Multiple sequence alignment - TraesCS5B01G493800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G493800 chr5B 100.000 5932 0 0 1 5932 661837199 661831268 0.000000e+00 10955.0
1 TraesCS5B01G493800 chr5B 89.815 216 22 0 4043 4258 661833049 661832834 1.630000e-70 278.0
2 TraesCS5B01G493800 chr5B 89.815 216 22 0 4151 4366 661833157 661832942 1.630000e-70 278.0
3 TraesCS5B01G493800 chr5B 90.132 152 15 0 4043 4194 661832995 661832844 1.300000e-46 198.0
4 TraesCS5B01G493800 chr5B 90.132 152 15 0 4205 4356 661833157 661833006 1.300000e-46 198.0
5 TraesCS5B01G493800 chr5B 92.553 94 2 4 1 94 391634989 391635077 4.820000e-26 130.0
6 TraesCS5B01G493800 chr5B 86.957 115 15 0 100 214 711295476 711295362 4.820000e-26 130.0
7 TraesCS5B01G493800 chr5D 93.704 2716 129 12 923 3630 526451036 526448355 0.000000e+00 4030.0
8 TraesCS5B01G493800 chr5D 91.210 2116 138 25 3695 5804 526448339 526446266 0.000000e+00 2833.0
9 TraesCS5B01G493800 chr5D 89.888 267 26 1 4097 4362 526447994 526447728 5.690000e-90 342.0
10 TraesCS5B01G493800 chr5D 88.519 270 31 0 4043 4312 526447940 526447671 1.590000e-85 327.0
11 TraesCS5B01G493800 chr5D 86.574 216 29 0 4151 4366 526447994 526447779 7.680000e-59 239.0
12 TraesCS5B01G493800 chr5D 87.379 206 26 0 4043 4248 526447886 526447681 2.760000e-58 237.0
13 TraesCS5B01G493800 chr5D 92.045 88 6 1 5846 5932 50623039 50622952 8.070000e-24 122.0
14 TraesCS5B01G493800 chr5A 92.767 2378 151 10 1502 3878 653668569 653666212 0.000000e+00 3419.0
15 TraesCS5B01G493800 chr5A 92.602 1176 74 7 4043 5205 653665916 653664741 0.000000e+00 1677.0
16 TraesCS5B01G493800 chr5A 91.641 646 42 7 155 790 653671052 653670409 0.000000e+00 883.0
17 TraesCS5B01G493800 chr5A 90.354 508 25 11 928 1422 653669413 653668917 0.000000e+00 645.0
18 TraesCS5B01G493800 chr5A 86.349 608 42 11 5203 5807 653664467 653663898 5.050000e-175 625.0
19 TraesCS5B01G493800 chr5A 87.928 497 37 11 3877 4362 653666125 653665641 1.120000e-156 564.0
20 TraesCS5B01G493800 chr5A 89.313 262 25 1 4051 4309 653665848 653665587 5.730000e-85 326.0
21 TraesCS5B01G493800 chr7A 96.552 87 2 1 5847 5932 673091092 673091006 6.200000e-30 143.0
22 TraesCS5B01G493800 chr6D 95.556 90 3 1 5844 5932 986664 986575 6.200000e-30 143.0
23 TraesCS5B01G493800 chr1D 92.632 95 4 3 1 94 249744447 249744539 3.730000e-27 134.0
24 TraesCS5B01G493800 chr3D 92.473 93 5 2 1 92 535554682 535554591 1.340000e-26 132.0
25 TraesCS5B01G493800 chr3D 94.444 72 2 2 25 95 330714245 330714175 6.290000e-20 110.0
26 TraesCS5B01G493800 chr2A 93.023 86 5 1 5848 5932 99153894 99153809 2.240000e-24 124.0
27 TraesCS5B01G493800 chr6B 85.833 120 12 5 254 370 309684126 309684243 8.070000e-24 122.0
28 TraesCS5B01G493800 chrUn 91.111 90 7 1 5844 5932 134502650 134502739 2.900000e-23 121.0
29 TraesCS5B01G493800 chrUn 83.478 115 18 1 100 214 28770315 28770428 8.130000e-19 106.0
30 TraesCS5B01G493800 chr2D 91.954 87 6 1 5847 5932 77603811 77603897 2.900000e-23 121.0
31 TraesCS5B01G493800 chr2D 93.056 72 3 2 30 100 176069511 176069441 2.920000e-18 104.0
32 TraesCS5B01G493800 chr1A 90.909 88 7 1 5846 5932 534854975 534854888 3.760000e-22 117.0
33 TraesCS5B01G493800 chr7D 87.234 94 6 4 1 94 521908745 521908832 1.050000e-17 102.0
34 TraesCS5B01G493800 chr7D 88.506 87 2 4 8 93 89828104 89828025 1.360000e-16 99.0
35 TraesCS5B01G493800 chr7D 89.706 68 4 2 29 94 71335940 71336006 3.810000e-12 84.2
36 TraesCS5B01G493800 chr2B 86.735 98 5 4 1 98 142382414 142382325 1.050000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G493800 chr5B 661831268 661837199 5931 True 10955.000000 10955 100.000000 1 5932 1 chr5B.!!$R1 5931
1 TraesCS5B01G493800 chr5D 526446266 526451036 4770 True 1334.666667 4030 89.545667 923 5804 6 chr5D.!!$R2 4881
2 TraesCS5B01G493800 chr5A 653663898 653671052 7154 True 1162.714286 3419 90.136286 155 5807 7 chr5A.!!$R1 5652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 1711 0.244450 GTCGTGGTCGTGAATACCCA 59.756 55.0 0.00 0.00 36.06 4.51 F
1376 2277 0.245539 CTCGGCGGTTTCTCCACTTA 59.754 55.0 7.21 0.00 35.57 2.24 F
1445 2609 0.616111 ACAGCCAGGTACCTCCTCAG 60.616 60.0 12.84 0.00 46.24 3.35 F
2221 3395 0.811281 GGCTGCTTGACATGGTTACC 59.189 55.0 0.00 0.00 0.00 2.85 F
2537 3711 0.467384 AGCTCCGCATACTGCAGAAT 59.533 50.0 23.35 0.27 45.36 2.40 F
4172 5436 0.038892 AAGCAGCAACCGCAAATCAG 60.039 50.0 0.00 0.00 42.27 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2225 3399 0.106708 TCAGTGCGGCTCTTTGAGTT 59.893 50.000 1.10 0.0 31.39 3.01 R
2226 3400 0.322975 ATCAGTGCGGCTCTTTGAGT 59.677 50.000 1.10 0.0 31.39 3.41 R
2372 3546 1.200020 GTTGACATTGGTAGCTGGTGC 59.800 52.381 0.00 0.0 40.05 5.01 R
4082 5346 0.539438 CTTGTTGCTGGCCCAGGTTA 60.539 55.000 13.78 0.0 31.21 2.85 R
4336 5609 1.608590 AGTTTTGCTGTGGTGAATCCG 59.391 47.619 0.00 0.0 39.52 4.18 R
5827 7447 0.036765 TAGGATCGTGTGGTTGTGGC 60.037 55.000 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.152400 GCCGACGGGGGTCATAGT 61.152 66.667 17.22 0.00 35.78 2.12
18 19 2.728435 GCCGACGGGGGTCATAGTT 61.728 63.158 17.22 0.00 35.78 2.24
19 20 1.902556 CCGACGGGGGTCATAGTTT 59.097 57.895 5.81 0.00 0.00 2.66
20 21 0.251073 CCGACGGGGGTCATAGTTTT 59.749 55.000 5.81 0.00 0.00 2.43
21 22 1.365699 CGACGGGGGTCATAGTTTTG 58.634 55.000 0.00 0.00 0.00 2.44
22 23 1.066716 CGACGGGGGTCATAGTTTTGA 60.067 52.381 0.00 0.00 0.00 2.69
23 24 2.419574 CGACGGGGGTCATAGTTTTGAT 60.420 50.000 0.00 0.00 0.00 2.57
24 25 3.617284 GACGGGGGTCATAGTTTTGATT 58.383 45.455 0.00 0.00 0.00 2.57
25 26 4.014406 GACGGGGGTCATAGTTTTGATTT 58.986 43.478 0.00 0.00 0.00 2.17
26 27 5.182169 ACGGGGGTCATAGTTTTGATTTA 57.818 39.130 0.00 0.00 0.00 1.40
27 28 5.762279 ACGGGGGTCATAGTTTTGATTTAT 58.238 37.500 0.00 0.00 0.00 1.40
28 29 6.192044 ACGGGGGTCATAGTTTTGATTTATT 58.808 36.000 0.00 0.00 0.00 1.40
29 30 6.666113 ACGGGGGTCATAGTTTTGATTTATTT 59.334 34.615 0.00 0.00 0.00 1.40
30 31 7.179516 ACGGGGGTCATAGTTTTGATTTATTTT 59.820 33.333 0.00 0.00 0.00 1.82
31 32 8.038351 CGGGGGTCATAGTTTTGATTTATTTTT 58.962 33.333 0.00 0.00 0.00 1.94
55 56 7.399245 TTTTGCATTGGGTACTATAGTTTCC 57.601 36.000 11.40 13.42 0.00 3.13
56 57 4.699637 TGCATTGGGTACTATAGTTTCCG 58.300 43.478 11.40 3.54 0.00 4.30
57 58 4.406326 TGCATTGGGTACTATAGTTTCCGA 59.594 41.667 11.40 12.65 0.00 4.55
58 59 5.104859 TGCATTGGGTACTATAGTTTCCGAA 60.105 40.000 11.40 16.20 0.00 4.30
59 60 5.995897 GCATTGGGTACTATAGTTTCCGAAT 59.004 40.000 20.43 20.43 33.50 3.34
60 61 6.485648 GCATTGGGTACTATAGTTTCCGAATT 59.514 38.462 22.07 12.52 32.22 2.17
61 62 7.012989 GCATTGGGTACTATAGTTTCCGAATTT 59.987 37.037 22.07 10.45 32.22 1.82
62 63 7.852971 TTGGGTACTATAGTTTCCGAATTTG 57.147 36.000 11.40 0.00 0.00 2.32
63 64 5.818857 TGGGTACTATAGTTTCCGAATTTGC 59.181 40.000 11.40 1.49 0.00 3.68
64 65 6.053650 GGGTACTATAGTTTCCGAATTTGCT 58.946 40.000 11.40 0.00 0.00 3.91
