Multiple sequence alignment - TraesCS5B01G493300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G493300 chr5B 100.000 3827 0 0 1 3827 661359585 661355759 0.000000e+00 7068.0
1 TraesCS5B01G493300 chr5B 100.000 36 0 0 310 345 661359242 661359207 2.470000e-07 67.6
2 TraesCS5B01G493300 chr5B 100.000 36 0 0 344 379 661359276 661359241 2.470000e-07 67.6
3 TraesCS5B01G493300 chr5D 91.919 2945 187 18 907 3811 526292393 526289460 0.000000e+00 4072.0
4 TraesCS5B01G493300 chr5D 93.966 348 16 3 1 345 526293007 526292662 4.380000e-144 521.0
5 TraesCS5B01G493300 chr5D 87.730 326 28 7 349 672 526292692 526292377 1.680000e-98 370.0
6 TraesCS5B01G493300 chr5D 92.157 51 4 0 666 716 386677580 386677630 5.300000e-09 73.1
7 TraesCS5B01G493300 chr5A 92.052 2466 154 17 907 3340 653407535 653405080 0.000000e+00 3430.0
8 TraesCS5B01G493300 chr5A 93.651 756 24 1 3056 3811 653405083 653404352 0.000000e+00 1109.0
9 TraesCS5B01G493300 chr5A 93.678 348 17 3 1 345 653408151 653407806 2.040000e-142 516.0
10 TraesCS5B01G493300 chr5A 88.415 328 24 8 349 672 653407836 653407519 2.160000e-102 383.0
11 TraesCS5B01G493300 chr5A 93.671 79 5 0 2300 2378 626021899 626021821 6.720000e-23 119.0
12 TraesCS5B01G493300 chr2A 83.642 703 80 18 2562 3243 706228685 706227997 2.510000e-176 628.0
13 TraesCS5B01G493300 chr2A 95.745 47 2 0 670 716 766649579 766649533 4.100000e-10 76.8
14 TraesCS5B01G493300 chr7A 94.937 79 4 0 2300 2378 419270328 419270250 1.440000e-24 124.0
15 TraesCS5B01G493300 chr7B 92.308 52 4 0 665 716 634865119 634865068 1.470000e-09 75.0
16 TraesCS5B01G493300 chr7B 93.478 46 3 0 671 716 4202854 4202809 6.860000e-08 69.4
17 TraesCS5B01G493300 chr7B 93.478 46 3 0 671 716 594532504 594532459 6.860000e-08 69.4
18 TraesCS5B01G493300 chr7B 93.478 46 3 0 671 716 608863577 608863622 6.860000e-08 69.4
19 TraesCS5B01G493300 chr4B 95.556 45 2 0 672 716 645075468 645075424 5.300000e-09 73.1
20 TraesCS5B01G493300 chr3D 90.566 53 4 1 665 716 481554425 481554477 6.860000e-08 69.4
21 TraesCS5B01G493300 chr3A 93.478 46 3 0 671 716 692985906 692985861 6.860000e-08 69.4
22 TraesCS5B01G493300 chr2B 100.000 28 0 0 772 799 690731977 690731950 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G493300 chr5B 661355759 661359585 3826 True 2401.066667 7068 100.000 1 3827 3 chr5B.!!$R1 3826
1 TraesCS5B01G493300 chr5D 526289460 526293007 3547 True 1654.333333 4072 91.205 1 3811 3 chr5D.!!$R1 3810
2 TraesCS5B01G493300 chr5A 653404352 653408151 3799 True 1359.500000 3430 91.949 1 3811 4 chr5A.!!$R2 3810
3 TraesCS5B01G493300 chr2A 706227997 706228685 688 True 628.000000 628 83.642 2562 3243 1 chr2A.!!$R1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 350 0.032130 TTGATCATAGCGAGGTCGGC 59.968 55.0 0.00 0.0 40.23 5.54 F
799 806 0.036952 AGGCACCTGTGATGACTTCG 60.037 55.0 0.51 0.0 27.74 3.79 F
800 807 0.320771 GGCACCTGTGATGACTTCGT 60.321 55.0 0.51 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2269 2288 0.694771 TCCCTGCTGATGCTTTCACT 59.305 50.000 0.00 0.00 40.48 3.41 R
2769 2799 0.108615 AGCGATGGAAACGACTCCTG 60.109 55.000 8.63 1.59 36.35 3.86 R
2883 2917 2.390938 CTGCATGTGCTGTTGAAGTTG 58.609 47.619 6.55 0.00 42.66 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.293498 CCTTAGGATCCCGATGGCG 59.707 63.158 8.55 0.00 37.24 5.69
124 125 1.962807 CTCCTGCTGATCAGAGTAGGG 59.037 57.143 27.04 17.45 43.97 3.53
181 182 4.514401 CCCTGTTCTGGGTAACTCATTAC 58.486 47.826 6.60 0.00 42.25 1.89
201 202 0.665835 AGCTTAGGTCTCGATCGCTG 59.334 55.000 11.09 5.91 0.00 5.18
203 204 0.658829 CTTAGGTCTCGATCGCTGCG 60.659 60.000 17.25 17.25 0.00 5.18
258 259 5.959618 AACACAGCTACCAAATTAGTTCC 57.040 39.130 0.00 0.00 0.00 3.62
265 266 5.250774 AGCTACCAAATTAGTTCCAAGGAGA 59.749 40.000 0.00 0.00 0.00 3.71
276 277 6.650427 AGTTCCAAGGAGAATTGTAAAACC 57.350 37.500 0.00 0.00 0.00 3.27
291 292 7.979115 TTGTAAAACCTTGTGAGATTTTTCG 57.021 32.000 0.00 0.00 0.00 3.46
292 293 6.500041 TGTAAAACCTTGTGAGATTTTTCGG 58.500 36.000 0.00 0.00 0.00 4.30
293 294 3.643159 AACCTTGTGAGATTTTTCGGC 57.357 42.857 0.00 0.00 0.00 5.54
294 295 2.863809 ACCTTGTGAGATTTTTCGGCT 58.136 42.857 0.00 0.00 0.00 5.52
296 297 2.095059 CCTTGTGAGATTTTTCGGCTGG 60.095 50.000 0.00 0.00 0.00 4.85
297 298 2.559698 TGTGAGATTTTTCGGCTGGA 57.440 45.000 0.00 0.00 0.00 3.86
298 299 2.426522 TGTGAGATTTTTCGGCTGGAG 58.573 47.619 0.00 0.00 0.00 3.86
322 325 0.108992 TCCAGTTCGGCGTGTATGTC 60.109 55.000 6.85 0.00 33.14 3.06
339 342 2.267426 TGTCGGTGTTTGATCATAGCG 58.733 47.619 15.98 15.98 35.59 4.26
340 343 2.094442 TGTCGGTGTTTGATCATAGCGA 60.094 45.455 18.97 18.97 40.21 4.93
341 344 2.535984 GTCGGTGTTTGATCATAGCGAG 59.464 50.000 21.66 5.01 42.61 5.03
342 345 1.860950 CGGTGTTTGATCATAGCGAGG 59.139 52.381 16.72 0.00 36.26 4.63
343 346 2.738643 CGGTGTTTGATCATAGCGAGGT 60.739 50.000 16.72 0.00 36.26 3.85
344 347 2.866762 GGTGTTTGATCATAGCGAGGTC 59.133 50.000 0.00 0.00 0.00 3.85
345 348 2.535984 GTGTTTGATCATAGCGAGGTCG 59.464 50.000 0.00 0.00 43.27 4.79
346 349 2.128035 GTTTGATCATAGCGAGGTCGG 58.872 52.381 0.00 0.00 40.23 4.79
347 350 0.032130 TTGATCATAGCGAGGTCGGC 59.968 55.000 0.00 0.00 40.23 5.54
348 351 1.442857 GATCATAGCGAGGTCGGCG 60.443 63.158 0.00 0.00 40.23 6.46
349 352 2.131294 GATCATAGCGAGGTCGGCGT 62.131 60.000 6.85 0.00 40.23 5.68
350 353 2.407846 ATCATAGCGAGGTCGGCGTG 62.408 60.000 6.85 0.00 40.23 5.34
351 354 3.138798 ATAGCGAGGTCGGCGTGT 61.139 61.111 6.85 0.00 40.23 4.49
352 355 1.820906 ATAGCGAGGTCGGCGTGTA 60.821 57.895 6.85 0.00 40.23 2.90
353 356 1.170919 ATAGCGAGGTCGGCGTGTAT 61.171 55.000 6.85 0.00 40.23 2.29
354 357 2.055310 TAGCGAGGTCGGCGTGTATG 62.055 60.000 6.85 0.00 40.23 2.39
355 358 2.488355 CGAGGTCGGCGTGTATGT 59.512 61.111 6.85 0.00 35.37 2.29
356 359 1.585521 CGAGGTCGGCGTGTATGTC 60.586 63.158 6.85 0.00 35.37 3.06
