Multiple sequence alignment - TraesCS5B01G493700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G493700 chr5B 100.000 2951 0 0 1 2951 661611172 661614122 0.000000e+00 5450.0
1 TraesCS5B01G493700 chr5B 88.043 1221 106 18 791 2002 661525133 661523944 0.000000e+00 1410.0
2 TraesCS5B01G493700 chr5B 88.732 71 8 0 2716 2786 507864155 507864225 1.460000e-13 87.9
3 TraesCS5B01G493700 chr5D 87.763 1945 136 45 275 2192 526431758 526433627 0.000000e+00 2180.0
4 TraesCS5B01G493700 chr5D 83.787 1727 147 67 355 2015 526411902 526410243 0.000000e+00 1515.0
5 TraesCS5B01G493700 chr5D 92.841 433 28 1 1507 1936 526422496 526422928 2.500000e-175 625.0
6 TraesCS5B01G493700 chr5D 92.045 176 12 2 105 279 413571539 413571713 2.270000e-61 246.0
7 TraesCS5B01G493700 chr5D 96.610 59 2 0 2893 2951 526453000 526453058 6.730000e-17 99.0
8 TraesCS5B01G493700 chr5D 98.148 54 1 0 62 115 526431708 526431761 8.710000e-16 95.3
9 TraesCS5B01G493700 chr5A 89.020 1776 141 21 369 2122 653562773 653564516 0.000000e+00 2150.0
10 TraesCS5B01G493700 chr5A 89.328 1087 89 5 914 2000 653475388 653474329 0.000000e+00 1339.0
11 TraesCS5B01G493700 chr5A 81.333 225 29 9 560 773 653475690 653475468 1.410000e-38 171.0
12 TraesCS5B01G493700 chr3A 84.331 1136 105 39 836 1955 638016636 638015558 0.000000e+00 1044.0
13 TraesCS5B01G493700 chr3A 89.080 348 36 2 2192 2539 701247657 701248002 5.840000e-117 431.0
14 TraesCS5B01G493700 chr3A 91.016 256 21 1 2595 2848 701248007 701248262 7.830000e-91 344.0
15 TraesCS5B01G493700 chr3A 93.204 206 14 0 2643 2848 700329796 700329591 1.330000e-78 303.0
16 TraesCS5B01G493700 chr3D 86.598 970 89 20 990 1955 496768453 496767521 0.000000e+00 1033.0
17 TraesCS5B01G493700 chr3D 89.008 655 62 6 2192 2839 184142213 184141562 0.000000e+00 802.0
18 TraesCS5B01G493700 chr3D 89.394 66 4 1 2831 2893 184141154 184141089 2.440000e-11 80.5
19 TraesCS5B01G493700 chr3B 85.436 975 100 22 987 1955 656066835 656065897 0.000000e+00 976.0
20 TraesCS5B01G493700 chr1B 96.111 360 14 0 1223 1582 36276265 36275906 3.280000e-164 588.0
21 TraesCS5B01G493700 chr1B 77.566 682 94 27 2201 2849 121713442 121712787 1.010000e-94 357.0
22 TraesCS5B01G493700 chr1B 77.306 683 94 30 2201 2849 121563701 121563046 2.180000e-91 346.0
23 TraesCS5B01G493700 chr2D 80.911 571 97 6 1379 1949 376356362 376355804 9.710000e-120 440.0
24 TraesCS5B01G493700 chr2D 93.939 165 10 0 114 278 632423584 632423748 1.760000e-62 250.0
25 TraesCS5B01G493700 chr2D 79.643 280 46 9 2234 2509 412251714 412251442 1.080000e-44 191.0
26 TraesCS5B01G493700 chrUn 89.080 348 36 2 2192 2539 441090857 441091202 5.840000e-117 431.0
27 TraesCS5B01G493700 chrUn 89.080 348 36 2 2192 2539 446012757 446013102 5.840000e-117 431.0
28 TraesCS5B01G493700 chrUn 93.204 206 14 0 2643 2848 342887871 342888076 1.330000e-78 303.0
29 TraesCS5B01G493700 chrUn 93.976 166 9 1 114 279 25754365 25754529 1.760000e-62 250.0
30 TraesCS5B01G493700 chr4D 93.023 172 10 2 111 281 190480240 190480410 1.760000e-62 250.0
31 TraesCS5B01G493700 chr4D 91.954 174 14 0 105 278 182066911 182067084 8.170000e-61 244.0
32 TraesCS5B01G493700 chr4A 92.982 171 12 0 112 282 195972595 195972425 1.760000e-62 250.0
33 TraesCS5B01G493700 chr6B 92.045 176 12 2 104 279 487559924 487560097 2.270000e-61 246.0
34 TraesCS5B01G493700 chr6B 90.608 181 16 1 106 286 276259268 276259089 3.800000e-59 239.0
35 TraesCS5B01G493700 chr6B 77.333 225 39 8 2286 2508 22076081 22076295 3.990000e-24 122.0
36 TraesCS5B01G493700 chr6B 83.740 123 20 0 2386 2508 22002178 22002300 1.860000e-22 117.0
37 TraesCS5B01G493700 chr7B 92.353 170 11 2 111 279 423421493 423421661 1.060000e-59 241.0
38 TraesCS5B01G493700 chr2A 78.643 398 53 10 2438 2806 516109662 516110056 4.920000e-58 235.0
39 TraesCS5B01G493700 chr2A 85.833 120 13 4 2391 2509 579579439 579579323 1.110000e-24 124.0
40 TraesCS5B01G493700 chr1D 90.816 98 9 0 2749 2846 78035489 78035392 6.640000e-27 132.0
41 TraesCS5B01G493700 chr7D 94.000 50 3 0 2730 2779 112055510 112055559 3.150000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G493700 chr5B 661611172 661614122 2950 False 5450.00 5450 100.0000 1 2951 1 chr5B.!!$F2 2950
1 TraesCS5B01G493700 chr5B 661523944 661525133 1189 True 1410.00 1410 88.0430 791 2002 1 chr5B.!!$R1 1211
2 TraesCS5B01G493700 chr5D 526410243 526411902 1659 True 1515.00 1515 83.7870 355 2015 1 chr5D.!!$R1 1660
3 TraesCS5B01G493700 chr5D 526431708 526433627 1919 False 1137.65 2180 92.9555 62 2192 2 chr5D.!!$F4 2130
4 TraesCS5B01G493700 chr5A 653562773 653564516 1743 False 2150.00 2150 89.0200 369 2122 1 chr5A.!!$F1 1753
5 TraesCS5B01G493700 chr5A 653474329 653475690 1361 True 755.00 1339 85.3305 560 2000 2 chr5A.!!$R1 1440
6 TraesCS5B01G493700 chr3A 638015558 638016636 1078 True 1044.00 1044 84.3310 836 1955 1 chr3A.!!$R1 1119
7 TraesCS5B01G493700 chr3A 701247657 701248262 605 False 387.50 431 90.0480 2192 2848 2 chr3A.!!$F1 656
8 TraesCS5B01G493700 chr3D 496767521 496768453 932 True 1033.00 1033 86.5980 990 1955 1 chr3D.!!$R1 965
9 TraesCS5B01G493700 chr3D 184141089 184142213 1124 True 441.25 802 89.2010 2192 2893 2 chr3D.!!$R2 701
10 TraesCS5B01G493700 chr3B 656065897 656066835 938 True 976.00 976 85.4360 987 1955 1 chr3B.!!$R1 968
11 TraesCS5B01G493700 chr1B 121712787 121713442 655 True 357.00 357 77.5660 2201 2849 1 chr1B.!!$R3 648
12 TraesCS5B01G493700 chr1B 121563046 121563701 655 True 346.00 346 77.3060 2201 2849 1 chr1B.!!$R2 648
13 TraesCS5B01G493700 chr2D 376355804 376356362 558 True 440.00 440 80.9110 1379 1949 1 chr2D.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1078 0.171903 GTCGCTCCCGCTTGTAGTAA 59.828 55.0 0.0 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2897 3529 0.249868 TCACCGTGCTTTGAGACCTG 60.25 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.739276 ACTATGACTGGAATTTAGTGAATTTCA 57.261 29.630 1.69 1.69 40.23 2.69