65 66 7.147689 TGGGTACTATAGTTTCCGAATTTGCTA 60.148 37.037 11.40 0.00 0.00 3.49
66 67 7.876582 GGGTACTATAGTTTCCGAATTTGCTAT 59.123 37.037 11.40 0.00 0.00 2.97
67 68 9.918630 GGTACTATAGTTTCCGAATTTGCTATA 57.081 33.333 11.40 0.00 0.00 1.31
114 115 6.470557 AAAAATCGGTTTGATGCTTGATTG 57.529 33.333 0.00 0.00 37.39 2.67
115 116 5.389859 AAATCGGTTTGATGCTTGATTGA 57.610 34.783 0.00 0.00 37.39 2.57
116 117 5.389859 AATCGGTTTGATGCTTGATTGAA 57.610 34.783 0.00 0.00 37.39 2.69
117 118 4.844998 TCGGTTTGATGCTTGATTGAAA 57.155 36.364 0.00 0.00 0.00 2.69
118 119 4.545610 TCGGTTTGATGCTTGATTGAAAC 58.454 39.130 0.00 0.00 0.00 2.78
119 120 4.037327 TCGGTTTGATGCTTGATTGAAACA 59.963 37.500 0.00 0.00 0.00 2.83
120 121 4.925054 CGGTTTGATGCTTGATTGAAACAT 59.075 37.500 0.00 0.00 0.00 2.71
121 122 5.164031 CGGTTTGATGCTTGATTGAAACATG 60.164 40.000 0.00 0.00 0.00 3.21
122 123 5.927689 GGTTTGATGCTTGATTGAAACATGA 59.072 36.000 0.00 0.00 0.00 3.07
123 124 6.592607 GGTTTGATGCTTGATTGAAACATGAT 59.407 34.615 0.00 0.00 0.00 2.45
124 125 7.201496 GGTTTGATGCTTGATTGAAACATGATC 60.201 37.037 0.00 0.00 0.00 2.92
125 126 6.769134 TGATGCTTGATTGAAACATGATCT 57.231 33.333 0.00 0.00 0.00 2.75
126 127 7.165460 TGATGCTTGATTGAAACATGATCTT 57.835 32.000 0.00 0.00 0.00 2.40
127 128 7.608153 TGATGCTTGATTGAAACATGATCTTT 58.392 30.769 0.00 0.00 0.00 2.52
128 129 8.741841 TGATGCTTGATTGAAACATGATCTTTA 58.258 29.630 0.00 0.00 0.00 1.85
129 130 9.577110 GATGCTTGATTGAAACATGATCTTTAA 57.423 29.630 0.00 0.00 0.00 1.52
131 132 9.932207 TGCTTGATTGAAACATGATCTTTAATT 57.068 25.926 0.00 0.00 0.00 1.40
144 145 9.688592 CATGATCTTTAATTCTTAATGCCTTCC 57.311 33.333 0.00 0.00 0.00 3.46
145 146 8.237811 TGATCTTTAATTCTTAATGCCTTCCC 57.762 34.615 0.00 0.00 0.00 3.97
146 147 7.287696 TGATCTTTAATTCTTAATGCCTTCCCC 59.712 37.037 0.00 0.00 0.00 4.81
147 148 6.741724 TCTTTAATTCTTAATGCCTTCCCCT 58.258 36.000 0.00 0.00 0.00 4.79
148 149 7.189087 TCTTTAATTCTTAATGCCTTCCCCTT 58.811 34.615 0.00 0.00 0.00 3.95
149 150 7.678171 TCTTTAATTCTTAATGCCTTCCCCTTT 59.322 33.333 0.00 0.00 0.00 3.11
150 151 5.939764 AATTCTTAATGCCTTCCCCTTTC 57.060 39.130 0.00 0.00 0.00 2.62
151 152 3.382083 TCTTAATGCCTTCCCCTTTCC 57.618 47.619 0.00 0.00 0.00 3.13
152 153 2.652348 TCTTAATGCCTTCCCCTTTCCA 59.348 45.455 0.00 0.00 0.00 3.53
153 154 3.272020 TCTTAATGCCTTCCCCTTTCCAT 59.728 43.478 0.00 0.00 0.00 3.41
171 172 8.371699 CCTTTCCATGTTGTTTCCCTTAATTTA 58.628 33.333 0.00 0.00 0.00 1.40
420 423 3.217626 CAGATCTTTGGAACATAGGGGC 58.782 50.000 0.00 0.00 39.30 5.80
421 424 2.852449 AGATCTTTGGAACATAGGGGCA 59.148 45.455 0.00 0.00 39.30 5.36
440 443 1.066716 CACCAATGCACCTCAAATGGG 60.067 52.381 0.00 0.00 39.01 4.00
447 450 2.768527 TGCACCTCAAATGGGAAAAACA 59.231 40.909 0.00 0.00 0.00 2.83
455 458 7.719193 ACCTCAAATGGGAAAAACAATTTTAGG 59.281 33.333 5.24 5.24 38.83 2.69
489 494 9.639601 AAGAGTCGAAATTTTCTGAAACTTTTT 57.360 25.926 16.37 10.66 0.00 1.94
526 531 8.942338 TGGTCTAACATAATACTCATGTGAAC 57.058 34.615 0.94 0.00 36.74 3.18
550 557 1.254026 TCACGGAGGAATGACTCGTT 58.746 50.000 0.00 0.00 38.39 3.85
555 562 3.194968 ACGGAGGAATGACTCGTTGTATT 59.805 43.478 0.00 0.00 38.39 1.89
563 570 2.894765 TGACTCGTTGTATTCTGGGTGA 59.105 45.455 0.00 0.00 0.00 4.02
635 645 7.993821 TGTAATCGCAAATTTGTTTTCTTGA 57.006 28.000 19.03 6.95 0.00 3.02
636 646 8.586570 TGTAATCGCAAATTTGTTTTCTTGAT 57.413 26.923 19.03 8.64 0.00 2.57
642 652 5.990996 GCAAATTTGTTTTCTTGATCCTGGA 59.009 36.000 19.03 0.00 0.00 3.86
677 687 2.961522 TCCTTCGCGAACATTTTCAC 57.038 45.000 19.38 0.00 0.00 3.18
683 693 2.869801 TCGCGAACATTTTCACAAGACT 59.130 40.909 6.20 0.00 0.00 3.24
702 712 4.636206 AGACTCATTGGCTATTTCCGTTTC 59.364 41.667 0.00 0.00 27.54 2.78
833 1690 1.792949 GGATCGGTTGATGTACATCGC 59.207 52.381 26.56 21.45 40.63 4.58
834 1691 1.792949 GATCGGTTGATGTACATCGCC 59.207 52.381 26.56 26.62 40.63 5.54
841 1698 1.206745 GATGTACATCGCCGTCGTGG 61.207 60.000 19.63 0.00 42.50 4.94
842 1699 1.940883 ATGTACATCGCCGTCGTGGT 61.941 55.000 1.41 0.00 41.21 4.16
843 1700 1.870901 GTACATCGCCGTCGTGGTC 60.871 63.158 0.00 0.00 41.21 4.02
844 1701 3.385440 TACATCGCCGTCGTGGTCG 62.385 63.158 0.00 3.47 41.21 4.79
845 1702 4.771356 CATCGCCGTCGTGGTCGT 62.771 66.667 10.74 1.17 41.21 4.34
846 1703 4.771356 ATCGCCGTCGTGGTCGTG 62.771 66.667 10.74 0.00 41.21 4.35
848 1705 4.986587 CGCCGTCGTGGTCGTGAA 62.987 66.667 0.00 0.00 41.21 3.18
849 1706 2.431942 GCCGTCGTGGTCGTGAAT 60.432 61.111 0.00 0.00 41.21 2.57
850 1707 1.153978 GCCGTCGTGGTCGTGAATA 60.154 57.895 0.00 0.00 41.21 1.75
851 1708 1.408474 GCCGTCGTGGTCGTGAATAC 61.408 60.000 0.00 0.00 41.21 1.89
852 1709 0.799534 CCGTCGTGGTCGTGAATACC 60.800 60.000 0.00 0.00 38.33 2.73
853 1710 0.799534 CGTCGTGGTCGTGAATACCC 60.800 60.000 0.00 0.00 36.06 3.69
854 1711 0.244450 GTCGTGGTCGTGAATACCCA 59.756 55.000 0.00 0.00 36.06 4.51
855 1712 1.134907 GTCGTGGTCGTGAATACCCAT 60.135 52.381 0.00 0.00 36.06 4.00
856 1713 1.134936 TCGTGGTCGTGAATACCCATG 60.135 52.381 0.00 0.00 36.06 3.66
866 1723 8.041323 GGTCGTGAATACCCATGATTAAGATAT 58.959 37.037 0.00 0.00 34.90 1.63
876 1733 7.183475 ACCCATGATTAAGATATCATAGTGGCT 59.817 37.037 5.32 0.00 42.00 4.75
881 1738 8.432013 TGATTAAGATATCATAGTGGCTGTTGT 58.568 33.333 5.32 0.00 29.82 3.32
921 1783 7.431249 TCCAAGTTGGCTATAGAATAGTAACG 58.569 38.462 17.68 0.00 37.47 3.18
923 1785 6.401047 AGTTGGCTATAGAATAGTAACGCA 57.599 37.500 3.21 0.00 0.00 5.24
924 1786 6.812998 AGTTGGCTATAGAATAGTAACGCAA 58.187 36.000 3.21 0.00 0.00 4.85
925 1787 7.442656 AGTTGGCTATAGAATAGTAACGCAAT 58.557 34.615 3.21 0.00 0.00 3.56
936 1821 4.521130 AGTAACGCAATGAGACAAGAGA 57.479 40.909 0.00 0.00 0.00 3.10
966 1855 6.572153 ATGAAATTCGTACGCGTTAATACA 57.428 33.333 20.78 17.20 39.49 2.29
1018 1907 3.697424 TGCGCTTGCATTCCCAAT 58.303 50.000 9.73 0.00 45.56 3.16
1019 1908 1.973760 TGCGCTTGCATTCCCAATT 59.026 47.368 9.73 0.00 45.56 2.32
1020 1909 0.321021 TGCGCTTGCATTCCCAATTT 59.679 45.000 9.73 0.00 45.56 1.82
1021 1910 1.001624 GCGCTTGCATTCCCAATTTC 58.998 50.000 0.00 0.00 38.92 2.17
1022 1911 1.643880 CGCTTGCATTCCCAATTTCC 58.356 50.000 0.00 0.00 0.00 3.13
1023 1912 1.740043 CGCTTGCATTCCCAATTTCCC 60.740 52.381 0.00 0.00 0.00 3.97
1024 1913 1.278699 GCTTGCATTCCCAATTTCCCA 59.721 47.619 0.00 0.00 0.00 4.37
1029 1918 2.566724 GCATTCCCAATTTCCCAGACAA 59.433 45.455 0.00 0.00 0.00 3.18
1042 1931 5.755409 TCCCAGACAACATTTAGAGCTAA 57.245 39.130 0.00 0.00 0.00 3.09
1043 1932 6.121776 TCCCAGACAACATTTAGAGCTAAA 57.878 37.500 5.26 5.26 39.12 1.85
1044 1933 6.539173 TCCCAGACAACATTTAGAGCTAAAA 58.461 36.000 6.76 0.00 38.38 1.52
1073 1962 5.317733 AGAACACTTGATAGAGGAGAACG 57.682 43.478 0.00 0.00 0.00 3.95
1087 1976 3.755697 GAACGAAGCTGCTTGGTTC 57.244 52.632 36.72 36.72 45.98 3.62
1115 2004 1.453762 GCAAGCAGGATGGAGATGGC 61.454 60.000 0.00 0.00 35.86 4.40
1167 2068 2.733593 GTGCGTGGAGTCGTGGTC 60.734 66.667 0.00 0.00 0.00 4.02
