Multiple sequence alignment - TraesCS5B01G493100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G493100 chr5B 100.000 6488 0 0 1616 8103 661228177 661234664 0.000000e+00 11982.0
1 TraesCS5B01G493100 chr5B 100.000 1210 0 0 1 1210 661226562 661227771 0.000000e+00 2235.0
2 TraesCS5B01G493100 chr5B 94.000 100 4 2 3636 3735 476007924 476008021 5.070000e-32 150.0
3 TraesCS5B01G493100 chr5B 92.000 75 3 1 5654 5725 479643540 479643614 1.440000e-17 102.0
4 TraesCS5B01G493100 chr5B 91.667 72 6 0 5654 5725 661232286 661232215 5.170000e-17 100.0
5 TraesCS5B01G493100 chr5B 89.610 77 3 3 5654 5726 479643614 479643539 8.660000e-15 93.5
6 TraesCS5B01G493100 chr5A 95.636 3483 117 18 3732 7187 653295969 653299443 0.000000e+00 5557.0
7 TraesCS5B01G493100 chr5A 97.654 1577 31 1 2075 3651 653294401 653295971 0.000000e+00 2702.0
8 TraesCS5B01G493100 chr5A 95.541 471 9 1 1645 2103 653293878 653294348 0.000000e+00 743.0
9 TraesCS5B01G493100 chr5A 91.786 487 21 7 7635 8103 653300267 653300752 0.000000e+00 660.0
10 TraesCS5B01G493100 chr5A 89.827 462 27 8 7192 7637 653299610 653300067 7.050000e-160 575.0
11 TraesCS5B01G493100 chr5A 100.000 29 0 0 2075 2103 653294347 653294375 4.000000e-03 54.7
12 TraesCS5B01G493100 chr5A 100.000 29 0 0 2075 2103 653294374 653294402 4.000000e-03 54.7
13 TraesCS5B01G493100 chr5D 96.802 2064 53 8 5724 7779 526133554 526135612 0.000000e+00 3434.0
14 TraesCS5B01G493100 chr5D 97.638 1990 41 1 1662 3651 526129653 526131636 0.000000e+00 3410.0
15 TraesCS5B01G493100 chr5D 95.361 1940 58 10 3732 5656 526131634 526133556 0.000000e+00 3055.0
16 TraesCS5B01G493100 chr5D 95.810 358 12 3 750 1107 526128844 526129198 7.050000e-160 575.0
17 TraesCS5B01G493100 chr5D 94.949 99 2 3 3637 3734 310766819 310766915 1.410000e-32 152.0
18 TraesCS5B01G493100 chr5D 88.889 72 8 0 5654 5725 483574148 483574219 1.120000e-13 89.8
19 TraesCS5B01G493100 chr5D 86.842 76 8 2 5653 5727 483574220 483574146 5.210000e-12 84.2
20 TraesCS5B01G493100 chr1A 94.626 521 19 3 111 627 273515044 273514529 0.000000e+00 798.0
21 TraesCS5B01G493100 chr1A 95.495 111 4 1 1 110 273515194 273515084 8.360000e-40 176.0
22 TraesCS5B01G493100 chr4A 85.021 474 31 16 164 627 696052231 696051788 5.770000e-121 446.0
23 TraesCS5B01G493100 chr4A 96.739 92 3 0 3650 3741 647219958 647219867 3.920000e-33 154.0
24 TraesCS5B01G493100 chr4A 93.939 99 6 0 3650 3748 598723676 598723578 5.070000e-32 150.0
25 TraesCS5B01G493100 chr4A 94.872 39 2 0 623 661 696051598 696051560 2.440000e-05 62.1
26 TraesCS5B01G493100 chr4D 88.953 344 22 12 165 503 507693235 507692903 2.100000e-110 411.0
27 TraesCS5B01G493100 chr4D 86.585 82 8 2 535 613 507692902 507692821 4.030000e-13 87.9
28 TraesCS5B01G493100 chr4D 95.122 41 2 0 620 660 507692587 507692547 1.890000e-06 65.8
