00 0.00 38.24 3.36
63 64 0.243636 CATCAACGCCCCAAAGGAAC 59.756 55.000 0.00 0.00 38.24 3.62
64 65 0.178975 ATCAACGCCCCAAAGGAACA 60.179 50.000 0.00 0.00 38.24 3.18
65 66 0.395862 TCAACGCCCCAAAGGAACAA 60.396 50.000 0.00 0.00 38.24 2.83
66 67 0.461961 CAACGCCCCAAAGGAACAAA 59.538 50.000 0.00 0.00 38.24 2.83
67 68 1.134670 CAACGCCCCAAAGGAACAAAA 60.135 47.619 0.00 0.00 38.24 2.44
68 69 1.419381 ACGCCCCAAAGGAACAAAAT 58.581 45.000 0.00 0.00 38.24 1.82
69 70 1.343142 ACGCCCCAAAGGAACAAAATC 59.657 47.619 0.00 0.00 38.24 2.17
70 71 1.337728 CGCCCCAAAGGAACAAAATCC 60.338 52.381 0.00 0.00 38.24 3.01
71 72 1.696884 GCCCCAAAGGAACAAAATCCA 59.303 47.619 0.00 0.00 42.27 3.41
72 73 2.289631 GCCCCAAAGGAACAAAATCCAG 60.290 50.000 0.00 0.00 42.27 3.86
73 74 2.972021 CCCCAAAGGAACAAAATCCAGT 59.028 45.455 0.00 0.00 42.27 4.00
74 75 3.006859 CCCCAAAGGAACAAAATCCAGTC 59.993 47.826 0.00 0.00 42.27 3.51
75 76 3.640967 CCCAAAGGAACAAAATCCAGTCA 59.359 43.478 0.00 0.00 42.27 3.41
76 77 4.100808 CCCAAAGGAACAAAATCCAGTCAA 59.899 41.667 0.00 0.00 42.27 3.18
77 78 5.221702 CCCAAAGGAACAAAATCCAGTCAAT 60.222 40.000 0.00 0.00 42.27 2.57
78 79 5.928264 CCAAAGGAACAAAATCCAGTCAATC 59.072 40.000 0.00 0.00 42.27 2.67
79 80 5.728637 AAGGAACAAAATCCAGTCAATCC 57.271 39.130 0.00 0.00 42.27 3.01
80 81 3.758554 AGGAACAAAATCCAGTCAATCCG 59.241 43.478 0.00 0.00 42.27 4.18
81 82 3.119495 GGAACAAAATCCAGTCAATCCGG 60.119 47.826 0.00 0.00 39.42 5.14
82 83 3.433306 ACAAAATCCAGTCAATCCGGA 57.567 42.857 6.61 6.61 0.00 5.14
83 84 3.081804 ACAAAATCCAGTCAATCCGGAC 58.918 45.455 6.12 0.00 38.08 4.79
84 85 2.024176 AAATCCAGTCAATCCGGACG 57.976 50.000 6.12 0.00 42.62 4.79
85 86 0.902531 AATCCAGTCAATCCGGACGT 59.097 50.000 6.12 0.00 42.62 4.34
86 87 0.460311 ATCCAGTCAATCCGGACGTC 59.540 55.000 6.12 7.13 42.62 4.34
87 88 0.611062 TCCAGTCAATCCGGACGTCT 60.611 55.000 16.46 0.76 42.62 4.18
88 89 0.458543 CCAGTCAATCCGGACGTCTG 60.459 60.000 17.81 17.81 42.62 3.51
89 90 0.243907 CAGTCAATCCGGACGTCTGT 59.756 55.000 22.45 2.45 42.62 3.41
90 91 0.966920 AGTCAATCCGGACGTCTGTT 59.033 50.000 22.45 8.92 42.62 3.16
91 92 1.343465 AGTCAATCCGGACGTCTGTTT 59.657 47.619 22.45 12.90 42.62 2.83
92 93 1.459592 GTCAATCCGGACGTCTGTTTG 59.540 52.381 22.45 22.29 0.00 2.93
93 94 0.796312 CAATCCGGACGTCTGTTTGG 59.204 55.000 22.45 12.98 0.00 3.28
94 95 0.321298 AATCCGGACGTCTGTTTGGG 60.321 55.000 22.45 7.39 0.00 4.12
95 96 2.180159 ATCCGGACGTCTGTTTGGGG 62.180 60.000 22.45 6.68 0.00 4.96
96 97 2.424302 CGGACGTCTGTTTGGGGT 59.576 61.111 16.54 0.00 0.00 4.95
97 98 1.666872 CGGACGTCTGTTTGGGGTC 60.667 63.158 16.54 0.00 0.00 4.46
98 99 1.666872 GGACGTCTGTTTGGGGTCG 60.667 63.158 16.46 0.00 0.00 4.79
99 100 1.068585 GACGTCTGTTTGGGGTCGT 59.931 57.895 8.70 0.00 0.00 4.34
100 101 1.219522 GACGTCTGTTTGGGGTCGTG 61.220 60.000 8.70 0.00 0.00 4.35
101 102 2.604174 CGTCTGTTTGGGGTCGTGC 61.604 63.158 0.00 0.00 0.00 5.34
102 103 2.280524 TCTGTTTGGGGTCGTGCG 60.281 61.111 0.00 0.00 0.00 5.34
103 104 2.280524 CTGTTTGGGGTCGTGCGA 60.281 61.111 0.00 0.00 0.00 5.10
104 105 1.671054 CTGTTTGGGGTCGTGCGAT 60.671 57.895 0.00 0.00 0.00 4.58
105 106 1.911293 CTGTTTGGGGTCGTGCGATG 61.911 60.000 0.00 0.00 0.00 3.84
106 107 2.359354 TTTGGGGTCGTGCGATGG 60.359 61.111 0.00 0.00 0.00 3.51
107 108 2.884980 TTTGGGGTCGTGCGATGGA 61.885 57.895 0.00 0.00 0.00 3.41
108 109 2.796483 TTTGGGGTCGTGCGATGGAG 62.796 60.000 0.00 0.00 0.00 3.86
109 110 3.771160 GGGGTCGTGCGATGGAGT 61.771 66.667 0.00 0.00 0.00 3.85
110 111 2.264794 GGGTCGTGCGATGGAGTT 59.735 61.111 0.00 0.00 0.00 3.01
111 112 2.100631 GGGTCGTGCGATGGAGTTG 61.101 63.158 0.00 0.00 0.00 3.16
112 113 2.100631 GGTCGTGCGATGGAGTTGG 61.101 63.158 0.00 0.00 0.00 3.77
113 114 2.434185 TCGTGCGATGGAGTTGGC 60.434 61.111 0.00 0.00 0.00 4.52
114 115 3.499737 CGTGCGATGGAGTTGGCC 61.500 66.667 0.00 0.00 0.00 5.36
195 196 4.838486 CGTCCGTCCGCTCTGCTC 62.838 72.222 0.00 0.00 0.00 4.26
196 197 3.444805 GTCCGTCCGCTCTGCTCT 61.445 66.667 0.00 0.00 0.00 4.09
204 205 2.187424 GCTCTGCTCTGCTCCTGG 59.813 66.667 0.00 0.00 0.00 4.45
212 213 4.479993 CTGCTCCTGGCCCGGAAG 62.480 72.222 17.55 8.87 40.92 3.46
237 238 3.069586 AGAATCATGGCTGGCAATCAATG 59.930 43.478 8.35 1.33 0.00 2.82
266 267 3.011566 TCCAACATTTACCGCCATCAT 57.988 42.857 0.00 0.00 0.00 2.45
274 275 2.700722 TACCGCCATCATTTACAGCA 57.299 45.000 0.00 0.00 0.00 4.41
277 278 1.064505 CCGCCATCATTTACAGCAGTG 59.935 52.381 0.00 0.00 0.00 3.66
280 281 2.165030 GCCATCATTTACAGCAGTGCTT 59.835 45.455 16.89 9.85 36.40 3.91
281 282 3.733077 GCCATCATTTACAGCAGTGCTTC 60.733 47.826 16.89 0.00 36.40 3.86
282 283 3.441222 CCATCATTTACAGCAGTGCTTCA 59.559 43.478 16.89 2.65 36.40 3.02
283 284 4.082625 CCATCATTTACAGCAGTGCTTCAA 60.083 41.667 16.89 9.53 36.40 2.69
284 285 5.393787 CCATCATTTACAGCAGTGCTTCAAT 60.394 40.000 16.89 10.88 36.40 2.57
285 286 5.050644 TCATTTACAGCAGTGCTTCAATG 57.949 39.130 23.31 23.31 36.40 2.82
287 288 4.916983 TTTACAGCAGTGCTTCAATGTT 57.083 36.364 16.89 0.00 36.40 2.71
288 289 6.206438 TCATTTACAGCAGTGCTTCAATGTTA 59.794 34.615 25.78 12.37 36.40 2.41
291 292 5.458041 ACAGCAGTGCTTCAATGTTATTT 57.542 34.783 16.89 0.00 36.40 1.40
314 332 1.213537 CAAGCAGGTCCGCAATTGG 59.786 57.895 7.72 0.00 0.00 3.16
319 337 1.247567 CAGGTCCGCAATTGGTCTTT 58.752 50.000 7.72 0.00 0.00 2.52
337 355 4.025647 GTCTTTTTCTAGATTGGGATCGCG 60.026 45.833 0.00 0.00 37.37 5.87
339 357 0.679505 TTCTAGATTGGGATCGCGGG 59.320 55.000 6.13 0.00 37.37 6.13
340 358 0.178973 TCTAGATTGGGATCGCGGGA 60.179 55.000 6.13 4.03 37.37 5.14
357 375 1.455383 GGAATCATGCGCCCGGATTT 61.455 55.000 16.19 0.00 31.77 2.17
360 378 1.037030 ATCATGCGCCCGGATTTTGT 61.037 50.000 0.73 0.00 0.00 2.83
361 379 0.393132 TCATGCGCCCGGATTTTGTA 60.393 50.000 0.73 0.00 0.00 2.41
362 380 0.248458 CATGCGCCCGGATTTTGTAC 60.248 55.000 0.73 0.00 0.00 2.90
409 427 5.414454 CGAAATCCCTGACAATTAGGACAAA 59.586 40.000 0.00 0.00 37.52 2.83
419 437 5.783111 ACAATTAGGACAAACCAGCAAATC 58.217 37.500 0.00 0.00 42.04 2.17