1209 2110 2.435586 CAAGGTGCTCGAGGGCTG 60.436 66.667 15.58 0.00 0.00 4.85
1376 2277 0.245539 CTCGGCGGTTTCTCCACTTA 59.754 55.000 7.21 0.00 35.57 2.24
1383 2284 3.864003 GCGGTTTCTCCACTTATCTACAC 59.136 47.826 0.00 0.00 35.57 2.90
1445 2609 0.616111 ACAGCCAGGTACCTCCTCAG 60.616 60.000 12.84 0.00 46.24 3.35
1482 2646 8.453238 TTCTTATGACTGTAGATGACTAGTCC 57.547 38.462 20.11 5.74 36.32 3.85
1584 2758 6.105333 CAGAATTTTTCAACCAAGTTCCACA 58.895 36.000 0.00 0.00 0.00 4.17
1631 2805 1.078988 TACACGAAATGGGGGCGAC 60.079 57.895 0.00 0.00 0.00 5.19
1636 2810 1.078708 GAAATGGGGGCGACGAAGA 60.079 57.895 0.00 0.00 0.00 2.87
1666 2840 1.007387 CCGAGCAACTGGCCAAAAC 60.007 57.895 7.01 0.00 46.50 2.43
1730 2904 2.733956 TCATAACCATTGTGGCCTTCC 58.266 47.619 3.32 0.00 42.67 3.46
1802 2976 4.553756 TCACTTTCCATCTATCGTCTCG 57.446 45.455 0.00 0.00 0.00 4.04
1808 2982 1.603172 CCATCTATCGTCTCGTTGCCC 60.603 57.143 0.00 0.00 0.00 5.36
1822 2996 0.904865 TTGCCCTCCTGTCGAGACAT 60.905 55.000 6.37 0.00 41.63 3.06
1827 3001 1.068281 CCTCCTGTCGAGACATCATGG 59.932 57.143 6.37 4.82 41.63 3.66
1832 3006 2.282407 TGTCGAGACATCATGGCAATG 58.718 47.619 1.24 0.00 36.21 2.82
1833 3007 2.093553 TGTCGAGACATCATGGCAATGA 60.094 45.455 6.16 6.16 46.71 2.57
1916 3090 2.297701 TCTTGTGGTTGTTTCTGAGGC 58.702 47.619 0.00 0.00 0.00 4.70
2221 3395 0.811281 GGCTGCTTGACATGGTTACC 59.189 55.000 0.00 0.00 0.00 2.85
2222 3396 1.614317 GGCTGCTTGACATGGTTACCT 60.614 52.381 2.07 0.00 0.00 3.08
2223 3397 1.740025 GCTGCTTGACATGGTTACCTC 59.260 52.381 2.07 0.00 0.00 3.85
2224 3398 2.875672 GCTGCTTGACATGGTTACCTCA 60.876 50.000 2.07 0.00 0.00 3.86
2225 3399 3.411446 CTGCTTGACATGGTTACCTCAA 58.589 45.455 2.07 3.72 0.00 3.02
2226 3400 3.820467 CTGCTTGACATGGTTACCTCAAA 59.180 43.478 2.07 0.00 0.00 2.69
2256 3430 1.638133 CGCACTGATCAGAGGACAAG 58.362 55.000 29.27 10.03 0.00 3.16
2270 3444 3.136763 AGGACAAGAATATGCATCGCAG 58.863 45.455 0.19 0.00 43.65 5.18
2335 3509 2.820178 TCAGGAGCAACAGAGTCCATA 58.180 47.619 0.00 0.00 32.23 2.74
2361 3535 8.280258 TCTTCCATGATTGATCCCTACTTTAT 57.720 34.615 0.00 0.00 0.00 1.40
2377 3551 9.349713 CCCTACTTTATGAAAATATTAGCACCA 57.650 33.333 0.00 0.00 0.00 4.17
2424 3598 4.931601 TCAGACAGCTATTGACATCACAAC 59.068 41.667 0.00 0.00 32.50 3.32
2459 3633 1.067669 CTATTCAGTCAGCCAGCGCTA 59.932 52.381 10.99 0.00 46.25 4.26
2478 3652 3.686691 GCTACCAATGGAGGAGAAAGCAT 60.687 47.826 6.16 0.00 0.00 3.79
2479 3653 3.010200 ACCAATGGAGGAGAAAGCATC 57.990 47.619 6.16 0.00 0.00 3.91
2484 3658 1.839994 TGGAGGAGAAAGCATCGGATT 59.160 47.619 0.00 0.00 0.00 3.01
2493 3667 7.556275 AGGAGAAAGCATCGGATTTTGTATTTA 59.444 33.333 0.00 0.00 31.70 1.40
2495 3669 9.387123 GAGAAAGCATCGGATTTTGTATTTATC 57.613 33.333 0.00 0.00 31.70 1.75
2523 3697 6.064717 AGAAATTAATGGACATGGTAGCTCC 58.935 40.000 0.00 0.00 0.00 4.70
2527 3701 1.337384 TGGACATGGTAGCTCCGCAT 61.337 55.000 0.00 0.00 39.52 4.73
2529 3703 1.605712 GGACATGGTAGCTCCGCATAC 60.606 57.143 0.00 0.00 39.52 2.39
2530 3704 1.341531 GACATGGTAGCTCCGCATACT 59.658 52.381 0.00 0.00 39.52 2.12
2537 3711 0.467384 AGCTCCGCATACTGCAGAAT 59.533 50.000 23.35 0.27 45.36 2.40
2558 3732 8.123575 CAGAATTCATCAGAAATAGACAGCAAG 58.876 37.037 8.44 0.00 37.29 4.01
2559 3733 8.045507 AGAATTCATCAGAAATAGACAGCAAGA 58.954 33.333 8.44 0.00 37.29 3.02
2565 3739 5.934625 TCAGAAATAGACAGCAAGAAACTCC 59.065 40.000 0.00 0.00 0.00 3.85
2718 3892 5.300286 CCAAGATCATATCCCCAGTCAAAAC 59.700 44.000 0.00 0.00 0.00 2.43
2820 3994 1.538512 CAGTGGCACAGATGAAACCAG 59.461 52.381 21.41 0.00 41.80 4.00
2863 4037 2.380941 TGTAGCAACGGGATAGTAGCA 58.619 47.619 0.00 0.00 0.00 3.49
2866 4040 1.553248 AGCAACGGGATAGTAGCACAA 59.447 47.619 0.00 0.00 0.00 3.33
2867 4041 1.664151 GCAACGGGATAGTAGCACAAC 59.336 52.381 0.00 0.00 0.00 3.32
2872 4046 5.135508 ACGGGATAGTAGCACAACATATC 57.864 43.478 0.00 0.00 0.00 1.63
2903 4077 3.866703 TGGAAAAGGACCACATGTACA 57.133 42.857 0.00 0.00 32.03 2.90
2935 4109 3.330701 AGGTTCCAGCAACAAAGATCCTA 59.669 43.478 0.00 0.00 36.61 2.94
2937 4111 4.706962 GGTTCCAGCAACAAAGATCCTAAT 59.293 41.667 0.00 0.00 36.61 1.73
3044 4218 5.114780 TCTTTGATGCTGCTAATGAGAGTC 58.885 41.667 0.00 0.00 0.00 3.36
3117 4291 4.818534 ATGCCAATTGTATGACGATCAC 57.181 40.909 4.43 0.00 0.00 3.06
3128 4302 2.959516 TGACGATCACGAATTTCAGCT 58.040 42.857 0.00 0.00 42.66 4.24
3139 4313 4.816385 ACGAATTTCAGCTCAGAGACAAAA 59.184 37.500 0.00 0.00 0.00 2.44
3200 4374 7.383029 CGGTAAACGCCAGATTATATCAAACTA 59.617 37.037 0.00 0.00 34.82 2.24
3282 4456 4.673580 GCATCTCGCATCAGTCAAAACAAT 60.674 41.667 0.00 0.00 41.79 2.71
3305 4479 9.254133 CAATTCTACATGAGGTAAGAGTACATG 57.746 37.037 0.00 0.00 42.37 3.21
3308 4482 9.470399 TTCTACATGAGGTAAGAGTACATGTAA 57.530 33.333 7.25 5.27 46.38 2.41
3388 4562 2.026822 AGAGCAGTTCGGAATGGTGAAT 60.027 45.455 0.00 0.00 0.00 2.57
3477 4651 4.722194 ACATGCGTGATGAAACATAACAC 58.278 39.130 14.17 0.00 35.80 3.32
3542 4716 8.008513 TCTTGAACTAGGTTGATGTAGTATCC 57.991 38.462 0.00 0.00 0.00 2.59
3562 4736 3.559655 TCCAAGTTTGATCTGACACAACG 59.440 43.478 0.00 0.00 0.00 4.10
3574 4748 1.909532 GACACAACGATTCGTAGTCCG 59.090 52.381 12.81 2.68 39.99 4.79
3575 4749 1.265568 CACAACGATTCGTAGTCCGG 58.734 55.000 12.81 0.00 39.99 5.14
3587 4761 4.928601 TCGTAGTCCGGATCTTTATTGTG 58.071 43.478 7.81 0.00 37.11 3.33
3630 4804 3.325870 TGCTACAGTCGAATGTCCAAAG 58.674 45.455 23.25 14.97 34.56 2.77
3636 4810 6.227298 ACAGTCGAATGTCCAAAGATCTAT 57.773 37.500 13.61 0.00 0.00 1.98
3641 4815 8.356657 AGTCGAATGTCCAAAGATCTATAGAAG 58.643 37.037 6.52 0.00 0.00 2.85
3680 4854 4.384056 CATAGAGCAGATCCAAACGGAAT 58.616 43.478 0.00 0.00 35.74 3.01
3682 4856 2.503356 AGAGCAGATCCAAACGGAATCT 59.497 45.455 0.00 0.00 35.74 2.40
3683 4857 2.611292 GAGCAGATCCAAACGGAATCTG 59.389 50.000 7.12 7.12 39.14 2.90
3691 4865 4.456535 TCCAAACGGAATCTGAAAGTTCA 58.543 39.130 0.00 0.00 35.57 3.18
3692 4866 4.884744 TCCAAACGGAATCTGAAAGTTCAA 59.115 37.500 0.00 0.00 36.64 2.69
3730 4904 4.456222 TCTTTTCTTCACGTGTTTTGGACA 59.544 37.500 16.51 0.00 35.42 4.02
3747 4921 1.140161 CAGATGCATGCCAAACGGG 59.860 57.895 16.68 0.00 40.85 5.28
3772 4946 2.358322 AAAGTTCGTTGGGACCATGT 57.642 45.000 0.00 0.00 0.00 3.21
3783 4957 3.455849 TGGGACCATGTGTACTCCATAA 58.544 45.455 0.00 0.00 0.00 1.90
3792 4966 6.017605 CCATGTGTACTCCATAAGCAGAAATC 60.018 42.308 0.00 0.00 0.00 2.17
3895 5158 8.437360 TTTAATTAGTGCACATCATGAGTAGG 57.563 34.615 21.04 0.00 0.00 3.18
3912 5175 4.632153 AGTAGGATATGCACGACCATTTC 58.368 43.478 0.00 0.00 0.00 2.17
3913 5176 2.851195 AGGATATGCACGACCATTTCC 58.149 47.619 15.77 15.77 41.10 3.13
3914 5177 1.880027 GGATATGCACGACCATTTCCC 59.120 52.381 13.92 4.82 37.36 3.97
3950 5213 8.959548 TGATGTAACATTGCTGTTGAAATATCT 58.040 29.630 1.78 0.00 45.16 1.98
3957 5220 6.822667 TTGCTGTTGAAATATCTCACATGT 57.177 33.333 0.00 0.00 0.00 3.21