29 TraesCS5B01G493100 chr7B 98.864 88 1 0 3647 3734 100745926 100745839 3.030000e-34 158.0
30 TraesCS5B01G493100 chr7B 97.802 91 2 0 3646 3736 104073375 104073285 3.030000e-34 158.0
31 TraesCS5B01G493100 chr1D 96.774 93 3 0 3650 3742 9228657 9228749 1.090000e-33 156.0
32 TraesCS5B01G493100 chr4B 96.739 92 3 0 3650 3741 592354518 592354427 3.920000e-33 154.0
33 TraesCS5B01G493100 chr3B 93.878 98 6 0 3637 3734 782116031 782115934 1.820000e-31 148.0
34 TraesCS5B01G493100 chr2A 86.139 101 12 2 7524 7624 88666433 88666335 3.090000e-19 108.0
35 TraesCS5B01G493100 chr3D 89.744 78 4 2 5653 5726 457058549 457058472 6.690000e-16 97.1
36 TraesCS5B01G493100 chr3D 88.312 77 3 4 5654 5725 457058473 457058548 4.030000e-13 87.9
37 TraesCS5B01G493100 chr3D 96.970 33 1 0 7974 8006 594752561 594752529 1.000000e-03 56.5
38 TraesCS5B01G493100 chr2D 90.278 72 5 1 5653 5724 449070821 449070752 8.660000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G493100 chr5B 661226562 661234664 8102 False 7108.500000 11982 100.000000 1 8103 2 chr5B.!!$F3 8102
1 TraesCS5B01G493100 chr5A 653293878 653300752 6874 False 1478.057143 5557 95.777714 1645 8103 7 chr5A.!!$F1 6458
2 TraesCS5B01G493100 chr5D 526128844 526135612 6768 False 2618.500000 3434 96.402750 750 7779 4 chr5D.!!$F3 7029
3 TraesCS5B01G493100 chr1A 273514529 273515194 665 True 487.000000 798 95.060500 1 627 2 chr1A.!!$R1 626
4 TraesCS5B01G493100 chr4A 696051560 696052231 671 True 254.050000 446 89.946500 164 661 2 chr4A.!!$R3 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 976 0.035725 TCAGTTAGTCGCTCTCCGGA 60.036 55.0 2.93 2.93 37.59 5.14 F
733 977 0.099082 CAGTTAGTCGCTCTCCGGAC 59.901 60.0 0.00 0.00 37.59 4.79 F
1132 1376 0.119155 TTCCTCCTCCACATCCACCT 59.881 55.0 0.00 0.00 0.00 4.00 F
1133 1377 0.325671 TCCTCCTCCACATCCACCTC 60.326 60.0 0.00 0.00 0.00 3.85 F
1159 1403 0.547712 CTTGTCCCTCCCTTCCCTCA 60.548 60.0 0.00 0.00 0.00 3.86 F
1169 1413 0.689412 CCTTCCCTCACCCTCCTCTC 60.689 65.0 0.00 0.00 0.00 3.20 F
2580 2917 0.892814 GGCTGCTGTGAGGAAAGCTT 60.893 55.0 0.00 0.00 40.21 3.74 F
3495 3832 0.322648 TGTCATGGACTGCTGGACTG 59.677 55.0 0.00 0.00 33.15 3.51 F
4893 5240 0.991355 TGGCCACCCTCCGGAATAAT 60.991 55.0 5.23 0.00 0.00 1.28 F
5672 6027 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.0 0.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 2566 0.848735 ATGGCCACCAGATATGCAGT 59.151 50.000 8.16 0.00 36.75 4.40 R
2510 2847 0.995024 CTCCAAGACCCATGTTCCCT 59.005 55.000 0.00 0.00 0.00 4.20 R
2660 2997 1.339610 GTGACTAGCGGATCAGAGCAT 59.660 52.381 0.00 0.00 35.48 3.79 R
2992 3329 3.251972 CAGTGGTCTCAGCTTTTTCTTCC 59.748 47.826 0.00 0.00 0.00 3.46 R
3442 3779 5.182001 GCAAGACTCCACTGTAACATGAAAT 59.818 40.000 0.00 0.00 0.00 2.17 R
