Multiple sequence alignment - TraesCS5B01G493200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G493200 chr5B 100.000 3140 0 0 1 3140 661350729 661353868 0.000000e+00 5799
1 TraesCS5B01G493200 chr5B 84.674 261 40 0 1060 1320 661311454 661311194 8.640000e-66 261
2 TraesCS5B01G493200 chr5B 82.833 233 37 3 1089 1321 661253281 661253510 4.110000e-49 206
3 TraesCS5B01G493200 chr5B 80.077 261 50 2 1061 1320 661326860 661326601 3.200000e-45 193
4 TraesCS5B01G493200 chr5B 81.116 233 41 3 1089 1321 661268511 661268740 1.920000e-42 183
5 TraesCS5B01G493200 chr5A 91.805 1745 104 18 505 2247 653400568 653402275 0.000000e+00 2394
6 TraesCS5B01G493200 chr5A 87.903 372 23 7 7 357 653400197 653400567 4.840000e-113 418
7 TraesCS5B01G493200 chr5A 79.310 232 45 3 1089 1320 653373437 653373665 3.240000e-35 159
8 TraesCS5B01G493200 chr5D 86.618 1928 226 17 507 2425 526285545 526287449 0.000000e+00 2102
9 TraesCS5B01G493200 chr5D 87.801 582 51 10 2562 3139 526287751 526288316 0.000000e+00 664
10 TraesCS5B01G493200 chr5D 92.737 358 22 3 1 357 526285188 526285542 6.010000e-142 514
11 TraesCS5B01G493200 chr5D 85.625 160 20 3 1084 1241 526284075 526284233 6.970000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G493200 chr5B 661350729 661353868 3139 False 5799.00 5799 100.00000 1 3140 1 chr5B.!!$F3 3139
1 TraesCS5B01G493200 chr5A 653400197 653402275 2078 False 1406.00 2394 89.85400 7 2247 2 chr5A.!!$F2 2240
2 TraesCS5B01G493200 chr5D 526284075 526288316 4241 False 861.25 2102 88.19525 1 3139 4 chr5D.!!$F1 3138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 1962 0.033781 GTCAAAGCCAGCATTTGCCA 59.966 50.0 0.0 0.0 43.38 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2367 3515 0.036765 TGCAACGTCCCTATGTGACC 60.037 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 1154 1.135575 GGCACACAGAACTGCTAATGC 60.136 52.381 1.46 6.67 40.20 3.56
59 1174 1.135859 CCGTGCTTCTGTGAATTCAGC 60.136 52.381 8.80 9.00 35.63 4.26
64 1179 3.254060 GCTTCTGTGAATTCAGCGTCTA 58.746 45.455 8.80 0.00 35.63 2.59
79 1194 1.772182 GTCTATGGCTGGTTCGATCG 58.228 55.000 9.36 9.36 0.00 3.69
96 1211 6.687081 TCGATCGCCTTTTATAACCAAAAT 57.313 33.333 11.09 0.00 0.00 1.82
97 1212 7.789273 TCGATCGCCTTTTATAACCAAAATA 57.211 32.000 11.09 0.00 0.00 1.40
98 1213 7.857569 TCGATCGCCTTTTATAACCAAAATAG 58.142 34.615 11.09 0.00 0.00 1.73
178 1293 9.968870 GATACTCGAGTTTATACCTCAGAATTT 57.031 33.333 25.44 0.00 0.00 1.82
207 1343 9.369904 ACTTTCGTTAGTAAACTTTGTTCTGTA 57.630 29.630 0.00 0.00 33.15 2.74
240 1378 4.083696 CCATTTGACCTGTAACAACGGTAC 60.084 45.833 0.00 0.00 0.00 3.34
241 1379 3.815856 TTGACCTGTAACAACGGTACA 57.184 42.857 0.00 0.00 0.00 2.90
328 1466 1.607801 CCGACAGGCTGATGTGGAGA 61.608 60.000 23.66 0.00 32.25 3.71
353 1491 8.276453 AGGATGGCCTAACTACTATTTATGTT 57.724 34.615 3.32 0.00 44.74 2.71
356 1494 6.834107 TGGCCTAACTACTATTTATGTTCCC 58.166 40.000 3.32 0.00 0.00 3.97
357 1495 6.618196 TGGCCTAACTACTATTTATGTTCCCT 59.382 38.462 3.32 0.00 0.00 4.20
358 1496 6.935208 GGCCTAACTACTATTTATGTTCCCTG 59.065 42.308 0.00 0.00 0.00 4.45
359 1497 7.419865 GGCCTAACTACTATTTATGTTCCCTGT 60.420 40.741 0.00 0.00 0.00 4.00
360 1498 7.441458 GCCTAACTACTATTTATGTTCCCTGTG 59.559 40.741 0.00 0.00 0.00 3.66
361 1499 7.441458 CCTAACTACTATTTATGTTCCCTGTGC 59.559 40.741 0.00 0.00 0.00 4.57
362 1500 5.357257 ACTACTATTTATGTTCCCTGTGCG 58.643 41.667 0.00 0.00 0.00 5.34
363 1501 4.216411 ACTATTTATGTTCCCTGTGCGT 57.784 40.909 0.00 0.00 0.00 5.24
364 1502 3.938963 ACTATTTATGTTCCCTGTGCGTG 59.061 43.478 0.00 0.00 0.00 5.34
365 1503 0.878416 TTTATGTTCCCTGTGCGTGC 59.122 50.000 0.00 0.00 0.00 5.34
366 1504 1.295357 TTATGTTCCCTGTGCGTGCG 61.295 55.000 0.00 0.00 0.00 5.34
369 1507 4.980805 TTCCCTGTGCGTGCGGTC 62.981 66.667 0.00 0.00 0.00 4.79
372 1510 4.969196 CCTGTGCGTGCGGTCACT 62.969 66.667 4.17 0.00 40.99 3.41
373 1511 3.705638 CTGTGCGTGCGGTCACTG 61.706 66.667 4.17 0.58 40.99 3.66
375 1513 4.961511 GTGCGTGCGGTCACTGGA 62.962 66.667 0.00 0.00 40.99 3.86
376 1514 4.662961 TGCGTGCGGTCACTGGAG 62.663 66.667 0.00 0.00 40.99 3.86
377 1515 4.357947 GCGTGCGGTCACTGGAGA 62.358 66.667 0.00 0.00 40.99 3.71
378 1516 2.430921 CGTGCGGTCACTGGAGAC 60.431 66.667 0.00 0.00 40.99 3.36
379 1517 2.430921 GTGCGGTCACTGGAGACG 60.431 66.667 0.00 0.00 40.03 4.18
380 1518 3.680786 TGCGGTCACTGGAGACGG 61.681 66.667 0.00 0.00 39.42 4.79
381 1519 4.436998 GCGGTCACTGGAGACGGG 62.437 72.222 10.42 1.97 42.76 5.28
382 1520 2.675423 CGGTCACTGGAGACGGGA 60.675 66.667 0.00 0.00 42.76 5.14
383 1521 2.273179 CGGTCACTGGAGACGGGAA 61.273 63.158 0.00 0.00 42.76 3.97
384 1522 1.812686 CGGTCACTGGAGACGGGAAA 61.813 60.000 0.00 0.00 42.76 3.13
385 1523 0.320508 GGTCACTGGAGACGGGAAAC 60.321 60.000 0.00 0.00 42.76 2.78
397 1535 3.567473 GGAAACCACTGCTCGCTC 58.433 61.111 0.00 0.00 0.00 5.03
398 1536 1.301716 GGAAACCACTGCTCGCTCA 60.302 57.895 0.00 0.00 0.00 4.26
399 1537 0.884704 GGAAACCACTGCTCGCTCAA 60.885 55.000 0.00 0.00 0.00 3.02
400 1538 1.160137 GAAACCACTGCTCGCTCAAT 58.840 50.000 0.00 0.00 0.00 2.57
401 1539 0.877071 AAACCACTGCTCGCTCAATG 59.123 50.000 0.00 0.00 0.00 2.82
402 1540 1.580845 AACCACTGCTCGCTCAATGC 61.581 55.000 0.00 0.00 38.57 3.56
403 1541 2.758089 CCACTGCTCGCTCAATGCC 61.758 63.158 0.00 0.00 38.78 4.40
404 1542 2.437359 ACTGCTCGCTCAATGCCC 60.437 61.111 0.00 0.00 38.78 5.36
405 1543 3.570638 CTGCTCGCTCAATGCCCG 61.571 66.667 0.00 0.00 38.78 6.13
408 1546 3.197790 CTCGCTCAATGCCCGGTG 61.198 66.667 0.00 0.00 38.78 4.94
420 1558 3.499737 CCGGTGCCGTGCTTCATC 61.500 66.667 9.90 0.00 37.81 2.92
421 1559 2.434884 CGGTGCCGTGCTTCATCT 60.435 61.111 1.93 0.00 34.35 2.90
422 1560 2.743752 CGGTGCCGTGCTTCATCTG 61.744 63.158 1.93 0.00 34.35 2.90
423 1561 2.401766 GGTGCCGTGCTTCATCTGG 61.402 63.158 0.00 0.00 0.00 3.86
424 1562 2.747460 TGCCGTGCTTCATCTGGC 60.747 61.111 0.00 0.00 45.91 4.85
425 1563 2.437359 GCCGTGCTTCATCTGGCT 60.437 61.111 0.00 0.00 42.44 4.75