36 37 8.055279 TGACTGGAATTTAGTGAATTTCATCC 57.945 34.615 1.78 5.10 41.34 3.51
37 38 7.890127 TGACTGGAATTTAGTGAATTTCATCCT 59.110 33.333 13.08 5.68 41.34 3.24
38 39 8.059798 ACTGGAATTTAGTGAATTTCATCCTG 57.940 34.615 14.72 14.72 41.34 3.86
39 40 7.671398 ACTGGAATTTAGTGAATTTCATCCTGT 59.329 33.333 15.60 15.60 41.34 4.00
40 41 8.421249 TGGAATTTAGTGAATTTCATCCTGTT 57.579 30.769 13.08 3.64 38.13 3.16
41 42 8.869109 TGGAATTTAGTGAATTTCATCCTGTTT 58.131 29.630 13.08 1.49 38.13 2.83
42 43 9.143631 GGAATTTAGTGAATTTCATCCTGTTTG 57.856 33.333 1.78 0.00 38.06 2.93
43 44 9.912634 GAATTTAGTGAATTTCATCCTGTTTGA 57.087 29.630 1.78 0.00 38.06 2.69
45 46 9.865321 ATTTAGTGAATTTCATCCTGTTTGATG 57.135 29.630 1.78 0.00 42.84 3.07
55 56 7.528996 TCATCCTGTTTGATGAAATTTGTCT 57.471 32.000 0.00 0.00 46.08 3.41
56 57 7.372714 TCATCCTGTTTGATGAAATTTGTCTG 58.627 34.615 0.00 0.00 46.08 3.51
57 58 6.088016 TCCTGTTTGATGAAATTTGTCTGG 57.912 37.500 0.00 0.00 0.00 3.86
58 59 4.687483 CCTGTTTGATGAAATTTGTCTGGC 59.313 41.667 0.00 0.00 0.00 4.85
59 60 5.510179 CCTGTTTGATGAAATTTGTCTGGCT 60.510 40.000 0.00 0.00 0.00 4.75
60 61 5.531634 TGTTTGATGAAATTTGTCTGGCTC 58.468 37.500 0.00 0.00 0.00 4.70
93 94 6.154203 TGTTTTAAAATGGATGTGAGCACA 57.846 33.333 5.70 5.70 46.44 4.57
115 116 7.278203 GCACAGTTCTCCCTTCTTAATTAGTAC 59.722 40.741 0.00 0.00 0.00 2.73
116 117 8.311836 CACAGTTCTCCCTTCTTAATTAGTACA 58.688 37.037 0.00 0.00 0.00 2.90
117 118 8.312564 ACAGTTCTCCCTTCTTAATTAGTACAC 58.687 37.037 0.00 0.00 0.00 2.90
118 119 7.764901 CAGTTCTCCCTTCTTAATTAGTACACC 59.235 40.741 0.00 0.00 0.00 4.16
119 120 6.803366 TCTCCCTTCTTAATTAGTACACCC 57.197 41.667 0.00 0.00 0.00 4.61
120 121 6.509386 TCTCCCTTCTTAATTAGTACACCCT 58.491 40.000 0.00 0.00 0.00 4.34
121 122 6.610425 TCTCCCTTCTTAATTAGTACACCCTC 59.390 42.308 0.00 0.00 0.00 4.30
122 123 5.664457 TCCCTTCTTAATTAGTACACCCTCC 59.336 44.000 0.00 0.00 0.00 4.30
123 124 5.452917 CCCTTCTTAATTAGTACACCCTCCG 60.453 48.000 0.00 0.00 0.00 4.63
124 125 5.128335 CCTTCTTAATTAGTACACCCTCCGT 59.872 44.000 0.00 0.00 0.00 4.69
125 126 6.351626 CCTTCTTAATTAGTACACCCTCCGTT 60.352 42.308 0.00 0.00 0.00 4.44
126 127 7.147846 CCTTCTTAATTAGTACACCCTCCGTTA 60.148 40.741 0.00 0.00 0.00 3.18
127 128 7.100458 TCTTAATTAGTACACCCTCCGTTAC 57.900 40.000 0.00 0.00 0.00 2.50
128 129 6.891908 TCTTAATTAGTACACCCTCCGTTACT 59.108 38.462 0.00 0.00 0.00 2.24
129 130 8.052748 TCTTAATTAGTACACCCTCCGTTACTA 58.947 37.037 0.00 0.00 0.00 1.82
130 131 8.588290 TTAATTAGTACACCCTCCGTTACTAA 57.412 34.615 0.00 0.00 35.40 2.24
131 132 7.480760 AATTAGTACACCCTCCGTTACTAAA 57.519 36.000 0.00 0.00 34.84 1.85
132 133 7.666063 ATTAGTACACCCTCCGTTACTAAAT 57.334 36.000 0.00 0.00 34.84 1.40
133 134 8.766994 ATTAGTACACCCTCCGTTACTAAATA 57.233 34.615 0.00 0.00 34.84 1.40
134 135 8.766994 TTAGTACACCCTCCGTTACTAAATAT 57.233 34.615 0.00 0.00 30.14 1.28
135 136 7.666063 AGTACACCCTCCGTTACTAAATATT 57.334 36.000 0.00 0.00 0.00 1.28
136 137 8.082672 AGTACACCCTCCGTTACTAAATATTT 57.917 34.615 5.89 5.89 0.00 1.40
137 138 7.983484 AGTACACCCTCCGTTACTAAATATTTG 59.017 37.037 11.05 3.88 0.00 2.32
138 139 5.587443 ACACCCTCCGTTACTAAATATTTGC 59.413 40.000 11.05 0.00 0.00 3.68
139 140 5.008316 CACCCTCCGTTACTAAATATTTGCC 59.992 44.000 11.05 0.00 0.00 4.52
140 141 5.104235 ACCCTCCGTTACTAAATATTTGCCT 60.104 40.000 11.05 0.00 0.00 4.75
141 142 5.826208 CCCTCCGTTACTAAATATTTGCCTT 59.174 40.000 11.05 0.00 0.00 4.35
142 143 6.320418 CCCTCCGTTACTAAATATTTGCCTTT 59.680 38.462 11.05 0.00 0.00 3.11
143 144 7.415229 CCTCCGTTACTAAATATTTGCCTTTC 58.585 38.462 11.05 0.00 0.00 2.62
144 145 7.282450 CCTCCGTTACTAAATATTTGCCTTTCT 59.718 37.037 11.05 0.00 0.00 2.52
145 146 9.321562 CTCCGTTACTAAATATTTGCCTTTCTA 57.678 33.333 11.05 0.00 0.00 2.10
146 147 9.321562 TCCGTTACTAAATATTTGCCTTTCTAG 57.678 33.333 11.05 0.31 0.00 2.43
147 148 9.321562 CCGTTACTAAATATTTGCCTTTCTAGA 57.678 33.333 11.05 0.00 0.00 2.43
156 157 9.860898 AATATTTGCCTTTCTAGACATTTCAAC 57.139 29.630 0.00 0.00 0.00 3.18
157 158 6.707440 TTTGCCTTTCTAGACATTTCAACA 57.293 33.333 0.00 0.00 0.00 3.33
158 159 5.947228 TGCCTTTCTAGACATTTCAACAG 57.053 39.130 0.00 0.00 0.00 3.16
159 160 4.761739 TGCCTTTCTAGACATTTCAACAGG 59.238 41.667 0.00 0.00 0.00 4.00
160 161 4.762251 GCCTTTCTAGACATTTCAACAGGT 59.238 41.667 0.00 0.00 0.00 4.00
161 162 5.335191 GCCTTTCTAGACATTTCAACAGGTG 60.335 44.000 0.00 0.00 0.00 4.00
162 163 5.997746 CCTTTCTAGACATTTCAACAGGTGA 59.002 40.000 0.00 0.00 0.00 4.02
163 164 6.073003 CCTTTCTAGACATTTCAACAGGTGAC 60.073 42.308 0.00 0.00 35.39 3.67
164 165 5.808366 TCTAGACATTTCAACAGGTGACT 57.192 39.130 0.00 0.00 46.44 3.41
165 166 6.911250 TCTAGACATTTCAACAGGTGACTA 57.089 37.500 0.00 0.00 40.21 2.59
166 167 6.688578 TCTAGACATTTCAACAGGTGACTAC 58.311 40.000 0.00 0.00 40.21 2.73
167 168 5.290493 AGACATTTCAACAGGTGACTACA 57.710 39.130 0.00 0.00 40.21 2.74
168 169 5.869579 AGACATTTCAACAGGTGACTACAT 58.130 37.500 0.00 0.00 40.21 2.29
169 170 7.004555 AGACATTTCAACAGGTGACTACATA 57.995 36.000 0.00 0.00 40.21 2.29
170 171 7.099764 AGACATTTCAACAGGTGACTACATAG 58.900 38.462 0.00 0.00 40.21 2.23
171 172 7.004555 ACATTTCAACAGGTGACTACATAGA 57.995 36.000 0.00 0.00 40.21 1.98
172 173 7.099764 ACATTTCAACAGGTGACTACATAGAG 58.900 38.462 0.00 0.00 40.21 2.43
173 174 6.911250 TTTCAACAGGTGACTACATAGAGA 57.089 37.500 0.00 0.00 40.21 3.10
174 175 6.516739 TTCAACAGGTGACTACATAGAGAG 57.483 41.667 0.00 0.00 40.21 3.20
175 176 4.399618 TCAACAGGTGACTACATAGAGAGC 59.600 45.833 0.00 0.00 40.21 4.09
176 177 3.969553 ACAGGTGACTACATAGAGAGCA 58.030 45.455 0.00 0.00 40.21 4.26
177 178 4.344978 ACAGGTGACTACATAGAGAGCAA 58.655 43.478 0.00 0.00 40.21 3.91
178 179 4.772624 ACAGGTGACTACATAGAGAGCAAA 59.227 41.667 0.00 0.00 40.21 3.68
179 180 5.246203 ACAGGTGACTACATAGAGAGCAAAA 59.754 40.000 0.00 0.00 40.21 2.44
180 181 6.070538 ACAGGTGACTACATAGAGAGCAAAAT 60.071 38.462 0.00 0.00 40.21 1.82