3495 3832 0.947244 CAGAACACAGTTGCCAGACC 59.053 55.000 0.00 0.00 0.00 3.85 R
4180 4518 1.134580 GTAGCAGAGCAAGGATGAGCA 60.135 52.381 0.00 0.00 0.00 4.26 R
5581 5936 2.352030 CGTTTGCCTCCGTACTACTTCA 60.352 50.000 0.00 0.00 0.00 3.02 R
6556 6931 0.689412 TCCCGCCATCTACACCATCA 60.689 55.000 0.00 0.00 0.00 3.07 R
7155 7530 1.530720 TCTACGTGTGCATGCAACAAG 59.469 47.619 24.58 23.87 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.973419 TGTTCCGCCAACGTTAATTC 57.027 45.000 0.00 0.00 37.90 2.17
44 46 8.499162 CAACGTTAATTCTTCTGACTTCAAGAT 58.501 33.333 0.00 0.00 0.00 2.40
116 157 1.831286 CCCTACAGCCCCGATACGT 60.831 63.158 0.00 0.00 0.00 3.57
122 163 1.228490 AGCCCCGATACGTCCCTAG 60.228 63.158 0.00 0.00 0.00 3.02
139 180 3.891049 CCTAGGGGGACTGAGAATTTTG 58.109 50.000 0.00 0.00 37.23 2.44
149 190 5.760743 GGACTGAGAATTTTGCTATCCCTAC 59.239 44.000 0.00 0.00 0.00 3.18
169 210 1.812571 CCAAGTGATGCTGTAACCACC 59.187 52.381 0.00 0.00 0.00 4.61
410 454 9.905713 TCCTAGCATATTAGAACACATTTTCTT 57.094 29.630 0.00 0.00 37.09 2.52
512 557 1.339929 GAAAAATGGACAACCGTGGCT 59.660 47.619 0.00 0.00 39.42 4.75
589 634 2.488204 TGGCAAGATGTGATTTCCGA 57.512 45.000 0.00 0.00 0.00 4.55
591 636 2.487762 TGGCAAGATGTGATTTCCGAAC 59.512 45.455 0.00 0.00 0.00 3.95
594 639 4.545610 GCAAGATGTGATTTCCGAACAAA 58.454 39.130 0.00 0.00 0.00 2.83
595 640 5.163513 GCAAGATGTGATTTCCGAACAAAT 58.836 37.500 0.00 0.00 0.00 2.32
597 642 6.251376 GCAAGATGTGATTTCCGAACAAATAC 59.749 38.462 0.00 0.00 0.00 1.89
598 643 6.436843 AGATGTGATTTCCGAACAAATACC 57.563 37.500 0.00 0.00 0.00 2.73
601 646 4.216687 TGTGATTTCCGAACAAATACCACC 59.783 41.667 0.00 0.00 0.00 4.61
602 647 4.216687 GTGATTTCCGAACAAATACCACCA 59.783 41.667 0.00 0.00 0.00 4.17
605 655 5.379732 TTTCCGAACAAATACCACCATTC 57.620 39.130 0.00 0.00 0.00 2.67
618 668 2.231964 CCACCATTCTTGTGTGGGAATG 59.768 50.000 8.23 8.23 44.64 2.67
621 671 3.573967 ACCATTCTTGTGTGGGAATGAAC 59.426 43.478 14.67 0.00 46.70 3.18
626 870 4.894784 TCTTGTGTGGGAATGAACTAGAC 58.105 43.478 0.00 0.00 0.00 2.59
631 875 0.539986 GGGAATGAACTAGACGGGCA 59.460 55.000 0.00 0.00 0.00 5.36
661 905 2.971915 CGCGCCTTTAACGATCTAGTAG 59.028 50.000 0.00 0.00 0.00 2.57
662 906 3.306818 GCGCCTTTAACGATCTAGTAGG 58.693 50.000 0.00 0.00 0.00 3.18
663 907 3.856267 GCGCCTTTAACGATCTAGTAGGG 60.856 52.174 0.00 0.00 0.00 3.53
664 908 3.567164 CGCCTTTAACGATCTAGTAGGGA 59.433 47.826 0.00 0.00 0.00 4.20
665 909 4.217983 CGCCTTTAACGATCTAGTAGGGAT 59.782 45.833 0.00 0.00 0.00 3.85
666 910 5.471257 GCCTTTAACGATCTAGTAGGGATG 58.529 45.833 0.00 0.00 0.00 3.51
667 911 5.243283 GCCTTTAACGATCTAGTAGGGATGA 59.757 44.000 0.00 0.00 0.00 2.92
668 912 6.239232 GCCTTTAACGATCTAGTAGGGATGAA 60.239 42.308 0.00 0.00 0.00 2.57
669 913 7.686127 GCCTTTAACGATCTAGTAGGGATGAAA 60.686 40.741 0.00 0.00 0.00 2.69