357 360 1.585521 GAGGTCGGCGTGTATGTCG 60.586 63.158 6.85 0.00 38.57 4.35
358 361 2.581409 GGTCGGCGTGTATGTCGG 60.581 66.667 6.85 0.00 37.60 4.79
359 362 2.180017 GTCGGCGTGTATGTCGGT 59.820 61.111 6.85 0.00 37.60 4.69
360 363 2.156446 GTCGGCGTGTATGTCGGTG 61.156 63.158 6.85 0.00 37.60 4.94
361 364 2.126228 CGGCGTGTATGTCGGTGT 60.126 61.111 0.00 0.00 32.26 4.16
362 365 1.735198 CGGCGTGTATGTCGGTGTT 60.735 57.895 0.00 0.00 32.26 3.32
363 366 1.286354 CGGCGTGTATGTCGGTGTTT 61.286 55.000 0.00 0.00 32.26 2.83
364 367 0.165079 GGCGTGTATGTCGGTGTTTG 59.835 55.000 0.00 0.00 0.00 2.93
365 368 1.141645 GCGTGTATGTCGGTGTTTGA 58.858 50.000 0.00 0.00 0.00 2.69
366 369 1.730064 GCGTGTATGTCGGTGTTTGAT 59.270 47.619 0.00 0.00 0.00 2.57
367 370 2.222729 GCGTGTATGTCGGTGTTTGATC 60.223 50.000 0.00 0.00 0.00 2.92
368 371 2.990514 CGTGTATGTCGGTGTTTGATCA 59.009 45.455 0.00 0.00 0.00 2.92
369 372 3.616821 CGTGTATGTCGGTGTTTGATCAT 59.383 43.478 0.00 0.00 0.00 2.45
370 373 4.801516 CGTGTATGTCGGTGTTTGATCATA 59.198 41.667 0.00 0.00 0.00 2.15
371 374 5.051708 CGTGTATGTCGGTGTTTGATCATAG 60.052 44.000 0.00 0.00 0.00 2.23
372 375 4.808895 TGTATGTCGGTGTTTGATCATAGC 59.191 41.667 0.00 0.00 0.00 2.97
373 376 2.267426 TGTCGGTGTTTGATCATAGCG 58.733 47.619 15.98 15.98 35.59 4.26
376 379 1.860950 CGGTGTTTGATCATAGCGAGG 59.139 52.381 16.72 0.00 36.26 4.63
385 388 3.067320 TGATCATAGCGAGGTCTTGACAG 59.933 47.826 0.00 0.00 0.00 3.51
388 391 3.067320 TCATAGCGAGGTCTTGACAGATG 59.933 47.826 3.08 0.00 0.00 2.90
389 392 1.261480 AGCGAGGTCTTGACAGATGT 58.739 50.000 3.08 0.00 0.00 3.06
390 393 2.447443 AGCGAGGTCTTGACAGATGTA 58.553 47.619 3.08 0.00 0.00 2.29
391 394 2.425312 AGCGAGGTCTTGACAGATGTAG 59.575 50.000 3.08 0.00 0.00 2.74
481 488 2.463653 CACAAATTGCACACGTTTCTCG 59.536 45.455 0.00 0.00 46.00 4.04
587 594 1.786579 GCGTGGTTTCTGTGCAAAATC 59.213 47.619 0.00 0.00 0.00 2.17
614 621 0.106918 TCGCCCGGCTAAATTTCCAT 60.107 50.000 8.05 0.00 0.00 3.41
617 624 1.269723 GCCCGGCTAAATTTCCATAGC 59.730 52.381 0.71 0.00 42.98 2.97
621 628 2.880890 CGGCTAAATTTCCATAGCTGCT 59.119 45.455 7.57 7.57 42.67 4.24
637 644 1.130749 CTGCTCAGTTCTGCTTGCATC 59.869 52.381 12.22 0.00 34.90 3.91
656 663 4.393155 TGCACGGCTTCGCTCCAT 62.393 61.111 0.00 0.00 37.41 3.41
657 664 2.202878 GCACGGCTTCGCTCCATA 60.203 61.111 0.00 0.00 37.41 2.74
658 665 1.813753 GCACGGCTTCGCTCCATAA 60.814 57.895 0.00 0.00 37.41 1.90
659 666 2.006772 CACGGCTTCGCTCCATAAC 58.993 57.895 0.00 0.00 37.41 1.89
660 667 1.518572 ACGGCTTCGCTCCATAACG 60.519 57.895 0.00 0.00 37.41 3.18
661 668 2.871427 CGGCTTCGCTCCATAACGC 61.871 63.158 0.00 0.00 0.00 4.84
662 669 1.813753 GGCTTCGCTCCATAACGCA 60.814 57.895 0.00 0.00 0.00 5.24
663 670 1.348594 GCTTCGCTCCATAACGCAC 59.651 57.895 0.00 0.00 0.00 5.34
664 671 1.358725 GCTTCGCTCCATAACGCACA 61.359 55.000 0.00 0.00 0.00 4.57
665 672 1.290203 CTTCGCTCCATAACGCACAT 58.710 50.000 0.00 0.00 0.00 3.21
666 673 1.004610 CTTCGCTCCATAACGCACATG 60.005 52.381 0.00 0.00 0.00 3.21
667 674 0.108377 TCGCTCCATAACGCACATGT 60.108 50.000 0.00 0.00 0.00 3.21
668 675 0.726827 CGCTCCATAACGCACATGTT 59.273 50.000 0.00 0.00 35.86 2.71
669 676 1.130373 CGCTCCATAACGCACATGTTT 59.870 47.619 0.00 0.00 33.32 2.83
670 677 2.518949 GCTCCATAACGCACATGTTTG 58.481 47.619 0.00 0.00 33.32 2.93
671 678 2.518949 CTCCATAACGCACATGTTTGC 58.481 47.619 0.00 0.00 39.28 3.68
672 679 1.882623 TCCATAACGCACATGTTTGCA 59.117 42.857 8.80 0.00 43.15 4.08
673 680 2.491298 TCCATAACGCACATGTTTGCAT 59.509 40.909 8.80 0.17 43.15 3.96
674 681 3.056962 TCCATAACGCACATGTTTGCATT 60.057 39.130 8.80 2.40 43.15 3.56
675 682 4.156739 TCCATAACGCACATGTTTGCATTA 59.843 37.500 8.80 4.49 43.15 1.90
676 683 5.042593 CCATAACGCACATGTTTGCATTAT 58.957 37.500 8.80 6.48 40.54 1.28
677 684 5.519566 CCATAACGCACATGTTTGCATTATT 59.480 36.000 6.83 0.29 37.54 1.40
678 685 6.035866 CCATAACGCACATGTTTGCATTATTT 59.964 34.615 6.83 0.00 37.54 1.40
679 686 5.921004 AACGCACATGTTTGCATTATTTT 57.079 30.435 8.80 0.00 43.15 1.82
680 687 5.921004 ACGCACATGTTTGCATTATTTTT 57.079 30.435 8.80 0.00 43.15 1.94
681 688 5.677936 ACGCACATGTTTGCATTATTTTTG 58.322 33.333 8.80 0.00 43.15 2.44
682 689 5.464722 ACGCACATGTTTGCATTATTTTTGA 59.535 32.000 8.80 0.00 43.15 2.69
683 690 6.018425 ACGCACATGTTTGCATTATTTTTGAA 60.018 30.769 8.80 0.00 43.15 2.69
684 691 7.016466 CGCACATGTTTGCATTATTTTTGAAT 58.984 30.769 8.80 0.00 43.15 2.57
685 692 7.534578 CGCACATGTTTGCATTATTTTTGAATT 59.465 29.630 8.80 0.00 43.15 2.17
686 693 9.182933 GCACATGTTTGCATTATTTTTGAATTT 57.817 25.926 0.00 0.00 42.49 1.82
703 710 8.776376 TTTGAATTTATTTCAGGATTTCTGGC 57.224 30.769 0.00 0.00 44.90 4.85
704 711 7.479352 TGAATTTATTTCAGGATTTCTGGCA 57.521 32.000 0.00 0.00 43.53 4.92
705 712 7.905265 TGAATTTATTTCAGGATTTCTGGCAA 58.095 30.769 0.00 0.00 43.53 4.52
706 713 8.542080 TGAATTTATTTCAGGATTTCTGGCAAT 58.458 29.630 0.00 0.00 43.53 3.56
707 714 8.726870 AATTTATTTCAGGATTTCTGGCAATG 57.273 30.769 0.00 0.00 43.53 2.82
708 715 3.598019 TTTCAGGATTTCTGGCAATGC 57.402 42.857 0.00 0.00 43.53 3.56
709 716 1.097232 TCAGGATTTCTGGCAATGCG 58.903 50.000 0.00 0.00 43.53 4.73
710 717 0.526954 CAGGATTTCTGGCAATGCGC 60.527 55.000 0.00 0.00 39.76 6.09
711 718 1.587088 GGATTTCTGGCAATGCGCG 60.587 57.895 0.00 0.00 43.84 6.86
712 719 1.137404 GATTTCTGGCAATGCGCGT 59.863 52.632 8.43 0.00 43.84 6.01
713 720 0.456653 GATTTCTGGCAATGCGCGTT 60.457 50.000 9.57 9.57 43.84 4.84
714 721 0.456653 ATTTCTGGCAATGCGCGTTC 60.457 50.000 12.97 7.52 43.84 3.95
715 722 1.790090 TTTCTGGCAATGCGCGTTCA 61.790 50.000 12.97 7.74 43.84 3.18
716 723 1.585267 TTCTGGCAATGCGCGTTCAT 61.585 50.000 12.97 0.00 43.84 2.57
717 724 1.153978 CTGGCAATGCGCGTTCATT 60.154 52.632 12.97 7.09 43.84 2.57
718 725 0.098552 CTGGCAATGCGCGTTCATTA 59.901 50.000 12.97 0.00 43.84 1.90