3959 5222 7.307493 TGCTGTTGAAATATCTCACATGTAC 57.693 36.000 0.00 0.00 0.00 2.90
3962 5225 6.957631 TGTTGAAATATCTCACATGTACCCT 58.042 36.000 0.00 0.00 0.00 4.34
4037 5301 7.333423 TGACAGGTACTCAAAGTTATATGCAAC 59.667 37.037 0.00 0.00 34.60 4.17
4038 5302 7.165485 ACAGGTACTCAAAGTTATATGCAACA 58.835 34.615 0.00 0.00 34.60 3.33
4051 5315 1.855513 TGCAACATTGAACAAGCAGC 58.144 45.000 0.00 0.00 0.00 5.25
4086 5350 3.496675 GGTTCTCCCCAGCATAACC 57.503 57.895 0.00 0.00 33.41 2.85
4088 5352 1.408822 GGTTCTCCCCAGCATAACCTG 60.409 57.143 0.00 0.00 37.27 4.00
4144 5408 3.093835 TCCCCAGCATAACCCGGG 61.094 66.667 22.25 22.25 38.52 5.73
4170 5434 0.318955 ACAAGCAGCAACCGCAAATC 60.319 50.000 0.00 0.00 42.27 2.17
4171 5435 0.318869 CAAGCAGCAACCGCAAATCA 60.319 50.000 0.00 0.00 42.27 2.57
4172 5436 0.038892 AAGCAGCAACCGCAAATCAG 60.039 50.000 0.00 0.00 42.27 2.90
4174 5438 0.730494 GCAGCAACCGCAAATCAGAC 60.730 55.000 0.00 0.00 42.27 3.51
4181 5451 1.644786 CCGCAAATCAGACGGGTTCC 61.645 60.000 0.00 0.00 43.23 3.62
4336 5609 1.142474 GCAGCAAACACAAATCAGGC 58.858 50.000 0.00 0.00 0.00 4.85
4339 5612 0.313672 GCAAACACAAATCAGGCGGA 59.686 50.000 0.00 0.00 0.00 5.54
4343 5616 2.198827 ACACAAATCAGGCGGATTCA 57.801 45.000 13.21 0.00 45.46 2.57
4352 5625 1.971167 GGCGGATTCACCACAGCAA 60.971 57.895 0.00 0.00 38.90 3.91
4356 5629 1.608590 CGGATTCACCACAGCAAAACT 59.391 47.619 0.00 0.00 38.90 2.66
4571 5898 4.275196 AGTCCAGATGATTTTGATGATGCG 59.725 41.667 0.00 0.00 0.00 4.73
4673 6000 0.553333 ATAGCTTGGAAGGGAAGGGC 59.447 55.000 0.00 0.00 0.00 5.19
4734 6061 7.282901 TGACAAAGTTATGTACATGGATGATGG 59.717 37.037 18.81 4.05 32.95 3.51
4951 6278 7.953493 AGTTTAAATAGGAATGGGTGGAAAAGA 59.047 33.333 0.00 0.00 0.00 2.52
4980 6310 0.031585 GTGGGGTTTTCTTTCGGTGC 59.968 55.000 0.00 0.00 0.00 5.01
5017 6347 3.140325 TGTTTTCTCCATGTGTCTCCC 57.860 47.619 0.00 0.00 0.00 4.30
5103 6434 3.680490 TCCGTGGATTAATTGTGCTTGA 58.320 40.909 0.00 0.00 0.00 3.02
5145 6476 7.225931 TCAAATAGCCTTTGTATGACCGTTATC 59.774 37.037 8.67 0.00 0.00 1.75
5175 6506 7.424227 TGTGGTACCGAACTTGTAAAATTAG 57.576 36.000 7.57 0.00 0.00 1.73
5243 6850 6.215121 CCACATTCATTAAGCAAGAACAACA 58.785 36.000 0.00 0.00 0.00 3.33
5244 6851 6.700960 CCACATTCATTAAGCAAGAACAACAA 59.299 34.615 0.00 0.00 0.00 2.83
5265 6874 9.565213 CAACAAGGAAAGAATATTAAGCAAGAG 57.435 33.333 0.00 0.00 0.00 2.85
5269 6878 8.353423 AGGAAAGAATATTAAGCAAGAGCAAA 57.647 30.769 0.00 0.00 45.49 3.68
5353 6963 4.196193 TCATTTTTATACCTCAGGCACCG 58.804 43.478 0.00 0.00 0.00 4.94
5374 6984 3.465871 GCCAACAACAAAACATCCACAT 58.534 40.909 0.00 0.00 0.00 3.21
5401 7011 1.282157 AGGGAGAAGGTACCATGTTGC 59.718 52.381 15.94 1.70 0.00 4.17
5465 7083 4.475135 GAGGGCCCTCCAGCGTTC 62.475 72.222 38.25 14.27 37.11 3.95
5537 7155 1.107114 CATAGCACGACTCCCTCAGT 58.893 55.000 0.00 0.00 38.45 3.41
5543 7161 3.462678 GACTCCCTCAGTCCCGCC 61.463 72.222 0.00 0.00 45.47 6.13
5656 7274 3.861263 GCGTCGAATCGGCCCAAC 61.861 66.667 0.28 0.00 0.00 3.77
5757 7377 3.219928 TCGCCTCGATCTCCTGGC 61.220 66.667 1.15 1.15 41.76 4.85
5791 7411 0.396435 ATGTGACGTGGAAAGAGCCA 59.604 50.000 0.00 0.00 35.02 4.75
5815 7435 8.864260 CAAACGCATTTTTGGAAATTCTATTC 57.136 30.769 0.00 0.00 33.25 1.75
5816 7436 8.494347 CAAACGCATTTTTGGAAATTCTATTCA 58.506 29.630 0.00 0.00 33.25 2.57
5817 7437 7.816945 ACGCATTTTTGGAAATTCTATTCAG 57.183 32.000 0.00 0.00 33.25 3.02
5818 7438 7.378181 ACGCATTTTTGGAAATTCTATTCAGT 58.622 30.769 0.00 0.00 33.25 3.41
5819 7439 7.872483 ACGCATTTTTGGAAATTCTATTCAGTT 59.128 29.630 0.00 0.00 33.25 3.16
5820 7440 8.164153 CGCATTTTTGGAAATTCTATTCAGTTG 58.836 33.333 0.00 0.00 33.25 3.16
5821 7441 9.206870 GCATTTTTGGAAATTCTATTCAGTTGA 57.793 29.630 0.00 0.00 33.25 3.18
5825 7445 6.992063 TGGAAATTCTATTCAGTTGAGAGC 57.008 37.500 0.00 0.00 0.00 4.09
5826 7446 6.475504 TGGAAATTCTATTCAGTTGAGAGCA 58.524 36.000 0.00 0.00 0.00 4.26
5827 7447 6.596888 TGGAAATTCTATTCAGTTGAGAGCAG 59.403 38.462 0.00 0.00 0.00 4.24
5828 7448 6.434018 AAATTCTATTCAGTTGAGAGCAGC 57.566 37.500 0.00 0.00 0.00 5.25
5829 7449 3.533606 TCTATTCAGTTGAGAGCAGCC 57.466 47.619 0.00 0.00 0.00 4.85
5830 7450 2.833943 TCTATTCAGTTGAGAGCAGCCA 59.166 45.455 0.00 0.00 0.00 4.75
5831 7451 1.818642 ATTCAGTTGAGAGCAGCCAC 58.181 50.000 0.00 0.00 0.00 5.01
5832 7452 0.469494 TTCAGTTGAGAGCAGCCACA 59.531 50.000 0.00 0.00 0.00 4.17
5833 7453 0.469494 TCAGTTGAGAGCAGCCACAA 59.531 50.000 0.00 0.00 0.00 3.33
5834 7454 0.590195 CAGTTGAGAGCAGCCACAAC 59.410 55.000 14.96 14.96 41.61 3.32
5835 7455 0.536006 AGTTGAGAGCAGCCACAACC 60.536 55.000 17.56 6.09 42.05 3.77
5836 7456 0.819259 GTTGAGAGCAGCCACAACCA 60.819 55.000 12.90 0.00 37.30 3.67
5837 7457 0.819259 TTGAGAGCAGCCACAACCAC 60.819 55.000 0.00 0.00 0.00 4.16
5838 7458 1.227943 GAGAGCAGCCACAACCACA 60.228 57.895 0.00 0.00 0.00 4.17
5839 7459 1.510480 GAGAGCAGCCACAACCACAC 61.510 60.000 0.00 0.00 0.00 3.82
5840 7460 2.896801 GAGCAGCCACAACCACACG 61.897 63.158 0.00 0.00 0.00 4.49
5841 7461 2.899838 GCAGCCACAACCACACGA 60.900 61.111 0.00 0.00 0.00 4.35
5842 7462 2.260869 GCAGCCACAACCACACGAT 61.261 57.895 0.00 0.00 0.00 3.73
5843 7463 1.868997 CAGCCACAACCACACGATC 59.131 57.895 0.00 0.00 0.00 3.69
5844 7464 1.302511 AGCCACAACCACACGATCC 60.303 57.895 0.00 0.00 0.00 3.36
5845 7465 1.302511 GCCACAACCACACGATCCT 60.303 57.895 0.00 0.00 0.00 3.24
5846 7466 0.036765 GCCACAACCACACGATCCTA 60.037 55.000 0.00 0.00 0.00 2.94
5847 7467 2.007049 GCCACAACCACACGATCCTAG 61.007 57.143 0.00 0.00 0.00 3.02
5848 7468 1.405526 CCACAACCACACGATCCTAGG 60.406 57.143 0.82 0.82 0.00 3.02
5849 7469 1.275291 CACAACCACACGATCCTAGGT 59.725 52.381 9.08 0.00 0.00 3.08
5850 7470 1.275291 ACAACCACACGATCCTAGGTG 59.725 52.381 9.08 1.72 39.98 4.00
5852 7472 1.144057 CCACACGATCCTAGGTGGC 59.856 63.158 9.08 0.00 43.70 5.01
5853 7473 1.226974 CACACGATCCTAGGTGGCG 60.227 63.158 9.08 13.13 38.46 5.69
5854 7474 1.681327 ACACGATCCTAGGTGGCGT 60.681 57.895 9.08 13.76 38.46 5.68
5855 7475 1.255667 ACACGATCCTAGGTGGCGTT 61.256 55.000 18.67 10.81 38.46 4.84
5856 7476 0.108329 CACGATCCTAGGTGGCGTTT 60.108 55.000 18.67 2.19 33.37 3.60
5857 7477 0.108329 ACGATCCTAGGTGGCGTTTG 60.108 55.000 9.08 0.00 32.02 2.93
5858 7478 0.810031 CGATCCTAGGTGGCGTTTGG 60.810 60.000 9.08 0.00 35.26 3.28
5859 7479 0.252197 GATCCTAGGTGGCGTTTGGT 59.748 55.000 9.08 0.00 35.26 3.67
5860 7480 0.696501 ATCCTAGGTGGCGTTTGGTT 59.303 50.000 9.08 0.00 35.26 3.67
5861 7481 1.350071 TCCTAGGTGGCGTTTGGTTA 58.650 50.000 9.08 0.00 35.26 2.85
5862 7482 1.910671 TCCTAGGTGGCGTTTGGTTAT 59.089 47.619 9.08 0.00 35.26 1.89
5863 7483 2.014128 CCTAGGTGGCGTTTGGTTATG 58.986 52.381 0.00 0.00 0.00 1.90
5864 7484 2.617021 CCTAGGTGGCGTTTGGTTATGT 60.617 50.000 0.00 0.00 0.00 2.29
5865 7485 1.243902 AGGTGGCGTTTGGTTATGTG 58.756 50.000 0.00 0.00 0.00 3.21
5866 7486 0.242555 GGTGGCGTTTGGTTATGTGG 59.757 55.000 0.00 0.00 0.00 4.17