181 182 6.257411 CAGGTGACTACATAGAGAGCAAAATG 59.743 42.308 0.00 0.00 40.21 2.32
182 183 6.155221 AGGTGACTACATAGAGAGCAAAATGA 59.845 38.462 0.00 0.00 40.61 2.57
183 184 6.478344 GGTGACTACATAGAGAGCAAAATGAG 59.522 42.308 0.00 0.00 0.00 2.90
184 185 7.038659 GTGACTACATAGAGAGCAAAATGAGT 58.961 38.462 0.00 0.00 0.00 3.41
185 186 7.009999 GTGACTACATAGAGAGCAAAATGAGTG 59.990 40.741 0.00 0.00 0.00 3.51
186 187 7.093771 TGACTACATAGAGAGCAAAATGAGTGA 60.094 37.037 0.00 0.00 0.00 3.41
187 188 7.615403 ACTACATAGAGAGCAAAATGAGTGAA 58.385 34.615 0.00 0.00 0.00 3.18
188 189 8.263640 ACTACATAGAGAGCAAAATGAGTGAAT 58.736 33.333 0.00 0.00 0.00 2.57
189 190 7.551035 ACATAGAGAGCAAAATGAGTGAATC 57.449 36.000 0.00 0.00 0.00 2.52
190 191 7.337167 ACATAGAGAGCAAAATGAGTGAATCT 58.663 34.615 0.00 0.00 0.00 2.40
191 192 8.481314 ACATAGAGAGCAAAATGAGTGAATCTA 58.519 33.333 0.00 0.00 0.00 1.98
192 193 8.763356 CATAGAGAGCAAAATGAGTGAATCTAC 58.237 37.037 0.00 0.00 0.00 2.59
193 194 5.809562 AGAGAGCAAAATGAGTGAATCTACG 59.190 40.000 0.00 0.00 0.00 3.51
194 195 4.331168 AGAGCAAAATGAGTGAATCTACGC 59.669 41.667 0.00 0.00 0.00 4.42
195 196 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
196 197 4.331168 AGCAAAATGAGTGAATCTACGCTC 59.669 41.667 0.00 0.00 44.55 5.03
197 198 4.331168 GCAAAATGAGTGAATCTACGCTCT 59.669 41.667 0.00 0.00 44.58 4.09
198 199 5.520288 GCAAAATGAGTGAATCTACGCTCTA 59.480 40.000 0.00 0.00 44.58 2.43
199 200 6.036083 GCAAAATGAGTGAATCTACGCTCTAA 59.964 38.462 0.00 0.00 44.58 2.10
200 201 7.413000 GCAAAATGAGTGAATCTACGCTCTAAA 60.413 37.037 0.00 0.00 44.58 1.85
201 202 8.443160 CAAAATGAGTGAATCTACGCTCTAAAA 58.557 33.333 0.00 0.00 44.58 1.52
202 203 8.723942 AAATGAGTGAATCTACGCTCTAAAAT 57.276 30.769 0.00 0.00 44.58 1.82
203 204 9.817809 AAATGAGTGAATCTACGCTCTAAAATA 57.182 29.630 0.00 0.00 44.58 1.40
204 205 9.988815 AATGAGTGAATCTACGCTCTAAAATAT 57.011 29.630 0.00 0.00 44.58 1.28
205 206 8.803201 TGAGTGAATCTACGCTCTAAAATATG 57.197 34.615 0.00 0.00 44.58 1.78
206 207 8.414003 TGAGTGAATCTACGCTCTAAAATATGT 58.586 33.333 0.00 0.00 44.58 2.29
207 208 8.804688 AGTGAATCTACGCTCTAAAATATGTC 57.195 34.615 0.00 0.00 0.00 3.06
208 209 8.634444 AGTGAATCTACGCTCTAAAATATGTCT 58.366 33.333 0.00 0.00 0.00 3.41
209 210 9.894783 GTGAATCTACGCTCTAAAATATGTCTA 57.105 33.333 0.00 0.00 0.00 2.59
210 211 9.894783 TGAATCTACGCTCTAAAATATGTCTAC 57.105 33.333 0.00 0.00 0.00 2.59
211 212 9.894783 GAATCTACGCTCTAAAATATGTCTACA 57.105 33.333 0.00 0.00 0.00 2.74
217 218 9.627395 ACGCTCTAAAATATGTCTACATACATC 57.373 33.333 4.98 0.00 41.15 3.06
218 219 9.077674 CGCTCTAAAATATGTCTACATACATCC 57.922 37.037 4.98 0.00 41.15 3.51
219 220 9.077674 GCTCTAAAATATGTCTACATACATCCG 57.922 37.037 4.98 0.00 41.15 4.18
233 234 6.267496 CATACATCCGTATGTGATAGTCCA 57.733 41.667 3.56 0.00 46.70 4.02
234 235 6.867550 CATACATCCGTATGTGATAGTCCAT 58.132 40.000 3.56 0.00 46.70 3.41
235 236 5.808366 ACATCCGTATGTGATAGTCCATT 57.192 39.130 0.00 0.00 44.79 3.16
236 237 6.174720 ACATCCGTATGTGATAGTCCATTT 57.825 37.500 0.00 0.00 44.79 2.32
237 238 5.991606 ACATCCGTATGTGATAGTCCATTTG 59.008 40.000 0.00 0.00 44.79 2.32
238 239 5.862678 TCCGTATGTGATAGTCCATTTGA 57.137 39.130 0.00 0.00 0.00 2.69
239 240 6.228616 TCCGTATGTGATAGTCCATTTGAA 57.771 37.500 0.00 0.00 0.00 2.69
240 241 6.645306 TCCGTATGTGATAGTCCATTTGAAA 58.355 36.000 0.00 0.00 0.00 2.69
241 242 7.279615 TCCGTATGTGATAGTCCATTTGAAAT 58.720 34.615 0.00 0.00 0.00 2.17
242 243 7.226523 TCCGTATGTGATAGTCCATTTGAAATG 59.773 37.037 10.84 10.84 0.00 2.32
243 244 7.012327 CCGTATGTGATAGTCCATTTGAAATGT 59.988 37.037 15.93 1.43 0.00 2.71
244 245 8.064222 CGTATGTGATAGTCCATTTGAAATGTC 58.936 37.037 15.93 7.63 0.00 3.06
245 246 9.113838 GTATGTGATAGTCCATTTGAAATGTCT 57.886 33.333 15.93 14.81 0.00 3.41
247 248 9.685276 ATGTGATAGTCCATTTGAAATGTCTAA 57.315 29.630 15.93 5.11 0.00 2.10
248 249 9.513906 TGTGATAGTCCATTTGAAATGTCTAAA 57.486 29.630 15.93 8.65 0.00 1.85
268 269 9.983804 GTCTAAAAAGACAAATATTTAGGGACG 57.016 33.333 0.00 0.00 38.59 4.79
269 270 9.169592 TCTAAAAAGACAAATATTTAGGGACGG 57.830 33.333 0.00 0.00 36.48 4.79
270 271 9.169592 CTAAAAAGACAAATATTTAGGGACGGA 57.830 33.333 0.00 0.00 33.69 4.69
271 272 7.625828 AAAAGACAAATATTTAGGGACGGAG 57.374 36.000 0.00 0.00 0.00 4.63
272 273 5.291905 AGACAAATATTTAGGGACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
273 274 4.102681 AGACAAATATTTAGGGACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
274 275 4.042174 ACAAATATTTAGGGACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
275 276 4.102681 ACAAATATTTAGGGACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
276 277 3.632420 ATATTTAGGGACGGAGGGAGT 57.368 47.619 0.00 0.00 0.00 3.85
277 278 4.754411 ATATTTAGGGACGGAGGGAGTA 57.246 45.455 0.00 0.00 0.00 2.59
289 290 5.646215 ACGGAGGGAGTAGATGAGATAAAT 58.354 41.667 0.00 0.00 0.00 1.40
295 296 9.705290 GAGGGAGTAGATGAGATAAATCTTTTC 57.295 37.037 0.00 0.00 37.25 2.29
296 297 8.655901 AGGGAGTAGATGAGATAAATCTTTTCC 58.344 37.037 0.00 0.00 37.25 3.13
300 301 9.445973 AGTAGATGAGATAAATCTTTTCCCTCT 57.554 33.333 0.00 0.00 37.25 3.69
308 309 9.467796 AGATAAATCTTTTCCCTCTGTTTAAGG 57.532 33.333 0.00 0.00 31.97 2.69
331 332 8.463930 AGGAAAAGAAGTAATGTGATGTGAAA 57.536 30.769 0.00 0.00 0.00 2.69
347 348 3.886550 AAAGGAGGCCGGCCAAAGG 62.887 63.158 45.13 0.00 38.92 3.11
359 360 0.469144 GCCAAAGGTTCAGGGACCAA 60.469 55.000 0.00 0.00 42.35 3.67
399 400 4.036518 AGAGGTAAGCAATGTCTCCATCT 58.963 43.478 0.00 0.00 0.00 2.90
400 401 4.100808 AGAGGTAAGCAATGTCTCCATCTC 59.899 45.833 0.00 0.00 0.00 2.75
401 402 3.776969 AGGTAAGCAATGTCTCCATCTCA 59.223 43.478 0.00 0.00 0.00 3.27
402 403 4.125703 GGTAAGCAATGTCTCCATCTCAG 58.874 47.826 0.00 0.00 0.00 3.35
403 404 3.996921 AAGCAATGTCTCCATCTCAGT 57.003 42.857 0.00 0.00 0.00 3.41
411 412 4.860022 TGTCTCCATCTCAGTATCTCACA 58.140 43.478 0.00 0.00 0.00 3.58
414 415 2.952310 TCCATCTCAGTATCTCACACGG 59.048 50.000 0.00 0.00 0.00 4.94