423 441 7.716799 ATTAGGACAAACCAGCAAATCATTA 57.283 32.000 0.00 0.00 42.04 1.90
424 442 7.531857 TTAGGACAAACCAGCAAATCATTAA 57.468 32.000 0.00 0.00 42.04 1.40
434 452 6.153340 ACCAGCAAATCATTAAGCATTGTACT 59.847 34.615 0.00 0.00 0.00 2.73
435 453 7.339212 ACCAGCAAATCATTAAGCATTGTACTA 59.661 33.333 0.00 0.00 0.00 1.82
436 454 7.645340 CCAGCAAATCATTAAGCATTGTACTAC 59.355 37.037 0.00 0.00 0.00 2.73
437 455 8.183536 CAGCAAATCATTAAGCATTGTACTACA 58.816 33.333 0.00 0.00 0.00 2.74
450 468 8.482943 AGCATTGTACTACATACTGGTGAAATA 58.517 33.333 0.00 0.00 34.56 1.40
508 526 3.802613 CAGAGTACTGCTGCGAAGT 57.197 52.632 0.00 0.00 37.33 3.01
526 544 1.705186 AGTCCAAACAGTGCCAGGTAT 59.295 47.619 0.00 0.00 0.00 2.73
527 545 2.910319 AGTCCAAACAGTGCCAGGTATA 59.090 45.455 0.00 0.00 0.00 1.47
528 546 3.055094 AGTCCAAACAGTGCCAGGTATAG 60.055 47.826 0.00 0.00 0.00 1.31
529 547 2.017049 CCAAACAGTGCCAGGTATAGC 58.983 52.381 0.00 0.00 0.00 2.97
546 566 2.787866 CAGGGAGGGAGGGAGGAA 59.212 66.667 0.00 0.00 0.00 3.36
563 583 4.021894 GGAGGAAGAAGAAAGAAAAAGGGC 60.022 45.833 0.00 0.00 0.00 5.19
583 603 2.032071 GGTCCCAACTGTCCACGG 59.968 66.667 0.00 0.00 0.00 4.94
600 620 1.746615 GGCGCTTTCCATCAGAGCA 60.747 57.895 7.64 0.00 38.71 4.26
605 625 1.699656 CTTTCCATCAGAGCACGGCG 61.700 60.000 4.80 4.80 0.00 6.46
606 626 3.664025 TTCCATCAGAGCACGGCGG 62.664 63.158 13.24 0.66 0.00 6.13
624 644 4.717629 CCACGAGACGAAGCGGCA 62.718 66.667 1.45 0.00 37.34 5.69
625 645 3.175240 CACGAGACGAAGCGGCAG 61.175 66.667 1.45 0.00 37.34 4.85
638 658 4.626081 GGCAGCACGGTGACAGGT 62.626 66.667 13.29 0.00 0.00 4.00
639 659 3.349006 GCAGCACGGTGACAGGTG 61.349 66.667 13.29 1.49 36.80 4.00
683 703 2.539547 CCATCAATGGCTAAAACGAGCG 60.540 50.000 0.00 0.00 43.83 5.03
726 752 3.505184 CGCCCGTCCAATTTCCGG 61.505 66.667 0.00 0.00 41.37 5.14
811 860 1.966451 GCGGATTGGATTAGCCCCG 60.966 63.158 0.00 0.00 40.64 5.73
939 1000 4.070552 GCCGTCCACTCGCCTTCT 62.071 66.667 0.00 0.00 0.00 2.85
940 1001 2.182030 CCGTCCACTCGCCTTCTC 59.818 66.667 0.00 0.00 0.00 2.87
941 1002 2.202492 CGTCCACTCGCCTTCTCG 60.202 66.667 0.00 0.00 0.00 4.04
942 1003 2.507324 GTCCACTCGCCTTCTCGC 60.507 66.667 0.00 0.00 0.00 5.03
943 1004 3.760035 TCCACTCGCCTTCTCGCC 61.760 66.667 0.00 0.00 0.00 5.54
1061 1128 2.271497 GCTGCTGCTCCTGGTGAT 59.729 61.111 8.53 0.00 36.03 3.06
1187 1261 2.282180 GTTTTCCCTCCGCCAGCA 60.282 61.111 0.00 0.00 0.00 4.41
1209 1283 0.947244 GCGATTCCACCATGATGTCC 59.053 55.000 0.00 0.00 0.00 4.02
1374 1472 2.798689 CTTCGAGATCCGGTGCGA 59.201 61.111 0.00 3.88 39.14 5.10
1384 1482 4.379243 CGGTGCGAGAACCAGCCT 62.379 66.667 0.59 0.00 40.53 4.58
1468 1566 3.459063 AACTACGCGCTCCCCTCC 61.459 66.667 5.73 0.00 0.00 4.30
1601 1710 0.728843 ACCCCTCCCTCCCAAATCTA 59.271 55.000 0.00 0.00 0.00 1.98
1615 1724 2.817258 CAAATCTACCGCCAACTTTCCA 59.183 45.455 0.00 0.00 0.00 3.53
1616 1725 3.366052 AATCTACCGCCAACTTTCCAT 57.634 42.857 0.00 0.00 0.00 3.41
1619 1728 3.492337 TCTACCGCCAACTTTCCATTTT 58.508 40.909 0.00 0.00 0.00 1.82
1620 1729 3.892588 TCTACCGCCAACTTTCCATTTTT 59.107 39.130 0.00 0.00 0.00 1.94
1651 1760 4.095610 CGCTTGCCTAGAAATTTTTACCG 58.904 43.478 0.00 0.00 0.00 4.02
1674 1787 3.087031 AGTCAATGGGATGCTGTTTCTG 58.913 45.455 0.00 0.00 0.00 3.02
1682 1795 2.945668 GGATGCTGTTTCTGGGTCATAC 59.054 50.000 0.00 0.00 0.00 2.39
1684 1797 3.334583 TGCTGTTTCTGGGTCATACTC 57.665 47.619 0.00 0.00 0.00 2.59
1685 1798 2.027192 TGCTGTTTCTGGGTCATACTCC 60.027 50.000 0.00 0.00 0.00 3.85
1686 1799 2.237392 GCTGTTTCTGGGTCATACTCCT 59.763 50.000 0.00 0.00 0.00 3.69
1687 1800 3.451178 GCTGTTTCTGGGTCATACTCCTA 59.549 47.826 0.00 0.00 0.00 2.94
1688 1801 4.442192 GCTGTTTCTGGGTCATACTCCTAG 60.442 50.000 0.00 0.00 35.34 3.02
1689 1802 4.684724 TGTTTCTGGGTCATACTCCTAGT 58.315 43.478 0.00 0.00 35.50 2.57
1691 1804 6.441222 TGTTTCTGGGTCATACTCCTAGTAT 58.559 40.000 0.00 0.00 41.82 2.12
1693 1806 7.724506 TGTTTCTGGGTCATACTCCTAGTATAG 59.275 40.741 0.00 0.00 39.26 1.31
1694 1807 7.403837 TTCTGGGTCATACTCCTAGTATAGT 57.596 40.000 0.00 0.00 39.26 2.12
1695 1808 8.515927 TTCTGGGTCATACTCCTAGTATAGTA 57.484 38.462 0.00 0.00 39.26 1.82
1696 1809 7.915930 TCTGGGTCATACTCCTAGTATAGTAC 58.084 42.308 0.00 0.00 39.26 2.73
1697 1810 7.515166 TCTGGGTCATACTCCTAGTATAGTACA 59.485 40.741 0.00 0.00 39.26 2.90
1698 1811 7.687388 TGGGTCATACTCCTAGTATAGTACAG 58.313 42.308 0.00 0.00 39.26 2.74
1726 1839 4.335400 AAAACATTCGCCTTGGTTGAAT 57.665 36.364 4.30 4.30 32.77 2.57
1727 1840 4.335400 AAACATTCGCCTTGGTTGAATT 57.665 36.364 6.56 0.00 30.23 2.17
1728 1841 4.335400 AACATTCGCCTTGGTTGAATTT 57.665 36.364 6.56 0.39 30.23 1.82
1729 1842 5.461032 AACATTCGCCTTGGTTGAATTTA 57.539 34.783 6.56 0.00 30.23 1.40
1730 1843 5.659440 ACATTCGCCTTGGTTGAATTTAT 57.341 34.783 6.56 0.00 30.23 1.40
1731 1844 5.650543 ACATTCGCCTTGGTTGAATTTATC 58.349 37.500 6.56 0.00 30.23 1.75
1768 1881 2.515523 CAATGGGGAGAGCGCAGG 60.516 66.667 11.47 0.00 0.00 4.85
1769 1882 4.496336 AATGGGGAGAGCGCAGGC 62.496 66.667 11.47 0.00 40.37 4.85
1807 1939 2.862674 TTACCCGGCACAGCGATTCC 62.863 60.000 0.00 0.00 0.00 3.01
1863 2110 3.243401 CCGTCCACAGGAAAAAGGAAAAG 60.243 47.826 0.00 0.00 31.38 2.27
1864 2111 3.630312 CGTCCACAGGAAAAAGGAAAAGA 59.370 43.478 0.00 0.00 31.38 2.52
1889 2136 2.722201 GCCTTCCGTCCCGTCAGAT 61.722 63.158 0.00 0.00 0.00 2.90
1890 2137 1.141881 CCTTCCGTCCCGTCAGATG 59.858 63.158 0.00 0.00 0.00 2.90
1900 2147 5.176958 CCGTCCCGTCAGATGTAATTAATTC 59.823 44.000 3.39 0.00 0.00 2.17
1912 2162 9.182642 AGATGTAATTAATTCCCCTTATCCTCA 57.817 33.333 3.39 0.00 0.00 3.86
1954 2213 6.801862 AGCATGCGAAAAATAAAGAACACTAC 59.198 34.615 13.01 0.00 0.00 2.73
1981 2251 7.380602 GGACAAAATCTCTGAACTTGAACATTG 59.619 37.037 0.00 0.00 0.00 2.82
2014 2284 9.396022 AGTATTATCCTGTACTGTTGAAATTGG 57.604 33.333 0.00 0.00 30.35 3.16
2098 2388 2.810650 CACGTAGCACCAGGATAGAAC 58.189 52.381 0.00 0.00 0.00 3.01
2119 2409 1.569479 GAACAGAAGAGGCACGGCAC 61.569 60.000 0.00 0.00 0.00 5.01
2134 2424 1.525077 GCACGGCGATAAATCCCCA 60.525 57.895 16.62 0.00 0.00 4.96