719 726 0.737804 TGGCAATGCGCGTTCATTAT 59.262 45.000 12.97 0.00 43.84 1.28
720 727 1.133982 TGGCAATGCGCGTTCATTATT 59.866 42.857 12.97 0.00 43.84 1.40
721 728 2.192624 GGCAATGCGCGTTCATTATTT 58.807 42.857 12.97 0.00 43.84 1.40
722 729 2.602660 GGCAATGCGCGTTCATTATTTT 59.397 40.909 12.97 0.00 43.84 1.82
723 730 3.061965 GGCAATGCGCGTTCATTATTTTT 59.938 39.130 12.97 0.00 43.84 1.94
724 731 4.014685 GCAATGCGCGTTCATTATTTTTG 58.985 39.130 12.97 0.00 35.12 2.44
725 732 4.567127 CAATGCGCGTTCATTATTTTTGG 58.433 39.130 12.97 0.00 35.12 3.28
726 733 3.560902 TGCGCGTTCATTATTTTTGGA 57.439 38.095 8.43 0.00 0.00 3.53
727 734 4.103365 TGCGCGTTCATTATTTTTGGAT 57.897 36.364 8.43 0.00 0.00 3.41
728 735 4.489810 TGCGCGTTCATTATTTTTGGATT 58.510 34.783 8.43 0.00 0.00 3.01
729 736 4.926238 TGCGCGTTCATTATTTTTGGATTT 59.074 33.333 8.43 0.00 0.00 2.17
730 737 6.093404 TGCGCGTTCATTATTTTTGGATTTA 58.907 32.000 8.43 0.00 0.00 1.40
731 738 6.754209 TGCGCGTTCATTATTTTTGGATTTAT 59.246 30.769 8.43 0.00 0.00 1.40
732 739 7.276658 TGCGCGTTCATTATTTTTGGATTTATT 59.723 29.630 8.43 0.00 0.00 1.40
733 740 8.113675 GCGCGTTCATTATTTTTGGATTTATTT 58.886 29.630 8.43 0.00 0.00 1.40
734 741 9.618410 CGCGTTCATTATTTTTGGATTTATTTC 57.382 29.630 0.00 0.00 0.00 2.17
747 754 8.844441 TTGGATTTATTTCTAAATTTACGGCG 57.156 30.769 4.80 4.80 37.61 6.46
748 755 8.211116 TGGATTTATTTCTAAATTTACGGCGA 57.789 30.769 16.62 0.00 37.61 5.54
749 756 8.842280 TGGATTTATTTCTAAATTTACGGCGAT 58.158 29.630 16.62 0.00 37.61 4.58
750 757 9.113876 GGATTTATTTCTAAATTTACGGCGATG 57.886 33.333 16.62 0.00 37.61 3.84
751 758 7.901874 TTTATTTCTAAATTTACGGCGATGC 57.098 32.000 16.62 0.00 0.00 3.91
752 759 3.579147 TTCTAAATTTACGGCGATGCG 57.421 42.857 16.62 0.00 0.00 4.73
765 772 1.284657 CGATGCGCATTCAGAGAAGT 58.715 50.000 26.12 0.00 0.00 3.01
766 773 1.662629 CGATGCGCATTCAGAGAAGTT 59.337 47.619 26.12 0.00 0.00 2.66
767 774 2.094894 CGATGCGCATTCAGAGAAGTTT 59.905 45.455 26.12 0.00 0.00 2.66
768 775 3.425359 CGATGCGCATTCAGAGAAGTTTT 60.425 43.478 26.12 0.00 0.00 2.43
769 776 3.988379 TGCGCATTCAGAGAAGTTTTT 57.012 38.095 5.66 0.00 0.00 1.94
770 777 3.888934 TGCGCATTCAGAGAAGTTTTTC 58.111 40.909 5.66 0.00 0.00 2.29
771 778 3.565482 TGCGCATTCAGAGAAGTTTTTCT 59.435 39.130 5.66 0.00 46.22 2.52
783 790 5.172205 AGAAGTTTTTCTCGACTATGAGGC 58.828 41.667 0.00 0.00 39.46 4.70
784 791 4.537135 AGTTTTTCTCGACTATGAGGCA 57.463 40.909 0.00 0.00 36.61 4.75
785 792 4.246458 AGTTTTTCTCGACTATGAGGCAC 58.754 43.478 0.00 0.00 36.61 5.01
786 793 2.961526 TTTCTCGACTATGAGGCACC 57.038 50.000 0.00 0.00 36.61 5.01
787 794 2.145397 TTCTCGACTATGAGGCACCT 57.855 50.000 0.00 0.00 36.61 4.00
788 795 1.393603 TCTCGACTATGAGGCACCTG 58.606 55.000 0.00 0.00 36.61 4.00
789 796 1.107114 CTCGACTATGAGGCACCTGT 58.893 55.000 0.00 0.00 32.18 4.00
790 797 0.817654 TCGACTATGAGGCACCTGTG 59.182 55.000 0.00 0.00 0.00 3.66
791 798 0.817654 CGACTATGAGGCACCTGTGA 59.182 55.000 0.51 0.00 0.00 3.58
792 799 1.410517 CGACTATGAGGCACCTGTGAT 59.589 52.381 0.51 0.00 0.00 3.06
793 800 2.800985 CGACTATGAGGCACCTGTGATG 60.801 54.545 0.51 0.00 0.00 3.07
794 801 2.432146 GACTATGAGGCACCTGTGATGA 59.568 50.000 0.51 0.00 0.00 2.92
795 802 2.169352 ACTATGAGGCACCTGTGATGAC 59.831 50.000 0.51 0.00 0.00 3.06
796 803 1.283347 ATGAGGCACCTGTGATGACT 58.717 50.000 0.51 0.00 38.49 3.41
797 804 1.059098 TGAGGCACCTGTGATGACTT 58.941 50.000 0.51 0.00 34.75 3.01
798 805 1.002430 TGAGGCACCTGTGATGACTTC 59.998 52.381 0.51 0.00 34.75 3.01
799 806 0.036952 AGGCACCTGTGATGACTTCG 60.037 55.000 0.51 0.00 27.74 3.79
800 807 0.320771 GGCACCTGTGATGACTTCGT 60.321 55.000 0.51 0.00 0.00 3.85
801 808 0.792640 GCACCTGTGATGACTTCGTG 59.207 55.000 0.51 0.00 0.00 4.35
802 809 1.605457 GCACCTGTGATGACTTCGTGA 60.605 52.381 0.51 0.00 0.00 4.35
803 810 2.332104 CACCTGTGATGACTTCGTGAG 58.668 52.381 0.00 0.00 0.00 3.51
804 811 2.029918 CACCTGTGATGACTTCGTGAGA 60.030 50.000 0.00 0.00 39.20 3.27
805 812 2.828520 ACCTGTGATGACTTCGTGAGAT 59.171 45.455 0.00 0.00 41.60 2.75
806 813 3.185330 CCTGTGATGACTTCGTGAGATG 58.815 50.000 0.00 0.00 41.60 2.90
807 814 2.602211 CTGTGATGACTTCGTGAGATGC 59.398 50.000 0.00 0.00 41.60 3.91
808 815 2.232208 TGTGATGACTTCGTGAGATGCT 59.768 45.455 0.00 0.00 41.60 3.79
809 816 2.857152 GTGATGACTTCGTGAGATGCTC 59.143 50.000 0.00 0.00 41.60 4.26
810 817 2.493278 TGATGACTTCGTGAGATGCTCA 59.507 45.455 0.00 0.00 41.60 4.26
811 818 3.131755 TGATGACTTCGTGAGATGCTCAT 59.868 43.478 0.00 0.00 42.73 2.90
812 819 4.339247 TGATGACTTCGTGAGATGCTCATA 59.661 41.667 0.00 0.00 42.73 2.15
813 820 4.298744 TGACTTCGTGAGATGCTCATAG 57.701 45.455 0.00 2.44 42.73 2.23
814 821 3.067320 TGACTTCGTGAGATGCTCATAGG 59.933 47.826 0.00 0.00 42.73 2.57
815 822 2.363680 ACTTCGTGAGATGCTCATAGGG 59.636 50.000 0.00 0.00 42.73 3.53
816 823 2.073252 TCGTGAGATGCTCATAGGGT 57.927 50.000 0.00 0.00 42.73 4.34
817 824 3.223674 TCGTGAGATGCTCATAGGGTA 57.776 47.619 0.00 0.00 42.73 3.69
818 825 3.149981 TCGTGAGATGCTCATAGGGTAG 58.850 50.000 0.00 0.00 42.73 3.18
819 826 2.230025 CGTGAGATGCTCATAGGGTAGG 59.770 54.545 0.00 0.00 42.73 3.18
820 827 2.564947 GTGAGATGCTCATAGGGTAGGG 59.435 54.545 0.00 0.00 42.73 3.53
821 828 2.180086 TGAGATGCTCATAGGGTAGGGT 59.820 50.000 0.00 0.00 35.39 4.34
822 829 3.401342 TGAGATGCTCATAGGGTAGGGTA 59.599 47.826 0.00 0.00 35.39 3.69
823 830 4.045974 TGAGATGCTCATAGGGTAGGGTAT 59.954 45.833 0.00 0.00 35.39 2.73
824 831 5.026790 GAGATGCTCATAGGGTAGGGTATT 58.973 45.833 0.00 0.00 0.00 1.89
825 832 5.026790 AGATGCTCATAGGGTAGGGTATTC 58.973 45.833 0.00 0.00 0.00 1.75
826 833 3.162666 TGCTCATAGGGTAGGGTATTCG 58.837 50.000 0.00 0.00 0.00 3.34
827 834 3.163467 GCTCATAGGGTAGGGTATTCGT 58.837 50.000 0.00 0.00 0.00 3.85
828 835 3.056749 GCTCATAGGGTAGGGTATTCGTG 60.057 52.174 0.00 0.00 0.00 4.35
829 836 4.150359 CTCATAGGGTAGGGTATTCGTGT 58.850 47.826 0.00 0.00 0.00 4.49