5867 7487 0.388006 GTGGCGTTTGGTTATGTGGC 60.388 55.000 0.00 0.00 0.00 5.01
5868 7488 1.214325 GGCGTTTGGTTATGTGGCC 59.786 57.895 0.00 0.00 0.00 5.36
5869 7489 1.528292 GGCGTTTGGTTATGTGGCCA 61.528 55.000 0.00 0.00 38.88 5.36
5870 7490 0.530288 GCGTTTGGTTATGTGGCCAT 59.470 50.000 9.72 0.00 34.37 4.40
5871 7491 1.469079 GCGTTTGGTTATGTGGCCATC 60.469 52.381 9.72 3.12 34.37 3.51
5872 7492 1.134175 CGTTTGGTTATGTGGCCATCC 59.866 52.381 9.72 7.80 34.37 3.51
5873 7493 2.175202 GTTTGGTTATGTGGCCATCCA 58.825 47.619 9.72 10.47 40.85 3.41
5881 7501 4.692041 TGGCCATCCACCCTGGGA 62.692 66.667 22.23 0.00 42.21 4.37
5882 7502 4.129148 GGCCATCCACCCTGGGAC 62.129 72.222 22.23 0.00 40.44 4.46
5883 7503 3.338250 GCCATCCACCCTGGGACA 61.338 66.667 22.23 2.25 40.44 4.02
5894 7514 2.693660 TGGGACAGGGATAGCCGA 59.306 61.111 0.00 0.00 33.83 5.54
5895 7515 1.235989 TGGGACAGGGATAGCCGAT 59.764 57.895 0.00 0.00 33.83 4.18
5896 7516 0.399949 TGGGACAGGGATAGCCGATT 60.400 55.000 0.00 0.00 33.83 3.34
5897 7517 0.765510 GGGACAGGGATAGCCGATTT 59.234 55.000 0.00 0.00 33.83 2.17
5898 7518 1.143073 GGGACAGGGATAGCCGATTTT 59.857 52.381 0.00 0.00 33.83 1.82
5899 7519 2.422945 GGGACAGGGATAGCCGATTTTT 60.423 50.000 0.00 0.00 33.83 1.94
5900 7520 2.879026 GGACAGGGATAGCCGATTTTTC 59.121 50.000 0.00 0.00 33.83 2.29
5901 7521 3.433740 GGACAGGGATAGCCGATTTTTCT 60.434 47.826 0.00 0.00 33.83 2.52
5902 7522 3.545703 ACAGGGATAGCCGATTTTTCTG 58.454 45.455 0.00 0.00 33.83 3.02
5903 7523 2.880890 CAGGGATAGCCGATTTTTCTGG 59.119 50.000 0.00 0.00 33.83 3.86
5904 7524 2.158608 AGGGATAGCCGATTTTTCTGGG 60.159 50.000 0.00 0.00 33.83 4.45
5905 7525 2.230660 GGATAGCCGATTTTTCTGGGG 58.769 52.381 0.00 0.00 0.00 4.96
5906 7526 2.158667 GGATAGCCGATTTTTCTGGGGA 60.159 50.000 0.00 0.00 0.00 4.81
5907 7527 3.498661 GGATAGCCGATTTTTCTGGGGAT 60.499 47.826 0.00 0.00 0.00 3.85
5908 7528 1.767759 AGCCGATTTTTCTGGGGATG 58.232 50.000 0.00 0.00 0.00 3.51
5909 7529 0.103026 GCCGATTTTTCTGGGGATGC 59.897 55.000 0.00 0.00 0.00 3.91
5910 7530 0.746659 CCGATTTTTCTGGGGATGCC 59.253 55.000 0.00 0.00 0.00 4.40
5911 7531 1.473258 CGATTTTTCTGGGGATGCCA 58.527 50.000 5.30 0.00 0.00 4.92
5912 7532 1.134946 CGATTTTTCTGGGGATGCCAC 59.865 52.381 5.30 0.00 0.00 5.01
5913 7533 1.482182 GATTTTTCTGGGGATGCCACC 59.518 52.381 5.30 0.00 0.00 4.61
5920 7540 3.068064 GGGATGCCACCCGTTTGG 61.068 66.667 0.00 0.00 40.49 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.248086 AAACTATGACCCCCGTCGGC 62.248 60.000 5.50 0.00 42.37 5.54
1 2 0.251073 AAAACTATGACCCCCGTCGG 59.749 55.000 3.60 3.60 42.37 4.79
2 3 1.066716 TCAAAACTATGACCCCCGTCG 60.067 52.381 0.00 0.00 42.37 5.12
3 4 2.773993 TCAAAACTATGACCCCCGTC 57.226 50.000 0.00 0.00 39.66 4.79
4 5 3.732048 AATCAAAACTATGACCCCCGT 57.268 42.857 0.00 0.00 30.82 5.28
5 6 6.709018 AATAAATCAAAACTATGACCCCCG 57.291 37.500 0.00 0.00 30.82 5.73
30 31 7.362229 CGGAAACTATAGTACCCAATGCAAAAA 60.362 37.037 18.23 0.00 0.00 1.94
31 32 6.094325 CGGAAACTATAGTACCCAATGCAAAA 59.906 38.462 18.23 0.00 0.00 2.44
32 33 5.587043 CGGAAACTATAGTACCCAATGCAAA 59.413 40.000 18.23 0.00 0.00 3.68
33 34 5.104859 TCGGAAACTATAGTACCCAATGCAA 60.105 40.000 18.23 0.86 0.00 4.08
34 35 4.406326 TCGGAAACTATAGTACCCAATGCA 59.594 41.667 18.23 0.00 0.00 3.96
35 36 4.952460 TCGGAAACTATAGTACCCAATGC 58.048 43.478 18.23 0.00 0.00 3.56
36 37 8.342634 CAAATTCGGAAACTATAGTACCCAATG 58.657 37.037 18.23 8.71 0.00 2.82
37 38 7.012989 GCAAATTCGGAAACTATAGTACCCAAT 59.987 37.037 18.23 15.32 0.00 3.16
38 39 6.316890 GCAAATTCGGAAACTATAGTACCCAA 59.683 38.462 18.23 14.14 0.00 4.12
39 40 5.818857 GCAAATTCGGAAACTATAGTACCCA 59.181 40.000 18.23 7.82 0.00 4.51
40 41 6.053650 AGCAAATTCGGAAACTATAGTACCC 58.946 40.000 17.73 14.77 0.00 3.69
41 42 8.828688 ATAGCAAATTCGGAAACTATAGTACC 57.171 34.615 5.65 11.68 0.00 3.34
91 92 6.222389 TCAATCAAGCATCAAACCGATTTTT 58.778 32.000 0.00 0.00 29.21 1.94
92 93 5.782047 TCAATCAAGCATCAAACCGATTTT 58.218 33.333 0.00 0.00 29.21 1.82
93 94 5.389859 TCAATCAAGCATCAAACCGATTT 57.610 34.783 0.00 0.00 29.21 2.17
94 95 5.389859 TTCAATCAAGCATCAAACCGATT 57.610 34.783 0.00 0.00 29.21 3.34
95 96 5.163513 GTTTCAATCAAGCATCAAACCGAT 58.836 37.500 0.00 0.00 33.27 4.18
96 97 4.037327 TGTTTCAATCAAGCATCAAACCGA 59.963 37.500 0.00 0.00 0.00 4.69
97 98 4.297510 TGTTTCAATCAAGCATCAAACCG 58.702 39.130 0.00 0.00 0.00 4.44
98 99 5.927689 TCATGTTTCAATCAAGCATCAAACC 59.072 36.000 0.00 0.00 33.87 3.27
99 100 7.544566 AGATCATGTTTCAATCAAGCATCAAAC 59.455 33.333 0.00 0.00 33.87 2.93
100 101 7.608153 AGATCATGTTTCAATCAAGCATCAAA 58.392 30.769 0.00 0.00 33.87 2.69
101 102 7.165460 AGATCATGTTTCAATCAAGCATCAA 57.835 32.000 0.00 0.00 33.87 2.57
102 103 6.769134 AGATCATGTTTCAATCAAGCATCA 57.231 33.333 0.00 0.00 33.87 3.07
103 104 9.577110 TTAAAGATCATGTTTCAATCAAGCATC 57.423 29.630 0.00 0.00 33.87 3.91
105 106 9.932207 AATTAAAGATCATGTTTCAATCAAGCA 57.068 25.926 0.00 0.00 0.00 3.91
118 119 9.688592 GGAAGGCATTAAGAATTAAAGATCATG 57.311 33.333 0.00 0.00 44.76 3.07
119 120 8.864087 GGGAAGGCATTAAGAATTAAAGATCAT 58.136 33.333 0.00 0.00 44.76 2.45
120 121 7.287696 GGGGAAGGCATTAAGAATTAAAGATCA 59.712 37.037 0.00 0.00 44.76 2.92
121 122 7.507277 AGGGGAAGGCATTAAGAATTAAAGATC 59.493 37.037 0.00 0.00 44.76 2.75
122 123 7.365426 AGGGGAAGGCATTAAGAATTAAAGAT 58.635 34.615 0.00 0.00 44.76 2.40
123 124 6.741724 AGGGGAAGGCATTAAGAATTAAAGA 58.258 36.000 0.00 0.00 44.76 2.52
124 125 7.423844 AAGGGGAAGGCATTAAGAATTAAAG 57.576 36.000 0.00 0.00 44.76 1.85
125 126 7.093068 GGAAAGGGGAAGGCATTAAGAATTAAA 60.093 37.037 0.00 0.00 44.76 1.52
126 127 6.382859 GGAAAGGGGAAGGCATTAAGAATTAA 59.617 38.462 0.00 0.00 45.80 1.40
127 128 5.897250 GGAAAGGGGAAGGCATTAAGAATTA 59.103 40.000 0.00 0.00 0.00 1.40
128 129 4.716784 GGAAAGGGGAAGGCATTAAGAATT 59.283 41.667 0.00 0.00 0.00 2.17
129 130 4.264804 TGGAAAGGGGAAGGCATTAAGAAT 60.265 41.667 0.00 0.00 0.00 2.40
130 131 3.076785 TGGAAAGGGGAAGGCATTAAGAA 59.923 43.478 0.00 0.00 0.00 2.52
131 132 2.652348 TGGAAAGGGGAAGGCATTAAGA 59.348 45.455 0.00 0.00 0.00 2.10
132 133 3.100207 TGGAAAGGGGAAGGCATTAAG 57.900 47.619 0.00 0.00 0.00 1.85
133 134 3.245948 ACATGGAAAGGGGAAGGCATTAA 60.246 43.478 0.00 0.00 0.00 1.40
134 135 2.314549 ACATGGAAAGGGGAAGGCATTA 59.685 45.455 0.00 0.00 0.00 1.90
135 136 1.079323 ACATGGAAAGGGGAAGGCATT 59.921 47.619 0.00 0.00 0.00 3.56
136 137 0.712380 ACATGGAAAGGGGAAGGCAT 59.288 50.000 0.00 0.00 0.00 4.40
137 138 0.486879 AACATGGAAAGGGGAAGGCA 59.513 50.000 0.00 0.00 0.00 4.75
138 139 0.897621 CAACATGGAAAGGGGAAGGC 59.102 55.000 0.00 0.00 0.00 4.35
139 140 2.309136 ACAACATGGAAAGGGGAAGG 57.691 50.000 0.00 0.00 0.00 3.46
140 141 3.006859 GGAAACAACATGGAAAGGGGAAG 59.993 47.826 0.00 0.00 0.00 3.46
141 142 2.969262 GGAAACAACATGGAAAGGGGAA 59.031 45.455 0.00 0.00 0.00 3.97
142 143 2.604139 GGAAACAACATGGAAAGGGGA 58.396 47.619 0.00 0.00 0.00 4.81