426 1564 2.758089 GCCGTGCTTCATCTGGCTG 61.758 63.158 0.00 0.00 42.44 4.85
427 1565 2.110967 CCGTGCTTCATCTGGCTGG 61.111 63.158 0.00 0.00 0.00 4.85
428 1566 1.078918 CGTGCTTCATCTGGCTGGA 60.079 57.895 0.00 0.00 0.00 3.86
429 1567 0.463295 CGTGCTTCATCTGGCTGGAT 60.463 55.000 0.00 0.00 0.00 3.41
430 1568 1.022735 GTGCTTCATCTGGCTGGATG 58.977 55.000 12.47 12.47 43.01 3.51
431 1569 0.622136 TGCTTCATCTGGCTGGATGT 59.378 50.000 16.21 0.00 42.45 3.06
432 1570 1.307097 GCTTCATCTGGCTGGATGTC 58.693 55.000 16.21 7.44 42.45 3.06
433 1571 1.579698 CTTCATCTGGCTGGATGTCG 58.420 55.000 16.21 8.40 42.45 4.35
434 1572 0.462581 TTCATCTGGCTGGATGTCGC 60.463 55.000 16.21 0.00 42.45 5.19
435 1573 1.145598 CATCTGGCTGGATGTCGCT 59.854 57.895 11.09 0.00 38.49 4.93
436 1574 0.390492 CATCTGGCTGGATGTCGCTA 59.610 55.000 11.09 0.00 38.49 4.26
437 1575 0.390860 ATCTGGCTGGATGTCGCTAC 59.609 55.000 0.00 0.00 0.00 3.58
438 1576 1.227380 CTGGCTGGATGTCGCTACC 60.227 63.158 0.00 0.00 0.00 3.18
439 1577 1.680522 CTGGCTGGATGTCGCTACCT 61.681 60.000 0.00 0.00 0.00 3.08
440 1578 1.227380 GGCTGGATGTCGCTACCTG 60.227 63.158 0.00 0.00 0.00 4.00
441 1579 1.884926 GCTGGATGTCGCTACCTGC 60.885 63.158 0.00 0.00 40.25 4.85
442 1580 1.227380 CTGGATGTCGCTACCTGCC 60.227 63.158 0.00 0.00 38.78 4.85
443 1581 1.960040 CTGGATGTCGCTACCTGCCA 61.960 60.000 0.00 0.00 38.78 4.92
444 1582 1.337384 TGGATGTCGCTACCTGCCAT 61.337 55.000 0.00 0.00 38.78 4.40
445 1583 0.882042 GGATGTCGCTACCTGCCATG 60.882 60.000 0.00 0.00 38.78 3.66
446 1584 0.104855 GATGTCGCTACCTGCCATGA 59.895 55.000 0.00 0.00 38.78 3.07
447 1585 0.179073 ATGTCGCTACCTGCCATGAC 60.179 55.000 0.00 0.00 38.78 3.06
448 1586 1.521681 GTCGCTACCTGCCATGACC 60.522 63.158 0.00 0.00 38.78 4.02
449 1587 1.987306 TCGCTACCTGCCATGACCA 60.987 57.895 0.00 0.00 38.78 4.02
450 1588 1.815421 CGCTACCTGCCATGACCAC 60.815 63.158 0.00 0.00 38.78 4.16
451 1589 1.815421 GCTACCTGCCATGACCACG 60.815 63.158 0.00 0.00 35.15 4.94
452 1590 1.153369 CTACCTGCCATGACCACGG 60.153 63.158 0.00 0.00 0.00 4.94
453 1591 1.899437 CTACCTGCCATGACCACGGT 61.899 60.000 0.00 3.95 0.00 4.83
454 1592 2.178876 TACCTGCCATGACCACGGTG 62.179 60.000 0.00 0.00 0.00 4.94
455 1593 2.747460 CTGCCATGACCACGGTGG 60.747 66.667 25.21 25.21 45.02 4.61
458 1596 4.033776 CCATGACCACGGTGGCCT 62.034 66.667 26.62 8.66 42.67 5.19
459 1597 2.436646 CATGACCACGGTGGCCTC 60.437 66.667 26.62 17.65 42.67 4.70
460 1598 4.082523 ATGACCACGGTGGCCTCG 62.083 66.667 26.62 15.57 42.67 4.63
462 1600 4.736896 GACCACGGTGGCCTCGTC 62.737 72.222 26.62 12.63 42.67 4.20
467 1605 4.530857 CGGTGGCCTCGTCCCATC 62.531 72.222 3.32 0.00 34.34 3.51
468 1606 3.399181 GGTGGCCTCGTCCCATCA 61.399 66.667 3.32 0.00 33.57 3.07
469 1607 2.125106 GTGGCCTCGTCCCATCAC 60.125 66.667 3.32 0.00 34.34 3.06
470 1608 2.284625 TGGCCTCGTCCCATCACT 60.285 61.111 3.32 0.00 0.00 3.41
471 1609 1.001120 TGGCCTCGTCCCATCACTA 59.999 57.895 3.32 0.00 0.00 2.74
472 1610 0.398522 TGGCCTCGTCCCATCACTAT 60.399 55.000 3.32 0.00 0.00 2.12
473 1611 0.034059 GGCCTCGTCCCATCACTATG 59.966 60.000 0.00 0.00 0.00 2.23
483 1621 2.827800 CATCACTATGGACAGCGGAT 57.172 50.000 0.00 0.00 0.00 4.18
484 1622 2.681706 CATCACTATGGACAGCGGATC 58.318 52.381 0.00 0.00 0.00 3.36
485 1623 1.040646 TCACTATGGACAGCGGATCC 58.959 55.000 0.00 0.00 36.70 3.36
486 1624 0.319040 CACTATGGACAGCGGATCCG 60.319 60.000 30.03 30.03 39.30 4.18
487 1625 0.467474 ACTATGGACAGCGGATCCGA 60.467 55.000 37.64 16.16 42.83 4.55
488 1626 0.673985 CTATGGACAGCGGATCCGAA 59.326 55.000 37.64 14.58 42.83 4.30
489 1627 1.068588 CTATGGACAGCGGATCCGAAA 59.931 52.381 37.64 14.94 42.83 3.46
490 1628 0.179073 ATGGACAGCGGATCCGAAAG 60.179 55.000 37.64 25.57 42.83 2.62
491 1629 1.218316 GGACAGCGGATCCGAAAGT 59.782 57.895 37.64 28.46 42.83 2.66
492 1630 1.084370 GGACAGCGGATCCGAAAGTG 61.084 60.000 37.64 26.63 42.83 3.16
493 1631 1.696832 GACAGCGGATCCGAAAGTGC 61.697 60.000 37.64 18.32 42.83 4.40
494 1632 1.741401 CAGCGGATCCGAAAGTGCA 60.741 57.895 37.64 0.00 42.83 4.57
495 1633 1.448540 AGCGGATCCGAAAGTGCAG 60.449 57.895 37.64 5.68 42.83 4.41
496 1634 2.464459 GCGGATCCGAAAGTGCAGG 61.464 63.158 37.64 4.87 42.83 4.85
497 1635 1.218047 CGGATCCGAAAGTGCAGGA 59.782 57.895 30.62 0.00 42.83 3.86
498 1636 0.179073 CGGATCCGAAAGTGCAGGAT 60.179 55.000 30.62 4.18 46.51 3.24
499 1637 1.068588 CGGATCCGAAAGTGCAGGATA 59.931 52.381 30.62 0.00 44.13 2.59
500 1638 2.289072 CGGATCCGAAAGTGCAGGATAT 60.289 50.000 30.62 0.00 44.13 1.63
501 1639 3.744660 GGATCCGAAAGTGCAGGATATT 58.255 45.455 4.51 0.00 44.13 1.28
502 1640 4.137543 GGATCCGAAAGTGCAGGATATTT 58.862 43.478 4.51 0.00 44.13 1.40
503 1641 4.023707 GGATCCGAAAGTGCAGGATATTTG 60.024 45.833 4.51 0.00 44.13 2.32
531 1669 4.278975 AGCTATTAGTAATCCTGGCAGC 57.721 45.455 9.56 2.01 0.00 5.25
549 1687 1.680735 AGCACGTGCATCAAAGGAAAA 59.319 42.857 39.21 0.00 45.16 2.29
569 1707 3.813529 AAAAACGCTTCTCATTCTCGG 57.186 42.857 0.00 0.00 0.00 4.63
572 1710 2.457366 ACGCTTCTCATTCTCGGTTT 57.543 45.000 0.00 0.00 0.00 3.27
573 1711 2.069273 ACGCTTCTCATTCTCGGTTTG 58.931 47.619 0.00 0.00 0.00 2.93
602 1740 2.644299 TCTGGCTTGAAGGAATTGGAGA 59.356 45.455 0.00 0.00 0.00 3.71
616 1754 8.142485 AGGAATTGGAGAATTTTCAATGACAT 57.858 30.769 0.00 0.00 31.58 3.06
618 1756 7.201582 GGAATTGGAGAATTTTCAATGACATGC 60.202 37.037 0.00 0.00 31.58 4.06
622 1760 4.171005 AGAATTTTCAATGACATGCAGCG 58.829 39.130 0.00 0.00 0.00 5.18
627 1765 2.466982 AATGACATGCAGCGCTCGG 61.467 57.895 7.13 0.00 0.00 4.63
647 1785 1.342819 GCGACTCAGATTATCCTGGCT 59.657 52.381 0.00 0.00 34.99 4.75
713 1851 0.103026 TCGATCATCTGGGAGTTGCG 59.897 55.000 0.00 0.00 0.00 4.85
720 1858 1.597854 CTGGGAGTTGCGCTGAACA 60.598 57.895 9.73 0.00 0.00 3.18
721 1859 0.957395 CTGGGAGTTGCGCTGAACAT 60.957 55.000 9.73 0.00 0.00 2.71
726 1864 0.870393 AGTTGCGCTGAACATGACTG 59.130 50.000 9.73 0.00 0.00 3.51
727 1865 0.727122 GTTGCGCTGAACATGACTGC 60.727 55.000 9.73 7.97 0.00 4.40
750 1888 4.568592 CCTCTGGGCTCTGTCCTTTTATTT 60.569 45.833 0.00 0.00 0.00 1.40