830 837 3.893200 TCATAGGGTAGGGTATTCGTGTG 59.107 47.826 0.00 0.00 0.00 3.82
831 838 2.242882 AGGGTAGGGTATTCGTGTGT 57.757 50.000 0.00 0.00 0.00 3.72
832 839 2.543635 AGGGTAGGGTATTCGTGTGTT 58.456 47.619 0.00 0.00 0.00 3.32
833 840 2.498885 AGGGTAGGGTATTCGTGTGTTC 59.501 50.000 0.00 0.00 0.00 3.18
834 841 2.533266 GGTAGGGTATTCGTGTGTTCG 58.467 52.381 0.00 0.00 0.00 3.95
835 842 2.094545 GGTAGGGTATTCGTGTGTTCGT 60.095 50.000 0.00 0.00 0.00 3.85
836 843 3.128589 GGTAGGGTATTCGTGTGTTCGTA 59.871 47.826 0.00 0.00 0.00 3.43
837 844 4.202050 GGTAGGGTATTCGTGTGTTCGTAT 60.202 45.833 0.00 0.00 0.00 3.06
838 845 3.777478 AGGGTATTCGTGTGTTCGTATG 58.223 45.455 0.00 0.00 0.00 2.39
839 846 3.444742 AGGGTATTCGTGTGTTCGTATGA 59.555 43.478 0.00 0.00 0.00 2.15
840 847 4.082081 AGGGTATTCGTGTGTTCGTATGAA 60.082 41.667 0.00 0.00 0.00 2.57
841 848 4.807304 GGGTATTCGTGTGTTCGTATGAAT 59.193 41.667 0.00 0.00 36.29 2.57
842 849 5.276678 GGGTATTCGTGTGTTCGTATGAATG 60.277 44.000 0.00 0.00 36.29 2.67
843 850 5.517411 GGTATTCGTGTGTTCGTATGAATGA 59.483 40.000 0.00 0.00 36.29 2.57
844 851 5.702622 ATTCGTGTGTTCGTATGAATGAG 57.297 39.130 0.00 0.00 36.29 2.90
845 852 4.168922 TCGTGTGTTCGTATGAATGAGT 57.831 40.909 0.00 0.00 36.29 3.41
846 853 3.917985 TCGTGTGTTCGTATGAATGAGTG 59.082 43.478 0.00 0.00 36.29 3.51
847 854 3.673338 CGTGTGTTCGTATGAATGAGTGT 59.327 43.478 0.00 0.00 36.29 3.55
848 855 4.854839 CGTGTGTTCGTATGAATGAGTGTA 59.145 41.667 0.00 0.00 36.29 2.90
849 856 5.515270 CGTGTGTTCGTATGAATGAGTGTAT 59.485 40.000 0.00 0.00 36.29 2.29
850 857 6.506357 CGTGTGTTCGTATGAATGAGTGTATG 60.506 42.308 0.00 0.00 36.29 2.39
851 858 6.310467 GTGTGTTCGTATGAATGAGTGTATGT 59.690 38.462 0.00 0.00 36.29 2.29
852 859 6.310224 TGTGTTCGTATGAATGAGTGTATGTG 59.690 38.462 0.00 0.00 36.29 3.21
853 860 6.310467 GTGTTCGTATGAATGAGTGTATGTGT 59.690 38.462 0.00 0.00 36.29 3.72
854 861 6.310224 TGTTCGTATGAATGAGTGTATGTGTG 59.690 38.462 0.00 0.00 36.29 3.82
855 862 5.961272 TCGTATGAATGAGTGTATGTGTGT 58.039 37.500 0.00 0.00 0.00 3.72
856 863 7.090953 TCGTATGAATGAGTGTATGTGTGTA 57.909 36.000 0.00 0.00 0.00 2.90
857 864 7.712797 TCGTATGAATGAGTGTATGTGTGTAT 58.287 34.615 0.00 0.00 0.00 2.29
858 865 8.842280 TCGTATGAATGAGTGTATGTGTGTATA 58.158 33.333 0.00 0.00 0.00 1.47
859 866 9.626045 CGTATGAATGAGTGTATGTGTGTATAT 57.374 33.333 0.00 0.00 0.00 0.86
865 872 9.645059 AATGAGTGTATGTGTGTATATATCAGC 57.355 33.333 0.00 0.00 0.00 4.26
866 873 7.305474 TGAGTGTATGTGTGTATATATCAGCG 58.695 38.462 0.00 0.00 0.00 5.18
867 874 7.040686 TGAGTGTATGTGTGTATATATCAGCGT 60.041 37.037 0.00 0.00 0.00 5.07
868 875 7.306213 AGTGTATGTGTGTATATATCAGCGTC 58.694 38.462 0.00 0.00 0.00 5.19
869 876 7.175119 AGTGTATGTGTGTATATATCAGCGTCT 59.825 37.037 0.00 0.00 0.00 4.18
870 877 7.271438 GTGTATGTGTGTATATATCAGCGTCTG 59.729 40.741 0.00 1.02 0.00 3.51
871 878 5.121221 TGTGTGTATATATCAGCGTCTGG 57.879 43.478 6.95 0.00 31.51 3.86
872 879 4.022329 TGTGTGTATATATCAGCGTCTGGG 60.022 45.833 6.95 0.00 31.51 4.45
873 880 4.022242 GTGTGTATATATCAGCGTCTGGGT 60.022 45.833 6.95 0.75 31.51 4.51
874 881 4.217767 TGTGTATATATCAGCGTCTGGGTC 59.782 45.833 6.95 0.00 31.51 4.46
875 882 4.459685 GTGTATATATCAGCGTCTGGGTCT 59.540 45.833 6.95 0.00 31.51 3.85
876 883 5.646793 GTGTATATATCAGCGTCTGGGTCTA 59.353 44.000 6.95 0.00 31.51 2.59
877 884 6.319152 GTGTATATATCAGCGTCTGGGTCTAT 59.681 42.308 6.95 3.66 31.51 1.98
878 885 7.498239 GTGTATATATCAGCGTCTGGGTCTATA 59.502 40.741 6.95 5.18 31.51 1.31
879 886 6.945938 ATATATCAGCGTCTGGGTCTATAC 57.054 41.667 6.95 0.00 31.51 1.47
880 887 1.688772 TCAGCGTCTGGGTCTATACC 58.311 55.000 6.95 0.00 45.97 2.73
929 936 2.127906 CACGTGTTTGCGCCGTAC 60.128 61.111 7.58 0.08 32.81 3.67
946 954 2.548067 CGTACAGGAACCAGTTGAGCTT 60.548 50.000 0.00 0.00 0.00 3.74
949 957 1.876156 CAGGAACCAGTTGAGCTTGAC 59.124 52.381 0.00 0.00 0.00 3.18
955 963 1.475751 CCAGTTGAGCTTGACCACACT 60.476 52.381 0.00 0.00 0.00 3.55
1592 1611 3.550656 GTTCGACAGAACGCCCAG 58.449 61.111 0.00 0.00 45.96 4.45
1723 1742 3.933048 GAGGTGACGGTCCTCGGGA 62.933 68.421 5.55 0.00 41.36 5.14
1782 1801 3.047877 CGGTGGGTTGAGCGGTTC 61.048 66.667 0.00 0.00 33.22 3.62
1818 1837 2.099652 TTGGGAGGTCTGTGACGCTG 62.100 60.000 0.00 0.00 32.65 5.18
1917 1936 1.540146 CGGACTGTTGTGTCATGGACA 60.540 52.381 0.00 0.00 40.50 4.02
1956 1975 2.983879 AATGGAGGGCCGTGGGAAG 61.984 63.158 0.65 0.00 36.79 3.46
1967 1986 2.935481 TGGGAAGGAGGCTGTGGG 60.935 66.667 0.00 0.00 0.00 4.61
1977 1996 2.358737 GCTGTGGGGGTGTTCGAG 60.359 66.667 0.00 0.00 0.00 4.04
1992 2011 2.386661 TCGAGGAAATGAAGGCTGTC 57.613 50.000 0.00 0.00 0.00 3.51
1995 2014 0.693049 AGGAAATGAAGGCTGTCGGT 59.307 50.000 0.00 0.00 0.00 4.69
2016 2035 3.333189 CCGCCTGATGATGTCGCG 61.333 66.667 0.00 0.00 0.00 5.87
2172 2191 3.142838 GCCGGCATGGTTGAGCAT 61.143 61.111 24.80 0.00 41.21 3.79
2208 2227 2.408835 GCGATGCCCATGAAACCG 59.591 61.111 0.00 0.00 0.00 4.44
2298 2317 3.539604 CATCAGCAGGGACCTTCTTAAG 58.460 50.000 0.00 0.00 0.00 1.85
2409 2428 6.431234 GGAGAGAGATGAGTAAGAGAGGAATC 59.569 46.154 0.00 0.00 0.00 2.52
2421 2440 0.804989 GAGGAATCACAAAGGTGCCG 59.195 55.000 0.00 0.00 44.87 5.69
2769 2799 1.600663 CGGGAGATCATAGTGCGTGAC 60.601 57.143 0.00 0.00 0.00 3.67
2883 2917 2.079925 GGTGCAGTGAAGAGTGGATTC 58.920 52.381 0.00 0.00 0.00 2.52
2898 2932 3.066621 GTGGATTCAACTTCAACAGCACA 59.933 43.478 0.00 0.00 0.00 4.57
2908 2942 0.039798 CAACAGCACATGCAGGTGAC 60.040 55.000 33.75 23.41 46.47 3.67
2931 2965 5.937540 ACCGTGAACTCATGATGTATTTTCA 59.062 36.000 0.00 0.00 34.90 2.69
2937 2971 9.246670 TGAACTCATGATGTATTTTCAAGGAAT 57.753 29.630 0.00 0.00 0.00 3.01
2943 2977 8.814235 CATGATGTATTTTCAAGGAATTTCTGC 58.186 33.333 0.00 0.00 0.00 4.26
2944 2978 7.894708 TGATGTATTTTCAAGGAATTTCTGCA 58.105 30.769 0.00 0.00 0.00 4.41