2135 2425 0.889186 GCACGGCGATAAATCCCCAT 60.889 55.000 16.62 0.00 0.00 4.00
2192 2763 7.688578 GCGTTTCTTTTCTGAATCTATGTGTAC 59.311 37.037 0.00 0.00 0.00 2.90
2193 2764 7.893236 CGTTTCTTTTCTGAATCTATGTGTACG 59.107 37.037 0.00 0.00 0.00 3.67
2194 2765 7.827819 TTCTTTTCTGAATCTATGTGTACGG 57.172 36.000 0.00 0.00 0.00 4.02
2195 2766 5.810587 TCTTTTCTGAATCTATGTGTACGGC 59.189 40.000 0.00 0.00 0.00 5.68
2200 2771 0.468585 ATCTATGTGTACGGCCGGGA 60.469 55.000 31.76 14.80 0.00 5.14
2231 2802 4.629523 TGAACGTGGGCCGGGAAC 62.630 66.667 2.18 0.00 42.24 3.62
2232 2803 4.324991 GAACGTGGGCCGGGAACT 62.325 66.667 2.18 0.00 42.24 3.01
2313 3057 1.887707 CTCGGCCCGCCATTACTTC 60.888 63.158 6.52 0.00 35.37 3.01
2314 3058 2.900337 CGGCCCGCCATTACTTCC 60.900 66.667 6.52 0.00 35.37 3.46
2425 3182 1.066114 CGTCTCTTTCGTCTCCGTGC 61.066 60.000 0.00 0.00 35.01 5.34
2485 3249 3.006659 TGTCACGTTTGGCTTTAATGC 57.993 42.857 4.79 4.79 0.00 3.56
2550 3317 2.435059 GCTCCGGCACTCTGGTTC 60.435 66.667 0.00 0.00 39.81 3.62
2576 3865 2.358737 CGTGAACCAGCTCACCCC 60.359 66.667 0.00 0.00 42.34 4.95
2577 3866 2.883828 CGTGAACCAGCTCACCCCT 61.884 63.158 0.00 0.00 42.34 4.79
2578 3867 1.003233 GTGAACCAGCTCACCCCTC 60.003 63.158 0.00 0.00 39.93 4.30
2579 3868 2.266055 GAACCAGCTCACCCCTCG 59.734 66.667 0.00 0.00 0.00 4.63
2580 3869 3.959991 GAACCAGCTCACCCCTCGC 62.960 68.421 0.00 0.00 0.00 5.03
2583 3872 4.154347 CAGCTCACCCCTCGCCTC 62.154 72.222 0.00 0.00 0.00 4.70
2657 4018 3.751518 GTCCACCACAACCAGATTACTT 58.248 45.455 0.00 0.00 0.00 2.24
2660 4021 2.095768 CACCACAACCAGATTACTTGCG 60.096 50.000 0.00 0.00 0.00 4.85
2692 4053 3.713288 TGCTTACGTGCCATGTAGTATC 58.287 45.455 0.00 0.00 0.00 2.24
2693 4054 3.057734 GCTTACGTGCCATGTAGTATCC 58.942 50.000 0.00 0.00 0.00 2.59
2698 4066 2.033675 CGTGCCATGTAGTATCCGTGTA 59.966 50.000 0.00 0.00 0.00 2.90
2736 4104 2.289274 TGGCTAACGTGTGATGTTGTTG 59.711 45.455 0.00 0.00 0.00 3.33
2738 4106 2.546368 GCTAACGTGTGATGTTGTTGGA 59.454 45.455 0.00 0.00 0.00 3.53
2739 4107 3.606153 GCTAACGTGTGATGTTGTTGGAC 60.606 47.826 0.00 0.00 0.00 4.02
2742 4110 1.332816 CGTGTGATGTTGTTGGACGTG 60.333 52.381 0.00 0.00 0.00 4.49
2743 4111 1.668751 GTGTGATGTTGTTGGACGTGT 59.331 47.619 0.00 0.00 0.00 4.49
2744 4112 1.668237 TGTGATGTTGTTGGACGTGTG 59.332 47.619 0.00 0.00 0.00 3.82
2799 4171 4.687464 GGTTCACGATCAACGGGT 57.313 55.556 0.00 0.00 46.47 5.28
2800 4172 2.922779 GGTTCACGATCAACGGGTT 58.077 52.632 0.00 0.00 46.47 4.11
2801 4173 0.794473 GGTTCACGATCAACGGGTTC 59.206 55.000 0.00 0.00 46.47 3.62
2802 4174 1.504359 GTTCACGATCAACGGGTTCA 58.496 50.000 0.00 0.00 46.47 3.18
2803 4175 1.459592 GTTCACGATCAACGGGTTCAG 59.540 52.381 0.00 0.00 46.47 3.02
2804 4176 0.037697 TCACGATCAACGGGTTCAGG 60.038 55.000 0.00 0.00 46.47 3.86
2805 4177 2.706446 TCACGATCAACGGGTTCAGGT 61.706 52.381 0.00 0.00 46.47 4.00
2806 4178 3.401637 TCACGATCAACGGGTTCAGGTA 61.402 50.000 0.00 0.00 46.47 3.08
2807 4179 1.636988 CGATCAACGGGTTCAGGTAC 58.363 55.000 0.00 0.00 38.46 3.34
2808 4180 1.203994 CGATCAACGGGTTCAGGTACT 59.796 52.381 0.00 0.00 37.54 2.73
3061 5157 1.528129 GGCAAGAACTTCAGGGTCTG 58.472 55.000 0.00 0.00 41.89 3.51
3062 5158 1.072331 GGCAAGAACTTCAGGGTCTGA 59.928 52.381 0.00 0.00 41.89 3.27
3065 5161 3.604582 CAAGAACTTCAGGGTCTGATCC 58.395 50.000 0.00 0.00 41.89 3.36
3074 5170 1.218316 GGTCTGATCCCACCGTGAC 59.782 63.158 0.00 0.00 0.00 3.67
3075 5171 1.218316 GTCTGATCCCACCGTGACC 59.782 63.158 0.00 0.00 0.00 4.02
3076 5172 1.078528 TCTGATCCCACCGTGACCT 59.921 57.895 0.00 0.00 0.00 3.85
3077 5173 0.544357 TCTGATCCCACCGTGACCTT 60.544 55.000 0.00 0.00 0.00 3.50
3078 5174 0.108138 CTGATCCCACCGTGACCTTC 60.108 60.000 0.00 0.00 0.00 3.46
3084 5180 1.003718 CACCGTGACCTTCCCTTCC 60.004 63.158 0.00 0.00 0.00 3.46
3085 5181 1.152096 ACCGTGACCTTCCCTTCCT 60.152 57.895 0.00 0.00 0.00 3.36
3097 5193 2.052690 CCTTCCTCTTCTCCGGCGA 61.053 63.158 9.30 0.00 0.00 5.54
3124 5220 4.424711 GCATGGGCGGGAGGTTCA 62.425 66.667 0.00 0.00 0.00 3.18
3138 5234 6.039047 GCGGGAGGTTCATCGTCTTATATATA 59.961 42.308 0.00 0.00 0.00 0.86
3141 5237 9.583765 GGGAGGTTCATCGTCTTATATATAAAC 57.416 37.037 6.63 7.04 0.00 2.01
3142 5238 9.286946 GGAGGTTCATCGTCTTATATATAAACG 57.713 37.037 21.44 21.44 34.80 3.60
3168 5264 8.560124 AGTACTACTACTACATACTAGTGGGT 57.440 38.462 5.39 6.07 30.81 4.51
3190 5286 5.163683 GGTGAGTAATTACTACAGTGAGCGA 60.164 44.000 18.03 0.00 36.50 4.93
3192 5288 5.646793 TGAGTAATTACTACAGTGAGCGAGT 59.353 40.000 18.03 0.00 36.50 4.18
3196 5292 0.523966 ACTACAGTGAGCGAGTGAGC 59.476 55.000 0.00 0.00 37.41 4.26
3218 5314 3.507786 GGTCTGTGTTGGTGTGTTTTTC 58.492 45.455 0.00 0.00 0.00 2.29
3223 5319 1.473278 TGTTGGTGTGTTTTTCCCGTC 59.527 47.619 0.00 0.00 0.00 4.79
3248 5344 2.703798 GCGTGGCCTGTGAATGCAT 61.704 57.895 3.32 0.00 0.00 3.96
3426 5541 2.811317 GCTGCTTCTCCGGTGTCG 60.811 66.667 0.00 0.00 0.00 4.35
3429 5544 2.126031 GCTTCTCCGGTGTCGTCC 60.126 66.667 0.00 0.00 33.95 4.79
3430 5545 2.572284 CTTCTCCGGTGTCGTCCC 59.428 66.667 0.00 0.00 33.95 4.46
3519 5639 6.173427 TCGATCAATCATGGACCTGATTTA 57.827 37.500 13.41 8.73 41.89 1.40
3523 5643 8.610035 CGATCAATCATGGACCTGATTTATATG 58.390 37.037 13.41 6.42 41.89 1.78
3527 5647 9.948964 CAATCATGGACCTGATTTATATGTCTA 57.051 33.333 13.41 0.00 41.89 2.59
3547 5667 7.609960 TGTCTATCTATCAGCTTGATGATTCC 58.390 38.462 6.69 3.91 40.40 3.01
3548 5668 7.041107 GTCTATCTATCAGCTTGATGATTCCC 58.959 42.308 6.69 0.00 40.40 3.97
3549 5669 6.958778 TCTATCTATCAGCTTGATGATTCCCT 59.041 38.462 6.69 0.00 40.40 4.20
3552 5672 7.565190 TCTATCAGCTTGATGATTCCCTAAT 57.435 36.000 6.69 0.00 40.40 1.73
3553 5673 7.392418 TCTATCAGCTTGATGATTCCCTAATG 58.608 38.462 6.69 0.00 40.40 1.90
3557 5677 3.305199 GCTTGATGATTCCCTAATGCTGC 60.305 47.826 0.00 0.00 0.00 5.25
3560 5680 3.070878 TGATGATTCCCTAATGCTGCGTA 59.929 43.478 0.00 0.00 0.00 4.42
3561 5681 3.769739 TGATTCCCTAATGCTGCGTAT 57.230 42.857 0.00 0.00 0.00 3.06
3562 5682 3.402110 TGATTCCCTAATGCTGCGTATG 58.598 45.455 0.00 0.00 0.00 2.39