758 1896 7.813148 GGGCTCTGTCCTTTTATTTAAAGTTTC 59.187 37.037 0.00 0.00 41.41 2.78
795 1933 9.336171 ACTCTGATCTTTTATCCTTTTGCTATC 57.664 33.333 0.00 0.00 0.00 2.08
824 1962 0.033781 GTCAAAGCCAGCATTTGCCA 59.966 50.000 0.00 0.00 43.38 4.92
834 1972 3.490933 CCAGCATTTGCCAGATCATTCAG 60.491 47.826 0.00 0.00 43.38 3.02
867 2008 3.454082 CAGGCCTTACTCTCTGGAAAGAT 59.546 47.826 0.00 0.00 0.00 2.40
904 2045 1.228675 CCTTGCAAGCCTCCAACCT 60.229 57.895 21.43 0.00 0.00 3.50
922 2063 2.639839 ACCTGACAAACTATCCACAGCT 59.360 45.455 0.00 0.00 0.00 4.24
927 2068 6.348540 CCTGACAAACTATCCACAGCTAAAAC 60.349 42.308 0.00 0.00 0.00 2.43
930 2071 7.934665 TGACAAACTATCCACAGCTAAAACTTA 59.065 33.333 0.00 0.00 0.00 2.24
969 2111 7.690952 TTTTTGTTTCTTGTACAGTACAGGT 57.309 32.000 19.40 0.00 40.24 4.00
970 2112 6.913873 TTTGTTTCTTGTACAGTACAGGTC 57.086 37.500 19.40 12.78 40.24 3.85
971 2113 4.952460 TGTTTCTTGTACAGTACAGGTCC 58.048 43.478 19.40 10.79 40.24 4.46
972 2114 4.652421 TGTTTCTTGTACAGTACAGGTCCT 59.348 41.667 19.40 0.00 40.24 3.85
973 2115 4.866508 TTCTTGTACAGTACAGGTCCTG 57.133 45.455 17.88 17.88 40.24 3.86
1008 2150 3.123804 GGTGATACAACCTATGAGCACG 58.876 50.000 0.00 0.00 37.24 5.34
1057 2201 3.851976 TCTCCTTTCCTCCATTTCCATGA 59.148 43.478 0.00 0.00 31.07 3.07
1086 2230 5.246307 GCAGAACAGACAGTTTACCCTATT 58.754 41.667 0.00 0.00 41.51 1.73
1128 2272 1.342496 CTCACCAGCAGAGTGTTCTCA 59.658 52.381 1.42 0.00 42.66 3.27
1235 2379 0.608640 ATTGAGGCGTCCGAGAAACT 59.391 50.000 3.56 0.00 0.00 2.66
1326 2470 2.767536 GCTTGCCAGCTTCATACGA 58.232 52.632 1.78 0.00 43.51 3.43
1357 2501 1.601759 GCTGAAGCCACAAGGAGCA 60.602 57.895 0.00 0.00 36.89 4.26
1485 2629 1.963855 CATCCGTGACGCAACCCAA 60.964 57.895 0.00 0.00 0.00 4.12
1488 2632 1.301087 CCGTGACGCAACCCAAGTA 60.301 57.895 0.00 0.00 0.00 2.24
1499 2643 3.065648 GCAACCCAAGTACTGTTTTCGAA 59.934 43.478 0.00 0.00 0.00 3.71
1503 2647 5.313712 ACCCAAGTACTGTTTTCGAATGAT 58.686 37.500 0.00 0.00 0.00 2.45
1523 2667 4.698780 TGATGAAGACATGGAAAAGCTGAG 59.301 41.667 0.00 0.00 36.82 3.35
1526 2670 2.867624 AGACATGGAAAAGCTGAGCAA 58.132 42.857 7.39 0.00 0.00 3.91
1527 2671 3.225104 AGACATGGAAAAGCTGAGCAAA 58.775 40.909 7.39 0.00 0.00 3.68
1545 2689 4.887071 AGCAAAACACTGGACATGTTAGAA 59.113 37.500 15.46 0.00 39.36 2.10
1548 2692 5.751243 AAACACTGGACATGTTAGAACAC 57.249 39.130 15.46 0.00 42.51 3.32
1556 2700 3.162666 ACATGTTAGAACACCTCTCCGA 58.837 45.455 0.00 0.00 42.51 4.55
1607 2751 1.228552 TTGAGGACTGGGCAAAGGC 60.229 57.895 0.00 0.00 40.13 4.35
1616 2760 2.041620 ACTGGGCAAAGGCAGATCTAAA 59.958 45.455 0.00 0.00 43.71 1.85
1636 2780 7.515586 TCTAAAATCTACCGAGAGTATGGAGA 58.484 38.462 0.00 0.00 34.35 3.71
1733 2880 7.672983 TCAAATTAGATGAGGAAGACACAAC 57.327 36.000 0.00 0.00 0.00 3.32
1760 2907 2.994995 TCCGTGCGTGGAGGATGT 60.995 61.111 0.00 0.00 33.05 3.06
1805 2952 4.701651 TCTTTCGATCAATGAAATGGCAGT 59.298 37.500 0.00 0.00 35.01 4.40
1884 3031 0.958876 TCTGCAAGACCGTCGAGCTA 60.959 55.000 15.95 5.32 38.67 3.32
1920 3067 0.482446 TTGGGGACATGAAGTGGCTT 59.518 50.000 0.00 0.00 42.32 4.35
1986 3133 0.396435 TCGTTCTTGGCACCATCAGT 59.604 50.000 0.00 0.00 0.00 3.41
2001 3148 2.232756 TCAGTGCTCGCAAAACACTA 57.767 45.000 0.00 0.00 42.59 2.74
2004 3151 1.873591 AGTGCTCGCAAAACACTAAGG 59.126 47.619 0.00 0.00 42.65 2.69
2167 3314 8.454106 GCTAACTTGTTGTTATCATGTCAAGAT 58.546 33.333 9.21 0.00 40.02 2.40
2177 3324 2.014857 CATGTCAAGATGGCTCACCTG 58.985 52.381 0.00 0.00 36.63 4.00
2209 3356 6.716934 GACAGGAAGTCTAGATCCATTGTA 57.283 41.667 13.68 0.00 44.09 2.41
2210 3357 7.113658 GACAGGAAGTCTAGATCCATTGTAA 57.886 40.000 13.68 0.00 44.09 2.41
2211 3358 7.496346 ACAGGAAGTCTAGATCCATTGTAAA 57.504 36.000 13.68 0.00 38.23 2.01
2249 3396 9.190317 TCTCTTTAGATTAGAAGACATGCTGTA 57.810 33.333 0.00 0.00 0.00 2.74
2309 3456 3.437049 GGTTGAGCTCTGATTGTGTAACC 59.563 47.826 16.19 12.61 34.36 2.85
2324 3471 5.874831 TGTGTAACCGATGATGCAATTAAC 58.125 37.500 0.00 0.00 34.36 2.01
2325 3472 5.412904 TGTGTAACCGATGATGCAATTAACA 59.587 36.000 0.00 0.00 34.36 2.41
2327 3474 6.972328 GTGTAACCGATGATGCAATTAACAAT 59.028 34.615 0.00 0.00 0.00 2.71
2331 3478 7.524294 ACCGATGATGCAATTAACAATTTTC 57.476 32.000 0.00 0.00 0.00 2.29
2340 3487 8.810652 TGCAATTAACAATTTTCAGTAGGTTC 57.189 30.769 0.00 0.00 0.00 3.62
2351 3499 7.730364 TTTTCAGTAGGTTCTTTTAGCTCAG 57.270 36.000 0.00 0.00 0.00 3.35
2360 3508 4.737855 TCTTTTAGCTCAGCCGATAAGT 57.262 40.909 0.00 0.00 0.00 2.24
2367 3515 2.352960 GCTCAGCCGATAAGTTCCTTTG 59.647 50.000 0.00 0.00 0.00 2.77
2401 3550 3.253188 ACGTTGCATTGTACAGCAGAAAT 59.747 39.130 9.44 0.00 42.39 2.17
2408 3557 5.801947 GCATTGTACAGCAGAAATAAGGTTG 59.198 40.000 2.40 0.00 0.00 3.77
2411 3560 2.807676 ACAGCAGAAATAAGGTTGGGG 58.192 47.619 0.00 0.00 0.00 4.96
2415 3564 3.076032 AGCAGAAATAAGGTTGGGGAACT 59.924 43.478 0.00 0.00 0.00 3.01
2416 3565 4.291249 AGCAGAAATAAGGTTGGGGAACTA 59.709 41.667 0.00 0.00 0.00 2.24
2425 3574 3.082548 GGTTGGGGAACTAAAGAAGCTC 58.917 50.000 0.00 0.00 30.16 4.09
2427 3576 2.253610 TGGGGAACTAAAGAAGCTCGA 58.746 47.619 0.00 0.00 0.00 4.04
2428 3577 2.635915 TGGGGAACTAAAGAAGCTCGAA 59.364 45.455 0.00 0.00 0.00 3.71
2429 3578 3.263261 GGGGAACTAAAGAAGCTCGAAG 58.737 50.000 0.00 0.00 0.00 3.79
2430 3579 3.263261 GGGAACTAAAGAAGCTCGAAGG 58.737 50.000 0.00 0.00 0.00 3.46
2431 3580 3.306849 GGGAACTAAAGAAGCTCGAAGGT 60.307 47.826 0.00 0.00 0.00 3.50
2432 3581 3.680458 GGAACTAAAGAAGCTCGAAGGTG 59.320 47.826 0.00 0.00 0.00 4.00
2433 3582 4.308265 GAACTAAAGAAGCTCGAAGGTGT 58.692 43.478 0.00 0.00 0.00 4.16
2434 3583 4.338379 ACTAAAGAAGCTCGAAGGTGTT 57.662 40.909 0.00 0.00 0.00 3.32
2435 3584 4.058817 ACTAAAGAAGCTCGAAGGTGTTG 58.941 43.478 0.00 0.00 0.00 3.33
2436 3585 1.884235 AAGAAGCTCGAAGGTGTTGG 58.116 50.000 0.00 0.00 0.00 3.77
2437 3586 1.048601 AGAAGCTCGAAGGTGTTGGA 58.951 50.000 0.00 0.00 0.00 3.53
2438 3587 1.416401 AGAAGCTCGAAGGTGTTGGAA 59.584 47.619 0.00 0.00 0.00 3.53
2439 3588 1.531578 GAAGCTCGAAGGTGTTGGAAC 59.468 52.381 0.00 0.00 0.00 3.62