2945 2979 8.366401 TGATGTATTTTCAAGGAATTTCTGCAA 58.634 29.630 0.00 0.00 0.00 4.08
2978 3012 6.098124 TCCTTGAGGTTTGCCAATTTATATGG 59.902 38.462 0.00 0.00 37.46 2.74
3013 3057 7.327032 GCCAAAAACTGATGTTTACTGAAGATC 59.673 37.037 0.00 0.00 44.70 2.75
3016 3060 7.440523 AAACTGATGTTTACTGAAGATCACC 57.559 36.000 0.00 0.00 41.54 4.02
3080 3125 5.003692 TGAGTACTGAATGTCTCATCAGC 57.996 43.478 0.00 0.00 45.50 4.26
3090 3423 6.600427 TGAATGTCTCATCAGCACACATTTAT 59.400 34.615 0.00 0.00 37.71 1.40
3164 3497 1.751927 CCCCAGCTTGCATCCTGTC 60.752 63.158 11.70 0.00 0.00 3.51
3165 3498 1.302285 CCCAGCTTGCATCCTGTCT 59.698 57.895 11.70 0.00 0.00 3.41
3426 3772 4.285020 TCTATGAACTGTCTGCCATCTCT 58.715 43.478 0.00 0.00 0.00 3.10
3430 3776 4.026052 TGAACTGTCTGCCATCTCTATGA 58.974 43.478 0.00 0.00 34.84 2.15
3445 3791 4.022503 TCTCTATGATGTTGCTGATCTCGG 60.023 45.833 0.00 0.00 0.00 4.63
3590 3936 8.648693 ACTACATGGGTAATATTTCTCTGTACC 58.351 37.037 0.00 0.00 34.63 3.34
3753 4100 2.874701 CAGCCAATCTTATGAACCTCCG 59.125 50.000 0.00 0.00 0.00 4.63
3760 4107 4.931661 TCTTATGAACCTCCGTGTATCC 57.068 45.455 0.00 0.00 0.00 2.59
3783 4133 4.159120 GCTGTTAGATCAAACCTTTTCGC 58.841 43.478 0.00 0.00 0.00 4.70
3808 4159 4.700268 TGCGTGATGTGCATCTTATTTT 57.300 36.364 12.64 0.00 37.44 1.82
3811 4162 4.274069 CGTGATGTGCATCTTATTTTCCG 58.726 43.478 12.64 0.88 38.60 4.30
3812 4163 4.601019 GTGATGTGCATCTTATTTTCCGG 58.399 43.478 12.64 0.00 38.60 5.14
3813 4164 4.335315 GTGATGTGCATCTTATTTTCCGGA 59.665 41.667 0.00 0.00 38.60 5.14
3814 4165 4.576053 TGATGTGCATCTTATTTTCCGGAG 59.424 41.667 3.34 0.00 38.60 4.63
3815 4166 2.682856 TGTGCATCTTATTTTCCGGAGC 59.317 45.455 3.34 1.32 0.00 4.70
3816 4167 2.033424 GTGCATCTTATTTTCCGGAGCC 59.967 50.000 3.34 0.00 0.00 4.70
3817 4168 1.264288 GCATCTTATTTTCCGGAGCCG 59.736 52.381 3.34 1.06 39.44 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.112113 TCCAGCTGACCGATACTTCC 58.888 55.000 17.39 0.00 0.00 3.46
124 125 0.698238 TCCATATGCCCAGCCCATAC 59.302 55.000 0.00 0.00 0.00 2.39
181 182 0.665835 AGCGATCGAGACCTAAGCTG 59.334 55.000 21.57 0.00 31.76 4.24
203 204 4.032104 CGAACTAAGTTTGGTGTATACGCC 59.968 45.833 25.68 25.68 46.40 5.68
265 266 9.030301 CGAAAAATCTCACAAGGTTTTACAATT 57.970 29.630 0.00 0.00 43.47 2.32
276 277 2.813754 TCCAGCCGAAAAATCTCACAAG 59.186 45.455 0.00 0.00 0.00 3.16
279 280 2.675348 CTCTCCAGCCGAAAAATCTCAC 59.325 50.000 0.00 0.00 0.00 3.51
296 297 0.173708 ACGCCGAACTGGATTCTCTC 59.826 55.000 0.00 0.00 42.00 3.20
297 298 0.108615 CACGCCGAACTGGATTCTCT 60.109 55.000 0.00 0.00 42.00 3.10
298 299 0.389948 ACACGCCGAACTGGATTCTC 60.390 55.000 0.00 0.00 42.00 2.87
312 315 1.141645 TCAAACACCGACATACACGC 58.858 50.000 0.00 0.00 0.00 5.34
313 316 2.990514 TGATCAAACACCGACATACACG 59.009 45.455 0.00 0.00 0.00 4.49
322 325 1.860950 CCTCGCTATGATCAAACACCG 59.139 52.381 0.00 0.00 0.00 4.94
339 342 1.585521 CGACATACACGCCGACCTC 60.586 63.158 0.00 0.00 0.00 3.85
340 343 2.488355 CGACATACACGCCGACCT 59.512 61.111 0.00 0.00 0.00 3.85
341 344 2.581409 CCGACATACACGCCGACC 60.581 66.667 0.00 0.00 0.00 4.79
342 345 2.156446 CACCGACATACACGCCGAC 61.156 63.158 0.00 0.00 0.00 4.79
343 346 2.144833 AACACCGACATACACGCCGA 62.145 55.000 0.00 0.00 0.00 5.54
344 347 1.286354 AAACACCGACATACACGCCG 61.286 55.000 0.00 0.00 0.00 6.46
345 348 0.165079 CAAACACCGACATACACGCC 59.835 55.000 0.00 0.00 0.00 5.68
346 349 1.141645 TCAAACACCGACATACACGC 58.858 50.000 0.00 0.00 0.00 5.34
347 350 2.990514 TGATCAAACACCGACATACACG 59.009 45.455 0.00 0.00 0.00 4.49
348 351 5.276868 GCTATGATCAAACACCGACATACAC 60.277 44.000 0.00 0.00 0.00 2.90
349 352 4.808895 GCTATGATCAAACACCGACATACA 59.191 41.667 0.00 0.00 0.00 2.29
350 353 4.085055 CGCTATGATCAAACACCGACATAC 60.085 45.833 0.00 0.00 0.00 2.39
351 354 4.048504 CGCTATGATCAAACACCGACATA 58.951 43.478 0.00 0.00 0.00 2.29
352 355 2.866156 CGCTATGATCAAACACCGACAT 59.134 45.455 0.00 0.00 0.00 3.06
353 356 2.094442 TCGCTATGATCAAACACCGACA 60.094 45.455 0.00 0.00 0.00 4.35
354 357 2.535984 CTCGCTATGATCAAACACCGAC 59.464 50.000 0.00 0.00 0.00 4.79
355 358 2.481276 CCTCGCTATGATCAAACACCGA 60.481 50.000 0.00 3.51 0.00 4.69
356 359 1.860950 CCTCGCTATGATCAAACACCG 59.139 52.381 0.00 0.00 0.00 4.94
357 360 2.866762 GACCTCGCTATGATCAAACACC 59.133 50.000 0.00 0.00 0.00 4.16
358 361 3.786635 AGACCTCGCTATGATCAAACAC 58.213 45.455 0.00 0.00 0.00 3.32
359 362 4.081697 TCAAGACCTCGCTATGATCAAACA 60.082 41.667 0.00 0.00 0.00 2.83
360 363 4.268884 GTCAAGACCTCGCTATGATCAAAC 59.731 45.833 0.00 0.00 0.00 2.93
361 364 4.081697 TGTCAAGACCTCGCTATGATCAAA 60.082 41.667 0.00 0.00 0.00 2.69
362 365 3.447229 TGTCAAGACCTCGCTATGATCAA 59.553 43.478 0.00 0.00 0.00 2.57
363 366 3.023832 TGTCAAGACCTCGCTATGATCA 58.976 45.455 0.00 0.00 0.00 2.92
364 367 3.316588 TCTGTCAAGACCTCGCTATGATC 59.683 47.826 0.00 0.00 0.00 2.92
365 368 3.291584 TCTGTCAAGACCTCGCTATGAT 58.708 45.455 0.00 0.00 0.00 2.45
366 369 2.723273 TCTGTCAAGACCTCGCTATGA 58.277 47.619 0.00 0.00 0.00 2.15
367 370 3.181482 ACATCTGTCAAGACCTCGCTATG 60.181 47.826 0.00 0.00 34.48 2.23
368 371 3.027412 ACATCTGTCAAGACCTCGCTAT 58.973 45.455 0.00 0.00 34.48 2.97
369 372 2.447443 ACATCTGTCAAGACCTCGCTA 58.553 47.619 0.00 0.00 34.48 4.26
370 373 1.261480 ACATCTGTCAAGACCTCGCT 58.739 50.000 0.00 0.00 34.48 4.93
371 374 2.480416 CCTACATCTGTCAAGACCTCGC 60.480 54.545 0.00 0.00 34.48 5.03
372 375 2.480416 GCCTACATCTGTCAAGACCTCG 60.480 54.545 0.00 0.00 34.48 4.63
373 376 2.763448 AGCCTACATCTGTCAAGACCTC 59.237 50.000 0.00 0.00 34.48 3.85
376 379 3.056536 TGTGAGCCTACATCTGTCAAGAC 60.057 47.826 0.00 0.00 34.48 3.01
385 388 1.205655 TGTGAGCTGTGAGCCTACATC 59.794 52.381 0.00 0.00 43.77 3.06
388 391 1.066573 ACATGTGAGCTGTGAGCCTAC 60.067 52.381 0.00 0.00 43.77 3.18
389 392 1.269958 ACATGTGAGCTGTGAGCCTA 58.730 50.000 0.00 0.00 43.77 3.93