143 144 1.623311 GGGAAACAACATGGAAAGGGG 59.377 52.381 0.00 0.00 0.00 4.79
144 145 2.608623 AGGGAAACAACATGGAAAGGG 58.391 47.619 0.00 0.00 0.00 3.95
145 146 5.799827 TTAAGGGAAACAACATGGAAAGG 57.200 39.130 0.00 0.00 0.00 3.11
146 147 9.423061 CTAAATTAAGGGAAACAACATGGAAAG 57.577 33.333 0.00 0.00 0.00 2.62
147 148 8.929487 ACTAAATTAAGGGAAACAACATGGAAA 58.071 29.630 0.00 0.00 0.00 3.13
148 149 8.485578 ACTAAATTAAGGGAAACAACATGGAA 57.514 30.769 0.00 0.00 0.00 3.53
149 150 9.589461 TTACTAAATTAAGGGAAACAACATGGA 57.411 29.630 0.00 0.00 0.00 3.41
171 172 8.725148 CACATTTAAGTTCTCTGCAGAATTACT 58.275 33.333 18.85 16.85 40.88 2.24
224 227 3.242248 CGCACGGTCATTTAGCTACTTAC 59.758 47.826 0.00 0.00 0.00 2.34
230 233 0.796312 CAACGCACGGTCATTTAGCT 59.204 50.000 0.00 0.00 0.00 3.32
395 398 5.256474 CCCTATGTTCCAAAGATCTGTGTT 58.744 41.667 12.03 0.00 0.00 3.32
420 423 1.066716 CCCATTTGAGGTGCATTGGTG 60.067 52.381 0.00 0.00 31.50 4.17
421 424 1.203162 TCCCATTTGAGGTGCATTGGT 60.203 47.619 0.00 0.00 31.50 3.67
455 458 9.450807 TCAGAAAATTTCGACTCTTTGATTTTC 57.549 29.630 9.96 9.96 40.82 2.29
508 513 8.846943 TGAAACTGTTCACATGAGTATTATGT 57.153 30.769 0.00 0.00 38.88 2.29
523 528 3.186613 GTCATTCCTCCGTGAAACTGTTC 59.813 47.826 0.00 0.00 31.75 3.18
526 531 2.996621 GAGTCATTCCTCCGTGAAACTG 59.003 50.000 0.00 0.00 31.75 3.16
530 535 1.254026 ACGAGTCATTCCTCCGTGAA 58.746 50.000 0.00 0.00 0.00 3.18
534 539 2.933495 TACAACGAGTCATTCCTCCG 57.067 50.000 0.00 0.00 0.00 4.63
535 540 4.806247 CAGAATACAACGAGTCATTCCTCC 59.194 45.833 0.00 0.00 0.00 4.30
603 613 4.901866 AATTTGCGATTACAAAAAGCCG 57.098 36.364 0.00 0.00 42.45 5.52
606 616 9.701355 AGAAAACAAATTTGCGATTACAAAAAG 57.299 25.926 18.12 0.00 42.45 2.27
635 645 1.668101 GCTTCGACCGACTCCAGGAT 61.668 60.000 0.00 0.00 0.00 3.24
636 646 2.341101 GCTTCGACCGACTCCAGGA 61.341 63.158 0.00 0.00 0.00 3.86
642 652 1.765230 AGGAATAGCTTCGACCGACT 58.235 50.000 0.00 0.00 31.75 4.18
677 687 3.941483 ACGGAAATAGCCAATGAGTCTTG 59.059 43.478 0.00 0.00 0.00 3.02
683 693 5.913137 ATTGAAACGGAAATAGCCAATGA 57.087 34.783 0.00 0.00 0.00 2.57
790 801 4.275689 CGGATCATATTGCAGCTGGTAAAA 59.724 41.667 17.12 0.00 0.00 1.52
827 1684 4.771356 CGACCACGACGGCGATGT 62.771 66.667 22.49 14.71 42.66 3.06
833 1690 0.799534 GGTATTCACGACCACGACGG 60.800 60.000 0.00 0.00 42.66 4.79
834 1691 0.799534 GGGTATTCACGACCACGACG 60.800 60.000 0.00 0.00 42.66 5.12
841 1698 9.088512 GATATCTTAATCATGGGTATTCACGAC 57.911 37.037 0.00 0.00 0.00 4.34
842 1699 8.811994 TGATATCTTAATCATGGGTATTCACGA 58.188 33.333 3.98 0.00 30.92 4.35
843 1700 9.605275 ATGATATCTTAATCATGGGTATTCACG 57.395 33.333 3.98 0.00 43.39 4.35
849 1706 8.486210 GCCACTATGATATCTTAATCATGGGTA 58.514 37.037 12.79 0.00 44.67 3.69
850 1707 7.183475 AGCCACTATGATATCTTAATCATGGGT 59.817 37.037 12.79 9.52 44.67 4.51
851 1708 7.498239 CAGCCACTATGATATCTTAATCATGGG 59.502 40.741 12.79 10.44 44.67 4.00
852 1709 8.045507 ACAGCCACTATGATATCTTAATCATGG 58.954 37.037 3.98 8.63 44.43 3.66
853 1710 9.445878 AACAGCCACTATGATATCTTAATCATG 57.554 33.333 3.98 0.00 44.43 3.07
854 1711 9.445878 CAACAGCCACTATGATATCTTAATCAT 57.554 33.333 3.98 4.86 46.05 2.45
855 1712 8.432013 ACAACAGCCACTATGATATCTTAATCA 58.568 33.333 3.98 0.00 40.07 2.57
856 1713 8.839310 ACAACAGCCACTATGATATCTTAATC 57.161 34.615 3.98 0.00 0.00 1.75
894 1754 9.609346 GTTACTATTCTATAGCCAACTTGGAAA 57.391 33.333 12.37 0.00 40.96 3.13
906 1766 9.678941 TTGTCTCATTGCGTTACTATTCTATAG 57.321 33.333 0.00 0.00 0.00 1.31
921 1783 7.157347 TCATATACCATCTCTTGTCTCATTGC 58.843 38.462 0.00 0.00 0.00 3.56
925 1787 9.770097 GAATTTCATATACCATCTCTTGTCTCA 57.230 33.333 0.00 0.00 0.00 3.27
936 1821 5.224888 ACGCGTACGAATTTCATATACCAT 58.775 37.500 21.65 0.00 43.93 3.55
966 1855 3.328931 AGAATCACAGAGACAACCACCAT 59.671 43.478 0.00 0.00 0.00 3.55
1017 1906 5.574188 AGCTCTAAATGTTGTCTGGGAAAT 58.426 37.500 0.00 0.00 0.00 2.17
1018 1907 4.985538 AGCTCTAAATGTTGTCTGGGAAA 58.014 39.130 0.00 0.00 0.00 3.13
1019 1908 4.640771 AGCTCTAAATGTTGTCTGGGAA 57.359 40.909 0.00 0.00 0.00 3.97
1020 1909 5.755409 TTAGCTCTAAATGTTGTCTGGGA 57.245 39.130 0.00 0.00 0.00 4.37
1021 1910 6.817765 TTTTAGCTCTAAATGTTGTCTGGG 57.182 37.500 0.00 0.00 35.27 4.45
1042 1931 8.871125 TCCTCTATCAAGTGTTCTAGTCTTTTT 58.129 33.333 0.00 0.00 0.00 1.94
1043 1932 8.423906 TCCTCTATCAAGTGTTCTAGTCTTTT 57.576 34.615 0.00 0.00 0.00 2.27
1044 1933 7.891183 TCTCCTCTATCAAGTGTTCTAGTCTTT 59.109 37.037 0.00 0.00 0.00 2.52
1073 1962 1.949525 TCTGTTGAACCAAGCAGCTTC 59.050 47.619 4.07 0.00 0.00 3.86
1087 1976 0.957395 ATCCTGCTTGCGGTCTGTTG 60.957 55.000 0.54 0.00 0.00 3.33
1167 2068 1.363744 GGAGTGCATCCTTCAAGACG 58.636 55.000 7.65 0.00 45.64 4.18
1209 2110 2.613506 CGTTGGCCGTTCAAGGTCC 61.614 63.158 0.00 0.00 34.30 4.46
1376 2277 4.521146 CCAGAAATCAGCCTTGTGTAGAT 58.479 43.478 0.00 0.00 0.00 1.98
1383 2284 2.205022 TGACCCAGAAATCAGCCTTG 57.795 50.000 0.00 0.00 0.00 3.61
1445 2609 2.032620 TCATAAGAAGAGGGCGAGGAC 58.967 52.381 0.00 0.00 0.00 3.85
1482 2646 4.602340 ACTGGACCTGTTTGTAGTACAG 57.398 45.455 2.68 0.09 46.11 2.74
1497 2661 5.246307 ACAGAGGCAAACTAATTACTGGAC 58.754 41.667 0.00 0.00 0.00 4.02
1584 2758 1.106285 GCCCAATTCGAGGAATGCTT 58.894 50.000 0.00 0.00 32.14 3.91
1631 2805 2.266055 GCCAGTCAGGGGTCTTCG 59.734 66.667 0.00 0.00 38.09 3.79
1639 2813 2.743928 GTTGCTCGGCCAGTCAGG 60.744 66.667 2.24 0.00 41.84 3.86
1666 2840 4.210120 GCCAGCATGAGATAGTAAACGAAG 59.790 45.833 0.00 0.00 39.69 3.79
1802 2976 1.079750 GTCTCGACAGGAGGGCAAC 60.080 63.158 0.00 0.00 43.34 4.17
1808 2982 1.537776 GCCATGATGTCTCGACAGGAG 60.538 57.143 5.91 0.00 45.48 3.69
1822 2996 4.558178 GAAACACATTGTCATTGCCATGA 58.442 39.130 0.00 0.00 37.05 3.07
1827 3001 2.153627 GCACGAAACACATTGTCATTGC 59.846 45.455 0.00 0.00 0.00 3.56
1832 3006 2.031560 TGAGTGCACGAAACACATTGTC 59.968 45.455 12.01 0.00 40.59 3.18
1833 3007 2.013400 TGAGTGCACGAAACACATTGT 58.987 42.857 12.01 0.00 40.59 2.71
1916 3090 6.092122 TGGTTTGCAAGATAAGAACGATACAG 59.908 38.462 0.00 0.00 0.00 2.74
1998 3172 1.661509 GCCGTGCTCAAGGTTTTGC 60.662 57.895 3.93 0.00 34.21 3.68
2221 3395 1.069636 GTGCGGCTCTTTGAGTTTGAG 60.070 52.381 0.00 0.00 31.39 3.02
2222 3396 0.944386 GTGCGGCTCTTTGAGTTTGA 59.056 50.000 0.00 0.00 31.39 2.69
2223 3397 0.947244 AGTGCGGCTCTTTGAGTTTG 59.053 50.000 0.00 0.00 31.39 2.93
2224 3398 0.947244 CAGTGCGGCTCTTTGAGTTT 59.053 50.000 1.10 0.00 31.39 2.66
2225 3399 0.106708 TCAGTGCGGCTCTTTGAGTT 59.893 50.000 1.10 0.00 31.39 3.01
2226 3400 0.322975 ATCAGTGCGGCTCTTTGAGT 59.677 50.000 1.10 0.00 31.39 3.41
2256 3430 4.678287 CCACAATTTCTGCGATGCATATTC 59.322 41.667 0.00 0.00 38.13 1.75
2335 3509 6.776887 AAGTAGGGATCAATCATGGAAGAT 57.223 37.500 0.00 0.00 0.00 2.40
2370 3544 7.555387 ATGTTGACATTGGTAGCTGGTGCTA 62.555 44.000 0.00 0.00 41.12 3.49
2372 3546 1.200020 GTTGACATTGGTAGCTGGTGC 59.800 52.381 0.00 0.00 40.05 5.01