670 914 8.202137 CCTTTAACGATCTAGTAGGGATGAAAA 58.798 37.037 0.00 0.00 0.00 2.29
671 915 8.937634 TTTAACGATCTAGTAGGGATGAAAAC 57.062 34.615 0.00 0.00 0.00 2.43
672 916 6.793505 AACGATCTAGTAGGGATGAAAACT 57.206 37.500 0.00 0.00 0.00 2.66
673 917 6.793505 ACGATCTAGTAGGGATGAAAACTT 57.206 37.500 0.00 0.00 0.00 2.66
674 918 7.893124 ACGATCTAGTAGGGATGAAAACTTA 57.107 36.000 0.00 0.00 0.00 2.24
675 919 8.480133 ACGATCTAGTAGGGATGAAAACTTAT 57.520 34.615 0.00 0.00 0.00 1.73
676 920 8.578151 ACGATCTAGTAGGGATGAAAACTTATC 58.422 37.037 0.00 0.00 0.00 1.75
677 921 7.751348 CGATCTAGTAGGGATGAAAACTTATCG 59.249 40.741 0.00 0.00 0.00 2.92
678 922 6.746120 TCTAGTAGGGATGAAAACTTATCGC 58.254 40.000 0.00 0.00 36.75 4.58
679 923 5.353394 AGTAGGGATGAAAACTTATCGCA 57.647 39.130 0.00 0.00 38.34 5.10
680 924 5.116882 AGTAGGGATGAAAACTTATCGCAC 58.883 41.667 0.00 0.00 38.34 5.34
681 925 4.222124 AGGGATGAAAACTTATCGCACT 57.778 40.909 0.00 0.00 38.34 4.40
682 926 5.353394 AGGGATGAAAACTTATCGCACTA 57.647 39.130 0.00 0.00 38.34 2.74
683 927 5.360591 AGGGATGAAAACTTATCGCACTAG 58.639 41.667 0.00 0.00 38.34 2.57
684 928 5.104900 AGGGATGAAAACTTATCGCACTAGT 60.105 40.000 0.00 0.00 38.34 2.57
685 929 5.585047 GGGATGAAAACTTATCGCACTAGTT 59.415 40.000 0.00 0.00 36.57 2.24
686 930 6.456988 GGGATGAAAACTTATCGCACTAGTTG 60.457 42.308 0.00 0.00 36.57 3.16
700 944 4.950926 CACTAGTTGCTTGTTCGAAGATG 58.049 43.478 0.00 0.08 35.04 2.90
701 945 4.686091 CACTAGTTGCTTGTTCGAAGATGA 59.314 41.667 11.75 0.00 35.04 2.92
702 946 4.926238 ACTAGTTGCTTGTTCGAAGATGAG 59.074 41.667 11.75 1.35 35.04 2.90
703 947 3.070018 AGTTGCTTGTTCGAAGATGAGG 58.930 45.455 11.75 0.00 35.04 3.86
704 948 2.808543 GTTGCTTGTTCGAAGATGAGGT 59.191 45.455 11.75 0.00 35.04 3.85
705 949 3.126001 TGCTTGTTCGAAGATGAGGTT 57.874 42.857 11.75 0.00 35.04 3.50
706 950 2.807967 TGCTTGTTCGAAGATGAGGTTG 59.192 45.455 11.75 0.00 35.04 3.77
707 951 2.808543 GCTTGTTCGAAGATGAGGTTGT 59.191 45.455 11.75 0.00 35.04 3.32
708 952 3.364366 GCTTGTTCGAAGATGAGGTTGTG 60.364 47.826 11.75 0.00 35.04 3.33
709 953 2.143122 TGTTCGAAGATGAGGTTGTGC 58.857 47.619 0.00 0.00 35.04 4.57
710 954 2.224281 TGTTCGAAGATGAGGTTGTGCT 60.224 45.455 0.00 0.00 35.04 4.40
711 955 2.370281 TCGAAGATGAGGTTGTGCTC 57.630 50.000 0.00 0.00 0.00 4.26
712 956 1.066858 TCGAAGATGAGGTTGTGCTCC 60.067 52.381 0.00 0.00 0.00 4.70
713 957 1.066573 CGAAGATGAGGTTGTGCTCCT 60.067 52.381 0.00 0.00 38.09 3.69
721 965 2.330216 AGGTTGTGCTCCTCAGTTAGT 58.670 47.619 0.00 0.00 0.00 2.24
722 966 2.300437 AGGTTGTGCTCCTCAGTTAGTC 59.700 50.000 0.00 0.00 0.00 2.59
723 967 2.329379 GTTGTGCTCCTCAGTTAGTCG 58.671 52.381 0.00 0.00 0.00 4.18
724 968 0.243907 TGTGCTCCTCAGTTAGTCGC 59.756 55.000 0.00 0.00 0.00 5.19