2440 3589 0.759346 AGCTCGAAGGTGTTGGAACT 59.241 50.000 0.00 0.00 0.00 3.01
2441 3590 0.868406 GCTCGAAGGTGTTGGAACTG 59.132 55.000 0.00 0.00 0.00 3.16
2442 3591 0.868406 CTCGAAGGTGTTGGAACTGC 59.132 55.000 0.00 0.00 0.00 4.40
2453 3602 4.449068 GTGTTGGAACTGCGGATATATCAG 59.551 45.833 14.60 11.45 0.00 2.90
2458 3607 7.239763 TGGAACTGCGGATATATCAGAATTA 57.760 36.000 15.98 0.00 0.00 1.40
2459 3608 7.323420 TGGAACTGCGGATATATCAGAATTAG 58.677 38.462 15.98 9.97 0.00 1.73
2460 3609 7.039011 TGGAACTGCGGATATATCAGAATTAGT 60.039 37.037 15.98 10.48 0.00 2.24
2461 3610 8.467598 GGAACTGCGGATATATCAGAATTAGTA 58.532 37.037 15.98 0.00 0.00 1.82
2462 3611 9.509855 GAACTGCGGATATATCAGAATTAGTAG 57.490 37.037 15.98 8.09 0.00 2.57
2463 3612 8.809468 ACTGCGGATATATCAGAATTAGTAGA 57.191 34.615 15.98 0.00 0.00 2.59
2464 3613 8.898761 ACTGCGGATATATCAGAATTAGTAGAG 58.101 37.037 15.98 0.00 0.00 2.43
2465 3614 7.708051 TGCGGATATATCAGAATTAGTAGAGC 58.292 38.462 15.98 2.99 0.00 4.09
2466 3615 7.142680 GCGGATATATCAGAATTAGTAGAGCC 58.857 42.308 15.98 0.00 0.00 4.70
2467 3616 7.201830 GCGGATATATCAGAATTAGTAGAGCCA 60.202 40.741 15.98 0.00 0.00 4.75
2468 3617 8.855110 CGGATATATCAGAATTAGTAGAGCCAT 58.145 37.037 14.60 0.00 0.00 4.40
2475 3624 8.306313 TCAGAATTAGTAGAGCCATAAAGTCA 57.694 34.615 0.00 0.00 0.00 3.41
2495 3644 2.279582 AGATCTTTGTGGTACGAGCG 57.720 50.000 0.00 0.00 0.00 5.03
2504 3653 2.104530 GTACGAGCGGAAGGAGCC 59.895 66.667 0.00 0.00 34.64 4.70
2509 3658 0.108329 CGAGCGGAAGGAGCCTTAAA 60.108 55.000 0.94 0.00 36.26 1.52
2510 3659 1.370609 GAGCGGAAGGAGCCTTAAAC 58.629 55.000 0.94 0.00 36.26 2.01
2514 3663 2.084546 CGGAAGGAGCCTTAAACCTTG 58.915 52.381 0.94 0.00 42.98 3.61
2515 3664 2.447443 GGAAGGAGCCTTAAACCTTGG 58.553 52.381 0.94 0.00 42.98 3.61
2516 3665 2.225041 GGAAGGAGCCTTAAACCTTGGT 60.225 50.000 0.94 0.00 42.98 3.67
2517 3666 3.497332 GAAGGAGCCTTAAACCTTGGTT 58.503 45.455 0.94 0.00 42.98 3.67
2518 3667 3.156288 AGGAGCCTTAAACCTTGGTTC 57.844 47.619 5.43 0.00 0.00 3.62
2519 3668 2.716969 AGGAGCCTTAAACCTTGGTTCT 59.283 45.455 5.43 0.00 32.73 3.01
2520 3669 2.820197 GGAGCCTTAAACCTTGGTTCTG 59.180 50.000 5.43 0.00 32.73 3.02
2521 3670 2.229062 GAGCCTTAAACCTTGGTTCTGC 59.771 50.000 5.43 6.49 0.00 4.26
2522 3671 2.158460 AGCCTTAAACCTTGGTTCTGCT 60.158 45.455 5.43 8.43 0.00 4.24
2523 3672 2.229062 GCCTTAAACCTTGGTTCTGCTC 59.771 50.000 5.43 0.00 0.00 4.26
2524 3673 3.756117 CCTTAAACCTTGGTTCTGCTCT 58.244 45.455 5.43 0.00 0.00 4.09
2553 3702 4.406456 AGTCAATTTCAATGGGTGCTACA 58.594 39.130 0.00 0.00 0.00 2.74
2554 3703 4.460382 AGTCAATTTCAATGGGTGCTACAG 59.540 41.667 0.00 0.00 0.00 2.74
2572 3721 2.233271 CAGTGCTGGAAAGACAACCAT 58.767 47.619 0.00 0.00 35.54 3.55
2576 3725 4.702131 AGTGCTGGAAAGACAACCATATTC 59.298 41.667 0.00 0.00 35.54 1.75
2578 3727 5.880332 GTGCTGGAAAGACAACCATATTCTA 59.120 40.000 0.00 0.00 35.54 2.10
2607 3965 2.027469 GGTGGTTCTGACCCGATAGTTT 60.027 50.000 0.00 0.00 45.92 2.66
2609 3967 3.435671 GTGGTTCTGACCCGATAGTTTTG 59.564 47.826 0.00 0.00 45.92 2.44
2612 3970 3.247006 TCTGACCCGATAGTTTTGAGC 57.753 47.619 0.00 0.00 0.00 4.26
2614 3972 2.932614 CTGACCCGATAGTTTTGAGCTG 59.067 50.000 0.00 0.00 0.00 4.24
2615 3973 2.565391 TGACCCGATAGTTTTGAGCTGA 59.435 45.455 0.00 0.00 0.00 4.26
2616 3974 3.007506 TGACCCGATAGTTTTGAGCTGAA 59.992 43.478 0.00 0.00 0.00 3.02
2618 3976 5.105106 TGACCCGATAGTTTTGAGCTGAATA 60.105 40.000 0.00 0.00 0.00 1.75
2619 3977 5.360591 ACCCGATAGTTTTGAGCTGAATAG 58.639 41.667 0.00 0.00 0.00 1.73
2644 4002 8.435187 AGCTTCTATGATCCACTTTGATGAATA 58.565 33.333 0.00 0.00 0.00 1.75
2668 4026 3.420300 TTTGCCGGTAGAACCAATACA 57.580 42.857 1.90 0.00 38.47 2.29
2669 4027 2.684001 TGCCGGTAGAACCAATACAG 57.316 50.000 1.90 0.00 38.47 2.74
2670 4028 1.208535 TGCCGGTAGAACCAATACAGG 59.791 52.381 1.90 0.00 38.47 4.00
2672 4030 1.140252 CCGGTAGAACCAATACAGGGG 59.860 57.143 0.00 0.00 38.47 4.79
2673 4031 1.140252 CGGTAGAACCAATACAGGGGG 59.860 57.143 0.00 0.00 38.47 5.40
2742 4103 5.627172 GCGATAGACACTAAGATCAGCTAG 58.373 45.833 0.00 0.00 39.76 3.42
2745 4106 7.518161 CGATAGACACTAAGATCAGCTAGAAG 58.482 42.308 0.00 0.00 39.76 2.85
2755 4116 5.083821 AGATCAGCTAGAAGTTATCTCCCC 58.916 45.833 0.00 0.00 39.71 4.81
2759 4120 4.410555 CAGCTAGAAGTTATCTCCCCCTTT 59.589 45.833 0.00 0.00 39.71 3.11
2766 4127 7.939781 AGAAGTTATCTCCCCCTTTTATTTGA 58.060 34.615 0.00 0.00 30.46 2.69
2778 4139 6.150474 CCCCTTTTATTTGACATCGTTGTAGT 59.850 38.462 0.00 0.00 35.79 2.73
2779 4140 7.241376 CCCTTTTATTTGACATCGTTGTAGTC 58.759 38.462 0.00 0.00 35.79 2.59
2795 4156 5.601583 TGTAGTCACTTGTTTGTACTCCA 57.398 39.130 0.00 0.00 0.00 3.86
2797 4158 6.220930 TGTAGTCACTTGTTTGTACTCCATC 58.779 40.000 0.00 0.00 0.00 3.51
2806 4167 0.033503 TGTACTCCATCCCAGCTCGA 60.034 55.000 0.00 0.00 0.00 4.04
2808 4169 0.755698 TACTCCATCCCAGCTCGACC 60.756 60.000 0.00 0.00 0.00 4.79
2809 4170 2.038813 TCCATCCCAGCTCGACCA 59.961 61.111 0.00 0.00 0.00 4.02
2817 4178 1.613437 CCCAGCTCGACCATTTTGTTT 59.387 47.619 0.00 0.00 0.00 2.83
2818 4179 2.607771 CCCAGCTCGACCATTTTGTTTG 60.608 50.000 0.00 0.00 0.00 2.93
2832 4193 2.350899 TGTTTGCATGCTCATTTCCG 57.649 45.000 20.33 0.00 0.00 4.30
2835 4196 2.855660 TTGCATGCTCATTTCCGATG 57.144 45.000 20.33 0.00 0.00 3.84
2862 4223 6.909550 TCCAAGCTGCCTTTAAATCTTTAA 57.090 33.333 0.00 0.00 0.00 1.52
2873 4234 7.702348 GCCTTTAAATCTTTAATGCAAGACGAT 59.298 33.333 0.00 0.00 35.57 3.73
2874 4235 9.013490 CCTTTAAATCTTTAATGCAAGACGATG 57.987 33.333 0.00 0.00 35.57 3.84
2918 4280 9.504708 CAAGGAATCTAAATATTCTGATCAGCT 57.495 33.333 18.36 10.05 36.34 4.24
2923 4285 7.609097 TCTAAATATTCTGATCAGCTCCAGT 57.391 36.000 18.36 4.62 0.00 4.00
2935 4297 0.390340 GCTCCAGTCATCGTTCAGCA 60.390 55.000 0.00 0.00 0.00 4.41
2960 4322 0.825410 AGCTGAGCATCTCACTGGAG 59.175 55.000 7.39 0.00 42.80 3.86
2987 4349 6.382570 AGTTATATGAGCTGTCCCCAGATATC 59.617 42.308 0.00 0.00 41.50 1.63
2988 4350 1.332195 TGAGCTGTCCCCAGATATCG 58.668 55.000 0.00 0.00 41.50 2.92