390 393 1.269958 TACATGTGAGCTGTGAGCCT 58.730 50.000 9.11 0.00 43.77 4.58
391 394 2.322355 ATACATGTGAGCTGTGAGCC 57.678 50.000 9.11 0.00 43.77 4.70
415 418 4.964897 TCAGAGAATTTATCAGGAGGAGCA 59.035 41.667 0.00 0.00 0.00 4.26
481 488 6.531594 ACAAGCTGCTTTTCTTCAGTTTTTAC 59.468 34.615 13.10 0.00 32.65 2.01
483 490 5.482006 ACAAGCTGCTTTTCTTCAGTTTTT 58.518 33.333 13.10 0.00 32.65 1.94
484 491 5.077134 ACAAGCTGCTTTTCTTCAGTTTT 57.923 34.783 13.10 0.00 32.65 2.43
485 492 4.400567 AGACAAGCTGCTTTTCTTCAGTTT 59.599 37.500 21.87 4.91 34.76 2.66
600 607 2.880890 AGCAGCTATGGAAATTTAGCCG 59.119 45.455 6.99 0.00 36.29 5.52
614 621 1.943046 GCAAGCAGAACTGAGCAGCTA 60.943 52.381 5.97 0.00 34.66 3.32
617 624 1.130749 GATGCAAGCAGAACTGAGCAG 59.869 52.381 16.75 0.00 37.63 4.24
621 628 1.150827 CACGATGCAAGCAGAACTGA 58.849 50.000 5.97 0.00 0.00 3.41
660 667 8.730970 AATTCAAAAATAATGCAAACATGTGC 57.269 26.923 0.00 0.00 45.15 4.57
680 687 7.479352 TGCCAGAAATCCTGAAATAAATTCA 57.521 32.000 0.00 0.00 45.78 2.57
681 688 8.823818 CATTGCCAGAAATCCTGAAATAAATTC 58.176 33.333 0.00 0.00 45.78 2.17
682 689 7.281549 GCATTGCCAGAAATCCTGAAATAAATT 59.718 33.333 0.00 0.00 45.78 1.82
683 690 6.764560 GCATTGCCAGAAATCCTGAAATAAAT 59.235 34.615 0.00 0.00 45.78 1.40
684 691 6.108015 GCATTGCCAGAAATCCTGAAATAAA 58.892 36.000 0.00 0.00 45.78 1.40
685 692 5.663456 GCATTGCCAGAAATCCTGAAATAA 58.337 37.500 0.00 0.00 45.78 1.40
686 693 4.202040 CGCATTGCCAGAAATCCTGAAATA 60.202 41.667 2.41 0.00 45.78 1.40
687 694 3.429822 CGCATTGCCAGAAATCCTGAAAT 60.430 43.478 2.41 0.00 45.78 2.17
688 695 2.094597 CGCATTGCCAGAAATCCTGAAA 60.095 45.455 2.41 0.00 45.78 2.69
689 696 1.473677 CGCATTGCCAGAAATCCTGAA 59.526 47.619 2.41 0.00 45.78 3.02
690 697 1.097232 CGCATTGCCAGAAATCCTGA 58.903 50.000 2.41 0.00 45.78 3.86
691 698 0.526954 GCGCATTGCCAGAAATCCTG 60.527 55.000 0.30 0.00 42.55 3.86
692 699 1.811860 GCGCATTGCCAGAAATCCT 59.188 52.632 0.30 0.00 37.76 3.24
693 700 1.587088 CGCGCATTGCCAGAAATCC 60.587 57.895 8.75 0.00 42.08 3.01
694 701 0.456653 AACGCGCATTGCCAGAAATC 60.457 50.000 5.73 0.00 42.08 2.17
695 702 0.456653 GAACGCGCATTGCCAGAAAT 60.457 50.000 5.73 0.00 42.08 2.17
696 703 1.081509 GAACGCGCATTGCCAGAAA 60.082 52.632 5.73 0.00 42.08 2.52
697 704 1.585267 ATGAACGCGCATTGCCAGAA 61.585 50.000 5.73 0.00 42.08 3.02
698 705 1.585267 AATGAACGCGCATTGCCAGA 61.585 50.000 5.73 0.00 42.08 3.86
699 706 0.098552 TAATGAACGCGCATTGCCAG 59.901 50.000 18.46 0.00 42.08 4.85
700 707 0.737804 ATAATGAACGCGCATTGCCA 59.262 45.000 18.46 0.00 42.08 4.92
701 708 1.838913 AATAATGAACGCGCATTGCC 58.161 45.000 18.46 0.00 42.08 4.52
702 709 3.905339 AAAATAATGAACGCGCATTGC 57.095 38.095 18.46 0.00 38.80 3.56
703 710 4.325741 TCCAAAAATAATGAACGCGCATTG 59.674 37.500 18.46 5.65 38.80 2.82
704 711 4.489810 TCCAAAAATAATGAACGCGCATT 58.510 34.783 5.73 11.73 41.15 3.56
705 712 4.103365 TCCAAAAATAATGAACGCGCAT 57.897 36.364 5.73 0.00 0.00 4.73
706 713 3.560902 TCCAAAAATAATGAACGCGCA 57.439 38.095 5.73 0.00 0.00 6.09
707 714 5.448926 AAATCCAAAAATAATGAACGCGC 57.551 34.783 5.73 0.00 0.00 6.86
708 715 9.618410 GAAATAAATCCAAAAATAATGAACGCG 57.382 29.630 3.53 3.53 0.00 6.01
721 728 9.291664 CGCCGTAAATTTAGAAATAAATCCAAA 57.708 29.630 0.00 0.00 0.00 3.28
722 729 8.675504 TCGCCGTAAATTTAGAAATAAATCCAA 58.324 29.630 0.00 0.00 0.00 3.53
723 730 8.211116 TCGCCGTAAATTTAGAAATAAATCCA 57.789 30.769 0.00 0.00 0.00 3.41
724 731 9.113876 CATCGCCGTAAATTTAGAAATAAATCC 57.886 33.333 0.00 0.00 0.00 3.01
725 732 8.627428 GCATCGCCGTAAATTTAGAAATAAATC 58.373 33.333 0.00 0.00 0.00 2.17
726 733 7.322699 CGCATCGCCGTAAATTTAGAAATAAAT 59.677 33.333 0.00 0.00 0.00 1.40
727 734 6.629649 CGCATCGCCGTAAATTTAGAAATAAA 59.370 34.615 0.00 0.00 0.00 1.40
728 735 6.130723 CGCATCGCCGTAAATTTAGAAATAA 58.869 36.000 0.00 0.00 0.00 1.40
729 736 5.672051 CGCATCGCCGTAAATTTAGAAATA 58.328 37.500 0.00 0.00 0.00 1.40
730 737 4.523813 CGCATCGCCGTAAATTTAGAAAT 58.476 39.130 0.00 0.00 0.00 2.17
731 738 3.930618 CGCATCGCCGTAAATTTAGAAA 58.069 40.909 0.00 0.00 0.00 2.52
732 739 3.579147 CGCATCGCCGTAAATTTAGAA 57.421 42.857 0.00 0.00 0.00 2.10
746 753 1.284657 ACTTCTCTGAATGCGCATCG 58.715 50.000 25.53 15.10 0.00 3.84
747 754 3.754188 AAACTTCTCTGAATGCGCATC 57.246 42.857 25.53 17.12 0.00 3.91
748 755 4.217118 AGAAAAACTTCTCTGAATGCGCAT 59.783 37.500 19.28 19.28 0.00 4.73
749 756 3.565482 AGAAAAACTTCTCTGAATGCGCA 59.435 39.130 14.96 14.96 0.00 6.09
750 757 4.152607 AGAAAAACTTCTCTGAATGCGC 57.847 40.909 0.00 0.00 0.00 6.09
751 758 4.150627 TCGAGAAAAACTTCTCTGAATGCG 59.849 41.667 11.88 0.00 43.94 4.73
752 759 5.178438 AGTCGAGAAAAACTTCTCTGAATGC 59.822 40.000 11.88 2.51 43.94 3.56
753 760 6.777526 AGTCGAGAAAAACTTCTCTGAATG 57.222 37.500 11.88 0.00 43.94 2.67
754 761 8.307483 TCATAGTCGAGAAAAACTTCTCTGAAT 58.693 33.333 11.88 11.59 43.94 2.57
755 762 7.658261 TCATAGTCGAGAAAAACTTCTCTGAA 58.342 34.615 11.88 0.83 43.94 3.02
756 763 7.215719 TCATAGTCGAGAAAAACTTCTCTGA 57.784 36.000 11.88 8.54 43.94 3.27
757 764 6.529829 CCTCATAGTCGAGAAAAACTTCTCTG 59.470 42.308 11.88 6.78 43.94 3.35
758 765 6.626302 CCTCATAGTCGAGAAAAACTTCTCT 58.374 40.000 11.88 0.00 43.94 3.10
759 766 5.289917 GCCTCATAGTCGAGAAAAACTTCTC 59.710 44.000 5.04 5.04 42.98 2.87
760 767 5.172205 GCCTCATAGTCGAGAAAAACTTCT 58.828 41.667 0.00 0.00 34.79 2.85
761 768 4.929808 TGCCTCATAGTCGAGAAAAACTTC 59.070 41.667 0.00 0.00 34.79 3.01
762 769 4.691216 GTGCCTCATAGTCGAGAAAAACTT 59.309 41.667 0.00 0.00 34.79 2.66
763 770 4.246458 GTGCCTCATAGTCGAGAAAAACT 58.754 43.478 0.00 0.00 34.79 2.66
764 771 3.371285 GGTGCCTCATAGTCGAGAAAAAC 59.629 47.826 0.00 0.00 34.79 2.43
765 772 3.260884 AGGTGCCTCATAGTCGAGAAAAA 59.739 43.478 0.00 0.00 34.79 1.94
766 773 2.832129 AGGTGCCTCATAGTCGAGAAAA 59.168 45.455 0.00 0.00 34.79 2.29