725 969 0.528470 GTGCTCCTCAGTTAGTCGCT 59.472 55.000 0.00 0.00 0.00 4.93
726 970 0.811915 TGCTCCTCAGTTAGTCGCTC 59.188 55.000 0.00 0.00 0.00 5.03
727 971 1.099689 GCTCCTCAGTTAGTCGCTCT 58.900 55.000 0.00 0.00 0.00 4.09
728 972 1.064952 GCTCCTCAGTTAGTCGCTCTC 59.935 57.143 0.00 0.00 0.00 3.20
729 973 1.673920 CTCCTCAGTTAGTCGCTCTCC 59.326 57.143 0.00 0.00 0.00 3.71
730 974 0.378962 CCTCAGTTAGTCGCTCTCCG 59.621 60.000 0.00 0.00 38.61 4.63
731 975 0.378962 CTCAGTTAGTCGCTCTCCGG 59.621 60.000 0.00 0.00 37.59 5.14
732 976 0.035725 TCAGTTAGTCGCTCTCCGGA 60.036 55.000 2.93 2.93 37.59 5.14
733 977 0.099082 CAGTTAGTCGCTCTCCGGAC 59.901 60.000 0.00 0.00 37.59 4.79
734 978 1.031029 AGTTAGTCGCTCTCCGGACC 61.031 60.000 0.00 0.00 37.59 4.46
735 979 2.110967 TTAGTCGCTCTCCGGACCG 61.111 63.158 6.99 6.99 37.59 4.79
745 989 3.391382 CCGGACCGGCTCTTCCTT 61.391 66.667 22.37 0.00 41.17 3.36
746 990 2.184579 CGGACCGGCTCTTCCTTC 59.815 66.667 5.81 0.00 0.00 3.46
747 991 2.585153 GGACCGGCTCTTCCTTCC 59.415 66.667 0.00 0.00 0.00 3.46
748 992 2.291043 GGACCGGCTCTTCCTTCCA 61.291 63.158 0.00 0.00 35.66 3.53
766 1010 8.893563 TCCTTCCATTCCATTTAGTAAACATT 57.106 30.769 0.00 0.00 0.00 2.71
783 1027 0.479815 ATTCCATGATGGGCCGTGAT 59.520 50.000 12.26 0.00 38.32 3.06
807 1051 1.555992 ACCGGACCGTTTATCATTGGA 59.444 47.619 9.46 0.00 0.00 3.53
815 1059 0.253610 TTTATCATTGGACGGGCCGT 59.746 50.000 34.81 34.81 45.10 5.68
816 1060 0.462937 TTATCATTGGACGGGCCGTG 60.463 55.000 39.41 22.05 41.37 4.94
860 1104 0.750546 CCGGACCACCTACGATCTGA 60.751 60.000 0.00 0.00 0.00 3.27
905 1149 1.875963 CGAAGGAACGCAGCCAAAT 59.124 52.632 0.00 0.00 0.00 2.32
946 1190 0.480252 CCCTCCCAATTCCCATCTCC 59.520 60.000 0.00 0.00 0.00 3.71
1121 1365 4.214327 CCGCGCCTCTTCCTCCTC 62.214 72.222 0.00 0.00 0.00 3.71
1122 1366 4.214327 CGCGCCTCTTCCTCCTCC 62.214 72.222 0.00 0.00 0.00 4.30
1123 1367 3.077556 GCGCCTCTTCCTCCTCCA 61.078 66.667 0.00 0.00 0.00 3.86
1124 1368 2.896443 CGCCTCTTCCTCCTCCAC 59.104 66.667 0.00 0.00 0.00 4.02
1125 1369 1.984570 CGCCTCTTCCTCCTCCACA 60.985 63.158 0.00 0.00 0.00 4.17
1126 1370 1.333636 CGCCTCTTCCTCCTCCACAT 61.334 60.000 0.00 0.00 0.00 3.21
1127 1371 0.467804 GCCTCTTCCTCCTCCACATC 59.532 60.000 0.00 0.00 0.00 3.06
1128 1372 1.127343 CCTCTTCCTCCTCCACATCC 58.873 60.000 0.00 0.00 0.00 3.51
1129 1373 1.623557 CCTCTTCCTCCTCCACATCCA 60.624 57.143 0.00 0.00 0.00 3.41
1130 1374 1.484240 CTCTTCCTCCTCCACATCCAC 59.516 57.143 0.00 0.00 0.00 4.02
1131 1375 0.543749 CTTCCTCCTCCACATCCACC 59.456 60.000 0.00 0.00 0.00 4.61
1132 1376 0.119155 TTCCTCCTCCACATCCACCT 59.881 55.000 0.00 0.00 0.00 4.00
1133 1377 0.325671 TCCTCCTCCACATCCACCTC 60.326 60.000 0.00 0.00 0.00 3.85
1134 1378 1.341156 CCTCCTCCACATCCACCTCC 61.341 65.000 0.00 0.00 0.00 4.30