3565 5685 0.588252 CCCTAATGCTGCGTATGTGC 59.412 55.000 0.00 0.00 0.00 4.57
3566 5686 1.298602 CCTAATGCTGCGTATGTGCA 58.701 50.000 0.00 7.10 43.95 4.57
3569 5689 0.448990 AATGCTGCGTATGTGCACTG 59.551 50.000 19.41 6.50 40.62 3.66
3570 5690 1.371337 ATGCTGCGTATGTGCACTGG 61.371 55.000 19.41 5.57 40.62 4.00
3571 5691 2.787249 CTGCGTATGTGCACTGGC 59.213 61.111 19.41 15.43 40.62 4.85
3572 5692 2.745884 TGCGTATGTGCACTGGCC 60.746 61.111 19.41 0.00 40.62 5.36
3573 5693 3.508840 GCGTATGTGCACTGGCCC 61.509 66.667 19.41 0.00 40.13 5.80
3574 5694 2.824041 CGTATGTGCACTGGCCCC 60.824 66.667 19.41 0.00 40.13 5.80
3575 5695 2.677228 GTATGTGCACTGGCCCCT 59.323 61.111 19.41 0.00 40.13 4.79
3577 5697 1.616327 TATGTGCACTGGCCCCTCT 60.616 57.895 19.41 0.00 40.13 3.69
3579 5699 3.325753 GTGCACTGGCCCCTCTCT 61.326 66.667 10.32 0.00 40.13 3.10
3580 5700 3.005539 TGCACTGGCCCCTCTCTC 61.006 66.667 0.00 0.00 40.13 3.20
3581 5701 2.686835 GCACTGGCCCCTCTCTCT 60.687 66.667 0.00 0.00 0.00 3.10
3583 5703 1.001503 CACTGGCCCCTCTCTCTCT 59.998 63.158 0.00 0.00 0.00 3.10
3584 5704 1.042559 CACTGGCCCCTCTCTCTCTC 61.043 65.000 0.00 0.00 0.00 3.20
3585 5705 1.221213 ACTGGCCCCTCTCTCTCTCT 61.221 60.000 0.00 0.00 0.00 3.10
3588 5708 1.146774 TGGCCCCTCTCTCTCTCTATG 59.853 57.143 0.00 0.00 0.00 2.23
3589 5709 1.146982 GGCCCCTCTCTCTCTCTATGT 59.853 57.143 0.00 0.00 0.00 2.29
3591 5711 2.238521 CCCCTCTCTCTCTCTATGTGC 58.761 57.143 0.00 0.00 0.00 4.57
3592 5712 2.158475 CCCCTCTCTCTCTCTATGTGCT 60.158 54.545 0.00 0.00 0.00 4.40
3593 5713 3.565307 CCCTCTCTCTCTCTATGTGCTT 58.435 50.000 0.00 0.00 0.00 3.91
3594 5714 3.318839 CCCTCTCTCTCTCTATGTGCTTG 59.681 52.174 0.00 0.00 0.00 4.01
3598 5718 5.501156 TCTCTCTCTCTATGTGCTTGTGTA 58.499 41.667 0.00 0.00 0.00 2.90
3604 5724 5.178061 TCTCTATGTGCTTGTGTATGTTGG 58.822 41.667 0.00 0.00 0.00 3.77
3611 5731 3.823873 TGCTTGTGTATGTTGGGTTAAGG 59.176 43.478 0.00 0.00 0.00 2.69
3616 5736 6.827586 TGTGTATGTTGGGTTAAGGAAATC 57.172 37.500 0.00 0.00 0.00 2.17
3617 5737 5.712917 TGTGTATGTTGGGTTAAGGAAATCC 59.287 40.000 0.00 0.00 39.04 3.01
3619 5739 3.512219 TGTTGGGTTAAGGAAATCCGT 57.488 42.857 0.00 0.00 41.85 4.69
3623 5743 2.207590 GGGTTAAGGAAATCCGTAGCG 58.792 52.381 3.90 0.00 42.08 4.26
3664 5784 2.045536 CCCTGCCTGTTGGAGAGC 60.046 66.667 0.00 0.00 34.57 4.09
3668 5788 3.123620 GCCTGTTGGAGAGCGCAG 61.124 66.667 11.47 0.00 34.57 5.18
3682 5802 1.445066 CGCAGACGCTGAGTGTGAT 60.445 57.895 12.62 0.00 45.98 3.06
3683 5803 1.681025 CGCAGACGCTGAGTGTGATG 61.681 60.000 12.62 3.41 45.98 3.07
3727 5847 0.248565 ATGCAGAGCAGAGAAGCGAA 59.751 50.000 0.00 0.00 43.65 4.70
3746 5866 4.043200 GCGCGAGGGCTTGCTTTT 62.043 61.111 12.10 0.00 37.83 2.27
3749 5869 2.924105 GCGAGGGCTTGCTTTTGCT 61.924 57.895 0.00 0.00 40.54 3.91
3750 5870 2.809266 GCGAGGGCTTGCTTTTGCTC 62.809 60.000 0.00 0.00 40.54 4.26
3759 5879 4.776953 CTTTTGCTCGGACGCGCG 62.777 66.667 30.96 30.96 0.00 6.86
3780 5907 2.435938 GAATGGCGCCAAGGACGA 60.436 61.111 36.33 8.35 0.00 4.20
3797 5933 2.124570 AGCCACCGACCATGCATC 60.125 61.111 0.00 0.00 0.00 3.91
3798 5934 2.438254 GCCACCGACCATGCATCA 60.438 61.111 0.00 0.00 0.00 3.07
3799 5935 1.825191 GCCACCGACCATGCATCAT 60.825 57.895 0.00 0.00 0.00 2.45
3811 5947 3.489059 CCATGCATCATACCGTTTTCACC 60.489 47.826 0.00 0.00 0.00 4.02
3815 5951 4.334203 TGCATCATACCGTTTTCACCATAC 59.666 41.667 0.00 0.00 0.00 2.39
3867 6010 0.320374 CCTTGCCGTTACCTGTCTGA 59.680 55.000 0.00 0.00 0.00 3.27
3871 6014 0.108756 GCCGTTACCTGTCTGACCTC 60.109 60.000 5.17 0.00 0.00 3.85
3873 6016 1.825474 CCGTTACCTGTCTGACCTCAT 59.175 52.381 5.17 0.00 0.00 2.90
3879 6022 1.403679 CCTGTCTGACCTCATCTCGTC 59.596 57.143 5.17 0.00 0.00 4.20
3887 6030 2.748647 TCATCTCGTCGCCGTCCA 60.749 61.111 0.00 0.00 35.01 4.02
3927 6075 0.737715 AGCGAGTTTGCAGATCGTCC 60.738 55.000 15.65 3.93 38.66 4.79
3930 6078 1.795768 GAGTTTGCAGATCGTCCACA 58.204 50.000 0.00 0.00 0.00 4.17
3931 6079 2.350522 GAGTTTGCAGATCGTCCACAT 58.649 47.619 0.00 0.00 0.00 3.21
3932 6080 2.349886 GAGTTTGCAGATCGTCCACATC 59.650 50.000 0.00 0.00 0.00 3.06
3934 6082 0.460109 TTGCAGATCGTCCACATCGG 60.460 55.000 0.00 0.00 0.00 4.18
3935 6083 1.592669 GCAGATCGTCCACATCGGG 60.593 63.158 0.00 0.00 34.36 5.14
3936 6084 1.816537 CAGATCGTCCACATCGGGT 59.183 57.895 0.00 0.00 34.36 5.28
3937 6085 0.249073 CAGATCGTCCACATCGGGTC 60.249 60.000 0.00 0.00 34.36 4.46
3938 6086 1.067582 GATCGTCCACATCGGGTCC 59.932 63.158 0.00 0.00 34.36 4.46
3952 6100 1.670791 GGGTCCGAGTCAAACAAACA 58.329 50.000 0.00 0.00 0.00 2.83
4026 6181 3.164977 TGTGCCCCCTTCGTGTCA 61.165 61.111 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.451135 GTTCATTGAGTCGTGCGTGC 60.451 55.000 0.00 0.00 0.00 5.34
5 6 0.859232 GTGTTCATTGAGTCGTGCGT 59.141 50.000 0.00 0.00 0.00 5.24
6 7 0.858583 TGTGTTCATTGAGTCGTGCG 59.141 50.000 0.00 0.00 0.00 5.34
7 8 1.398960 GCTGTGTTCATTGAGTCGTGC 60.399 52.381 0.00 0.00 0.00 5.34
8 9 1.195448 GGCTGTGTTCATTGAGTCGTG 59.805 52.381 0.00 0.00 0.00 4.35
9 10 1.512926 GGCTGTGTTCATTGAGTCGT 58.487 50.000 0.00 0.00 0.00 4.34
10 11 0.439985 CGGCTGTGTTCATTGAGTCG 59.560 55.000 0.00 0.00 0.00 4.18
11 12 0.798776 CCGGCTGTGTTCATTGAGTC 59.201 55.000 0.00 0.00 0.00 3.36
12 13 0.396435 TCCGGCTGTGTTCATTGAGT 59.604 50.000 0.00 0.00 0.00 3.41
13 14 0.798776 GTCCGGCTGTGTTCATTGAG 59.201 55.000 0.00 0.00 0.00 3.02
14 15 0.107643 TGTCCGGCTGTGTTCATTGA 59.892 50.000 0.00 0.00 0.00 2.57
15 16 0.238289 GTGTCCGGCTGTGTTCATTG 59.762 55.000 0.00 0.00 0.00 2.82
16 17 1.227999 CGTGTCCGGCTGTGTTCATT 61.228 55.000 0.00 0.00 0.00 2.57
17 18 1.667830 CGTGTCCGGCTGTGTTCAT 60.668 57.895 0.00 0.00 0.00 2.57
18 19 2.279851 CGTGTCCGGCTGTGTTCA 60.280 61.111 0.00 0.00 0.00 3.18
30 31 0.179094 TTGATGGATACGCCCGTGTC 60.179 55.000 8.75 8.75 42.51 3.67
31 32 0.461339 GTTGATGGATACGCCCGTGT 60.461 55.000 3.22 0.00 42.51 4.49
32 33 1.487452 CGTTGATGGATACGCCCGTG 61.487 60.000 3.22 0.00 42.51 4.94
33 34 1.227147 CGTTGATGGATACGCCCGT 60.227 57.895 0.00 0.00 42.51 5.28