3003 4365 4.685165 CAGATATCGCAGAGTTCATCTTGG 59.315 45.833 0.00 0.00 43.63 3.61
3024 4386 0.035056 GCTGCAGGTGGAGGTATTGT 60.035 55.000 17.12 0.00 33.79 2.71
3026 4388 1.278985 CTGCAGGTGGAGGTATTGTCA 59.721 52.381 5.57 0.00 0.00 3.58
3040 4402 7.187824 AGGTATTGTCAAAGATAGAGCAGAA 57.812 36.000 0.00 0.00 0.00 3.02
3060 4422 0.319641 ACCTGCCGAAAGAACGAGAC 60.320 55.000 0.00 0.00 35.09 3.36
3078 4440 4.135306 GAGACGGTCTACATCACCATCTA 58.865 47.826 11.27 0.00 36.59 1.98
3117 4479 1.055849 ACTGTGGCACTGTCCATACA 58.944 50.000 22.47 0.00 38.57 2.29
3120 4482 2.679837 CTGTGGCACTGTCCATACATTC 59.320 50.000 19.83 0.00 38.57 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.422127 GCCACAGTAAATGCCGTACAAT 59.578 45.455 0.00 0.00 0.00 2.71
1 2 1.807742 GCCACAGTAAATGCCGTACAA 59.192 47.619 0.00 0.00 0.00 2.41
4 5 1.270893 TGTGCCACAGTAAATGCCGTA 60.271 47.619 0.00 0.00 0.00 4.02
5 6 0.536233 TGTGCCACAGTAAATGCCGT 60.536 50.000 0.00 0.00 0.00 5.68
7 8 0.958091 TGTGTGCCACAGTAAATGCC 59.042 50.000 0.00 0.00 39.62 4.40
19 1134 1.135575 GCATTAGCAGTTCTGTGTGCC 60.136 52.381 1.78 0.00 40.81 5.01
39 1154 1.135859 GCTGAATTCACAGAAGCACGG 60.136 52.381 3.38 0.00 39.94 4.94
59 1174 1.772182 GATCGAACCAGCCATAGACG 58.228 55.000 0.00 0.00 0.00 4.18
207 1343 7.504238 TGTTACAGGTCAAATGGATTACACTTT 59.496 33.333 0.00 0.00 0.00 2.66
240 1378 7.168637 GCTTGCACTTAATTTGTATCATCCATG 59.831 37.037 0.00 0.00 0.00 3.66
241 1379 7.069085 AGCTTGCACTTAATTTGTATCATCCAT 59.931 33.333 0.00 0.00 0.00 3.41
323 1461 2.247635 AGTAGTTAGGCCATCCTCTCCA 59.752 50.000 5.01 0.00 43.06 3.86
328 1466 7.873699 ACATAAATAGTAGTTAGGCCATCCT 57.126 36.000 5.01 0.00 46.57 3.24
347 1485 1.295357 CGCACGCACAGGGAACATAA 61.295 55.000 0.00 0.00 0.00 1.90
349 1487 3.049674 CGCACGCACAGGGAACAT 61.050 61.111 0.00 0.00 0.00 2.71
362 1500 2.430921 CGTCTCCAGTGACCGCAC 60.431 66.667 0.00 0.00 45.49 5.34
363 1501 3.680786 CCGTCTCCAGTGACCGCA 61.681 66.667 0.00 0.00 33.70 5.69
364 1502 4.436998 CCCGTCTCCAGTGACCGC 62.437 72.222 0.00 0.00 33.70 5.68
365 1503 1.812686 TTTCCCGTCTCCAGTGACCG 61.813 60.000 0.00 0.00 33.70 4.79
366 1504 0.320508 GTTTCCCGTCTCCAGTGACC 60.321 60.000 0.00 0.00 33.70 4.02
367 1505 0.320508 GGTTTCCCGTCTCCAGTGAC 60.321 60.000 0.00 0.00 0.00 3.67
368 1506 0.761323 TGGTTTCCCGTCTCCAGTGA 60.761 55.000 0.00 0.00 0.00 3.41
369 1507 0.602905 GTGGTTTCCCGTCTCCAGTG 60.603 60.000 0.00 0.00 0.00 3.66
370 1508 0.763223 AGTGGTTTCCCGTCTCCAGT 60.763 55.000 0.00 0.00 0.00 4.00
371 1509 0.320771 CAGTGGTTTCCCGTCTCCAG 60.321 60.000 0.00 0.00 0.00 3.86
372 1510 1.752198 CAGTGGTTTCCCGTCTCCA 59.248 57.895 0.00 0.00 0.00 3.86
373 1511 1.671379 GCAGTGGTTTCCCGTCTCC 60.671 63.158 0.00 0.00 0.00 3.71
374 1512 0.670854 GAGCAGTGGTTTCCCGTCTC 60.671 60.000 0.00 0.00 0.00 3.36
375 1513 1.371558 GAGCAGTGGTTTCCCGTCT 59.628 57.895 0.00 0.00 0.00 4.18
376 1514 2.027625 CGAGCAGTGGTTTCCCGTC 61.028 63.158 0.00 0.00 0.00 4.79
377 1515 2.030562 CGAGCAGTGGTTTCCCGT 59.969 61.111 0.00 0.00 0.00 5.28
378 1516 3.423154 GCGAGCAGTGGTTTCCCG 61.423 66.667 0.00 0.00 0.00 5.14
379 1517 2.032681 AGCGAGCAGTGGTTTCCC 59.967 61.111 0.00 0.00 0.00 3.97
380 1518 0.884704 TTGAGCGAGCAGTGGTTTCC 60.885 55.000 0.00 0.00 0.00 3.13
381 1519 1.135859 CATTGAGCGAGCAGTGGTTTC 60.136 52.381 0.00 0.00 0.00 2.78
382 1520 0.877071 CATTGAGCGAGCAGTGGTTT 59.123 50.000 0.00 0.00 0.00 3.27
383 1521 1.580845 GCATTGAGCGAGCAGTGGTT 61.581 55.000 0.00 0.00 0.00 3.67
384 1522 2.037136 GCATTGAGCGAGCAGTGGT 61.037 57.895 0.00 0.00 0.00 4.16
385 1523 2.789917 GCATTGAGCGAGCAGTGG 59.210 61.111 0.00 0.00 0.00 4.00
403 1541 3.499737 GATGAAGCACGGCACCGG 61.500 66.667 14.51 0.00 44.69 5.28
404 1542 2.434884 AGATGAAGCACGGCACCG 60.435 61.111 7.71 7.71 46.03 4.94
405 1543 2.401766 CCAGATGAAGCACGGCACC 61.402 63.158 0.00 0.00 0.00 5.01
406 1544 3.044059 GCCAGATGAAGCACGGCAC 62.044 63.158 0.00 0.00 42.50 5.01
407 1545 2.747460 GCCAGATGAAGCACGGCA 60.747 61.111 0.00 0.00 42.50 5.69
408 1546 2.437359 AGCCAGATGAAGCACGGC 60.437 61.111 0.00 0.00 43.31 5.68
409 1547 2.110967 CCAGCCAGATGAAGCACGG 61.111 63.158 0.00 0.00 0.00 4.94
410 1548 0.463295 ATCCAGCCAGATGAAGCACG 60.463 55.000 0.00 0.00 0.00 5.34
411 1549 1.022735 CATCCAGCCAGATGAAGCAC 58.977 55.000 7.63 0.00 45.43 4.40
412 1550 0.622136 ACATCCAGCCAGATGAAGCA 59.378 50.000 17.89 0.00 45.43 3.91
413 1551 1.307097 GACATCCAGCCAGATGAAGC 58.693 55.000 17.89 5.66 45.43 3.86
414 1552 1.579698 CGACATCCAGCCAGATGAAG 58.420 55.000 17.89 8.81 45.43 3.02
415 1553 0.462581 GCGACATCCAGCCAGATGAA 60.463 55.000 17.89 0.00 45.43 2.57
416 1554 1.144716 GCGACATCCAGCCAGATGA 59.855 57.895 17.89 0.00 45.43 2.92
418 1556 0.390860 GTAGCGACATCCAGCCAGAT 59.609 55.000 0.00 0.00 0.00 2.90
419 1557 1.676678 GGTAGCGACATCCAGCCAGA 61.677 60.000 0.00 0.00 0.00 3.86
420 1558 1.227380 GGTAGCGACATCCAGCCAG 60.227 63.158 0.00 0.00 0.00 4.85
421 1559 1.685765 AGGTAGCGACATCCAGCCA 60.686 57.895 0.00 0.00 0.00 4.75
422 1560 1.227380 CAGGTAGCGACATCCAGCC 60.227 63.158 0.00 0.00 0.00 4.85
423 1561 1.884926 GCAGGTAGCGACATCCAGC 60.885 63.158 0.00 0.00 0.00 4.85
424 1562 4.427394 GCAGGTAGCGACATCCAG 57.573 61.111 0.00 0.00 0.00 3.86
433 1571 1.815421 CGTGGTCATGGCAGGTAGC 60.815 63.158 0.00 0.00 44.65 3.58
434 1572 1.153369 CCGTGGTCATGGCAGGTAG 60.153 63.158 0.00 0.00 0.00 3.18
435 1573 1.916273 ACCGTGGTCATGGCAGGTA 60.916 57.895 9.21 0.00 41.20 3.08
436 1574 3.249189 ACCGTGGTCATGGCAGGT 61.249 61.111 8.99 2.26 41.20 4.00
437 1575 2.747460 CACCGTGGTCATGGCAGG 60.747 66.667 8.99 1.54 41.20 4.85
438 1576 2.747460 CCACCGTGGTCATGGCAG 60.747 66.667 9.64 2.82 41.20 4.85
441 1579 3.976701 GAGGCCACCGTGGTCATGG 62.977 68.421 23.98 7.61 46.77 3.66
442 1580 2.436646 GAGGCCACCGTGGTCATG 60.437 66.667 23.98 0.00 46.77 3.07
443 1581 4.082523 CGAGGCCACCGTGGTCAT 62.083 66.667 23.98 11.45 46.77 3.06
445 1583 4.736896 GACGAGGCCACCGTGGTC 62.737 72.222 24.62 14.74 44.07 4.02
450 1588 4.530857 GATGGGACGAGGCCACCG 62.531 72.222 5.01 11.15 0.00 4.94