1135 1379 1.306997 TCCTCCACATCCACCTCCC 60.307 63.158 0.00 0.00 0.00 4.30
1136 1380 2.378634 CCTCCACATCCACCTCCCC 61.379 68.421 0.00 0.00 0.00 4.81
1137 1381 2.687200 TCCACATCCACCTCCCCG 60.687 66.667 0.00 0.00 0.00 5.73
1138 1382 4.489771 CCACATCCACCTCCCCGC 62.490 72.222 0.00 0.00 0.00 6.13
1139 1383 4.489771 CACATCCACCTCCCCGCC 62.490 72.222 0.00 0.00 0.00 6.13
1142 1386 4.760220 ATCCACCTCCCCGCCCTT 62.760 66.667 0.00 0.00 0.00 3.95
1145 1389 4.410400 CACCTCCCCGCCCTTGTC 62.410 72.222 0.00 0.00 0.00 3.18
1153 1397 3.330720 CGCCCTTGTCCCTCCCTT 61.331 66.667 0.00 0.00 0.00 3.95
1154 1398 2.677848 GCCCTTGTCCCTCCCTTC 59.322 66.667 0.00 0.00 0.00 3.46
1155 1399 2.985116 GCCCTTGTCCCTCCCTTCC 61.985 68.421 0.00 0.00 0.00 3.46
1156 1400 2.309504 CCCTTGTCCCTCCCTTCCC 61.310 68.421 0.00 0.00 0.00 3.97
1157 1401 1.229984 CCTTGTCCCTCCCTTCCCT 60.230 63.158 0.00 0.00 0.00 4.20
1158 1402 1.275421 CCTTGTCCCTCCCTTCCCTC 61.275 65.000 0.00 0.00 0.00 4.30
1159 1403 0.547712 CTTGTCCCTCCCTTCCCTCA 60.548 60.000 0.00 0.00 0.00 3.86
1160 1404 0.840722 TTGTCCCTCCCTTCCCTCAC 60.841 60.000 0.00 0.00 0.00 3.51
1161 1405 1.996187 GTCCCTCCCTTCCCTCACC 60.996 68.421 0.00 0.00 0.00 4.02
1162 1406 2.692741 CCCTCCCTTCCCTCACCC 60.693 72.222 0.00 0.00 0.00 4.61
1163 1407 2.456840 CCTCCCTTCCCTCACCCT 59.543 66.667 0.00 0.00 0.00 4.34
1164 1408 1.690985 CCTCCCTTCCCTCACCCTC 60.691 68.421 0.00 0.00 0.00 4.30
1165 1409 1.690985 CTCCCTTCCCTCACCCTCC 60.691 68.421 0.00 0.00 0.00 4.30
1166 1410 2.184631 TCCCTTCCCTCACCCTCCT 61.185 63.158 0.00 0.00 0.00 3.69
1167 1411 1.690985 CCCTTCCCTCACCCTCCTC 60.691 68.421 0.00 0.00 0.00 3.71
1168 1412 1.394151 CCTTCCCTCACCCTCCTCT 59.606 63.158 0.00 0.00 0.00 3.69
1169 1413 0.689412 CCTTCCCTCACCCTCCTCTC 60.689 65.000 0.00 0.00 0.00 3.20
1170 1414 0.689412 CTTCCCTCACCCTCCTCTCC 60.689 65.000 0.00 0.00 0.00 3.71
1171 1415 1.156322 TTCCCTCACCCTCCTCTCCT 61.156 60.000 0.00 0.00 0.00 3.69
1172 1416 1.075600 CCCTCACCCTCCTCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
1173 1417 1.075600 CCTCACCCTCCTCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
1174 1418 1.075600 CTCACCCTCCTCTCCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
1175 1419 2.041405 CACCCTCCTCTCCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
1176 1420 3.756783 ACCCTCCTCTCCTCCCCG 61.757 72.222 0.00 0.00 0.00 5.73
1177 1421 4.548513 CCCTCCTCTCCTCCCCGG 62.549 77.778 0.00 0.00 0.00 5.73
1205 1449 4.806339 CTCCCTCTTCCCCCGCCT 62.806 72.222 0.00 0.00 0.00 5.52
1206 1450 4.798682 TCCCTCTTCCCCCGCCTC 62.799 72.222 0.00 0.00 0.00 4.70
1632 1876 2.443016 ACCTCCGCCTCCTGCTAG 60.443 66.667 0.00 0.00 38.05 3.42
1633 1877 3.922640 CCTCCGCCTCCTGCTAGC 61.923 72.222 8.10 8.10 38.05 3.42
1634 1878 3.922640 CTCCGCCTCCTGCTAGCC 61.923 72.222 13.29 0.00 38.05 3.93