34 35 3.625232 CGTTGATGGATACGCCCG 58.375 61.111 0.00 0.00 42.51 6.13
38 39 0.462937 TTGGGGCGTTGATGGATACG 60.463 55.000 0.00 0.00 40.55 3.06
39 40 1.676006 CTTTGGGGCGTTGATGGATAC 59.324 52.381 0.00 0.00 0.00 2.24
40 41 1.409521 CCTTTGGGGCGTTGATGGATA 60.410 52.381 0.00 0.00 0.00 2.59
41 42 0.684153 CCTTTGGGGCGTTGATGGAT 60.684 55.000 0.00 0.00 0.00 3.41
42 43 1.304052 CCTTTGGGGCGTTGATGGA 60.304 57.895 0.00 0.00 0.00 3.41
43 44 0.897863 TTCCTTTGGGGCGTTGATGG 60.898 55.000 0.00 0.00 34.39 3.51
44 45 0.243636 GTTCCTTTGGGGCGTTGATG 59.756 55.000 0.00 0.00 34.39 3.07
45 46 0.178975 TGTTCCTTTGGGGCGTTGAT 60.179 50.000 0.00 0.00 34.39 2.57
46 47 0.395862 TTGTTCCTTTGGGGCGTTGA 60.396 50.000 0.00 0.00 34.39 3.18
47 48 0.461961 TTTGTTCCTTTGGGGCGTTG 59.538 50.000 0.00 0.00 34.39 4.10
48 49 1.196012 TTTTGTTCCTTTGGGGCGTT 58.804 45.000 0.00 0.00 34.39 4.84
49 50 1.343142 GATTTTGTTCCTTTGGGGCGT 59.657 47.619 0.00 0.00 34.39 5.68
50 51 1.337728 GGATTTTGTTCCTTTGGGGCG 60.338 52.381 0.00 0.00 32.68 6.13
51 52 1.696884 TGGATTTTGTTCCTTTGGGGC 59.303 47.619 0.00 0.00 36.68 5.80
52 53 2.972021 ACTGGATTTTGTTCCTTTGGGG 59.028 45.455 0.00 0.00 36.68 4.96
53 54 3.640967 TGACTGGATTTTGTTCCTTTGGG 59.359 43.478 0.00 0.00 36.68 4.12
54 55 4.935352 TGACTGGATTTTGTTCCTTTGG 57.065 40.909 0.00 0.00 36.68 3.28
55 56 5.928264 GGATTGACTGGATTTTGTTCCTTTG 59.072 40.000 0.00 0.00 36.68 2.77
56 57 5.278957 CGGATTGACTGGATTTTGTTCCTTT 60.279 40.000 0.00 0.00 36.68 3.11
57 58 4.218417 CGGATTGACTGGATTTTGTTCCTT 59.782 41.667 0.00 0.00 36.68 3.36
58 59 3.758554 CGGATTGACTGGATTTTGTTCCT 59.241 43.478 0.00 0.00 36.68 3.36
59 60 4.096732 CGGATTGACTGGATTTTGTTCC 57.903 45.455 0.00 0.00 36.24 3.62
69 70 0.458543 CAGACGTCCGGATTGACTGG 60.459 60.000 22.31 10.48 45.93 4.00
70 71 0.243907 ACAGACGTCCGGATTGACTG 59.756 55.000 25.75 25.75 32.97 3.51
71 72 0.966920 AACAGACGTCCGGATTGACT 59.033 50.000 13.01 6.63 32.97 3.41
72 73 1.459592 CAAACAGACGTCCGGATTGAC 59.540 52.381 13.01 4.05 0.00 3.18
73 74 1.606994 CCAAACAGACGTCCGGATTGA 60.607 52.381 21.56 0.00 0.00 2.57
74 75 0.796312 CCAAACAGACGTCCGGATTG 59.204 55.000 13.01 15.03 0.00 2.67
75 76 0.321298 CCCAAACAGACGTCCGGATT 60.321 55.000 13.01 3.16 0.00 3.01
76 77 1.295423 CCCAAACAGACGTCCGGAT 59.705 57.895 13.01 0.00 0.00 4.18
77 78 2.738480 CCCAAACAGACGTCCGGA 59.262 61.111 13.01 0.00 0.00 5.14
78 79 2.358247 CCCCAAACAGACGTCCGG 60.358 66.667 13.01 7.67 0.00 5.14
79 80 1.666872 GACCCCAAACAGACGTCCG 60.667 63.158 13.01 4.15 0.00 4.79
80 81 1.666872 CGACCCCAAACAGACGTCC 60.667 63.158 13.01 0.00 0.00 4.79
81 82 1.068585 ACGACCCCAAACAGACGTC 59.931 57.895 7.70 7.70 0.00 4.34
82 83 1.227438 CACGACCCCAAACAGACGT 60.227 57.895 0.00 0.00 34.40 4.34
83 84 2.604174 GCACGACCCCAAACAGACG 61.604 63.158 0.00 0.00 0.00 4.18
84 85 2.604174 CGCACGACCCCAAACAGAC 61.604 63.158 0.00 0.00 0.00 3.51
85 86 2.107041 ATCGCACGACCCCAAACAGA 62.107 55.000 0.00 0.00 0.00 3.41
86 87 1.671054 ATCGCACGACCCCAAACAG 60.671 57.895 0.00 0.00 0.00 3.16
87 88 1.963855 CATCGCACGACCCCAAACA 60.964 57.895 0.00 0.00 0.00 2.83
88 89 2.686816 CCATCGCACGACCCCAAAC 61.687 63.158 0.00 0.00 0.00 2.93
89 90 2.359354 CCATCGCACGACCCCAAA 60.359 61.111 0.00 0.00 0.00 3.28
90 91 3.309436 CTCCATCGCACGACCCCAA 62.309 63.158 0.00 0.00 0.00 4.12
91 92 3.770040 CTCCATCGCACGACCCCA 61.770 66.667 0.00 0.00 0.00 4.96
92 93 3.310860 AACTCCATCGCACGACCCC 62.311 63.158 0.00 0.00 0.00 4.95
93 94 2.100631 CAACTCCATCGCACGACCC 61.101 63.158 0.00 0.00 0.00 4.46
94 95 2.100631 CCAACTCCATCGCACGACC 61.101 63.158 0.00 0.00 0.00 4.79
95 96 2.740714 GCCAACTCCATCGCACGAC 61.741 63.158 0.00 0.00 0.00 4.34
96 97 2.434185 GCCAACTCCATCGCACGA 60.434 61.111 0.00 0.00 0.00 4.35
97 98 3.499737 GGCCAACTCCATCGCACG 61.500 66.667 0.00 0.00 0.00 5.34
98 99 2.045926 AGGCCAACTCCATCGCAC 60.046 61.111 5.01 0.00 0.00 5.34
99 100 2.046023 CAGGCCAACTCCATCGCA 60.046 61.111 5.01 0.00 0.00 5.10
100 101 1.817099 CTCAGGCCAACTCCATCGC 60.817 63.158 5.01 0.00 0.00 4.58
101 102 0.179089 CTCTCAGGCCAACTCCATCG 60.179 60.000 5.01 0.00 0.00 3.84
102 103 1.138661 CTCTCTCAGGCCAACTCCATC 59.861 57.143 5.01 0.00 0.00 3.51
103 104 1.202330 CTCTCTCAGGCCAACTCCAT 58.798 55.000 5.01 0.00 0.00 3.41
104 105 0.115152 TCTCTCTCAGGCCAACTCCA 59.885 55.000 5.01 0.00 0.00 3.86
105 106 1.494960 ATCTCTCTCAGGCCAACTCC 58.505 55.000 5.01 0.00 0.00 3.85
106 107 3.057596 CGATATCTCTCTCAGGCCAACTC 60.058 52.174 5.01 0.00 0.00 3.01
107 108 2.890311 CGATATCTCTCTCAGGCCAACT 59.110 50.000 5.01 0.00 0.00 3.16
108 109 2.625790 ACGATATCTCTCTCAGGCCAAC 59.374 50.000 5.01 0.00 0.00 3.77
109 110 2.887783 GACGATATCTCTCTCAGGCCAA 59.112 50.000 5.01 0.00 0.00 4.52
110 111 2.509569 GACGATATCTCTCTCAGGCCA 58.490 52.381 5.01 0.00 0.00 5.36
111 112 1.466950 CGACGATATCTCTCTCAGGCC 59.533 57.143 0.00 0.00 0.00 5.19
112 113 2.147958 ACGACGATATCTCTCTCAGGC 58.852 52.381 0.00 0.00 0.00 4.85
113 114 5.416083 AGATACGACGATATCTCTCTCAGG 58.584 45.833 0.00 0.00 37.33 3.86
187 188 2.187424 CCAGGAGCAGAGCAGAGC 59.813 66.667 0.00 0.00 0.00 4.09
188 189 2.187424 GCCAGGAGCAGAGCAGAG 59.813 66.667 0.00 0.00 42.97 3.35
189 190 3.397439 GGCCAGGAGCAGAGCAGA 61.397 66.667 0.00 0.00 46.50 4.26
190 191 4.486503 GGGCCAGGAGCAGAGCAG 62.487 72.222 4.39 0.00 46.50 4.24
195 196 4.479993 CTTCCGGGCCAGGAGCAG 62.480 72.222 24.37 16.33 46.50 4.24
204 205 1.303309 CATGATTCTGTCTTCCGGGC 58.697 55.000 0.00 0.00 0.00 6.13
212 213 1.466856 TTGCCAGCCATGATTCTGTC 58.533 50.000 0.00 0.00 0.00 3.51
237 238 4.448060 GCGGTAAATGTTGGATCTACTAGC 59.552 45.833 0.00 0.00 0.00 3.42
266 267 4.916983 AACATTGAAGCACTGCTGTAAA 57.083 36.364 3.73 0.14 39.62 2.01
274 275 4.523943 TGCAGGAAATAACATTGAAGCACT 59.476 37.500 0.00 0.00 0.00 4.40
277 278 4.328169 GCTTGCAGGAAATAACATTGAAGC 59.672 41.667 0.00 0.00 0.00 3.86
280 281 4.082081 CCTGCTTGCAGGAAATAACATTGA 60.082 41.667 31.48 0.00 45.00 2.57
281 282 4.178540 CCTGCTTGCAGGAAATAACATTG 58.821 43.478 31.48 4.53 45.00 2.82
282 283 3.834231 ACCTGCTTGCAGGAAATAACATT 59.166 39.130 38.49 16.87 45.00 2.71