451 1589 3.399181 TGATGGGACGAGGCCACC 61.399 66.667 5.01 2.26 0.00 4.61
452 1590 1.327690 TAGTGATGGGACGAGGCCAC 61.328 60.000 5.01 0.00 0.00 5.01
453 1591 0.398522 ATAGTGATGGGACGAGGCCA 60.399 55.000 5.01 0.00 0.00 5.36
454 1592 0.034059 CATAGTGATGGGACGAGGCC 59.966 60.000 0.00 0.00 0.00 5.19
455 1593 3.595691 CATAGTGATGGGACGAGGC 57.404 57.895 0.00 0.00 0.00 4.70
464 1602 2.611473 GGATCCGCTGTCCATAGTGATG 60.611 54.545 0.00 0.00 35.76 3.07
465 1603 1.620819 GGATCCGCTGTCCATAGTGAT 59.379 52.381 0.00 0.00 35.76 3.06
466 1604 1.040646 GGATCCGCTGTCCATAGTGA 58.959 55.000 0.00 0.00 35.76 3.41
467 1605 0.319040 CGGATCCGCTGTCCATAGTG 60.319 60.000 23.37 0.00 35.41 2.74
468 1606 0.467474 TCGGATCCGCTGTCCATAGT 60.467 55.000 29.62 0.00 39.59 2.12
469 1607 0.673985 TTCGGATCCGCTGTCCATAG 59.326 55.000 29.62 0.00 39.59 2.23
470 1608 1.068588 CTTTCGGATCCGCTGTCCATA 59.931 52.381 29.62 6.54 39.59 2.74
471 1609 0.179073 CTTTCGGATCCGCTGTCCAT 60.179 55.000 29.62 0.00 39.59 3.41
472 1610 1.218047 CTTTCGGATCCGCTGTCCA 59.782 57.895 29.62 8.20 39.59 4.02
473 1611 1.084370 CACTTTCGGATCCGCTGTCC 61.084 60.000 29.62 0.00 39.59 4.02
474 1612 1.696832 GCACTTTCGGATCCGCTGTC 61.697 60.000 29.62 15.29 39.59 3.51
475 1613 1.741770 GCACTTTCGGATCCGCTGT 60.742 57.895 29.62 22.09 39.59 4.40
476 1614 1.699656 CTGCACTTTCGGATCCGCTG 61.700 60.000 29.62 21.47 39.59 5.18
477 1615 1.448540 CTGCACTTTCGGATCCGCT 60.449 57.895 29.62 8.41 39.59 5.52
478 1616 2.464459 CCTGCACTTTCGGATCCGC 61.464 63.158 29.62 14.49 39.59 5.54
479 1617 0.179073 ATCCTGCACTTTCGGATCCG 60.179 55.000 28.62 28.62 32.17 4.18
480 1618 2.910688 TATCCTGCACTTTCGGATCC 57.089 50.000 7.65 0.00 38.45 3.36
481 1619 4.023707 CCAAATATCCTGCACTTTCGGATC 60.024 45.833 7.65 0.00 38.45 3.36
482 1620 3.885297 CCAAATATCCTGCACTTTCGGAT 59.115 43.478 9.21 9.21 40.48 4.18
483 1621 3.278574 CCAAATATCCTGCACTTTCGGA 58.721 45.455 0.00 0.00 0.00 4.55
484 1622 3.016736 ACCAAATATCCTGCACTTTCGG 58.983 45.455 0.00 0.00 0.00 4.30
485 1623 3.941483 AGACCAAATATCCTGCACTTTCG 59.059 43.478 0.00 0.00 0.00 3.46
486 1624 4.943705 TGAGACCAAATATCCTGCACTTTC 59.056 41.667 0.00 0.00 0.00 2.62
487 1625 4.922206 TGAGACCAAATATCCTGCACTTT 58.078 39.130 0.00 0.00 0.00 2.66
488 1626 4.574674 TGAGACCAAATATCCTGCACTT 57.425 40.909 0.00 0.00 0.00 3.16
489 1627 4.521146 CTTGAGACCAAATATCCTGCACT 58.479 43.478 0.00 0.00 0.00 4.40
490 1628 3.065925 GCTTGAGACCAAATATCCTGCAC 59.934 47.826 0.00 0.00 0.00 4.57
491 1629 3.054139 AGCTTGAGACCAAATATCCTGCA 60.054 43.478 0.00 0.00 0.00 4.41
492 1630 3.549794 AGCTTGAGACCAAATATCCTGC 58.450 45.455 0.00 0.00 0.00 4.85
493 1631 8.153550 ACTAATAGCTTGAGACCAAATATCCTG 58.846 37.037 0.00 0.00 0.00 3.86
494 1632 8.268878 ACTAATAGCTTGAGACCAAATATCCT 57.731 34.615 0.00 0.00 0.00 3.24
495 1633 9.998106 TTACTAATAGCTTGAGACCAAATATCC 57.002 33.333 0.00 0.00 0.00 2.59
498 1636 9.998106 GGATTACTAATAGCTTGAGACCAAATA 57.002 33.333 0.00 0.00 0.00 1.40
499 1637 8.718656 AGGATTACTAATAGCTTGAGACCAAAT 58.281 33.333 0.00 0.00 0.00 2.32
500 1638 7.987458 CAGGATTACTAATAGCTTGAGACCAAA 59.013 37.037 0.00 0.00 0.00 3.28
501 1639 7.419057 CCAGGATTACTAATAGCTTGAGACCAA 60.419 40.741 0.00 0.00 0.00 3.67
502 1640 6.042093 CCAGGATTACTAATAGCTTGAGACCA 59.958 42.308 0.00 0.00 0.00 4.02
503 1641 6.459923 CCAGGATTACTAATAGCTTGAGACC 58.540 44.000 0.00 0.00 0.00 3.85
523 1661 3.807538 GATGCACGTGCTGCCAGG 61.808 66.667 37.59 0.95 46.51 4.45
549 1687 3.139077 ACCGAGAATGAGAAGCGTTTTT 58.861 40.909 0.00 0.00 0.00 1.94
552 1690 2.457366 AACCGAGAATGAGAAGCGTT 57.543 45.000 0.00 0.00 0.00 4.84
553 1691 2.069273 CAAACCGAGAATGAGAAGCGT 58.931 47.619 0.00 0.00 0.00 5.07
559 1697 2.350522 CTCCCACAAACCGAGAATGAG 58.649 52.381 0.00 0.00 0.00 2.90
569 1707 3.673599 GCCAGAGCTCCCACAAAC 58.326 61.111 10.93 0.00 35.50 2.93
592 1730 7.201582 GCATGTCATTGAAAATTCTCCAATTCC 60.202 37.037 0.00 0.00 30.37 3.01
593 1731 7.332430 TGCATGTCATTGAAAATTCTCCAATTC 59.668 33.333 0.00 0.00 30.37 2.17
597 1735 5.716094 CTGCATGTCATTGAAAATTCTCCA 58.284 37.500 0.00 0.00 0.00 3.86
602 1740 2.669434 GCGCTGCATGTCATTGAAAATT 59.331 40.909 0.00 0.00 0.00 1.82
622 1760 1.667467 GGATAATCTGAGTCGCCGAGC 60.667 57.143 0.00 0.00 0.00 5.03
627 1765 1.342819 AGCCAGGATAATCTGAGTCGC 59.657 52.381 0.00 0.00 36.93 5.19
636 1774 6.725364 CCAATCACCTAATAGCCAGGATAAT 58.275 40.000 0.00 0.00 36.61 1.28
647 1785 3.969976 AGAGCTCAGCCAATCACCTAATA 59.030 43.478 17.77 0.00 0.00 0.98
681 1819 0.977627 TGATCGACATCAGGCCCACT 60.978 55.000 0.00 0.00 33.80 4.00
694 1832 0.103026 CGCAACTCCCAGATGATCGA 59.897 55.000 0.00 0.00 0.00 3.59
713 1851 1.085091 CAGAGGCAGTCATGTTCAGC 58.915 55.000 0.00 0.00 0.00 4.26
727 1865 0.695347 AAAAGGACAGAGCCCAGAGG 59.305 55.000 0.00 0.00 0.00 3.69
768 1906 7.622893 AGCAAAAGGATAAAAGATCAGAGTC 57.377 36.000 0.00 0.00 0.00 3.36
769 1907 9.336171 GATAGCAAAAGGATAAAAGATCAGAGT 57.664 33.333 0.00 0.00 0.00 3.24
795 1933 2.030946 GCTGGCTTTGACGTATTAGCAG 59.969 50.000 14.69 11.36 35.36 4.24
824 1962 6.627508 GCCTGCAAGATTTTTCTGAATGATCT 60.628 38.462 9.11 9.11 34.07 2.75
834 1972 4.460731 AGAGTAAGGCCTGCAAGATTTTTC 59.539 41.667 5.69 0.00 34.07 2.29
893 2034 0.846693 AGTTTGTCAGGTTGGAGGCT 59.153 50.000 0.00 0.00 0.00 4.58
899 2040 3.189287 GCTGTGGATAGTTTGTCAGGTTG 59.811 47.826 0.00 0.00 0.00 3.77
904 2045 6.296026 AGTTTTAGCTGTGGATAGTTTGTCA 58.704 36.000 0.00 0.00 0.00 3.58
943 2085 8.745590 ACCTGTACTGTACAAGAAACAAAAATT 58.254 29.630 20.30 0.00 38.38 1.82
944 2086 8.288689 ACCTGTACTGTACAAGAAACAAAAAT 57.711 30.769 20.30 0.00 38.38 1.82
949 2091 4.652421 AGGACCTGTACTGTACAAGAAACA 59.348 41.667 20.30 0.88 38.38 2.83
1057 2201 0.767375 ACTGTCTGTTCTGCCATGGT 59.233 50.000 14.67 0.00 0.00 3.55
1086 2230 2.662596 CCGGTTACAGCAGAGGCA 59.337 61.111 0.00 0.00 44.61 4.75
1128 2272 1.414181 CCGAACATCTGTATCAGCCCT 59.586 52.381 0.00 0.00 0.00 5.19
1167 2311 4.012811 AGCCGCTGCAGCTTCTCA 62.013 61.111 34.22 0.00 37.24 3.27