767 774 2.166459 CAGGTGCCTCATAGTCGAGAAA 59.834 50.000 0.00 0.00 34.79 2.52
768 775 1.751351 CAGGTGCCTCATAGTCGAGAA 59.249 52.381 0.00 0.00 34.79 2.87
769 776 1.341089 ACAGGTGCCTCATAGTCGAGA 60.341 52.381 0.00 0.00 34.79 4.04
770 777 1.107114 ACAGGTGCCTCATAGTCGAG 58.893 55.000 0.00 0.00 0.00 4.04
771 778 0.817654 CACAGGTGCCTCATAGTCGA 59.182 55.000 0.00 0.00 0.00 4.20
772 779 0.817654 TCACAGGTGCCTCATAGTCG 59.182 55.000 0.00 0.00 0.00 4.18
773 780 2.432146 TCATCACAGGTGCCTCATAGTC 59.568 50.000 0.00 0.00 0.00 2.59
774 781 2.169352 GTCATCACAGGTGCCTCATAGT 59.831 50.000 0.00 0.00 0.00 2.12
775 782 2.433604 AGTCATCACAGGTGCCTCATAG 59.566 50.000 0.00 0.00 0.00 2.23
776 783 2.470990 AGTCATCACAGGTGCCTCATA 58.529 47.619 0.00 0.00 0.00 2.15
777 784 1.283347 AGTCATCACAGGTGCCTCAT 58.717 50.000 0.00 0.00 0.00 2.90
778 785 1.002430 GAAGTCATCACAGGTGCCTCA 59.998 52.381 0.00 0.00 0.00 3.86
779 786 1.731720 GAAGTCATCACAGGTGCCTC 58.268 55.000 0.00 0.00 0.00 4.70
780 787 0.036952 CGAAGTCATCACAGGTGCCT 60.037 55.000 0.00 0.00 0.00 4.75
781 788 0.320771 ACGAAGTCATCACAGGTGCC 60.321 55.000 0.00 0.00 29.74 5.01
782 789 0.792640 CACGAAGTCATCACAGGTGC 59.207 55.000 0.00 0.00 41.61 5.01
783 790 2.029918 TCTCACGAAGTCATCACAGGTG 60.030 50.000 0.00 0.00 41.61 4.00
784 791 2.239400 TCTCACGAAGTCATCACAGGT 58.761 47.619 0.00 0.00 41.61 4.00
785 792 3.185330 CATCTCACGAAGTCATCACAGG 58.815 50.000 0.00 0.00 41.61 4.00
786 793 2.602211 GCATCTCACGAAGTCATCACAG 59.398 50.000 0.00 0.00 41.61 3.66
787 794 2.232208 AGCATCTCACGAAGTCATCACA 59.768 45.455 0.00 0.00 41.61 3.58
788 795 2.857152 GAGCATCTCACGAAGTCATCAC 59.143 50.000 0.00 0.00 41.61 3.06
789 796 2.493278 TGAGCATCTCACGAAGTCATCA 59.507 45.455 0.00 0.00 35.39 3.07
790 797 3.156511 TGAGCATCTCACGAAGTCATC 57.843 47.619 0.00 0.00 35.39 2.92
791 798 3.815856 ATGAGCATCTCACGAAGTCAT 57.184 42.857 0.00 0.00 43.63 3.06
792 799 3.067320 CCTATGAGCATCTCACGAAGTCA 59.933 47.826 0.00 0.00 43.63 3.41
793 800 3.551863 CCCTATGAGCATCTCACGAAGTC 60.552 52.174 0.00 0.00 43.63 3.01
794 801 2.363680 CCCTATGAGCATCTCACGAAGT 59.636 50.000 0.00 0.00 43.63 3.01
795 802 2.363680 ACCCTATGAGCATCTCACGAAG 59.636 50.000 0.00 0.00 43.63 3.79
796 803 2.388735 ACCCTATGAGCATCTCACGAA 58.611 47.619 0.00 0.00 43.63 3.85
797 804 2.073252 ACCCTATGAGCATCTCACGA 57.927 50.000 0.00 0.00 43.63 4.35
798 805 2.230025 CCTACCCTATGAGCATCTCACG 59.770 54.545 0.00 0.00 43.63 4.35
799 806 2.564947 CCCTACCCTATGAGCATCTCAC 59.435 54.545 0.00 0.00 43.63 3.51
800 807 2.180086 ACCCTACCCTATGAGCATCTCA 59.820 50.000 0.00 0.00 44.99 3.27
801 808 2.896039 ACCCTACCCTATGAGCATCTC 58.104 52.381 0.00 0.00 34.92 2.75
802 809 4.701333 ATACCCTACCCTATGAGCATCT 57.299 45.455 0.00 0.00 34.92 2.90
803 810 4.142138 CGAATACCCTACCCTATGAGCATC 60.142 50.000 0.00 0.00 0.00 3.91
804 811 3.769844 CGAATACCCTACCCTATGAGCAT 59.230 47.826 0.00 0.00 0.00 3.79
805 812 3.162666 CGAATACCCTACCCTATGAGCA 58.837 50.000 0.00 0.00 0.00 4.26
806 813 3.056749 CACGAATACCCTACCCTATGAGC 60.057 52.174 0.00 0.00 0.00 4.26
807 814 4.022242 CACACGAATACCCTACCCTATGAG 60.022 50.000 0.00 0.00 0.00 2.90
808 815 3.893200 CACACGAATACCCTACCCTATGA 59.107 47.826 0.00 0.00 0.00 2.15
809 816 3.640029 ACACACGAATACCCTACCCTATG 59.360 47.826 0.00 0.00 0.00 2.23
810 817 3.919834 ACACACGAATACCCTACCCTAT 58.080 45.455 0.00 0.00 0.00 2.57
811 818 3.386932 ACACACGAATACCCTACCCTA 57.613 47.619 0.00 0.00 0.00 3.53
812 819 2.242882 ACACACGAATACCCTACCCT 57.757 50.000 0.00 0.00 0.00 4.34
813 820 2.736400 CGAACACACGAATACCCTACCC 60.736 54.545 0.00 0.00 35.09 3.69
814 821 2.094545 ACGAACACACGAATACCCTACC 60.095 50.000 0.00 0.00 37.03 3.18
815 822 3.221964 ACGAACACACGAATACCCTAC 57.778 47.619 0.00 0.00 37.03 3.18
816 823 4.639755 TCATACGAACACACGAATACCCTA 59.360 41.667 0.00 0.00 37.03 3.53
817 824 3.444742 TCATACGAACACACGAATACCCT 59.555 43.478 0.00 0.00 37.03 4.34
818 825 3.772932 TCATACGAACACACGAATACCC 58.227 45.455 0.00 0.00 37.03 3.69
819 826 5.517411 TCATTCATACGAACACACGAATACC 59.483 40.000 0.00 0.00 32.81 2.73
820 827 6.252869 ACTCATTCATACGAACACACGAATAC 59.747 38.462 0.00 0.00 32.81 1.89
821 828 6.252655 CACTCATTCATACGAACACACGAATA 59.747 38.462 0.00 0.00 32.81 1.75
822 829 5.062183 CACTCATTCATACGAACACACGAAT 59.938 40.000 0.00 0.00 32.81 3.34
823 830 4.384547 CACTCATTCATACGAACACACGAA 59.615 41.667 0.00 0.00 32.81 3.85
824 831 3.917985 CACTCATTCATACGAACACACGA 59.082 43.478 0.00 0.00 32.81 4.35
825 832 3.673338 ACACTCATTCATACGAACACACG 59.327 43.478 0.00 0.00 32.81 4.49
826 833 6.310467 ACATACACTCATTCATACGAACACAC 59.690 38.462 0.00 0.00 32.81 3.82
827 834 6.310224 CACATACACTCATTCATACGAACACA 59.690 38.462 0.00 0.00 32.81 3.72
828 835 6.310467 ACACATACACTCATTCATACGAACAC 59.690 38.462 0.00 0.00 32.81 3.32
829 836 6.310224 CACACATACACTCATTCATACGAACA 59.690 38.462 0.00 0.00 32.81 3.18
830 837 6.310467 ACACACATACACTCATTCATACGAAC 59.690 38.462 0.00 0.00 32.81 3.95
831 838 6.394809 ACACACATACACTCATTCATACGAA 58.605 36.000 0.00 0.00 35.05 3.85
832 839 5.961272 ACACACATACACTCATTCATACGA 58.039 37.500 0.00 0.00 0.00 3.43
833 840 7.930513 ATACACACATACACTCATTCATACG 57.069 36.000 0.00 0.00 0.00 3.06
839 846 9.645059 GCTGATATATACACACATACACTCATT 57.355 33.333 0.00 0.00 0.00 2.57
840 847 7.970614 CGCTGATATATACACACATACACTCAT 59.029 37.037 0.00 0.00 0.00 2.90
841 848 7.040686 ACGCTGATATATACACACATACACTCA 60.041 37.037 0.00 0.00 0.00 3.41
842 849 7.306213 ACGCTGATATATACACACATACACTC 58.694 38.462 0.00 0.00 0.00 3.51
843 850 7.175119 AGACGCTGATATATACACACATACACT 59.825 37.037 0.00 0.00 0.00 3.55
844 851 7.271438 CAGACGCTGATATATACACACATACAC 59.729 40.741 1.18 0.00 32.44 2.90
845 852 7.305474 CAGACGCTGATATATACACACATACA 58.695 38.462 1.18 0.00 32.44 2.29
846 853 6.747739 CCAGACGCTGATATATACACACATAC 59.252 42.308 8.20 0.00 32.44 2.39