283 284 3.434309 ACCTGCTTGCAGGAAATAACAT 58.566 40.909 38.49 17.51 45.00 2.71
284 285 2.819608 GACCTGCTTGCAGGAAATAACA 59.180 45.455 38.49 0.00 45.00 2.41
285 286 2.164422 GGACCTGCTTGCAGGAAATAAC 59.836 50.000 38.49 22.91 45.00 1.89
287 288 1.678728 CGGACCTGCTTGCAGGAAATA 60.679 52.381 38.49 0.00 45.00 1.40
288 289 0.962356 CGGACCTGCTTGCAGGAAAT 60.962 55.000 38.49 22.30 45.00 2.17
291 292 4.704833 GCGGACCTGCTTGCAGGA 62.705 66.667 38.49 3.18 45.00 3.86
303 321 3.643159 AGAAAAAGACCAATTGCGGAC 57.357 42.857 0.00 0.00 0.00 4.79
305 323 5.567138 ATCTAGAAAAAGACCAATTGCGG 57.433 39.130 0.00 0.00 0.00 5.69
306 324 5.801947 CCAATCTAGAAAAAGACCAATTGCG 59.198 40.000 0.00 0.00 0.00 4.85
314 332 4.025647 CGCGATCCCAATCTAGAAAAAGAC 60.026 45.833 0.00 0.00 0.00 3.01
319 337 1.070134 CCCGCGATCCCAATCTAGAAA 59.930 52.381 8.23 0.00 0.00 2.52
337 355 3.850098 ATCCGGGCGCATGATTCCC 62.850 63.158 10.83 1.75 36.68 3.97
339 357 0.385390 AAAATCCGGGCGCATGATTC 59.615 50.000 10.83 0.00 0.00 2.52
340 358 0.102844 CAAAATCCGGGCGCATGATT 59.897 50.000 10.83 11.04 0.00 2.57
352 370 6.030228 GCTGCATTCAAGTAGTACAAAATCC 58.970 40.000 2.52 0.00 0.00 3.01
357 375 6.573664 ATTTGCTGCATTCAAGTAGTACAA 57.426 33.333 1.84 0.00 0.00 2.41
360 378 7.254761 CGGATTATTTGCTGCATTCAAGTAGTA 60.255 37.037 1.84 0.00 0.00 1.82
361 379 6.458751 CGGATTATTTGCTGCATTCAAGTAGT 60.459 38.462 1.84 0.00 0.00 2.73
362 380 5.911280 CGGATTATTTGCTGCATTCAAGTAG 59.089 40.000 1.84 0.00 0.00 2.57
409 427 5.410355 ACAATGCTTAATGATTTGCTGGT 57.590 34.783 4.91 0.00 0.00 4.00
419 437 8.551205 CACCAGTATGTAGTACAATGCTTAATG 58.449 37.037 7.16 4.43 35.67 1.90
423 441 6.294361 TCACCAGTATGTAGTACAATGCTT 57.706 37.500 7.16 0.00 35.67 3.91
424 442 5.932619 TCACCAGTATGTAGTACAATGCT 57.067 39.130 7.16 3.19 35.67 3.79
502 520 1.282875 GGCACTGTTTGGACTTCGC 59.717 57.895 0.00 0.00 0.00 4.70
508 526 2.355716 GCTATACCTGGCACTGTTTGGA 60.356 50.000 0.00 0.00 0.00 3.53
526 544 2.716203 CCTCCCTCCCTCCCTGCTA 61.716 68.421 0.00 0.00 0.00 3.49
527 545 4.101077 CCTCCCTCCCTCCCTGCT 62.101 72.222 0.00 0.00 0.00 4.24
528 546 3.642741 TTCCTCCCTCCCTCCCTGC 62.643 68.421 0.00 0.00 0.00 4.85
529 547 1.383803 CTTCCTCCCTCCCTCCCTG 60.384 68.421 0.00 0.00 0.00 4.45
546 566 3.149981 CCTCGCCCTTTTTCTTTCTTCT 58.850 45.455 0.00 0.00 0.00 2.85
563 583 1.004918 GTGGACAGTTGGGACCTCG 60.005 63.158 0.00 0.00 0.00 4.63
583 603 1.427020 GTGCTCTGATGGAAAGCGC 59.573 57.895 0.00 0.00 38.90 5.92
608 628 3.175240 CTGCCGCTTCGTCTCGTG 61.175 66.667 0.00 0.00 0.00 4.35
611 631 3.482783 GTGCTGCCGCTTCGTCTC 61.483 66.667 0.70 0.00 36.97 3.36
621 641 4.626081 ACCTGTCACCGTGCTGCC 62.626 66.667 0.00 0.00 0.00 4.85
622 642 3.349006 CACCTGTCACCGTGCTGC 61.349 66.667 0.00 0.00 0.00 5.25
623 643 1.956170 GTCACCTGTCACCGTGCTG 60.956 63.158 0.00 0.00 0.00 4.41
624 644 2.369257 CTGTCACCTGTCACCGTGCT 62.369 60.000 0.00 0.00 0.00 4.40
625 645 1.956170 CTGTCACCTGTCACCGTGC 60.956 63.158 0.00 0.00 0.00 5.34
626 646 0.875908 CACTGTCACCTGTCACCGTG 60.876 60.000 0.00 0.00 0.00 4.94
627 647 1.441729 CACTGTCACCTGTCACCGT 59.558 57.895 0.00 0.00 0.00 4.83
628 648 1.300931 CCACTGTCACCTGTCACCG 60.301 63.158 0.00 0.00 0.00 4.94
629 649 1.598130 GCCACTGTCACCTGTCACC 60.598 63.158 0.00 0.00 0.00 4.02
630 650 1.598130 GGCCACTGTCACCTGTCAC 60.598 63.158 0.00 0.00 0.00 3.67
631 651 2.828868 GGCCACTGTCACCTGTCA 59.171 61.111 0.00 0.00 0.00 3.58
632 652 2.357517 CGGCCACTGTCACCTGTC 60.358 66.667 2.24 0.00 0.00 3.51
633 653 3.941188 CCGGCCACTGTCACCTGT 61.941 66.667 2.24 0.00 0.00 4.00
683 703 1.450905 GTTACGGAGCGCGTGATTATC 59.549 52.381 8.43 0.00 0.00 1.75
708 730 4.174129 CGGAAATTGGACGGGCGC 62.174 66.667 0.00 0.00 0.00 6.53
746 772 3.778070 GCGAAGAAAAGAAGATGTACGCG 60.778 47.826 3.53 3.53 33.84 6.01
843 899 2.224793 GGGGTATTTATGGAGGAGGCAC 60.225 54.545 0.00 0.00 0.00 5.01
944 1005 2.331132 GGTGAGCAGAGCAAGTGGC 61.331 63.158 0.00 0.00 45.30 5.01
945 1006 2.031516 CGGTGAGCAGAGCAAGTGG 61.032 63.158 0.00 0.00 0.00 4.00
946 1007 3.559024 CGGTGAGCAGAGCAAGTG 58.441 61.111 0.00 0.00 0.00 3.16
1187 1261 1.065199 ACATCATGGTGGAATCGCACT 60.065 47.619 11.45 0.00 0.00 4.40
1209 1283 4.034350 CGAGATCAGATCAGTTCGACTTG 58.966 47.826 13.14 0.00 0.00 3.16
1354 1452 1.880340 GCACCGGATCTCGAAGCAG 60.880 63.158 9.46 0.00 42.43 4.24
1374 1472 3.260100 CCCACCCAGGCTGGTTCT 61.260 66.667 30.68 11.09 36.12 3.01
1619 1728 0.825410 TAGGCAAGCGACGGGATAAA 59.175 50.000 0.00 0.00 0.00 1.40
1620 1729 0.387929 CTAGGCAAGCGACGGGATAA 59.612 55.000 0.00 0.00 0.00 1.75
1651 1760 3.760684 AGAAACAGCATCCCATTGACTTC 59.239 43.478 0.00 0.00 0.00 3.01
1674 1787 7.688343 ACTGTACTATACTAGGAGTATGACCC 58.312 42.308 9.00 0.00 41.23 4.46
1726 1839 6.201997 GGCCGCAAAAGAAAAGAAAAGATAAA 59.798 34.615 0.00 0.00 0.00 1.40
1727 1840 5.694458 GGCCGCAAAAGAAAAGAAAAGATAA 59.306 36.000 0.00 0.00 0.00 1.75
1728 1841 5.221342 TGGCCGCAAAAGAAAAGAAAAGATA 60.221 36.000 0.00 0.00 0.00 1.98
1729 1842 4.058124 GGCCGCAAAAGAAAAGAAAAGAT 58.942 39.130 0.00 0.00 0.00 2.40
1730 1843 3.118956 TGGCCGCAAAAGAAAAGAAAAGA 60.119 39.130 0.00 0.00 0.00 2.52
1731 1844 3.194062 TGGCCGCAAAAGAAAAGAAAAG 58.806 40.909 0.00 0.00 0.00 2.27
1776 1889 4.851179 GGGTAAAGAGGGGCGCGG 62.851 72.222 8.83 0.00 0.00 6.46
1807 1939 3.247648 TCTCAAAAGACGCGAAGGAAAAG 59.752 43.478 15.93 2.54 0.00 2.27
1863 2110 1.095600 GGGACGGAAGGCAGATTTTC 58.904 55.000 0.00 0.00 45.40 2.29
1864 2111 3.266240 GGGACGGAAGGCAGATTTT 57.734 52.632 0.00 0.00 45.40 1.82
1889 2136 7.523415 GGTGAGGATAAGGGGAATTAATTACA 58.477 38.462 12.50 0.00 0.00 2.41
1890 2137 6.653740 CGGTGAGGATAAGGGGAATTAATTAC 59.346 42.308 1.35 1.35 0.00 1.89
1900 2147 1.200519 TTGACGGTGAGGATAAGGGG 58.799 55.000 0.00 0.00 0.00 4.79
1912 2162 1.156736 GCTACTGTGCAATTGACGGT 58.843 50.000 19.52 19.52 36.82 4.83
1954 2213 5.007626 TGTTCAAGTTCAGAGATTTTGTCCG 59.992 40.000 0.00 0.00 0.00 4.79
1981 2251 5.057149 CAGTACAGGATAATACTTGCCCAC 58.943 45.833 0.00 0.00 28.91 4.61
2014 2284 0.107848 AGCAGCCCATGTTACCGTAC 60.108 55.000 0.00 0.00 0.00 3.67