429 430 2.882137 CACACGGACCACAAAACCTAAT 59.118 45.455 0.00 0.00 0.00 1.73
490 513 3.150335 CTCCGGCCTGAGCTGCTA 61.150 66.667 11.59 0.00 44.67 3.49
493 516 0.542938 TCCGGCCTGAGCTGCTATAT 60.543 55.000 0.15 0.00 44.67 0.86
494 517 1.186200 CCGGCCTGAGCTGCTATATA 58.814 55.000 0.15 0.00 44.67 0.86
495 518 1.134965 CCGGCCTGAGCTGCTATATAC 60.135 57.143 0.15 0.00 44.67 1.47
818 874 7.148239 CGCCAAATAAACTATTCTTCTTCCTGT 60.148 37.037 0.00 0.00 0.00 4.00
852 912 2.773487 TGTGCACGCCTATAAAACAGT 58.227 42.857 13.13 0.00 0.00 3.55
886 947 1.227943 GCTAGCCATCGCATTCCCA 60.228 57.895 2.29 0.00 37.52 4.37
895 956 2.511600 GCATTCCCACTCGACCGG 60.512 66.667 0.00 0.00 0.00 5.28
896 957 2.511600 CATTCCCACTCGACCGGC 60.512 66.667 0.00 0.00 0.00 6.13
897 958 4.143333 ATTCCCACTCGACCGGCG 62.143 66.667 0.00 6.66 42.69 6.46
906 989 4.052229 CGACCGGCGTCTGGAGTT 62.052 66.667 6.01 0.00 36.82 3.01
942 1031 0.768622 TTGTTTGATCCACCTCCGGT 59.231 50.000 0.00 0.00 35.62 5.28
960 1078 0.171903 GTCGCTCCCGCTTGTAGTAA 59.828 55.000 0.00 0.00 0.00 2.24
962 1080 0.454600 CGCTCCCGCTTGTAGTAAGA 59.545 55.000 0.00 0.00 0.00 2.10
964 1082 1.803252 GCTCCCGCTTGTAGTAAGAGC 60.803 57.143 0.00 0.00 38.56 4.09
965 1083 1.476891 CTCCCGCTTGTAGTAAGAGCA 59.523 52.381 6.78 0.00 36.22 4.26
966 1084 1.476891 TCCCGCTTGTAGTAAGAGCAG 59.523 52.381 6.78 0.00 36.22 4.24
967 1085 1.476891 CCCGCTTGTAGTAAGAGCAGA 59.523 52.381 6.78 0.00 36.22 4.26
968 1086 2.480416 CCCGCTTGTAGTAAGAGCAGAG 60.480 54.545 6.78 0.00 36.22 3.35
969 1087 2.164624 CCGCTTGTAGTAAGAGCAGAGT 59.835 50.000 6.78 0.00 36.22 3.24
970 1088 3.430931 CGCTTGTAGTAAGAGCAGAGTC 58.569 50.000 6.78 0.00 36.22 3.36
971 1089 3.430931 GCTTGTAGTAAGAGCAGAGTCG 58.569 50.000 2.08 0.00 36.45 4.18
972 1090 3.127203 GCTTGTAGTAAGAGCAGAGTCGA 59.873 47.826 2.08 0.00 36.45 4.20
1257 1400 4.111053 GACGCCTTCCCCTTCCCC 62.111 72.222 0.00 0.00 0.00 4.81
1281 1427 0.036010 CTTCCACTTCCACGGATGCT 60.036 55.000 0.00 0.00 0.00 3.79
1300 1446 3.055719 CCGCAGCCGACCAATGTT 61.056 61.111 0.00 0.00 36.29 2.71
1320 1466 3.222855 CCCGGCGAGCTGATCTCT 61.223 66.667 9.30 0.00 39.70 3.10
1326 1472 1.299014 CGAGCTGATCTCTGCCGTC 60.299 63.158 0.00 0.00 41.03 4.79
1342 1494 1.065701 CCGTCGACATCTACCAGAAGG 59.934 57.143 17.16 0.00 42.21 3.46
1343 1495 1.534175 CGTCGACATCTACCAGAAGGC 60.534 57.143 17.16 0.00 39.06 4.35
1344 1496 0.738975 TCGACATCTACCAGAAGGCG 59.261 55.000 0.38 0.38 44.98 5.52
1345 1497 0.738975 CGACATCTACCAGAAGGCGA 59.261 55.000 0.51 0.00 46.38 5.54
1346 1498 1.134367 CGACATCTACCAGAAGGCGAA 59.866 52.381 0.51 0.00 46.38 4.70
1347 1499 2.796383 CGACATCTACCAGAAGGCGAAG 60.796 54.545 0.51 0.00 46.38 3.79
1375 1527 2.364448 GGCCCCTCTTCTCTCGGT 60.364 66.667 0.00 0.00 0.00 4.69
1480 1635 4.083862 GGGCGGCCTCGTTCTCTT 62.084 66.667 22.87 0.00 38.89 2.85
1525 1680 4.671590 TCGTCGACCCCCAGAGCA 62.672 66.667 10.58 0.00 0.00 4.26
1593 1748 2.598099 TGGTACACCGGCGAGACA 60.598 61.111 9.30 0.00 39.43 3.41
1680 1838 1.472026 GCCGGATGCCTTAACGTTAGA 60.472 52.381 5.05 0.00 0.00 2.10
1683 1841 3.114065 CGGATGCCTTAACGTTAGAGAC 58.886 50.000 8.23 3.06 0.00 3.36
1808 1966 1.219393 GGGAAAGAGACGAGGCCAG 59.781 63.158 5.01 0.00 0.00 4.85
1939 2097 4.516195 GCTTCCTCGCCTCCGTCC 62.516 72.222 0.00 0.00 35.54 4.79
1960 2126 2.010582 GCTCCGGTAGAGTCAGGCAG 62.011 65.000 0.00 0.00 45.21 4.85
1961 2127 1.379977 TCCGGTAGAGTCAGGCAGG 60.380 63.158 0.00 0.00 0.00 4.85
1962 2128 2.427245 CCGGTAGAGTCAGGCAGGG 61.427 68.421 0.00 0.00 0.00 4.45
1963 2129 1.682684 CGGTAGAGTCAGGCAGGGT 60.683 63.158 0.00 0.00 0.00 4.34
1964 2130 1.668101 CGGTAGAGTCAGGCAGGGTC 61.668 65.000 0.00 0.00 0.00 4.46
1982 2152 1.006102 CGGGTCCGGATATCTGTGC 60.006 63.158 7.81 2.88 35.56 4.57
1994 2164 2.479566 ATCTGTGCACCTCGTGAAAT 57.520 45.000 15.69 0.00 35.23 2.17
2115 2290 2.084546 GTCCCGAAAATTCAGGGAGTG 58.915 52.381 19.29 1.29 44.60 3.51
2151 2326 3.253230 GCTCACAATTTAACCATGGTGC 58.747 45.455 20.60 9.55 0.00 5.01
2166 2341 4.761739 CCATGGTGCTCTTCTGAAAAAGTA 59.238 41.667 2.57 0.00 0.00 2.24
2167 2342 5.335191 CCATGGTGCTCTTCTGAAAAAGTAC 60.335 44.000 2.57 10.32 0.00 2.73
2173 2348 7.307811 GGTGCTCTTCTGAAAAAGTACGTAAAT 60.308 37.037 0.00 0.00 0.00 1.40
2187 2362 6.367983 AGTACGTAAATATAGTCACTGGGGA 58.632 40.000 0.00 0.00 0.00 4.81
2190 2365 6.579865 ACGTAAATATAGTCACTGGGGAAAG 58.420 40.000 0.00 0.00 0.00 2.62
2194 2369 1.952621 TAGTCACTGGGGAAAGGAGG 58.047 55.000 0.00 0.00 0.00 4.30
2198 2373 1.464198 ACTGGGGAAAGGAGGCTGT 60.464 57.895 0.00 0.00 0.00 4.40
2218 2393 1.540267 TTTTTCTACCATGCACGGGG 58.460 50.000 2.80 0.93 0.00 5.73
2250 2431 4.219944 GCATGGCATCAACTCCATTATGAT 59.780 41.667 0.00 0.00 40.88 2.45
2253 2434 6.438186 TGGCATCAACTCCATTATGATAGA 57.562 37.500 0.00 0.00 32.73 1.98
2304 2485 3.245264 CCTAGATTCTCCCTCTCTCCTCC 60.245 56.522 0.00 0.00 0.00 4.30
2338 2519 8.872845 CATGCATTTTAAGTTTAGTCCCAAATC 58.127 33.333 0.00 0.00 0.00 2.17
2349 2530 2.158519 AGTCCCAAATCCAAAACCGTCT 60.159 45.455 0.00 0.00 0.00 4.18
2397 2578 7.908082 GCTTTCTGATATGTTTACGTATTTGCA 59.092 33.333 0.00 0.00 0.00 4.08
2532 2713 8.912988 ACTAACCAAATTTGTCTTCTTTCATCA 58.087 29.630 16.73 0.00 0.00 3.07
2542 2723 6.738114 TGTCTTCTTTCATCATGTTTTGGAC 58.262 36.000 0.00 0.00 0.00 4.02
2543 2724 6.547141 TGTCTTCTTTCATCATGTTTTGGACT 59.453 34.615 0.00 0.00 0.00 3.85
2544 2725 7.068593 TGTCTTCTTTCATCATGTTTTGGACTT 59.931 33.333 0.00 0.00 0.00 3.01
2545 2726 7.922811 GTCTTCTTTCATCATGTTTTGGACTTT 59.077 33.333 0.00 0.00 0.00 2.66
2546 2727 9.130661 TCTTCTTTCATCATGTTTTGGACTTTA 57.869 29.630 0.00 0.00 0.00 1.85
2582 2768 4.349663 TTGTGTCGGCATACTATTTTGC 57.650 40.909 0.00 0.00 38.14 3.68
2592 2778 7.553402 TCGGCATACTATTTTGCTTTTACCTTA 59.447 33.333 0.00 0.00 38.88 2.69
2678 2868 9.727627 TCAAAATTCAAAATTGCCAAAACATAC 57.272 25.926 0.00 0.00 0.00 2.39
2791 3004 6.861065 AATAAAATCCATGTACTAGTGCGG 57.139 37.500 5.39 1.90 0.00 5.69