2397 3571 2.910199 TGTCAATAGCTGTCTGATGGC 58.090 47.619 0.00 0.00 0.00 4.40
2459 3633 2.681976 CGATGCTTTCTCCTCCATTGGT 60.682 50.000 1.86 0.00 0.00 3.67
2495 3669 9.125026 AGCTACCATGTCCATTAATTTCTTAAG 57.875 33.333 0.00 0.00 30.61 1.85
2501 3675 4.821805 CGGAGCTACCATGTCCATTAATTT 59.178 41.667 0.00 0.00 38.90 1.82
2527 3701 8.260114 TGTCTATTTCTGATGAATTCTGCAGTA 58.740 33.333 14.67 4.08 31.56 2.74
2529 3703 7.549615 TGTCTATTTCTGATGAATTCTGCAG 57.450 36.000 7.63 7.63 31.56 4.41
2530 3704 6.037940 GCTGTCTATTTCTGATGAATTCTGCA 59.962 38.462 7.05 4.01 31.56 4.41
2537 3711 7.663081 AGTTTCTTGCTGTCTATTTCTGATGAA 59.337 33.333 0.00 0.00 0.00 2.57
2558 3732 2.880963 CTGGAGGATCGAGGAGTTTC 57.119 55.000 0.00 0.00 37.29 2.78
2718 3892 7.815840 TCTCTGAGGATCTCATACACTTTAG 57.184 40.000 4.59 0.00 39.92 1.85
2820 3994 6.018994 ACAAATATCTCGGCGTATCTTTTCAC 60.019 38.462 6.85 0.00 0.00 3.18
2863 4037 5.748402 TCCAAGATTGAGCAGATATGTTGT 58.252 37.500 0.00 0.00 0.00 3.32
2866 4040 6.320672 CCTTTTCCAAGATTGAGCAGATATGT 59.679 38.462 0.00 0.00 30.57 2.29
2867 4041 6.544931 TCCTTTTCCAAGATTGAGCAGATATG 59.455 38.462 0.00 0.00 30.57 1.78
2872 4046 3.192212 GGTCCTTTTCCAAGATTGAGCAG 59.808 47.826 0.00 0.00 30.57 4.24
2903 4077 2.944129 TGCTGGAACCTTTAGCTTGTT 58.056 42.857 0.00 0.00 38.25 2.83
2935 4109 5.511545 GGACGTATCCAAAGATAGCTCCATT 60.512 44.000 0.00 0.00 45.47 3.16
2937 4111 3.321111 GGACGTATCCAAAGATAGCTCCA 59.679 47.826 0.00 0.00 45.47 3.86
3004 4178 5.868454 TCAAAGAAGATGTCCATCAAGTCA 58.132 37.500 9.76 0.00 40.22 3.41
3044 4218 2.478134 CTGCGGTCTTCTTGAGTTCTTG 59.522 50.000 0.00 0.00 0.00 3.02
3117 4291 4.997905 TTTGTCTCTGAGCTGAAATTCG 57.002 40.909 0.00 0.00 0.00 3.34
3128 4302 5.065218 GCTGAACTGAAGTTTTTGTCTCTGA 59.935 40.000 0.00 0.00 38.56 3.27
3182 4356 7.824289 TGCTATGGTAGTTTGATATAATCTGGC 59.176 37.037 0.00 0.00 0.00 4.85
3282 4456 7.956328 ACATGTACTCTTACCTCATGTAGAA 57.044 36.000 0.00 0.00 44.37 2.10
3502 4676 9.326413 CCTAGTTCAAGAAAAAGTCTACTGAAA 57.674 33.333 0.00 0.00 35.71 2.69
3520 4694 7.399191 ACTTGGATACTACATCAACCTAGTTCA 59.601 37.037 0.00 0.00 31.87 3.18
3542 4716 4.794248 TCGTTGTGTCAGATCAAACTTG 57.206 40.909 0.00 0.00 0.00 3.16
3574 4748 3.088532 TGGCACACCACAATAAAGATCC 58.911 45.455 0.00 0.00 42.67 3.36
3616 4790 8.138712 ACTTCTATAGATCTTTGGACATTCGAC 58.861 37.037 0.00 0.00 0.00 4.20
3630 4804 5.707764 GCCCCCATTTGAACTTCTATAGATC 59.292 44.000 2.58 0.00 0.00 2.75
3636 4810 3.371595 GCTAGCCCCCATTTGAACTTCTA 60.372 47.826 2.29 0.00 0.00 2.10
3641 4815 1.780503 ATGCTAGCCCCCATTTGAAC 58.219 50.000 13.29 0.00 0.00 3.18
3669 4843 4.456535 TGAACTTTCAGATTCCGTTTGGA 58.543 39.130 0.00 0.00 36.09 3.53
3700 4874 6.391227 AACACGTGAAGAAAAGAAATCCAT 57.609 33.333 25.01 0.00 0.00 3.41
3701 4875 5.828299 AACACGTGAAGAAAAGAAATCCA 57.172 34.783 25.01 0.00 0.00 3.41
3702 4876 6.019881 CCAAAACACGTGAAGAAAAGAAATCC 60.020 38.462 25.01 0.00 0.00 3.01
3703 4877 6.750039 TCCAAAACACGTGAAGAAAAGAAATC 59.250 34.615 25.01 0.00 0.00 2.17
3704 4878 6.530181 GTCCAAAACACGTGAAGAAAAGAAAT 59.470 34.615 25.01 0.00 0.00 2.17
3708 4882 4.728534 TGTCCAAAACACGTGAAGAAAAG 58.271 39.130 25.01 4.55 31.20 2.27
3717 4891 1.674359 TGCATCTGTCCAAAACACGT 58.326 45.000 0.00 0.00 33.24 4.49
3730 4904 1.001020 TCCCGTTTGGCATGCATCT 60.001 52.632 21.36 0.00 0.00 2.90
3747 4921 2.223409 GGTCCCAACGAACTTTTGTGTC 60.223 50.000 0.00 0.00 0.00 3.67
3772 4946 4.473196 TGGGATTTCTGCTTATGGAGTACA 59.527 41.667 0.00 0.00 33.13 2.90
3783 4957 4.531732 TGCCTTTTTATTGGGATTTCTGCT 59.468 37.500 0.00 0.00 0.00 4.24
3895 5158 1.880027 GGGGAAATGGTCGTGCATATC 59.120 52.381 0.00 0.00 0.00 1.63
3912 5175 6.630071 CAATGTTACATCAAGTAAAAGGGGG 58.370 40.000 0.00 0.00 43.90 5.40
3913 5176 6.071391 AGCAATGTTACATCAAGTAAAAGGGG 60.071 38.462 0.00 0.00 43.90 4.79
3914 5177 6.808212 CAGCAATGTTACATCAAGTAAAAGGG 59.192 38.462 0.00 0.00 43.90 3.95
3950 5213 6.428083 TCTAAGAACAAAGGGTACATGTGA 57.572 37.500 9.11 0.00 0.00 3.58
3957 5220 8.445361 ACCTCTTATTCTAAGAACAAAGGGTA 57.555 34.615 0.00 0.00 0.00 3.69
3959 5222 8.637196 AAACCTCTTATTCTAAGAACAAAGGG 57.363 34.615 0.00 0.00 0.00 3.95
4013 5277 7.165485 TGTTGCATATAACTTTGAGTACCTGT 58.835 34.615 0.00 0.00 0.00 4.00
4019 5283 8.575589 TGTTCAATGTTGCATATAACTTTGAGT 58.424 29.630 13.86 0.00 46.28 3.41
4051 5315 3.007182 AGAACCCACCTGATTTGCATTTG 59.993 43.478 0.00 0.00 0.00 2.32
4076 5340 1.454479 CTGGCCCAGGTTATGCTGG 60.454 63.158 1.63 0.00 40.28 4.85
4082 5346 0.539438 CTTGTTGCTGGCCCAGGTTA 60.539 55.000 13.78 0.00 31.21 2.85
4086 5350 2.913578 TGCTTGTTGCTGGCCCAG 60.914 61.111 6.32 6.32 43.37 4.45
4088 5352 4.368543 GCTGCTTGTTGCTGGCCC 62.369 66.667 0.00 0.00 43.37 5.80
4144 5408 1.952635 GTTGCTGCTTGTTGCTGGC 60.953 57.895 0.00 0.00 43.37 4.85
4162 5426 1.644786 GGAACCCGTCTGATTTGCGG 61.645 60.000 0.00 0.00 44.55 5.69
4163 5427 1.794222 GGAACCCGTCTGATTTGCG 59.206 57.895 0.00 0.00 0.00 4.85
4181 5451 1.758122 GCCTTGGTTATGCTGGGGG 60.758 63.158 0.00 0.00 0.00 5.40
4195 5465 2.864471 GCTGCTTGTTGCTGGCCTT 61.864 57.895 3.32 0.00 43.37 4.35
4196 5466 3.300765 GCTGCTTGTTGCTGGCCT 61.301 61.111 3.32 0.00 43.37 5.19
4336 5609 1.608590 AGTTTTGCTGTGGTGAATCCG 59.391 47.619 0.00 0.00 39.52 4.18
4339 5612 1.688197 CCCAGTTTTGCTGTGGTGAAT 59.312 47.619 0.00 0.00 43.55 2.57
4343 5616 2.133641 GCCCCAGTTTTGCTGTGGT 61.134 57.895 0.00 0.00 43.52 4.16
4673 6000 6.678568 ATTATCAGATACTCAACTGAGGGG 57.321 41.667 11.31 0.00 46.13 4.79
4680 6007 9.494271 TGCCTTGATTATTATCAGATACTCAAC 57.506 33.333 0.00 0.00 41.60 3.18
4704 6031 5.411361 TCCATGTACATAACTTTGTCACTGC 59.589 40.000 8.32 0.00 0.00 4.40
4734 6061 0.886563 ATGCAGTCTGGCTTGCTTTC 59.113 50.000 1.14 0.00 34.04 2.62
4766 6093 6.092748 CAGTTTTGTGCTAGTGTTCTTGTTT 58.907 36.000 0.00 0.00 0.00 2.83
4951 6278 6.553953 AAAGAAAACCCCACACTTGTAATT 57.446 33.333 0.00 0.00 0.00 1.40
4980 6310 8.293157 GGAGAAAACAATTCTCTGAAAAGTAGG 58.707 37.037 15.51 0.00 43.28 3.18
5017 6347 5.352284 AGCTATCTTGATTCTTACACGTGG 58.648 41.667 21.57 1.74 0.00 4.94
5051 6382 4.879545 GCAGATTGTAAACCGGGAAGATAA 59.120 41.667 6.32 0.00 0.00 1.75
5103 6434 5.519927 GCTATTTGACAAACACAGCAAAAGT 59.480 36.000 18.91 0.00 34.38 2.66
5145 6476 0.672401 AGTTCGGTACCACAATGCGG 60.672 55.000 13.54 0.00 0.00 5.69
5175 6506 7.472543 ACAAAAGTCTACAACACAAATCTGAC 58.527 34.615 0.00 0.00 0.00 3.51
5243 6850 7.944729 TGCTCTTGCTTAATATTCTTTCCTT 57.055 32.000 0.00 0.00 40.48 3.36
5244 6851 7.944729 TTGCTCTTGCTTAATATTCTTTCCT 57.055 32.000 0.00 0.00 40.48 3.36
5265 6874 4.266502 TGCAACGTGTGTTCTTAATTTTGC 59.733 37.500 0.00 0.00 35.72 3.68
5269 6878 3.378742 TGGTGCAACGTGTGTTCTTAATT 59.621 39.130 0.00 0.00 38.12 1.40
5278 6887 0.172352 AAAACCTGGTGCAACGTGTG 59.828 50.000 0.00 0.00 38.12 3.82
5279 6888 1.673920 CTAAAACCTGGTGCAACGTGT 59.326 47.619 0.00 0.00 38.12 4.49
5353 6963 2.898705 TGTGGATGTTTTGTTGTTGGC 58.101 42.857 0.00 0.00 0.00 4.52