2098 2388 1.294659 GCCGTGCCTCTTCTGTTCTG 61.295 60.000 0.00 0.00 0.00 3.02
2130 2420 2.938956 AGGAGCGAGATTTAATGGGG 57.061 50.000 0.00 0.00 0.00 4.96
2134 2424 4.762289 ACTGGAAGGAGCGAGATTTAAT 57.238 40.909 0.00 0.00 39.30 1.40
2135 2425 5.263968 CTACTGGAAGGAGCGAGATTTAA 57.736 43.478 0.00 0.00 38.67 1.52
2161 2451 9.302345 CATAGATTCAGAAAAGAAACGCTACTA 57.698 33.333 0.00 0.00 0.00 1.82
2163 2453 7.900352 CACATAGATTCAGAAAAGAAACGCTAC 59.100 37.037 0.00 0.00 0.00 3.58
2168 2461 8.169268 CCGTACACATAGATTCAGAAAAGAAAC 58.831 37.037 0.00 0.00 0.00 2.78
2193 2764 4.250170 TATCCCTCCCTCCCGGCC 62.250 72.222 0.00 0.00 0.00 6.13
2194 2765 2.604991 CTATCCCTCCCTCCCGGC 60.605 72.222 0.00 0.00 0.00 6.13
2195 2766 2.604991 GCTATCCCTCCCTCCCGG 60.605 72.222 0.00 0.00 0.00 5.73
2200 2771 1.392710 CGTTCACGCTATCCCTCCCT 61.393 60.000 0.00 0.00 0.00 4.20
2263 2834 2.632228 GTGTCACGTTCCGCTTTTAAC 58.368 47.619 0.00 0.00 0.00 2.01
2313 3057 0.313043 ACTCGTACCACGACACAAGG 59.687 55.000 0.00 0.00 46.73 3.61
2314 3058 2.975410 TACTCGTACCACGACACAAG 57.025 50.000 0.00 0.00 46.73 3.16
2425 3182 2.179018 CATTGACGCCCGCTTTGG 59.821 61.111 0.00 0.00 37.55 3.28
2485 3249 2.607187 CAGACACCAACTACGCCTAAG 58.393 52.381 0.00 0.00 0.00 2.18
2630 3975 3.660111 GTTGTGGTGGACGCAGGC 61.660 66.667 0.00 0.00 41.30 4.85
2633 3978 2.050836 ATCTGGTTGTGGTGGACGCA 62.051 55.000 0.00 0.00 37.93 5.24
2634 3979 0.889186 AATCTGGTTGTGGTGGACGC 60.889 55.000 0.00 0.00 0.00 5.19
2635 3980 2.073816 GTAATCTGGTTGTGGTGGACG 58.926 52.381 0.00 0.00 0.00 4.79
2636 3981 3.418684 AGTAATCTGGTTGTGGTGGAC 57.581 47.619 0.00 0.00 0.00 4.02
2637 3982 3.750371 CAAGTAATCTGGTTGTGGTGGA 58.250 45.455 0.00 0.00 0.00 4.02
2640 3997 2.151202 CGCAAGTAATCTGGTTGTGGT 58.849 47.619 0.00 0.00 0.00 4.16
2657 4018 1.401552 GTAAGCAAATCATCAGCCGCA 59.598 47.619 0.00 0.00 0.00 5.69
2660 4021 2.792542 GCACGTAAGCAAATCATCAGCC 60.793 50.000 0.00 0.00 45.62 4.85
2692 4053 1.869132 CCATCAGCACATCATACACGG 59.131 52.381 0.00 0.00 0.00 4.94
2693 4054 2.554142 ACCATCAGCACATCATACACG 58.446 47.619 0.00 0.00 0.00 4.49
2698 4066 1.479323 GCCAAACCATCAGCACATCAT 59.521 47.619 0.00 0.00 0.00 2.45
2736 4104 2.542907 CCCTGCAACACACACGTCC 61.543 63.158 0.00 0.00 0.00 4.79
2738 4106 2.112198 CACCCTGCAACACACACGT 61.112 57.895 0.00 0.00 0.00 4.49
2739 4107 2.715005 CACCCTGCAACACACACG 59.285 61.111 0.00 0.00 0.00 4.49
2742 4110 3.964875 CGCCACCCTGCAACACAC 61.965 66.667 0.00 0.00 0.00 3.82
2743 4111 4.497984 ACGCCACCCTGCAACACA 62.498 61.111 0.00 0.00 0.00 3.72
2744 4112 3.964875 CACGCCACCCTGCAACAC 61.965 66.667 0.00 0.00 0.00 3.32
2791 4163 2.040939 TGAAGTACCTGAACCCGTTGA 58.959 47.619 0.00 0.00 0.00 3.18
2792 4164 2.536761 TGAAGTACCTGAACCCGTTG 57.463 50.000 0.00 0.00 0.00 4.10
2793 4165 2.486013 GGTTGAAGTACCTGAACCCGTT 60.486 50.000 1.62 0.00 35.23 4.44
2794 4166 1.071228 GGTTGAAGTACCTGAACCCGT 59.929 52.381 1.62 0.00 35.23 5.28
2795 4167 1.346722 AGGTTGAAGTACCTGAACCCG 59.653 52.381 9.00 0.00 46.71 5.28
2803 4175 1.071699 TCAGCACCAGGTTGAAGTACC 59.928 52.381 0.00 0.00 33.43 3.34
2804 4176 2.543777 TCAGCACCAGGTTGAAGTAC 57.456 50.000 0.00 0.00 33.43 2.73
2805 4177 2.637382 TGATCAGCACCAGGTTGAAGTA 59.363 45.455 0.00 0.00 40.31 2.24
2806 4178 1.421268 TGATCAGCACCAGGTTGAAGT 59.579 47.619 0.00 0.00 40.31 3.01
2807 4179 1.808945 GTGATCAGCACCAGGTTGAAG 59.191 52.381 0.00 0.00 40.31 3.02
2808 4180 1.877680 CGTGATCAGCACCAGGTTGAA 60.878 52.381 0.00 0.00 44.85 2.69
3061 5157 1.221021 GGAAGGTCACGGTGGGATC 59.779 63.158 8.50 2.40 0.00 3.36
3062 5158 2.298661 GGGAAGGTCACGGTGGGAT 61.299 63.158 8.50 0.00 0.00 3.85
3065 5161 1.003718 GAAGGGAAGGTCACGGTGG 60.004 63.158 8.50 0.00 0.00 4.61
3067 5163 1.152096 AGGAAGGGAAGGTCACGGT 60.152 57.895 0.00 0.00 0.00 4.83
3069 5165 0.977395 AAGAGGAAGGGAAGGTCACG 59.023 55.000 0.00 0.00 0.00 4.35
3070 5166 2.235155 GAGAAGAGGAAGGGAAGGTCAC 59.765 54.545 0.00 0.00 0.00 3.67
3074 5170 0.827368 CGGAGAAGAGGAAGGGAAGG 59.173 60.000 0.00 0.00 0.00 3.46
3075 5171 0.827368 CCGGAGAAGAGGAAGGGAAG 59.173 60.000 0.00 0.00 0.00 3.46
3076 5172 1.265454 GCCGGAGAAGAGGAAGGGAA 61.265 60.000 5.05 0.00 0.00 3.97
3077 5173 1.686110 GCCGGAGAAGAGGAAGGGA 60.686 63.158 5.05 0.00 0.00 4.20
3078 5174 2.904131 GCCGGAGAAGAGGAAGGG 59.096 66.667 5.05 0.00 0.00 3.95
3107 5203 3.721370 ATGAACCTCCCGCCCATGC 62.721 63.158 0.00 0.00 0.00 4.06
3108 5204 1.526917 GATGAACCTCCCGCCCATG 60.527 63.158 0.00 0.00 0.00 3.66
3109 5205 2.919043 GATGAACCTCCCGCCCAT 59.081 61.111 0.00 0.00 0.00 4.00
3114 5210 4.785511 ATATAAGACGATGAACCTCCCG 57.214 45.455 0.00 0.00 0.00 5.14
3116 5212 9.286946 CGTTTATATATAAGACGATGAACCTCC 57.713 37.037 22.21 0.00 33.15 4.30
3141 5237 7.812191 CCCACTAGTATGTAGTAGTAGTACTCG 59.188 44.444 13.60 4.14 44.19 4.18
3142 5238 8.646900 ACCCACTAGTATGTAGTAGTAGTACTC 58.353 40.741 13.60 6.83 44.19 2.59
3143 5239 8.428063 CACCCACTAGTATGTAGTAGTAGTACT 58.572 40.741 14.57 14.57 44.19 2.73
3144 5240 8.424918 TCACCCACTAGTATGTAGTAGTAGTAC 58.575 40.741 8.04 8.04 44.19 2.73
3148 5244 7.443302 ACTCACCCACTAGTATGTAGTAGTA 57.557 40.000 0.00 0.00 39.71 1.82
3150 5246 8.921353 ATTACTCACCCACTAGTATGTAGTAG 57.079 38.462 0.00 1.29 35.75 2.57
3152 5248 9.129532 GTAATTACTCACCCACTAGTATGTAGT 57.870 37.037 8.41 0.00 0.00 2.73
3156 5252 9.128404 TGTAGTAATTACTCACCCACTAGTATG 57.872 37.037 21.25 0.00 37.73 2.39
3157 5253 9.352191 CTGTAGTAATTACTCACCCACTAGTAT 57.648 37.037 21.25 0.00 37.73 2.12
3168 5264 5.646793 ACTCGCTCACTGTAGTAATTACTCA 59.353 40.000 21.25 16.56 37.73 3.41
3190 5286 1.069765 CCAACACAGACCGCTCACT 59.930 57.895 0.00 0.00 0.00 3.41
3192 5288 1.227527 CACCAACACAGACCGCTCA 60.228 57.895 0.00 0.00 0.00 4.26
3196 5292 1.091537 AAACACACCAACACAGACCG 58.908 50.000 0.00 0.00 0.00 4.79
3200 5296 2.733858 CGGGAAAAACACACCAACACAG 60.734 50.000 0.00 0.00 0.00 3.66
3223 5319 4.954970 ACAGGCCACGCACCAAGG 62.955 66.667 5.01 0.00 0.00 3.61
3280 5379 7.897575 AATCAAGACTAGACTTTTACTGCTG 57.102 36.000 4.64 0.00 0.00 4.41