2806 3019 2.092103 AGTGCGGAGGAGAGAGAACTAT 60.092 50.000 0.00 0.00 0.00 2.12
2829 3042 1.134250 GTTGGGAGAGAGGAATGGAGC 60.134 57.143 0.00 0.00 0.00 4.70
2893 3525 9.276590 CAGATGACTTTAAATACTCATGGCATA 57.723 33.333 0.00 0.00 0.00 3.14
2894 3526 9.277783 AGATGACTTTAAATACTCATGGCATAC 57.722 33.333 0.00 0.00 0.00 2.39
2895 3527 7.477144 TGACTTTAAATACTCATGGCATACG 57.523 36.000 0.00 0.00 0.00 3.06
2896 3528 6.018262 TGACTTTAAATACTCATGGCATACGC 60.018 38.462 0.00 0.00 37.44 4.42
2906 3538 4.932789 GCATACGCCAGGTCTCAA 57.067 55.556 0.00 0.00 0.00 3.02
2907 3539 3.153024 GCATACGCCAGGTCTCAAA 57.847 52.632 0.00 0.00 0.00 2.69
2908 3540 1.009829 GCATACGCCAGGTCTCAAAG 58.990 55.000 0.00 0.00 0.00 2.77
2909 3541 1.009829 CATACGCCAGGTCTCAAAGC 58.990 55.000 0.00 0.00 0.00 3.51
2910 3542 0.613260 ATACGCCAGGTCTCAAAGCA 59.387 50.000 0.00 0.00 0.00 3.91
2911 3543 0.320421 TACGCCAGGTCTCAAAGCAC 60.320 55.000 0.00 0.00 0.00 4.40
2912 3544 2.671177 CGCCAGGTCTCAAAGCACG 61.671 63.158 0.00 0.00 0.00 5.34
2913 3545 2.328099 GCCAGGTCTCAAAGCACGG 61.328 63.158 0.00 0.00 0.00 4.94
2914 3546 1.071471 CCAGGTCTCAAAGCACGGT 59.929 57.895 0.00 0.00 0.00 4.83
2915 3547 1.230635 CCAGGTCTCAAAGCACGGTG 61.231 60.000 3.15 3.15 0.00 4.94
2916 3548 0.249868 CAGGTCTCAAAGCACGGTGA 60.250 55.000 13.29 0.00 0.00 4.02
2917 3549 0.468226 AGGTCTCAAAGCACGGTGAA 59.532 50.000 13.29 0.00 0.00 3.18
2918 3550 1.134220 AGGTCTCAAAGCACGGTGAAA 60.134 47.619 13.29 0.00 0.00 2.69
2919 3551 1.673920 GGTCTCAAAGCACGGTGAAAA 59.326 47.619 13.29 0.00 0.00 2.29
2920 3552 2.293399 GGTCTCAAAGCACGGTGAAAAT 59.707 45.455 13.29 0.00 0.00 1.82
2921 3553 3.500680 GGTCTCAAAGCACGGTGAAAATA 59.499 43.478 13.29 0.00 0.00 1.40
2922 3554 4.464112 GTCTCAAAGCACGGTGAAAATAC 58.536 43.478 13.29 0.00 0.00 1.89
2923 3555 3.500680 TCTCAAAGCACGGTGAAAATACC 59.499 43.478 13.29 0.00 37.37 2.73
2924 3556 3.215151 TCAAAGCACGGTGAAAATACCA 58.785 40.909 13.29 0.00 40.89 3.25
2925 3557 3.003897 TCAAAGCACGGTGAAAATACCAC 59.996 43.478 13.29 0.00 40.89 4.16
2926 3558 2.561478 AGCACGGTGAAAATACCACT 57.439 45.000 13.29 0.00 40.89 4.00
2927 3559 3.688694 AGCACGGTGAAAATACCACTA 57.311 42.857 13.29 0.00 40.89 2.74
2928 3560 3.596214 AGCACGGTGAAAATACCACTAG 58.404 45.455 13.29 0.00 40.89 2.57
2929 3561 2.676342 GCACGGTGAAAATACCACTAGG 59.324 50.000 13.29 0.00 40.89 3.02
2930 3562 2.676342 CACGGTGAAAATACCACTAGGC 59.324 50.000 0.74 0.00 40.89 3.93
2931 3563 2.285977 CGGTGAAAATACCACTAGGCC 58.714 52.381 0.00 0.00 40.89 5.19
2932 3564 2.355310 CGGTGAAAATACCACTAGGCCA 60.355 50.000 5.01 0.00 40.89 5.36
2933 3565 3.692690 GGTGAAAATACCACTAGGCCAA 58.307 45.455 5.01 0.00 40.54 4.52
2934 3566 4.278310 GGTGAAAATACCACTAGGCCAAT 58.722 43.478 5.01 0.00 40.54 3.16
2935 3567 5.442391 GGTGAAAATACCACTAGGCCAATA 58.558 41.667 5.01 0.00 40.54 1.90
2936 3568 5.298527 GGTGAAAATACCACTAGGCCAATAC 59.701 44.000 5.01 0.00 40.54 1.89
2937 3569 6.120220 GTGAAAATACCACTAGGCCAATACT 58.880 40.000 5.01 0.00 39.06 2.12
2938 3570 7.277396 GTGAAAATACCACTAGGCCAATACTA 58.723 38.462 5.01 0.00 39.06 1.82
2939 3571 7.441458 GTGAAAATACCACTAGGCCAATACTAG 59.559 40.741 5.01 0.00 42.77 2.57
2940 3572 5.485209 AATACCACTAGGCCAATACTAGC 57.515 43.478 5.01 0.00 41.22 3.42
2941 3573 3.047695 ACCACTAGGCCAATACTAGCT 57.952 47.619 5.01 0.00 41.22 3.32
2942 3574 2.966516 ACCACTAGGCCAATACTAGCTC 59.033 50.000 5.01 0.00 41.22 4.09
2943 3575 2.965831 CCACTAGGCCAATACTAGCTCA 59.034 50.000 5.01 0.00 41.22 4.26
2944 3576 3.388024 CCACTAGGCCAATACTAGCTCAA 59.612 47.826 5.01 0.00 41.22 3.02
2945 3577 4.141711 CCACTAGGCCAATACTAGCTCAAA 60.142 45.833 5.01 0.00 41.22 2.69
2946 3578 5.455326 CCACTAGGCCAATACTAGCTCAAAT 60.455 44.000 5.01 0.00 41.22 2.32
2947 3579 6.058183 CACTAGGCCAATACTAGCTCAAATT 58.942 40.000 5.01 0.00 41.22 1.82
2948 3580 6.203723 CACTAGGCCAATACTAGCTCAAATTC 59.796 42.308 5.01 0.00 41.22 2.17
2949 3581 5.379706 AGGCCAATACTAGCTCAAATTCT 57.620 39.130 5.01 0.00 0.00 2.40
2950 3582 5.128919 AGGCCAATACTAGCTCAAATTCTG 58.871 41.667 5.01 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.739276 TGAAATTCACTAAATTCCAGTCATAGT 57.261 29.630 0.00 0.00 36.54 2.12
10 11 8.689972 GGATGAAATTCACTAAATTCCAGTCAT 58.310 33.333 0.00 0.00 36.54 3.06
11 12 7.890127 AGGATGAAATTCACTAAATTCCAGTCA 59.110 33.333 12.04 0.00 36.54 3.41
12 13 8.186821 CAGGATGAAATTCACTAAATTCCAGTC 58.813 37.037 12.04 0.00 39.69 3.51
13 14 7.671398 ACAGGATGAAATTCACTAAATTCCAGT 59.329 33.333 12.04 8.07 39.69 4.00
14 15 8.059798 ACAGGATGAAATTCACTAAATTCCAG 57.940 34.615 12.04 7.55 39.69 3.86
15 16 8.421249 AACAGGATGAAATTCACTAAATTCCA 57.579 30.769 12.04 0.00 39.69 3.53
16 17 9.143631 CAAACAGGATGAAATTCACTAAATTCC 57.856 33.333 0.00 0.10 39.69 3.01
17 18 9.912634 TCAAACAGGATGAAATTCACTAAATTC 57.087 29.630 0.00 0.00 39.69 2.17
19 20 9.865321 CATCAAACAGGATGAAATTCACTAAAT 57.135 29.630 0.00 0.00 46.00 1.40
32 33 6.588756 CCAGACAAATTTCATCAAACAGGATG 59.411 38.462 0.00 0.00 44.78 3.51
33 34 6.694447 CCAGACAAATTTCATCAAACAGGAT 58.306 36.000 0.00 0.00 0.00 3.24
34 35 5.509501 GCCAGACAAATTTCATCAAACAGGA 60.510 40.000 0.00 0.00 0.00 3.86
35 36 4.687483 GCCAGACAAATTTCATCAAACAGG 59.313 41.667 0.00 0.00 0.00 4.00
36 37 5.535333 AGCCAGACAAATTTCATCAAACAG 58.465 37.500 0.00 0.00 0.00 3.16
37 38 5.068855 TGAGCCAGACAAATTTCATCAAACA 59.931 36.000 0.00 0.00 0.00 2.83
38 39 5.531634 TGAGCCAGACAAATTTCATCAAAC 58.468 37.500 0.00 0.00 0.00 2.93
39 40 5.787953 TGAGCCAGACAAATTTCATCAAA 57.212 34.783 0.00 0.00 0.00 2.69
40 41 5.988310 ATGAGCCAGACAAATTTCATCAA 57.012 34.783 0.00 0.00 0.00 2.57
41 42 5.945191 TGTATGAGCCAGACAAATTTCATCA 59.055 36.000 0.91 0.00 32.49 3.07
42 43 6.441093 TGTATGAGCCAGACAAATTTCATC 57.559 37.500 0.91 0.00 32.49 2.92
43 44 6.839124 TTGTATGAGCCAGACAAATTTCAT 57.161 33.333 11.38 0.00 41.57 2.57
44 45 6.647334 TTTGTATGAGCCAGACAAATTTCA 57.353 33.333 18.17 3.29 46.07 2.69