1235 2379 2.083774 GCCACAAATTCTCGATGGTGA 58.916 47.619 1.26 0.00 32.71 4.02
1258 2402 2.395690 CTTGTCGCGCCATCGAAC 59.604 61.111 0.00 0.00 40.43 3.95
1326 2470 1.517242 CTTCAGCGTCTTCTGCCTTT 58.483 50.000 0.00 0.00 34.19 3.11
1357 2501 0.467844 TGCTGCTGGTTGGTGTCAAT 60.468 50.000 0.00 0.00 35.10 2.57
1473 2617 0.466543 ACAGTACTTGGGTTGCGTCA 59.533 50.000 0.00 0.00 0.00 4.35
1485 2629 6.929049 TGTCTTCATCATTCGAAAACAGTACT 59.071 34.615 0.00 0.00 0.00 2.73
1488 2632 6.348786 CCATGTCTTCATCATTCGAAAACAGT 60.349 38.462 0.00 0.00 31.15 3.55
1499 2643 5.258841 TCAGCTTTTCCATGTCTTCATCAT 58.741 37.500 0.00 0.00 31.15 2.45
1503 2647 2.816087 GCTCAGCTTTTCCATGTCTTCA 59.184 45.455 0.00 0.00 0.00 3.02
1523 2667 4.829064 TCTAACATGTCCAGTGTTTTGC 57.171 40.909 0.00 0.00 40.13 3.68
1526 2670 4.578928 GGTGTTCTAACATGTCCAGTGTTT 59.421 41.667 0.00 0.00 41.59 2.83
1527 2671 4.134563 GGTGTTCTAACATGTCCAGTGTT 58.865 43.478 0.00 0.00 41.59 3.32
1545 2689 1.821753 CTGATGTCTTCGGAGAGGTGT 59.178 52.381 0.00 0.00 38.43 4.16
1556 2700 8.538701 ACAATCTTATGAACTCTCTGATGTCTT 58.461 33.333 0.00 0.00 0.00 3.01
1607 2751 8.240682 CCATACTCTCGGTAGATTTTAGATCTG 58.759 40.741 5.18 0.00 33.51 2.90
1616 2760 5.310451 GAGTCTCCATACTCTCGGTAGATT 58.690 45.833 0.00 0.00 42.21 2.40
1636 2780 3.307059 GGTCTATGCTCTGTTGTTGGAGT 60.307 47.826 0.00 0.00 32.67 3.85
1733 2880 0.453282 CACGCACGGAGCTGAAATTG 60.453 55.000 0.00 0.00 42.61 2.32
1760 2907 8.408043 AAGATTGATCAATTTGTTCACTACCA 57.592 30.769 21.57 0.00 0.00 3.25
1799 2946 2.642311 TGTTCCTTCTGGATAACTGCCA 59.358 45.455 0.00 0.00 42.81 4.92
1805 2952 5.560722 TTCACACTGTTCCTTCTGGATAA 57.439 39.130 0.00 0.00 42.81 1.75
1884 3031 0.176680 CAAGGTCGTGGCTATCTGCT 59.823 55.000 0.00 0.00 42.39 4.24
1920 3067 0.181114 GGATGTCAGCCCAGTATGCA 59.819 55.000 0.00 0.00 31.97 3.96
1986 3133 1.234821 CCCTTAGTGTTTTGCGAGCA 58.765 50.000 0.00 0.00 0.00 4.26
2001 3148 1.682087 GGCTCGTTATCTTTGGCCCTT 60.682 52.381 0.00 0.00 34.19 3.95
2004 3151 1.459450 TTGGCTCGTTATCTTTGGCC 58.541 50.000 0.00 0.00 39.93 5.36
2167 3314 5.396772 CCTGTCTTATTATTCAGGTGAGCCA 60.397 44.000 0.00 0.00 41.51 4.75
2272 3419 3.307762 GCTCAACCTGGATTACTCCTGTT 60.308 47.826 0.00 1.88 42.59 3.16
2273 3420 2.237392 GCTCAACCTGGATTACTCCTGT 59.763 50.000 0.00 0.00 42.59 4.00
2288 3435 3.123621 CGGTTACACAATCAGAGCTCAAC 59.876 47.826 17.77 7.81 0.00 3.18
2309 3456 8.176814 ACTGAAAATTGTTAATTGCATCATCG 57.823 30.769 0.00 0.00 0.00 3.84
2324 3471 8.567948 TGAGCTAAAAGAACCTACTGAAAATTG 58.432 33.333 0.00 0.00 0.00 2.32
2325 3472 8.691661 TGAGCTAAAAGAACCTACTGAAAATT 57.308 30.769 0.00 0.00 0.00 1.82
2327 3474 6.204882 GCTGAGCTAAAAGAACCTACTGAAAA 59.795 38.462 0.00 0.00 0.00 2.29
2331 3478 3.935828 GGCTGAGCTAAAAGAACCTACTG 59.064 47.826 3.72 0.00 0.00 2.74
2340 3487 4.271291 GGAACTTATCGGCTGAGCTAAAAG 59.729 45.833 3.72 6.15 0.00 2.27
2360 3508 2.027561 CGTCCCTATGTGACCAAAGGAA 60.028 50.000 0.00 0.00 0.00 3.36
2367 3515 0.036765 TGCAACGTCCCTATGTGACC 60.037 55.000 0.00 0.00 0.00 4.02
2401 3550 4.352893 AGCTTCTTTAGTTCCCCAACCTTA 59.647 41.667 0.00 0.00 32.22 2.69
2408 3557 3.263261 CTTCGAGCTTCTTTAGTTCCCC 58.737 50.000 0.00 0.00 30.90 4.81
2411 3560 4.308265 ACACCTTCGAGCTTCTTTAGTTC 58.692 43.478 0.00 0.00 0.00 3.01
2415 3564 3.070446 TCCAACACCTTCGAGCTTCTTTA 59.930 43.478 0.00 0.00 0.00 1.85
2416 3565 2.158813 TCCAACACCTTCGAGCTTCTTT 60.159 45.455 0.00 0.00 0.00 2.52
2425 3574 1.569493 CGCAGTTCCAACACCTTCG 59.431 57.895 0.00 0.00 0.00 3.79
2427 3576 0.110486 ATCCGCAGTTCCAACACCTT 59.890 50.000 0.00 0.00 0.00 3.50
2428 3577 0.981183 TATCCGCAGTTCCAACACCT 59.019 50.000 0.00 0.00 0.00 4.00
2429 3578 2.038387 ATATCCGCAGTTCCAACACC 57.962 50.000 0.00 0.00 0.00 4.16
2430 3579 4.377021 TGATATATCCGCAGTTCCAACAC 58.623 43.478 10.25 0.00 0.00 3.32
2431 3580 4.343814 TCTGATATATCCGCAGTTCCAACA 59.656 41.667 10.25 0.00 0.00 3.33
2432 3581 4.883083 TCTGATATATCCGCAGTTCCAAC 58.117 43.478 10.25 0.00 0.00 3.77
2433 3582 5.545063 TTCTGATATATCCGCAGTTCCAA 57.455 39.130 10.25 0.00 0.00 3.53
2434 3583 5.745312 ATTCTGATATATCCGCAGTTCCA 57.255 39.130 10.25 0.00 0.00 3.53
2435 3584 7.324178 ACTAATTCTGATATATCCGCAGTTCC 58.676 38.462 10.25 0.00 0.00 3.62
2436 3585 9.509855 CTACTAATTCTGATATATCCGCAGTTC 57.490 37.037 10.25 0.00 0.00 3.01
2437 3586 9.244292 TCTACTAATTCTGATATATCCGCAGTT 57.756 33.333 10.25 2.39 0.00 3.16
2438 3587 8.809468 TCTACTAATTCTGATATATCCGCAGT 57.191 34.615 10.25 7.30 0.00 4.40
2439 3588 7.860373 GCTCTACTAATTCTGATATATCCGCAG 59.140 40.741 10.25 2.23 0.00 5.18
2440 3589 7.201830 GGCTCTACTAATTCTGATATATCCGCA 60.202 40.741 10.25 0.00 0.00 5.69
2441 3590 7.142680 GGCTCTACTAATTCTGATATATCCGC 58.857 42.308 10.25 0.00 0.00 5.54
2442 3591 8.226819 TGGCTCTACTAATTCTGATATATCCG 57.773 38.462 10.25 4.06 0.00 4.18
2453 3602 9.771534 ATCTTGACTTTATGGCTCTACTAATTC 57.228 33.333 0.00 0.00 0.00 2.17
2458 3607 7.430760 AAGATCTTGACTTTATGGCTCTACT 57.569 36.000 7.30 0.00 0.00 2.57
2459 3608 7.550906 ACAAAGATCTTGACTTTATGGCTCTAC 59.449 37.037 9.17 0.00 36.09 2.59
2460 3609 7.550551 CACAAAGATCTTGACTTTATGGCTCTA 59.449 37.037 9.17 0.00 36.09 2.43
2461 3610 6.373774 CACAAAGATCTTGACTTTATGGCTCT 59.626 38.462 9.17 0.00 36.09 4.09
2462 3611 6.404074 CCACAAAGATCTTGACTTTATGGCTC 60.404 42.308 9.17 0.00 42.30 4.70
2463 3612 5.416952 CCACAAAGATCTTGACTTTATGGCT 59.583 40.000 9.17 0.00 42.30 4.75
2464 3613 5.644644 CCACAAAGATCTTGACTTTATGGC 58.355 41.667 9.17 0.00 42.30 4.40
2466 3615 7.330946 TCGTACCACAAAGATCTTGACTTTATG 59.669 37.037 9.17 4.12 36.09 1.90
2467 3616 7.383687 TCGTACCACAAAGATCTTGACTTTAT 58.616 34.615 9.17 0.00 36.09 1.40
2468 3617 6.751157 TCGTACCACAAAGATCTTGACTTTA 58.249 36.000 9.17 0.00 36.09 1.85
2469 3618 5.607477 TCGTACCACAAAGATCTTGACTTT 58.393 37.500 9.17 0.00 37.96 2.66
2470 3619 5.209818 TCGTACCACAAAGATCTTGACTT 57.790 39.130 9.17 0.00 0.00 3.01
2471 3620 4.810790 CTCGTACCACAAAGATCTTGACT 58.189 43.478 9.17 0.00 0.00 3.41
2472 3621 3.368236 GCTCGTACCACAAAGATCTTGAC 59.632 47.826 9.17 0.46 0.00 3.18