3523 5643 7.041107 GGGAATCATCAAGCTGATAGATAGAC 58.959 42.308 0.00 0.00 34.28 2.59
3527 5647 7.565190 TTAGGGAATCATCAAGCTGATAGAT 57.435 36.000 0.00 0.00 34.28 1.98
3546 5666 0.588252 GCACATACGCAGCATTAGGG 59.412 55.000 0.00 0.00 0.00 3.53
3547 5667 1.003545 GTGCACATACGCAGCATTAGG 60.004 52.381 13.17 0.00 44.05 2.69
3548 5668 1.935873 AGTGCACATACGCAGCATTAG 59.064 47.619 21.04 0.00 44.05 1.73
3549 5669 1.665169 CAGTGCACATACGCAGCATTA 59.335 47.619 21.04 0.00 44.05 1.90
3552 5672 2.034317 CCAGTGCACATACGCAGCA 61.034 57.895 21.04 0.00 44.05 4.41
3553 5673 2.787249 CCAGTGCACATACGCAGC 59.213 61.111 21.04 0.00 44.05 5.25
3557 5677 2.824041 GGGGCCAGTGCACATACG 60.824 66.667 21.04 4.07 45.22 3.06
3560 5680 2.937689 AGAGGGGCCAGTGCACAT 60.938 61.111 21.04 0.75 45.22 3.21
3561 5681 3.640407 GAGAGGGGCCAGTGCACA 61.640 66.667 21.04 0.00 45.22 4.57
3562 5682 3.322318 GAGAGAGGGGCCAGTGCAC 62.322 68.421 9.40 9.40 41.50 4.57
3565 5685 1.001503 AGAGAGAGAGGGGCCAGTG 59.998 63.158 4.39 0.00 0.00 3.66
3566 5686 1.221213 AGAGAGAGAGAGGGGCCAGT 61.221 60.000 4.39 0.00 0.00 4.00
3569 5689 1.146982 ACATAGAGAGAGAGAGGGGCC 59.853 57.143 0.00 0.00 0.00 5.80
3570 5690 2.238521 CACATAGAGAGAGAGAGGGGC 58.761 57.143 0.00 0.00 0.00 5.80
3571 5691 2.158475 AGCACATAGAGAGAGAGAGGGG 60.158 54.545 0.00 0.00 0.00 4.79
3572 5692 3.228188 AGCACATAGAGAGAGAGAGGG 57.772 52.381 0.00 0.00 0.00 4.30
3573 5693 3.953612 ACAAGCACATAGAGAGAGAGAGG 59.046 47.826 0.00 0.00 0.00 3.69
3574 5694 4.398988 ACACAAGCACATAGAGAGAGAGAG 59.601 45.833 0.00 0.00 0.00 3.20
3575 5695 4.339748 ACACAAGCACATAGAGAGAGAGA 58.660 43.478 0.00 0.00 0.00 3.10
3577 5697 5.654209 ACATACACAAGCACATAGAGAGAGA 59.346 40.000 0.00 0.00 0.00 3.10
3579 5699 5.921962 ACATACACAAGCACATAGAGAGA 57.078 39.130 0.00 0.00 0.00 3.10
3580 5700 5.292834 CCAACATACACAAGCACATAGAGAG 59.707 44.000 0.00 0.00 0.00 3.20
3581 5701 5.178061 CCAACATACACAAGCACATAGAGA 58.822 41.667 0.00 0.00 0.00 3.10
3583 5703 4.260985 CCCAACATACACAAGCACATAGA 58.739 43.478 0.00 0.00 0.00 1.98
3584 5704 4.009675 ACCCAACATACACAAGCACATAG 58.990 43.478 0.00 0.00 0.00 2.23
3585 5705 4.027674 ACCCAACATACACAAGCACATA 57.972 40.909 0.00 0.00 0.00 2.29
3588 5708 4.320935 CCTTAACCCAACATACACAAGCAC 60.321 45.833 0.00 0.00 0.00 4.40
3589 5709 3.823873 CCTTAACCCAACATACACAAGCA 59.176 43.478 0.00 0.00 0.00 3.91
3591 5711 6.642707 TTTCCTTAACCCAACATACACAAG 57.357 37.500 0.00 0.00 0.00 3.16
3592 5712 6.209788 GGATTTCCTTAACCCAACATACACAA 59.790 38.462 0.00 0.00 0.00 3.33
3593 5713 5.712917 GGATTTCCTTAACCCAACATACACA 59.287 40.000 0.00 0.00 0.00 3.72
3594 5714 5.163693 CGGATTTCCTTAACCCAACATACAC 60.164 44.000 0.00 0.00 0.00 2.90
3598 5718 4.042271 ACGGATTTCCTTAACCCAACAT 57.958 40.909 0.00 0.00 0.00 2.71
3604 5724 1.596260 GCGCTACGGATTTCCTTAACC 59.404 52.381 0.00 0.00 0.00 2.85
3611 5731 2.522638 CCACGGCGCTACGGATTTC 61.523 63.158 6.90 0.00 38.39 2.17
3647 5767 2.045536 GCTCTCCAACAGGCAGGG 60.046 66.667 0.00 0.00 0.00 4.45
3668 5788 1.079543 AGCCATCACACTCAGCGTC 60.080 57.895 0.00 0.00 0.00 5.19
3682 5802 1.377366 TTTCCACGCGTTTTCAGCCA 61.377 50.000 10.22 0.00 0.00 4.75
3683 5803 0.660300 CTTTCCACGCGTTTTCAGCC 60.660 55.000 10.22 0.00 0.00 4.85
3731 5851 2.431430 GCAAAAGCAAGCCCTCGC 60.431 61.111 0.00 0.00 0.00 5.03
3732 5852 1.211190 GAGCAAAAGCAAGCCCTCG 59.789 57.895 0.00 0.00 0.00 4.63
3734 5854 2.270986 CCGAGCAAAAGCAAGCCCT 61.271 57.895 0.00 0.00 0.00 5.19
3736 5856 1.081175 GTCCGAGCAAAAGCAAGCC 60.081 57.895 0.00 0.00 0.00 4.35
3737 5857 1.441016 CGTCCGAGCAAAAGCAAGC 60.441 57.895 0.00 0.00 0.00 4.01
3739 5859 2.637025 GCGTCCGAGCAAAAGCAA 59.363 55.556 0.00 0.00 37.05 3.91
3740 5860 3.711842 CGCGTCCGAGCAAAAGCA 61.712 61.111 0.00 0.00 36.85 3.91
3760 5880 2.125147 TCCTTGGCGCCATTCTCG 60.125 61.111 33.25 15.71 0.00 4.04
3780 5907 2.124570 GATGCATGGTCGGTGGCT 60.125 61.111 2.46 0.00 0.00 4.75
3797 5933 2.673862 TGCGTATGGTGAAAACGGTATG 59.326 45.455 0.00 0.00 37.12 2.39
3798 5934 2.975266 TGCGTATGGTGAAAACGGTAT 58.025 42.857 0.00 0.00 37.12 2.73
3799 5935 2.452295 TGCGTATGGTGAAAACGGTA 57.548 45.000 0.00 0.00 37.12 4.02
3811 5947 1.941975 TGCAGAACCATGATGCGTATG 59.058 47.619 0.00 0.00 42.92 2.39
3815 5951 1.063649 GCTGCAGAACCATGATGCG 59.936 57.895 20.43 0.00 42.92 4.73
3825 5961 2.253758 GCACAAGGACGCTGCAGAA 61.254 57.895 20.43 0.00 0.00 3.02
3887 6030 4.796495 GCCTTTCCCCGCGGATGT 62.796 66.667 30.73 0.00 38.24 3.06
3895 6043 1.746991 CTCGCTTCTGCCTTTCCCC 60.747 63.158 0.00 0.00 35.36 4.81
3899 6047 0.312102 GCAAACTCGCTTCTGCCTTT 59.688 50.000 0.00 0.00 35.36 3.11
3931 6079 0.464870 TTTGTTTGACTCGGACCCGA 59.535 50.000 10.97 10.97 46.87 5.14
3932 6080 0.584876 GTTTGTTTGACTCGGACCCG 59.415 55.000 1.31 1.31 41.35 5.28
3934 6082 3.119779 TGTTTGTTTGTTTGACTCGGACC 60.120 43.478 0.00 0.00 0.00 4.46
3935 6083 4.086199 TGTTTGTTTGTTTGACTCGGAC 57.914 40.909 0.00 0.00 0.00 4.79
3936 6084 3.127895 CCTGTTTGTTTGTTTGACTCGGA 59.872 43.478 0.00 0.00 0.00 4.55
3937 6085 3.434637 CCTGTTTGTTTGTTTGACTCGG 58.565 45.455 0.00 0.00 0.00 4.63
3938 6086 3.127895 TCCCTGTTTGTTTGTTTGACTCG 59.872 43.478 0.00 0.00 0.00 4.18
3940 6088 3.829601 TGTCCCTGTTTGTTTGTTTGACT 59.170 39.130 0.00 0.00 0.00 3.41
3942 6090 3.367910 GCTGTCCCTGTTTGTTTGTTTGA 60.368 43.478 0.00 0.00 0.00 2.69
3943 6091 2.929398 GCTGTCCCTGTTTGTTTGTTTG 59.071 45.455 0.00 0.00 0.00 2.93
3944 6092 2.416701 CGCTGTCCCTGTTTGTTTGTTT 60.417 45.455 0.00 0.00 0.00 2.83
3945 6093 1.134175 CGCTGTCCCTGTTTGTTTGTT 59.866 47.619 0.00 0.00 0.00 2.83
3946 6094 0.738389 CGCTGTCCCTGTTTGTTTGT 59.262 50.000 0.00 0.00 0.00 2.83
3952 6100 1.152963 AGCAACGCTGTCCCTGTTT 60.153 52.632 0.00 0.00 37.57 2.83
4008 6160 2.668550 GACACGAAGGGGGCACAC 60.669 66.667 0.00 0.00 0.00 3.82
4012 6164 0.822121 ACTTTTGACACGAAGGGGGC 60.822 55.000 0.00 0.00 0.00 5.80
4015 6170 4.364415 TTTTGACTTTTGACACGAAGGG 57.636 40.909 0.00 0.00 0.00 3.95
4026 6181 2.593346 TGCCGTGCATTTTGACTTTT 57.407 40.000 0.00 0.00 31.71 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.