50 51 6.403866 AACAAATTTGTATGAGCCAGACAA 57.596 33.333 23.53 10.17 42.56 3.18
51 52 6.403866 AAACAAATTTGTATGAGCCAGACA 57.596 33.333 23.53 0.00 41.31 3.41
52 53 8.810652 TTAAAACAAATTTGTATGAGCCAGAC 57.189 30.769 23.53 0.00 41.31 3.51
53 54 9.823647 TTTTAAAACAAATTTGTATGAGCCAGA 57.176 25.926 23.53 3.22 41.31 3.86
56 57 9.824534 CCATTTTAAAACAAATTTGTATGAGCC 57.175 29.630 23.53 0.00 41.31 4.70
93 94 7.092979 GGGTGTACTAATTAAGAAGGGAGAACT 60.093 40.741 0.00 0.00 0.00 3.01
115 116 5.008316 GGCAAATATTTAGTAACGGAGGGTG 59.992 44.000 0.00 0.00 0.00 4.61
116 117 5.104235 AGGCAAATATTTAGTAACGGAGGGT 60.104 40.000 0.00 0.00 0.00 4.34
117 118 5.374071 AGGCAAATATTTAGTAACGGAGGG 58.626 41.667 0.00 0.00 0.00 4.30
118 119 6.937436 AAGGCAAATATTTAGTAACGGAGG 57.063 37.500 0.00 0.00 0.00 4.30
119 120 8.209917 AGAAAGGCAAATATTTAGTAACGGAG 57.790 34.615 0.00 0.00 0.00 4.63
120 121 9.321562 CTAGAAAGGCAAATATTTAGTAACGGA 57.678 33.333 0.00 0.00 0.00 4.69
121 122 9.321562 TCTAGAAAGGCAAATATTTAGTAACGG 57.678 33.333 0.00 0.00 0.00 4.44
130 131 9.860898 GTTGAAATGTCTAGAAAGGCAAATATT 57.139 29.630 0.00 0.00 41.63 1.28
131 132 9.023962 TGTTGAAATGTCTAGAAAGGCAAATAT 57.976 29.630 0.00 0.00 41.63 1.28
132 133 8.402798 TGTTGAAATGTCTAGAAAGGCAAATA 57.597 30.769 0.00 0.00 41.63 1.40
133 134 7.288810 TGTTGAAATGTCTAGAAAGGCAAAT 57.711 32.000 0.00 0.00 41.63 2.32
134 135 6.239008 CCTGTTGAAATGTCTAGAAAGGCAAA 60.239 38.462 0.00 0.00 41.63 3.68
135 136 5.241506 CCTGTTGAAATGTCTAGAAAGGCAA 59.758 40.000 0.00 0.00 41.63 4.52
136 137 4.761739 CCTGTTGAAATGTCTAGAAAGGCA 59.238 41.667 0.00 0.00 42.75 4.75
137 138 4.762251 ACCTGTTGAAATGTCTAGAAAGGC 59.238 41.667 0.00 0.00 0.00 4.35
138 139 5.997746 TCACCTGTTGAAATGTCTAGAAAGG 59.002 40.000 0.00 0.00 0.00 3.11
139 140 6.708054 AGTCACCTGTTGAAATGTCTAGAAAG 59.292 38.462 0.00 0.00 35.39 2.62
140 141 6.591935 AGTCACCTGTTGAAATGTCTAGAAA 58.408 36.000 0.00 0.00 35.39 2.52
141 142 6.174720 AGTCACCTGTTGAAATGTCTAGAA 57.825 37.500 0.00 0.00 35.39 2.10
142 143 5.808366 AGTCACCTGTTGAAATGTCTAGA 57.192 39.130 0.00 0.00 35.39 2.43
143 144 6.455647 TGTAGTCACCTGTTGAAATGTCTAG 58.544 40.000 0.00 0.00 35.39 2.43
144 145 6.413783 TGTAGTCACCTGTTGAAATGTCTA 57.586 37.500 0.00 0.00 35.39 2.59
145 146 5.290493 TGTAGTCACCTGTTGAAATGTCT 57.710 39.130 0.00 0.00 35.39 3.41
146 147 7.097192 TCTATGTAGTCACCTGTTGAAATGTC 58.903 38.462 0.00 0.00 35.39 3.06
147 148 7.004555 TCTATGTAGTCACCTGTTGAAATGT 57.995 36.000 0.00 0.00 35.39 2.71
148 149 7.323420 TCTCTATGTAGTCACCTGTTGAAATG 58.677 38.462 0.00 0.00 35.39 2.32
149 150 7.482169 TCTCTATGTAGTCACCTGTTGAAAT 57.518 36.000 0.00 0.00 35.39 2.17
150 151 6.572509 GCTCTCTATGTAGTCACCTGTTGAAA 60.573 42.308 0.00 0.00 35.39 2.69
151 152 5.105716 GCTCTCTATGTAGTCACCTGTTGAA 60.106 44.000 0.00 0.00 35.39 2.69
152 153 4.399618 GCTCTCTATGTAGTCACCTGTTGA 59.600 45.833 0.00 0.00 0.00 3.18
153 154 4.158579 TGCTCTCTATGTAGTCACCTGTTG 59.841 45.833 0.00 0.00 0.00 3.33
154 155 4.344978 TGCTCTCTATGTAGTCACCTGTT 58.655 43.478 0.00 0.00 0.00 3.16
155 156 3.969553 TGCTCTCTATGTAGTCACCTGT 58.030 45.455 0.00 0.00 0.00 4.00
156 157 4.991153 TTGCTCTCTATGTAGTCACCTG 57.009 45.455 0.00 0.00 0.00 4.00
157 158 6.155221 TCATTTTGCTCTCTATGTAGTCACCT 59.845 38.462 0.00 0.00 0.00 4.00
158 159 6.341316 TCATTTTGCTCTCTATGTAGTCACC 58.659 40.000 0.00 0.00 0.00 4.02
159 160 7.009999 CACTCATTTTGCTCTCTATGTAGTCAC 59.990 40.741 0.00 0.00 0.00 3.67
160 161 7.038048 CACTCATTTTGCTCTCTATGTAGTCA 58.962 38.462 0.00 0.00 0.00 3.41
161 162 7.261325 TCACTCATTTTGCTCTCTATGTAGTC 58.739 38.462 0.00 0.00 0.00 2.59
162 163 7.175347 TCACTCATTTTGCTCTCTATGTAGT 57.825 36.000 0.00 0.00 0.00 2.73
163 164 8.659925 ATTCACTCATTTTGCTCTCTATGTAG 57.340 34.615 0.00 0.00 0.00 2.74
164 165 8.481314 AGATTCACTCATTTTGCTCTCTATGTA 58.519 33.333 0.00 0.00 0.00 2.29
165 166 7.337167 AGATTCACTCATTTTGCTCTCTATGT 58.663 34.615 0.00 0.00 0.00 2.29
166 167 7.789273 AGATTCACTCATTTTGCTCTCTATG 57.211 36.000 0.00 0.00 0.00 2.23
167 168 7.651304 CGTAGATTCACTCATTTTGCTCTCTAT 59.349 37.037 0.00 0.00 0.00 1.98
168 169 6.975197 CGTAGATTCACTCATTTTGCTCTCTA 59.025 38.462 0.00 0.00 0.00 2.43
169 170 5.809562 CGTAGATTCACTCATTTTGCTCTCT 59.190 40.000 0.00 0.00 0.00 3.10
170 171 5.501574 GCGTAGATTCACTCATTTTGCTCTC 60.502 44.000 0.00 0.00 0.00 3.20
171 172 4.331168 GCGTAGATTCACTCATTTTGCTCT 59.669 41.667 0.00 0.00 0.00 4.09
172 173 4.331168 AGCGTAGATTCACTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
173 174 4.256920 AGCGTAGATTCACTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
174 175 4.331168 AGAGCGTAGATTCACTCATTTTGC 59.669 41.667 0.00 0.00 0.00 3.68
175 176 7.525688 TTAGAGCGTAGATTCACTCATTTTG 57.474 36.000 0.00 0.00 0.00 2.44
176 177 8.547967 TTTTAGAGCGTAGATTCACTCATTTT 57.452 30.769 0.00 0.00 0.00 1.82
177 178 8.723942 ATTTTAGAGCGTAGATTCACTCATTT 57.276 30.769 0.00 0.00 0.00 2.32
178 179 9.988815 ATATTTTAGAGCGTAGATTCACTCATT 57.011 29.630 0.00 0.00 0.00 2.57
179 180 9.416794 CATATTTTAGAGCGTAGATTCACTCAT 57.583 33.333 0.00 0.00 0.00 2.90
180 181 8.414003 ACATATTTTAGAGCGTAGATTCACTCA 58.586 33.333 0.00 0.00 0.00 3.41
181 182 8.804688 ACATATTTTAGAGCGTAGATTCACTC 57.195 34.615 0.00 0.00 0.00 3.51
182 183 8.634444 AGACATATTTTAGAGCGTAGATTCACT 58.366 33.333 0.00 0.00 0.00 3.41
183 184 8.804688 AGACATATTTTAGAGCGTAGATTCAC 57.195 34.615 0.00 0.00 0.00 3.18
184 185 9.894783 GTAGACATATTTTAGAGCGTAGATTCA 57.105 33.333 0.00 0.00 0.00 2.57
185 186 9.894783 TGTAGACATATTTTAGAGCGTAGATTC 57.105 33.333 0.00 0.00 0.00 2.52
191 192 9.627395 GATGTATGTAGACATATTTTAGAGCGT 57.373 33.333 5.69 0.00 40.18 5.07
192 193 9.077674 GGATGTATGTAGACATATTTTAGAGCG 57.922 37.037 5.69 0.00 40.18 5.03
193 194 9.077674 CGGATGTATGTAGACATATTTTAGAGC 57.922 37.037 5.69 0.00 40.18 4.09
211 212 7.482169 AATGGACTATCACATACGGATGTAT 57.518 36.000 14.23 10.02 44.82 2.29
212 213 6.911250 AATGGACTATCACATACGGATGTA 57.089 37.500 14.23 2.61 44.82 2.29