2229 2566 1.149101 ACTTCAAAGGGAGGGCTTCA 58.851 50.000 0.00 0.00 0.00 3.02
2399 2736 1.134220 GTGTTGGTGGAGAGGTGTTCA 60.134 52.381 0.00 0.00 0.00 3.18
2402 2739 1.048601 TGGTGGAGAGGTGTTCAGAC 58.951 55.000 0.00 0.00 0.00 3.51
2414 2751 3.596066 TTCAGACAGCGCTGGAGCC 62.596 63.158 38.27 23.87 37.91 4.70
2490 2827 2.722487 GCGTGGAGGTCGATCGAT 59.278 61.111 22.50 5.91 0.00 3.59
2510 2847 4.502087 CGATTGCAGGAGGTGATGAAGATA 60.502 45.833 0.00 0.00 0.00 1.98
2567 2904 2.621998 GTGCATTGATGATAAGGCTGCT 59.378 45.455 0.00 0.00 38.12 4.24
2570 2907 3.550233 GCATTGATGATAAGGCTGCTGTG 60.550 47.826 0.00 0.00 34.75 3.66
2580 2917 0.892814 GGCTGCTGTGAGGAAAGCTT 60.893 55.000 0.00 0.00 40.21 3.74
2660 2997 2.438074 TTACTGCAATGGGGGCTGCA 62.438 55.000 0.50 0.00 46.01 4.41
2992 3329 1.952296 GATATGTGCAAGCCTTGGGAG 59.048 52.381 6.57 0.00 0.00 4.30
3222 3559 2.159327 CCAAGAAGGCAAAGGCAAAG 57.841 50.000 0.00 0.00 43.71 2.77
3223 3560 1.270465 CCAAGAAGGCAAAGGCAAAGG 60.270 52.381 0.00 0.00 43.71 3.11
3442 3779 8.367911 CAATATCTACTCTGGTGCCAATAAGTA 58.632 37.037 0.00 1.02 0.00 2.24
3495 3832 0.322648 TGTCATGGACTGCTGGACTG 59.677 55.000 0.00 0.00 33.15 3.51
3591 3928 5.080969 TCCTGTTACATTGTACACTAGCC 57.919 43.478 0.00 0.00 0.00 3.93
3661 3998 9.640963 ATTGTAAACTATTGTACTCACTCTGTC 57.359 33.333 0.00 0.00 0.00 3.51
3662 3999 7.600065 TGTAAACTATTGTACTCACTCTGTCC 58.400 38.462 0.00 0.00 0.00 4.02
3663 4000 5.662674 AACTATTGTACTCACTCTGTCCC 57.337 43.478 0.00 0.00 0.00 4.46
3664 4001 4.673968 ACTATTGTACTCACTCTGTCCCA 58.326 43.478 0.00 0.00 0.00 4.37
3665 4002 4.707448 ACTATTGTACTCACTCTGTCCCAG 59.293 45.833 0.00 0.00 0.00 4.45
3666 4003 2.971901 TGTACTCACTCTGTCCCAGA 57.028 50.000 0.00 0.00 38.25 3.86
3667 4004 3.238788 TGTACTCACTCTGTCCCAGAA 57.761 47.619 0.00 0.00 40.18 3.02
3668 4005 3.779444 TGTACTCACTCTGTCCCAGAAT 58.221 45.455 0.00 0.00 40.18 2.40
3669 4006 4.930696 TGTACTCACTCTGTCCCAGAATA 58.069 43.478 0.00 0.00 40.18 1.75
3670 4007 5.519808 TGTACTCACTCTGTCCCAGAATAT 58.480 41.667 0.00 0.00 40.18 1.28
3671 4008 6.669631 TGTACTCACTCTGTCCCAGAATATA 58.330 40.000 0.00 0.00 40.18 0.86
3672 4009 7.123383 TGTACTCACTCTGTCCCAGAATATAA 58.877 38.462 0.00 0.00 40.18 0.98
3673 4010 6.723298 ACTCACTCTGTCCCAGAATATAAG 57.277 41.667 0.00 0.00 40.18 1.73
3674 4011 6.436027 ACTCACTCTGTCCCAGAATATAAGA 58.564 40.000 0.00 0.00 40.18 2.10
3675 4012 6.897966 ACTCACTCTGTCCCAGAATATAAGAA 59.102 38.462 0.00 0.00 40.18 2.52
3676 4013 7.113658 TCACTCTGTCCCAGAATATAAGAAC 57.886 40.000 0.00 0.00 40.18 3.01
3677 4014 5.980116 CACTCTGTCCCAGAATATAAGAACG 59.020 44.000 0.00 0.00 40.18 3.95
3678 4015 5.657302 ACTCTGTCCCAGAATATAAGAACGT 59.343 40.000 0.00 0.00 40.18 3.99
3679 4016 6.154706 ACTCTGTCCCAGAATATAAGAACGTT 59.845 38.462 0.00 0.00 40.18 3.99