2473 3622 3.585862 GCTCGTACCACAAAGATCTTGA 58.414 45.455 9.17 0.00 0.00 3.02
2474 3623 2.345641 CGCTCGTACCACAAAGATCTTG 59.654 50.000 9.17 6.08 0.00 3.02
2475 3624 2.607187 CGCTCGTACCACAAAGATCTT 58.393 47.619 0.88 0.88 0.00 2.40
2495 3644 2.225041 ACCAAGGTTTAAGGCTCCTTCC 60.225 50.000 4.14 0.80 39.22 3.46
2504 3653 5.774498 AAAGAGCAGAACCAAGGTTTAAG 57.226 39.130 5.87 1.00 38.60 1.85
2540 3689 0.806868 CAGCACTGTAGCACCCATTG 59.193 55.000 5.32 0.00 36.85 2.82
2542 3691 1.200760 TCCAGCACTGTAGCACCCAT 61.201 55.000 0.00 0.00 36.85 4.00
2543 3692 1.414866 TTCCAGCACTGTAGCACCCA 61.415 55.000 0.00 0.00 36.85 4.51
2544 3693 0.250727 TTTCCAGCACTGTAGCACCC 60.251 55.000 0.00 0.00 36.85 4.61
2545 3694 1.160137 CTTTCCAGCACTGTAGCACC 58.840 55.000 0.00 0.00 36.85 5.01
2546 3695 1.801178 GTCTTTCCAGCACTGTAGCAC 59.199 52.381 0.00 0.00 36.85 4.40
2547 3696 1.416030 TGTCTTTCCAGCACTGTAGCA 59.584 47.619 0.00 0.00 36.85 3.49
2553 3702 2.664402 ATGGTTGTCTTTCCAGCACT 57.336 45.000 0.00 0.00 37.14 4.40
2554 3703 4.702131 AGAATATGGTTGTCTTTCCAGCAC 59.298 41.667 0.00 0.00 37.14 4.40
2572 3721 5.425217 TCAGAACCACCTGAATGCTAGAATA 59.575 40.000 0.00 0.00 39.96 1.75
2576 3725 3.265791 GTCAGAACCACCTGAATGCTAG 58.734 50.000 0.00 0.00 43.94 3.42
2578 3727 1.271597 GGTCAGAACCACCTGAATGCT 60.272 52.381 0.00 0.00 45.68 3.79
2612 3970 7.930325 TCAAAGTGGATCATAGAAGCTATTCAG 59.070 37.037 0.00 0.00 37.94 3.02
2614 3972 8.719648 CATCAAAGTGGATCATAGAAGCTATTC 58.280 37.037 0.00 0.00 35.52 1.75
2615 3973 8.435187 TCATCAAAGTGGATCATAGAAGCTATT 58.565 33.333 0.00 0.00 0.00 1.73
2616 3974 7.971201 TCATCAAAGTGGATCATAGAAGCTAT 58.029 34.615 0.00 0.00 0.00 2.97
2618 3976 6.244552 TCATCAAAGTGGATCATAGAAGCT 57.755 37.500 0.00 0.00 0.00 3.74
2619 3977 6.932356 TTCATCAAAGTGGATCATAGAAGC 57.068 37.500 0.00 0.00 0.00 3.86
2626 3984 8.192774 GCAAAAGATATTCATCAAAGTGGATCA 58.807 33.333 0.00 0.00 33.21 2.92
2644 4002 2.871096 TGGTTCTACCGGCAAAAGAT 57.129 45.000 0.00 0.00 42.58 2.40
2670 4028 2.371658 ATCAGCATTTAAGAGCCCCC 57.628 50.000 0.00 0.00 0.00 5.40
2672 4030 5.009110 GGAGTAAATCAGCATTTAAGAGCCC 59.991 44.000 0.00 0.00 36.43 5.19
2673 4031 5.825151 AGGAGTAAATCAGCATTTAAGAGCC 59.175 40.000 0.00 0.00 36.43 4.70
2674 4032 6.934048 AGGAGTAAATCAGCATTTAAGAGC 57.066 37.500 0.00 0.00 36.43 4.09
2683 4044 4.081087 GTCCAAGGTAGGAGTAAATCAGCA 60.081 45.833 0.00 0.00 38.64 4.41
2684 4045 4.443621 GTCCAAGGTAGGAGTAAATCAGC 58.556 47.826 0.00 0.00 38.64 4.26
2686 4047 3.449737 CGGTCCAAGGTAGGAGTAAATCA 59.550 47.826 0.00 0.00 38.64 2.57
2713 4074 4.744136 TCTTAGTGTCTATCGCCATACG 57.256 45.455 0.00 0.00 45.62 3.06
2727 4088 8.296713 GGAGATAACTTCTAGCTGATCTTAGTG 58.703 40.741 0.00 0.00 33.74 2.74
2742 4103 7.614192 TGTCAAATAAAAGGGGGAGATAACTTC 59.386 37.037 0.00 0.00 0.00 3.01
2745 4106 7.255139 CGATGTCAAATAAAAGGGGGAGATAAC 60.255 40.741 0.00 0.00 0.00 1.89
2755 4116 7.744715 GTGACTACAACGATGTCAAATAAAAGG 59.255 37.037 0.00 0.00 41.52 3.11
2759 4120 7.439955 ACAAGTGACTACAACGATGTCAAATAA 59.560 33.333 0.00 0.00 41.52 1.40
2766 4127 4.873827 ACAAACAAGTGACTACAACGATGT 59.126 37.500 3.12 3.12 43.74 3.06
2778 4139 3.392947 TGGGATGGAGTACAAACAAGTGA 59.607 43.478 0.00 0.00 0.00 3.41
2779 4140 3.750371 TGGGATGGAGTACAAACAAGTG 58.250 45.455 0.00 0.00 0.00 3.16
2795 4156 1.004745 ACAAAATGGTCGAGCTGGGAT 59.995 47.619 16.64 0.00 0.00 3.85
2797 4158 1.247567 AACAAAATGGTCGAGCTGGG 58.752 50.000 16.64 3.74 0.00 4.45
2806 4167 3.472283 TGAGCATGCAAACAAAATGGT 57.528 38.095 21.98 0.00 34.88 3.55
2808 4169 5.387279 GGAAATGAGCATGCAAACAAAATG 58.613 37.500 21.98 0.00 0.00 2.32
2809 4170 4.152759 CGGAAATGAGCATGCAAACAAAAT 59.847 37.500 21.98 7.47 0.00 1.82
2817 4178 1.026584 CCATCGGAAATGAGCATGCA 58.973 50.000 21.98 0.00 0.00 3.96
2818 4179 0.318445 GCCATCGGAAATGAGCATGC 60.318 55.000 10.51 10.51 0.00 4.06
2852 4213 6.459573 GGCCATCGTCTTGCATTAAAGATTTA 60.460 38.462 0.00 0.00 38.41 1.40
2853 4214 5.343249 GCCATCGTCTTGCATTAAAGATTT 58.657 37.500 0.00 0.00 38.41 2.17
2862 4223 0.745845 GAGTGGCCATCGTCTTGCAT 60.746 55.000 9.72 0.00 0.00 3.96
2873 4234 1.341482 TGGACTTGTTTTGAGTGGCCA 60.341 47.619 0.00 0.00 0.00 5.36
2874 4235 1.398692 TGGACTTGTTTTGAGTGGCC 58.601 50.000 0.00 0.00 0.00 5.36
2908 4270 1.680207 CGATGACTGGAGCTGATCAGA 59.320 52.381 27.04 4.19 35.20 3.27
2918 4280 2.349590 CATTGCTGAACGATGACTGGA 58.650 47.619 0.00 0.00 42.12 3.86
2923 4285 1.089112 CTGCCATTGCTGAACGATGA 58.911 50.000 0.00 0.00 42.12 2.92
2935 4297 0.255033 TGAGATGCTCAGCTGCCATT 59.745 50.000 9.47 5.44 35.39 3.16
2947 4309 6.753180 TCATATAACTTCTCCAGTGAGATGC 58.247 40.000 0.00 0.00 46.75 3.91
2960 4322 4.689612 TGGGGACAGCTCATATAACTTC 57.310 45.455 0.00 0.00 35.01 3.01
2987 4349 0.445436 GCACCAAGATGAACTCTGCG 59.555 55.000 0.00 0.00 33.29 5.18
2988 4350 1.467734 CAGCACCAAGATGAACTCTGC 59.532 52.381 0.00 0.00 35.00 4.26
3003 4365 0.035056 AATACCTCCACCTGCAGCAC 60.035 55.000 8.66 0.00 0.00 4.40
3040 4402 0.391597 TCTCGTTCTTTCGGCAGGTT 59.608 50.000 0.00 0.00 0.00 3.50
3048 4410 3.549299 TGTAGACCGTCTCGTTCTTTC 57.451 47.619 3.74 0.00 0.00 2.62
3060 4422 5.106118 CCATACTAGATGGTGATGTAGACCG 60.106 48.000 0.00 0.00 36.12 4.79
3094 4456 1.371183 GGACAGTGCCACAGTGCTA 59.629 57.895 4.65 0.00 38.26 3.49
3096 4458 0.321564 TATGGACAGTGCCACAGTGC 60.322 55.000 4.93 4.93 41.56 4.40
3097 4459 1.270785 TGTATGGACAGTGCCACAGTG 60.271 52.381 0.00 0.21 41.56 3.66
3098 4460 1.055849 TGTATGGACAGTGCCACAGT 58.944 50.000 8.23 0.00 41.56 3.55
3099 4461 2.408271 ATGTATGGACAGTGCCACAG 57.592 50.000 8.23 0.00 41.56 3.66
3100 4462 2.039613 TGAATGTATGGACAGTGCCACA 59.960 45.455 8.23 4.45 41.56 4.17
3101 4463 2.710377 TGAATGTATGGACAGTGCCAC 58.290 47.619 8.23 0.00 41.56 5.01
3102 4464 3.081061 GTTGAATGTATGGACAGTGCCA 58.919 45.455 8.45 8.45 39.50 4.92
3103 4465 3.347216 AGTTGAATGTATGGACAGTGCC 58.653 45.455 0.00 0.00 39.50 5.01
3104 4466 5.156355 CAAAGTTGAATGTATGGACAGTGC 58.844 41.667 0.00 0.00 39.50 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.