214 215 6.223120 TCAAATGGACTATCACATACGGATG 58.777 40.000 5.94 5.94 39.16 3.51
215 216 6.419484 TCAAATGGACTATCACATACGGAT 57.581 37.500 0.00 0.00 0.00 4.18
216 217 5.862678 TCAAATGGACTATCACATACGGA 57.137 39.130 0.00 0.00 0.00 4.69
217 218 6.918892 TTTCAAATGGACTATCACATACGG 57.081 37.500 0.00 0.00 0.00 4.02
218 219 7.919690 ACATTTCAAATGGACTATCACATACG 58.080 34.615 14.70 0.00 0.00 3.06
219 220 9.113838 AGACATTTCAAATGGACTATCACATAC 57.886 33.333 14.70 0.00 0.00 2.39
221 222 9.685276 TTAGACATTTCAAATGGACTATCACAT 57.315 29.630 14.70 0.00 0.00 3.21
222 223 9.513906 TTTAGACATTTCAAATGGACTATCACA 57.486 29.630 14.70 1.25 0.00 3.58
228 229 8.912988 TGTCTTTTTAGACATTTCAAATGGACT 58.087 29.630 14.70 14.18 43.09 3.85
229 230 9.528018 TTGTCTTTTTAGACATTTCAAATGGAC 57.472 29.630 14.70 9.36 46.61 4.02
242 243 9.983804 CGTCCCTAAATATTTGTCTTTTTAGAC 57.016 33.333 11.05 0.00 34.90 2.59
243 244 9.169592 CCGTCCCTAAATATTTGTCTTTTTAGA 57.830 33.333 11.05 0.00 34.90 2.10
244 245 9.169592 TCCGTCCCTAAATATTTGTCTTTTTAG 57.830 33.333 11.05 0.00 33.47 1.85
245 246 9.169592 CTCCGTCCCTAAATATTTGTCTTTTTA 57.830 33.333 11.05 0.00 0.00 1.52
246 247 7.122204 CCTCCGTCCCTAAATATTTGTCTTTTT 59.878 37.037 11.05 0.00 0.00 1.94
247 248 6.602009 CCTCCGTCCCTAAATATTTGTCTTTT 59.398 38.462 11.05 0.00 0.00 2.27
248 249 6.120220 CCTCCGTCCCTAAATATTTGTCTTT 58.880 40.000 11.05 0.00 0.00 2.52
249 250 5.397559 CCCTCCGTCCCTAAATATTTGTCTT 60.398 44.000 11.05 0.00 0.00 3.01
250 251 4.102681 CCCTCCGTCCCTAAATATTTGTCT 59.897 45.833 11.05 0.00 0.00 3.41
251 252 4.102054 TCCCTCCGTCCCTAAATATTTGTC 59.898 45.833 11.05 0.00 0.00 3.18
252 253 4.042174 TCCCTCCGTCCCTAAATATTTGT 58.958 43.478 11.05 0.00 0.00 2.83
253 254 4.102681 ACTCCCTCCGTCCCTAAATATTTG 59.897 45.833 11.05 1.40 0.00 2.32
254 255 4.304659 ACTCCCTCCGTCCCTAAATATTT 58.695 43.478 5.89 5.89 0.00 1.40
255 256 3.937751 ACTCCCTCCGTCCCTAAATATT 58.062 45.455 0.00 0.00 0.00 1.28
256 257 3.632420 ACTCCCTCCGTCCCTAAATAT 57.368 47.619 0.00 0.00 0.00 1.28
257 258 3.723681 TCTACTCCCTCCGTCCCTAAATA 59.276 47.826 0.00 0.00 0.00 1.40
258 259 2.517127 TCTACTCCCTCCGTCCCTAAAT 59.483 50.000 0.00 0.00 0.00 1.40
259 260 1.925255 TCTACTCCCTCCGTCCCTAAA 59.075 52.381 0.00 0.00 0.00 1.85
260 261 1.600058 TCTACTCCCTCCGTCCCTAA 58.400 55.000 0.00 0.00 0.00 2.69
261 262 1.424302 CATCTACTCCCTCCGTCCCTA 59.576 57.143 0.00 0.00 0.00 3.53
262 263 0.186386 CATCTACTCCCTCCGTCCCT 59.814 60.000 0.00 0.00 0.00 4.20
263 264 0.185416 TCATCTACTCCCTCCGTCCC 59.815 60.000 0.00 0.00 0.00 4.46
264 265 1.143277 TCTCATCTACTCCCTCCGTCC 59.857 57.143 0.00 0.00 0.00 4.79
265 266 2.642154 TCTCATCTACTCCCTCCGTC 57.358 55.000 0.00 0.00 0.00 4.79
266 267 4.726035 TTATCTCATCTACTCCCTCCGT 57.274 45.455 0.00 0.00 0.00 4.69
267 268 5.949354 AGATTTATCTCATCTACTCCCTCCG 59.051 44.000 0.00 0.00 29.30 4.63
268 269 7.790782 AAGATTTATCTCATCTACTCCCTCC 57.209 40.000 0.00 0.00 35.76 4.30
269 270 9.705290 GAAAAGATTTATCTCATCTACTCCCTC 57.295 37.037 0.00 0.00 35.76 4.30
270 271 8.655901 GGAAAAGATTTATCTCATCTACTCCCT 58.344 37.037 0.00 0.00 35.76 4.20
271 272 7.880713 GGGAAAAGATTTATCTCATCTACTCCC 59.119 40.741 11.04 11.04 40.87 4.30
272 273 8.655901 AGGGAAAAGATTTATCTCATCTACTCC 58.344 37.037 0.00 0.00 35.76 3.85
273 274 9.705290 GAGGGAAAAGATTTATCTCATCTACTC 57.295 37.037 0.00 4.43 35.76 2.59
274 275 9.445973 AGAGGGAAAAGATTTATCTCATCTACT 57.554 33.333 0.00 0.00 35.76 2.57
275 276 9.487790 CAGAGGGAAAAGATTTATCTCATCTAC 57.512 37.037 0.00 0.00 35.76 2.59
276 277 9.218525 ACAGAGGGAAAAGATTTATCTCATCTA 57.781 33.333 0.00 0.00 35.76 1.98
277 278 8.100135 ACAGAGGGAAAAGATTTATCTCATCT 57.900 34.615 0.00 0.00 35.76 2.90
295 296 8.515414 CATTACTTCTTTTCCTTAAACAGAGGG 58.485 37.037 0.00 0.00 34.93 4.30
296 297 9.067986 ACATTACTTCTTTTCCTTAAACAGAGG 57.932 33.333 0.00 0.00 35.53 3.69
308 309 8.567948 TCCTTTCACATCACATTACTTCTTTTC 58.432 33.333 0.00 0.00 0.00 2.29
347 348 6.330278 GCTTTATGTTTATTGGTCCCTGAAC 58.670 40.000 0.00 0.00 0.00 3.18
359 360 3.560068 CCTCTTCCGCGCTTTATGTTTAT 59.440 43.478 5.56 0.00 0.00 1.40
399 400 1.816835 GTGGTCCGTGTGAGATACTGA 59.183 52.381 0.00 0.00 0.00 3.41
400 401 1.544246 TGTGGTCCGTGTGAGATACTG 59.456 52.381 0.00 0.00 0.00 2.74
401 402 1.919240 TGTGGTCCGTGTGAGATACT 58.081 50.000 0.00 0.00 0.00 2.12
402 403 2.736144 TTGTGGTCCGTGTGAGATAC 57.264 50.000 0.00 0.00 0.00 2.24
403 404 3.395639 GTTTTGTGGTCCGTGTGAGATA 58.604 45.455 0.00 0.00 0.00 1.98
411 412 3.782656 AGATTAGGTTTTGTGGTCCGT 57.217 42.857 0.00 0.00 0.00 4.69
429 430 1.401761 TGCGGCCGGTAAACTATAGA 58.598 50.000 29.38 0.00 0.00 1.98
490 513 6.017357 TGTCAACGTCGAATGAGCTAGTATAT 60.017 38.462 0.00 0.00 0.00 0.86
493 516 3.437741 TGTCAACGTCGAATGAGCTAGTA 59.562 43.478 0.00 0.00 0.00 1.82
494 517 2.228103 TGTCAACGTCGAATGAGCTAGT 59.772 45.455 0.00 0.00 0.00 2.57
495 518 2.594654 GTGTCAACGTCGAATGAGCTAG 59.405 50.000 0.00 0.00 0.00 3.42
563 601 8.417106 CCTGCTCTGATTCTGACTAAAATACTA 58.583 37.037 0.00 0.00 0.00 1.82
576 614 0.610174 TGCGTTCCTGCTCTGATTCT 59.390 50.000 0.00 0.00 35.36 2.40
728 778 2.202298 GCCATGGCGAAAACGACG 60.202 61.111 23.48 0.00 0.00 5.12
818 874 3.793801 GCGTGCACAACCTGTTTCATTTA 60.794 43.478 18.64 0.00 0.00 1.40
895 956 1.264288 CAAAGTCCAAACTCCAGACGC 59.736 52.381 0.00 0.00 33.48 5.19
896 957 1.873591 CCAAAGTCCAAACTCCAGACG 59.126 52.381 0.00 0.00 33.48 4.18
897 958 3.142174 CTCCAAAGTCCAAACTCCAGAC 58.858 50.000 0.00 0.00 33.48 3.51
899 960 3.181450 ACTCTCCAAAGTCCAAACTCCAG 60.181 47.826 0.00 0.00 33.48 3.86
903 986 3.933861 ACACTCTCCAAAGTCCAAACT 57.066 42.857 0.00 0.00 37.32 2.66
906 989 3.644966 ACAACACTCTCCAAAGTCCAA 57.355 42.857 0.00 0.00 0.00 3.53
960 1078 2.010670 CGTCGATCGACTCTGCTCT 58.989 57.895 37.12 0.00 42.54 4.09
962 1080 2.399356 TGCGTCGATCGACTCTGCT 61.399 57.895 37.12 0.00 42.54 4.24
964 1082 1.583967 GGTGCGTCGATCGACTCTG 60.584 63.158 37.12 26.06 42.54 3.35
965 1083 2.792599 GGTGCGTCGATCGACTCT 59.207 61.111 37.12 0.00 42.54 3.24