5357 6967 7.710475 CCTTCTTTTATGTGGATGTTTTGTTGT 59.290 33.333 0.00 0.00 0.00 3.32
5374 6984 5.550403 ACATGGTACCTTCTCCCTTCTTTTA 59.450 40.000 14.36 0.00 0.00 1.52
5401 7011 8.721478 TCAACTGAAGGAATTTTATTCGAAGAG 58.279 33.333 3.35 0.00 38.43 2.85
5591 7209 2.296480 GCCTCGTGCTCTTATCGCG 61.296 63.158 0.00 0.00 38.63 5.87
5740 7359 3.219928 GCCAGGAGATCGAGGCGA 61.220 66.667 0.00 0.00 41.13 5.54
5791 7411 8.600449 TGAATAGAATTTCCAAAAATGCGTTT 57.400 26.923 0.00 0.00 35.78 3.60
5804 7424 6.458070 GGCTGCTCTCAACTGAATAGAATTTC 60.458 42.308 0.00 0.00 0.00 2.17
5807 7427 4.080695 TGGCTGCTCTCAACTGAATAGAAT 60.081 41.667 0.00 0.00 0.00 2.40
5808 7428 3.261643 TGGCTGCTCTCAACTGAATAGAA 59.738 43.478 0.00 0.00 0.00 2.10
5809 7429 2.833943 TGGCTGCTCTCAACTGAATAGA 59.166 45.455 0.00 0.00 0.00 1.98
5810 7430 2.935201 GTGGCTGCTCTCAACTGAATAG 59.065 50.000 0.00 0.00 0.00 1.73
5811 7431 2.302733 TGTGGCTGCTCTCAACTGAATA 59.697 45.455 0.00 0.00 0.00 1.75
5812 7432 1.072806 TGTGGCTGCTCTCAACTGAAT 59.927 47.619 0.00 0.00 0.00 2.57
5813 7433 0.469494 TGTGGCTGCTCTCAACTGAA 59.531 50.000 0.00 0.00 0.00 3.02
5814 7434 0.469494 TTGTGGCTGCTCTCAACTGA 59.531 50.000 0.00 0.00 0.00 3.41
5815 7435 0.590195 GTTGTGGCTGCTCTCAACTG 59.410 55.000 19.40 0.00 37.67 3.16
5816 7436 0.536006 GGTTGTGGCTGCTCTCAACT 60.536 55.000 22.70 0.00 39.69 3.16
5817 7437 0.819259 TGGTTGTGGCTGCTCTCAAC 60.819 55.000 18.90 18.90 39.24 3.18
5818 7438 0.819259 GTGGTTGTGGCTGCTCTCAA 60.819 55.000 0.00 0.85 0.00 3.02
5819 7439 1.227943 GTGGTTGTGGCTGCTCTCA 60.228 57.895 0.00 0.00 0.00 3.27
5820 7440 1.227943 TGTGGTTGTGGCTGCTCTC 60.228 57.895 0.00 0.00 0.00 3.20
5821 7441 1.526917 GTGTGGTTGTGGCTGCTCT 60.527 57.895 0.00 0.00 0.00 4.09
5822 7442 2.896801 CGTGTGGTTGTGGCTGCTC 61.897 63.158 0.00 0.00 0.00 4.26
5823 7443 2.680974 ATCGTGTGGTTGTGGCTGCT 62.681 55.000 0.00 0.00 0.00 4.24
5824 7444 2.187599 GATCGTGTGGTTGTGGCTGC 62.188 60.000 0.00 0.00 0.00 5.25
5825 7445 1.577328 GGATCGTGTGGTTGTGGCTG 61.577 60.000 0.00 0.00 0.00 4.85
5826 7446 1.302511 GGATCGTGTGGTTGTGGCT 60.303 57.895 0.00 0.00 0.00 4.75
5827 7447 0.036765 TAGGATCGTGTGGTTGTGGC 60.037 55.000 0.00 0.00 0.00 5.01
5828 7448 1.405526 CCTAGGATCGTGTGGTTGTGG 60.406 57.143 1.05 0.00 0.00 4.17
5829 7449 1.275291 ACCTAGGATCGTGTGGTTGTG 59.725 52.381 17.98 0.00 0.00 3.33
5830 7450 1.275291 CACCTAGGATCGTGTGGTTGT 59.725 52.381 17.98 0.00 0.00 3.32
5831 7451 1.405526 CCACCTAGGATCGTGTGGTTG 60.406 57.143 17.98 0.00 42.61 3.77
5832 7452 0.902531 CCACCTAGGATCGTGTGGTT 59.097 55.000 17.98 0.00 42.61 3.67
5833 7453 2.591915 CCACCTAGGATCGTGTGGT 58.408 57.895 17.98 11.29 42.61 4.16
5835 7455 1.226974 CGCCACCTAGGATCGTGTG 60.227 63.158 17.98 1.22 41.22 3.82
5836 7456 1.255667 AACGCCACCTAGGATCGTGT 61.256 55.000 17.98 11.49 41.22 4.49
5837 7457 0.108329 AAACGCCACCTAGGATCGTG 60.108 55.000 17.98 10.84 41.22 4.35
5838 7458 0.108329 CAAACGCCACCTAGGATCGT 60.108 55.000 17.98 17.55 41.22 3.73
5839 7459 0.810031 CCAAACGCCACCTAGGATCG 60.810 60.000 17.98 16.90 41.22 3.69
5840 7460 0.252197 ACCAAACGCCACCTAGGATC 59.748 55.000 17.98 2.62 41.22 3.36
5841 7461 0.696501 AACCAAACGCCACCTAGGAT 59.303 50.000 17.98 0.00 41.22 3.24
5842 7462 1.350071 TAACCAAACGCCACCTAGGA 58.650 50.000 17.98 0.00 41.22 2.94
5843 7463 2.014128 CATAACCAAACGCCACCTAGG 58.986 52.381 7.41 7.41 41.84 3.02
5844 7464 2.418628 CACATAACCAAACGCCACCTAG 59.581 50.000 0.00 0.00 0.00 3.02
5845 7465 2.428491 CACATAACCAAACGCCACCTA 58.572 47.619 0.00 0.00 0.00 3.08
5846 7466 1.243902 CACATAACCAAACGCCACCT 58.756 50.000 0.00 0.00 0.00 4.00
5847 7467 0.242555 CCACATAACCAAACGCCACC 59.757 55.000 0.00 0.00 0.00 4.61
5848 7468 0.388006 GCCACATAACCAAACGCCAC 60.388 55.000 0.00 0.00 0.00 5.01
5849 7469 1.528292 GGCCACATAACCAAACGCCA 61.528 55.000 0.00 0.00 34.98 5.69
5850 7470 1.214325 GGCCACATAACCAAACGCC 59.786 57.895 0.00 0.00 0.00 5.68
5851 7471 0.530288 ATGGCCACATAACCAAACGC 59.470 50.000 8.16 0.00 39.96 4.84
5852 7472 1.134175 GGATGGCCACATAACCAAACG 59.866 52.381 8.16 0.00 39.96 3.60
5853 7473 2.175202 TGGATGGCCACATAACCAAAC 58.825 47.619 8.16 0.00 39.92 2.93
5854 7474 2.612285 TGGATGGCCACATAACCAAA 57.388 45.000 8.16 0.00 39.92 3.28
5864 7484 4.692041 TCCCAGGGTGGATGGCCA 62.692 66.667 8.56 8.56 40.96 5.36
5865 7485 4.129148 GTCCCAGGGTGGATGGCC 62.129 72.222 5.01 0.00 40.96 5.36
5866 7486 3.338250 TGTCCCAGGGTGGATGGC 61.338 66.667 5.01 0.00 40.96 4.40
5867 7487 3.001514 CTGTCCCAGGGTGGATGG 58.998 66.667 5.01 0.00 40.96 3.51
5876 7496 0.833834 ATCGGCTATCCCTGTCCCAG 60.834 60.000 0.00 0.00 0.00 4.45
5877 7497 0.399949 AATCGGCTATCCCTGTCCCA 60.400 55.000 0.00 0.00 0.00 4.37
5878 7498 0.765510 AAATCGGCTATCCCTGTCCC 59.234 55.000 0.00 0.00 0.00 4.46
5879 7499 2.640316 AAAATCGGCTATCCCTGTCC 57.360 50.000 0.00 0.00 0.00 4.02
5880 7500 3.561725 CAGAAAAATCGGCTATCCCTGTC 59.438 47.826 0.00 0.00 0.00 3.51
5881 7501 3.545703 CAGAAAAATCGGCTATCCCTGT 58.454 45.455 0.00 0.00 0.00 4.00
5882 7502 2.880890 CCAGAAAAATCGGCTATCCCTG 59.119 50.000 0.00 0.00 0.00 4.45
5883 7503 2.158608 CCCAGAAAAATCGGCTATCCCT 60.159 50.000 0.00 0.00 0.00 4.20
5884 7504 2.230660 CCCAGAAAAATCGGCTATCCC 58.769 52.381 0.00 0.00 0.00 3.85
5885 7505 2.158667 TCCCCAGAAAAATCGGCTATCC 60.159 50.000 0.00 0.00 0.00 2.59
5886 7506 3.208747 TCCCCAGAAAAATCGGCTATC 57.791 47.619 0.00 0.00 0.00 2.08
5887 7507 3.490348 CATCCCCAGAAAAATCGGCTAT 58.510 45.455 0.00 0.00 0.00 2.97
5888 7508 2.930950 CATCCCCAGAAAAATCGGCTA 58.069 47.619 0.00 0.00 0.00 3.93
5889 7509 1.767759 CATCCCCAGAAAAATCGGCT 58.232 50.000 0.00 0.00 0.00 5.52
5890 7510 0.103026 GCATCCCCAGAAAAATCGGC 59.897 55.000 0.00 0.00 0.00 5.54
5891 7511 0.746659 GGCATCCCCAGAAAAATCGG 59.253 55.000 0.00 0.00 0.00 4.18
5892 7512 1.134946 GTGGCATCCCCAGAAAAATCG 59.865 52.381 0.00 0.00 46.54 3.34
5893 7513 1.482182 GGTGGCATCCCCAGAAAAATC 59.518 52.381 0.00 0.00 46.54 2.17
5894 7514 1.571955 GGTGGCATCCCCAGAAAAAT 58.428 50.000 0.00 0.00 46.54 1.82
5895 7515 0.544120 GGGTGGCATCCCCAGAAAAA 60.544 55.000 5.14 0.00 46.54 1.94
5896 7516 1.078347 GGGTGGCATCCCCAGAAAA 59.922 57.895 5.14 0.00 46.54 2.29
5897 7517 2.770130 GGGTGGCATCCCCAGAAA 59.230 61.111 5.14 0.00 46.54 2.52
5898 7518 3.727258 CGGGTGGCATCCCCAGAA 61.727 66.667 12.10 0.00 46.54 3.02
5900 7520 3.583882 AAACGGGTGGCATCCCCAG 62.584 63.158 12.10 7.27 46.54 4.45
5901 7521 3.585428 AAACGGGTGGCATCCCCA 61.585 61.111 12.10 0.00 44.32 4.96
5902 7522 3.068064 CAAACGGGTGGCATCCCC 61.068 66.667 12.10 7.21 44.32 4.81
5903 7523 3.068064 CCAAACGGGTGGCATCCC 61.068 66.667 12.10 12.82 43.78 3.85
5912 7532 2.561037 GGCTGGTCAACCAAACGGG 61.561 63.158 3.03 0.00 46.97 5.28
5913 7533 1.826054 TGGCTGGTCAACCAAACGG 60.826 57.895 3.03 0.00 46.97 4.44
5914 7534 3.834726 TGGCTGGTCAACCAAACG 58.165 55.556 3.03 0.00 46.97 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.