847 854 6.127730 CCCAGACGCTGATATATACACACATA 60.128 42.308 8.20 0.00 32.44 2.29
848 855 5.336770 CCCAGACGCTGATATATACACACAT 60.337 44.000 8.20 0.00 32.44 3.21
849 856 4.022329 CCCAGACGCTGATATATACACACA 60.022 45.833 8.20 0.00 32.44 3.72
850 857 4.022242 ACCCAGACGCTGATATATACACAC 60.022 45.833 8.20 0.00 32.44 3.82
851 858 4.149598 ACCCAGACGCTGATATATACACA 58.850 43.478 8.20 0.00 32.44 3.72
852 859 4.459685 AGACCCAGACGCTGATATATACAC 59.540 45.833 8.20 0.00 32.44 2.90
853 860 4.663334 AGACCCAGACGCTGATATATACA 58.337 43.478 8.20 0.00 32.44 2.29
854 861 6.945938 ATAGACCCAGACGCTGATATATAC 57.054 41.667 8.20 0.00 32.44 1.47
855 862 6.996879 GGTATAGACCCAGACGCTGATATATA 59.003 42.308 8.20 5.42 40.23 0.86
856 863 5.828859 GGTATAGACCCAGACGCTGATATAT 59.171 44.000 8.20 6.15 40.23 0.86
857 864 5.191426 GGTATAGACCCAGACGCTGATATA 58.809 45.833 8.20 3.94 40.23 0.86
858 865 4.017808 GGTATAGACCCAGACGCTGATAT 58.982 47.826 8.20 4.65 40.23 1.63
859 866 3.418995 GGTATAGACCCAGACGCTGATA 58.581 50.000 8.20 0.00 40.23 2.15
860 867 2.240279 GGTATAGACCCAGACGCTGAT 58.760 52.381 8.20 0.00 40.23 2.90
861 868 1.688772 GGTATAGACCCAGACGCTGA 58.311 55.000 8.20 0.00 40.23 4.26
862 869 0.311165 CGGTATAGACCCAGACGCTG 59.689 60.000 0.00 0.52 43.64 5.18
863 870 0.106819 ACGGTATAGACCCAGACGCT 60.107 55.000 0.00 0.00 43.64 5.07
864 871 0.030369 CACGGTATAGACCCAGACGC 59.970 60.000 0.00 0.00 43.64 5.19
865 872 1.386533 ACACGGTATAGACCCAGACG 58.613 55.000 0.00 0.00 43.64 4.18
866 873 3.881937 AAACACGGTATAGACCCAGAC 57.118 47.619 0.00 0.00 43.64 3.51
867 874 5.999205 TTTAAACACGGTATAGACCCAGA 57.001 39.130 0.00 0.00 43.64 3.86
899 906 3.481112 AACACGTGCGTTCTTCTTTTT 57.519 38.095 17.22 0.00 0.00 1.94
900 907 3.168193 CAAACACGTGCGTTCTTCTTTT 58.832 40.909 17.22 2.12 0.00 2.27
901 908 2.780993 CAAACACGTGCGTTCTTCTTT 58.219 42.857 17.22 2.90 0.00 2.52
902 909 1.531058 GCAAACACGTGCGTTCTTCTT 60.531 47.619 17.22 0.00 34.21 2.52
903 910 0.027586 GCAAACACGTGCGTTCTTCT 59.972 50.000 17.22 0.00 34.21 2.85
904 911 2.480593 GCAAACACGTGCGTTCTTC 58.519 52.632 17.22 0.00 34.21 2.87
905 912 4.682306 GCAAACACGTGCGTTCTT 57.318 50.000 17.22 0.00 34.21 2.52
915 922 1.500512 TTCCTGTACGGCGCAAACAC 61.501 55.000 10.83 1.28 0.00 3.32
929 936 1.876156 GTCAAGCTCAACTGGTTCCTG 59.124 52.381 0.00 0.00 0.00 3.86
946 954 1.367471 CCTTCGCTGAGTGTGGTCA 59.633 57.895 0.00 0.00 0.00 4.02
949 957 0.249868 TTGACCTTCGCTGAGTGTGG 60.250 55.000 6.34 6.34 0.00 4.17
955 963 1.503818 GCGGTTTTGACCTTCGCTGA 61.504 55.000 0.00 0.00 42.62 4.26
987 1006 2.574212 GGCATTTGCTCGAACGCG 60.574 61.111 3.53 3.53 41.70 6.01
1122 1141 2.674220 GGGCTGGAGGAGGGAACTG 61.674 68.421 0.00 0.00 44.43 3.16
1124 1143 3.412408 GGGGCTGGAGGAGGGAAC 61.412 72.222 0.00 0.00 0.00 3.62
1125 1144 3.626596 AGGGGCTGGAGGAGGGAA 61.627 66.667 0.00 0.00 0.00 3.97
1288 1307 2.100631 CGCGGATGAGGGTGTTGAC 61.101 63.158 0.00 0.00 0.00 3.18
1782 1801 3.031417 AATTCCCTCCCTCGCCACG 62.031 63.158 0.00 0.00 0.00 4.94
1917 1936 1.402968 GCAAGTGCATCAATCACCGAT 59.597 47.619 0.00 0.00 41.59 4.18
1956 1975 3.569200 GAACACCCCCACAGCCTCC 62.569 68.421 0.00 0.00 0.00 4.30
1967 1986 2.084546 CCTTCATTTCCTCGAACACCC 58.915 52.381 0.00 0.00 0.00 4.61
1977 1996 0.804989 CACCGACAGCCTTCATTTCC 59.195 55.000 0.00 0.00 0.00 3.13
1995 2014 1.450134 GACATCATCAGGCGGCACA 60.450 57.895 13.08 0.00 0.00 4.57
2001 2020 1.083806 TGAACGCGACATCATCAGGC 61.084 55.000 15.93 0.00 0.00 4.85
2016 2035 1.021390 CAGTGAGCACCCCGATGAAC 61.021 60.000 0.00 0.00 0.00 3.18
2172 2191 1.440938 CGCGAACAAACTCCAACCCA 61.441 55.000 0.00 0.00 0.00 4.51
2232 2251 1.502163 GAGCACGACAAGCAGCAACT 61.502 55.000 0.00 0.00 0.00 3.16
2269 2288 0.694771 TCCCTGCTGATGCTTTCACT 59.305 50.000 0.00 0.00 40.48 3.41
2298 2317 0.755686 CCTCATGAGCAGGGTACTCC 59.244 60.000 17.76 0.00 32.98 3.85
2409 2428 3.673484 CAGCCCGGCACCTTTGTG 61.673 66.667 13.15 0.00 45.65 3.33
2769 2799 0.108615 AGCGATGGAAACGACTCCTG 60.109 55.000 8.63 1.59 36.35 3.86
2883 2917 2.390938 CTGCATGTGCTGTTGAAGTTG 58.609 47.619 6.55 0.00 42.66 3.16
2898 2932 0.320771 GAGTTCACGGTCACCTGCAT 60.321 55.000 0.00 0.00 0.00 3.96
2908 2942 6.421377 TGAAAATACATCATGAGTTCACGG 57.579 37.500 0.09 0.00 0.00 4.94
2940 2974 3.958935 CCTCAAGGACTTGCAGTTGCAG 61.959 54.545 6.91 4.75 45.01 4.41
2941 2975 2.086832 CCTCAAGGACTTGCAGTTGCA 61.087 52.381 2.03 2.03 43.53 4.08
2942 2976 0.595095 CCTCAAGGACTTGCAGTTGC 59.405 55.000 7.18 0.00 40.24 4.17
2943 2977 1.972872 ACCTCAAGGACTTGCAGTTG 58.027 50.000 7.18 0.00 40.24 3.16
2944 2978 2.689983 CAAACCTCAAGGACTTGCAGTT 59.310 45.455 7.18 9.66 40.24 3.16
2945 2979 2.301346 CAAACCTCAAGGACTTGCAGT 58.699 47.619 7.18 4.43 40.24 4.40
2978 3012 4.869861 ACATCAGTTTTTGGCTTTGTGTTC 59.130 37.500 0.00 0.00 0.00 3.18
3013 3057 2.811431 TGTTTCAATGCTACTTCCGGTG 59.189 45.455 0.00 0.00 0.00 4.94
3043 3088 5.419155 TCAGTACTCAAGGTGAAGTATCTGG 59.581 44.000 0.00 0.00 0.00 3.86
3060 3105 4.753233 GTGCTGATGAGACATTCAGTACT 58.247 43.478 12.08 0.00 46.03 2.73
3080 3125 8.511604 AGGAAATCTTAGTCCATAAATGTGTG 57.488 34.615 0.00 0.00 36.28 3.82
3090 3423 7.523415 AGGTTTTTGTAGGAAATCTTAGTCCA 58.477 34.615 0.00 0.00 36.28 4.02
3141 3474 2.038329 ATGCAAGCTGGGGCACAT 59.962 55.556 9.79 0.00 43.75 3.21
3341 3687 6.099413 AGCAATGGAGAATGAGATAGTTGAGA 59.901 38.462 0.00 0.00 0.00 3.27
3426 3772 2.548707 GGCCGAGATCAGCAACATCATA 60.549 50.000 0.00 0.00 0.00 2.15
3430 3776 0.035152 TTGGCCGAGATCAGCAACAT 60.035 50.000 0.00 0.00 0.00 2.71
3590 3936 5.930837 AATGAGAGACTCTACAAAGGGAG 57.069 43.478 4.57 0.00 35.86 4.30
3753 4100 4.270325 GGTTTGATCTAACAGCGGATACAC 59.730 45.833 19.38 0.00 0.00 2.90
3760 4107 4.394795 CGAAAAGGTTTGATCTAACAGCG 58.605 43.478 19.38 11.60 0.00 5.18
3783 4133 3.957671 AAGATGCACATCACGCAATAG 57.042 42.857 12.87 0.00 43.84 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.