966 1084 2.648102 CGGTGCGTCGATCGACTC 60.648 66.667 37.12 32.23 42.54 3.36
967 1085 4.175489 CCGGTGCGTCGATCGACT 62.175 66.667 37.12 0.00 42.54 4.18
1257 1400 0.320771 CCGTGGAAGTGGAAGTGGAG 60.321 60.000 0.00 0.00 0.00 3.86
1300 1446 3.849951 GATCAGCTCGCCGGGGAA 61.850 66.667 22.77 7.94 0.00 3.97
1320 1466 0.678684 TCTGGTAGATGTCGACGGCA 60.679 55.000 3.85 3.85 0.00 5.69
1326 1472 0.738975 TCGCCTTCTGGTAGATGTCG 59.261 55.000 0.00 0.00 35.27 4.35
1491 1646 1.812525 GACGATCCAGCTCAGCTCA 59.187 57.895 0.00 0.00 36.40 4.26
1808 1966 1.334243 CGAACTCCTCGTACATCCTCC 59.666 57.143 0.00 0.00 42.89 4.30
1878 2036 2.359230 GAGCAGCACAGGTCCACC 60.359 66.667 0.00 0.00 0.00 4.61
1914 2072 2.264166 GCGAGGAAGCTGAGCACT 59.736 61.111 7.39 0.95 0.00 4.40
1939 2097 2.010582 GCCTGACTCTACCGGAGCAG 62.011 65.000 9.46 7.23 45.48 4.24
1960 2126 1.228800 AGATATCCGGACCCGACCC 60.229 63.158 6.12 0.00 42.83 4.46
1961 2127 0.826672 ACAGATATCCGGACCCGACC 60.827 60.000 6.12 0.00 42.83 4.79
1962 2128 0.314302 CACAGATATCCGGACCCGAC 59.686 60.000 6.12 0.00 42.83 4.79
1963 2129 1.461091 GCACAGATATCCGGACCCGA 61.461 60.000 6.12 0.00 42.83 5.14
1964 2130 1.006102 GCACAGATATCCGGACCCG 60.006 63.158 6.12 0.66 39.44 5.28
1982 2152 7.094975 TGGAAAAACTACATATTTCACGAGGTG 60.095 37.037 0.00 0.00 35.32 4.00
1994 2164 7.811236 CGTCTGTTCTAGTGGAAAAACTACATA 59.189 37.037 0.00 0.00 35.51 2.29
2032 2207 6.198029 CAGTATTCAGTAGTCAAATCTCTGCG 59.802 42.308 0.00 0.00 0.00 5.18
2166 2341 6.407752 CCTTTCCCCAGTGACTATATTTACGT 60.408 42.308 0.00 0.00 0.00 3.57
2167 2342 5.989777 CCTTTCCCCAGTGACTATATTTACG 59.010 44.000 0.00 0.00 0.00 3.18
2173 2348 3.654273 CCTCCTTTCCCCAGTGACTATA 58.346 50.000 0.00 0.00 0.00 1.31
2178 2353 1.151810 AGCCTCCTTTCCCCAGTGA 60.152 57.895 0.00 0.00 0.00 3.41
2182 2357 0.560688 AAAACAGCCTCCTTTCCCCA 59.439 50.000 0.00 0.00 0.00 4.96
2218 2393 3.251729 AGTTGATGCCATGCACGATATTC 59.748 43.478 0.00 0.00 43.04 1.75
2250 2431 9.290988 GATAGGATGAAGTAGATGTGTTCTCTA 57.709 37.037 0.00 0.00 35.79 2.43
2253 2434 6.268847 GGGATAGGATGAAGTAGATGTGTTCT 59.731 42.308 0.00 0.00 38.57 3.01
2304 2485 7.818930 ACTAAACTTAAAATGCATGGGTGATTG 59.181 33.333 0.00 0.00 0.00 2.67
2338 2519 6.267070 TGTTTAAAAGCTAAGACGGTTTTGG 58.733 36.000 10.01 0.00 42.50 3.28
2369 2550 9.988350 CAAATACGTAAACATATCAGAAAGCTT 57.012 29.630 0.00 0.00 0.00 3.74
2370 2551 8.122952 GCAAATACGTAAACATATCAGAAAGCT 58.877 33.333 0.00 0.00 0.00 3.74
2389 2570 6.985188 TCTTGTCACTAGGAATGCAAATAC 57.015 37.500 0.00 0.00 0.00 1.89
2397 2578 7.939039 TGTTGAAAAGATCTTGTCACTAGGAAT 59.061 33.333 25.10 0.00 36.61 3.01
2610 2796 6.378582 CCATGTACTAAATGGTGTGTGAAAC 58.621 40.000 3.10 0.00 39.87 2.78
2789 3002 5.009210 CCAACTAATAGTTCTCTCTCCTCCG 59.991 48.000 2.14 0.00 36.03 4.63
2791 3004 6.130569 TCCCAACTAATAGTTCTCTCTCCTC 58.869 44.000 2.14 0.00 36.03 3.71
2806 3019 4.033709 CTCCATTCCTCTCTCCCAACTAA 58.966 47.826 0.00 0.00 0.00 2.24
2829 3042 1.537638 AGACTATGCTAGGTCGATGCG 59.462 52.381 0.00 0.00 37.52 4.73
2893 3525 1.598130 GTGCTTTGAGACCTGGCGT 60.598 57.895 0.00 0.00 0.00 5.68
2894 3526 2.671177 CGTGCTTTGAGACCTGGCG 61.671 63.158 0.00 0.00 0.00 5.69
2895 3527 2.328099 CCGTGCTTTGAGACCTGGC 61.328 63.158 0.00 0.00 0.00 4.85
2896 3528 1.071471 ACCGTGCTTTGAGACCTGG 59.929 57.895 0.00 0.00 0.00 4.45
2897 3529 0.249868 TCACCGTGCTTTGAGACCTG 60.250 55.000 0.00 0.00 0.00 4.00
2898 3530 0.468226 TTCACCGTGCTTTGAGACCT 59.532 50.000 0.00 0.00 0.00 3.85
2899 3531 1.305201 TTTCACCGTGCTTTGAGACC 58.695 50.000 0.00 0.00 0.00 3.85
2900 3532 3.626028 ATTTTCACCGTGCTTTGAGAC 57.374 42.857 0.00 0.00 0.00 3.36
2901 3533 3.500680 GGTATTTTCACCGTGCTTTGAGA 59.499 43.478 0.00 0.00 0.00 3.27
2902 3534 3.252215 TGGTATTTTCACCGTGCTTTGAG 59.748 43.478 0.00 0.00 41.88 3.02
2903 3535 3.003897 GTGGTATTTTCACCGTGCTTTGA 59.996 43.478 0.00 0.00 41.88 2.69
2904 3536 3.004315 AGTGGTATTTTCACCGTGCTTTG 59.996 43.478 0.00 0.00 41.88 2.77
2905 3537 3.219281 AGTGGTATTTTCACCGTGCTTT 58.781 40.909 0.00 0.00 41.88 3.51
2906 3538 2.858745 AGTGGTATTTTCACCGTGCTT 58.141 42.857 0.00 0.00 41.88 3.91
2907 3539 2.561478 AGTGGTATTTTCACCGTGCT 57.439 45.000 0.00 0.00 41.88 4.40
2908 3540 2.676342 CCTAGTGGTATTTTCACCGTGC 59.324 50.000 0.00 0.00 41.88 5.34
2909 3541 2.676342 GCCTAGTGGTATTTTCACCGTG 59.324 50.000 0.00 0.00 41.88 4.94
2910 3542 2.355412 GGCCTAGTGGTATTTTCACCGT 60.355 50.000 0.00 0.00 41.88 4.83
2911 3543 2.285977 GGCCTAGTGGTATTTTCACCG 58.714 52.381 0.00 0.00 41.88 4.94
2912 3544 3.359695 TGGCCTAGTGGTATTTTCACC 57.640 47.619 3.32 0.00 39.20 4.02
2913 3545 6.120220 AGTATTGGCCTAGTGGTATTTTCAC 58.880 40.000 3.32 0.00 35.27 3.18
2914 3546 6.321821 AGTATTGGCCTAGTGGTATTTTCA 57.678 37.500 3.32 0.00 35.27 2.69
2915 3547 6.427242 GCTAGTATTGGCCTAGTGGTATTTTC 59.573 42.308 3.32 0.00 35.40 2.29
2916 3548 6.101296 AGCTAGTATTGGCCTAGTGGTATTTT 59.899 38.462 3.32 0.00 35.40 1.82
2917 3549 5.607171 AGCTAGTATTGGCCTAGTGGTATTT 59.393 40.000 3.32 0.00 35.40 1.40
2918 3550 5.155905 AGCTAGTATTGGCCTAGTGGTATT 58.844 41.667 3.32 0.00 35.40 1.89
2919 3551 4.753186 AGCTAGTATTGGCCTAGTGGTAT 58.247 43.478 3.32 0.00 35.40 2.73
2920 3552 4.150359 GAGCTAGTATTGGCCTAGTGGTA 58.850 47.826 3.32 0.00 35.40 3.25
2921 3553 2.966516 GAGCTAGTATTGGCCTAGTGGT 59.033 50.000 3.32 0.00 35.40 4.16
2922 3554 2.965831 TGAGCTAGTATTGGCCTAGTGG 59.034 50.000 3.32 0.00 35.40 4.00
2923 3555 4.672587 TTGAGCTAGTATTGGCCTAGTG 57.327 45.455 3.32 0.00 35.40 2.74
2924 3556 5.896073 ATTTGAGCTAGTATTGGCCTAGT 57.104 39.130 3.32 0.00 35.40 2.57
2925 3557 6.426328 CAGAATTTGAGCTAGTATTGGCCTAG 59.574 42.308 3.32 0.00 35.94 3.02
2926 3558 6.291377 CAGAATTTGAGCTAGTATTGGCCTA 58.709 40.000 3.32 0.00 0.00 3.93
2927 3559 5.128919 CAGAATTTGAGCTAGTATTGGCCT 58.871 41.667 3.32 0.00 0.00 5.19
2928 3560 5.429957 CAGAATTTGAGCTAGTATTGGCC 57.570 43.478 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.