3680 4017 6.942976 TCTGTCCCAGAATATAAGAACGTTT 58.057 36.000 0.46 0.00 37.57 3.60
3681 4018 7.391620 TCTGTCCCAGAATATAAGAACGTTTT 58.608 34.615 0.46 0.00 37.57 2.43
3682 4019 7.881232 TCTGTCCCAGAATATAAGAACGTTTTT 59.119 33.333 9.22 9.22 37.57 1.94
3683 4020 7.812648 TGTCCCAGAATATAAGAACGTTTTTG 58.187 34.615 13.87 0.00 0.00 2.44
3684 4021 7.662258 TGTCCCAGAATATAAGAACGTTTTTGA 59.338 33.333 13.87 2.81 0.00 2.69
3685 4022 7.961283 GTCCCAGAATATAAGAACGTTTTTGAC 59.039 37.037 13.87 5.89 0.00 3.18
3686 4023 7.662258 TCCCAGAATATAAGAACGTTTTTGACA 59.338 33.333 13.87 0.01 0.00 3.58
3687 4024 7.749126 CCCAGAATATAAGAACGTTTTTGACAC 59.251 37.037 13.87 2.84 0.00 3.67
3688 4025 8.504005 CCAGAATATAAGAACGTTTTTGACACT 58.496 33.333 13.87 4.79 0.00 3.55
3692 4029 9.769093 AATATAAGAACGTTTTTGACACTATGC 57.231 29.630 13.87 0.00 0.00 3.14
3693 4030 5.751243 AAGAACGTTTTTGACACTATGCT 57.249 34.783 0.46 0.00 0.00 3.79
3694 4031 6.854496 AAGAACGTTTTTGACACTATGCTA 57.146 33.333 0.46 0.00 0.00 3.49
3695 4032 6.467723 AGAACGTTTTTGACACTATGCTAG 57.532 37.500 0.46 0.00 0.00 3.42
3696 4033 5.989777 AGAACGTTTTTGACACTATGCTAGT 59.010 36.000 0.46 0.00 40.28 2.57
3710 4047 7.958053 ACTATGCTAGTGTTAAAAACGTTCT 57.042 32.000 0.00 0.00 37.69 3.01
3711 4048 8.374327 ACTATGCTAGTGTTAAAAACGTTCTT 57.626 30.769 0.00 0.00 37.69 2.52
3712 4049 9.480053 ACTATGCTAGTGTTAAAAACGTTCTTA 57.520 29.630 0.00 0.00 37.69 2.10
3724 4061 9.609950 TTAAAAACGTTCTTATATTTTGGGACG 57.390 29.630 0.00 0.00 0.00 4.79
3725 4062 5.806366 AACGTTCTTATATTTTGGGACGG 57.194 39.130 0.00 0.00 0.00 4.79
3726 4063 5.088680 ACGTTCTTATATTTTGGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
3727 4064 5.114081 ACGTTCTTATATTTTGGGACGGAG 58.886 41.667 0.00 0.00 0.00 4.63
3728 4065 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
3729 4066 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
3730 4067 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
3731 4068 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
3732 4069 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3733 4070 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3797 4134 6.614694 TTTAATAGGCAGAACTGTAGACCA 57.385 37.500 3.77 0.00 0.00 4.02
3898 4235 2.832129 AGCTTAGCTGTAGCAACTACCA 59.168 45.455 20.52 0.00 45.16 3.25
3945 4282 1.133606 CCACCAGTTACAGGTTTGGGT 60.134 52.381 0.00 0.00 37.23 4.51
3949 4286 1.877443 CAGTTACAGGTTTGGGTTCGG 59.123 52.381 0.00 0.00 0.00 4.30
3970 4307 9.155975 GTTCGGATCATAAGATAATGCAGTATT 57.844 33.333 8.26 0.00 33.72 1.89
3999 4337 7.855409 TGCGTTGCTTTGATATTTGTCATATAC 59.145 33.333 0.00 0.00 0.00 1.47
4893 5240 0.991355 TGGCCACCCTCCGGAATAAT 60.991 55.000 5.23 0.00 0.00 1.28
4970 5317 6.100279 TGGTGAGCTTATATCTCTGAATGGTT 59.900 38.462 0.00 0.00 0.00 3.67
5196 5549 3.881089 CAGTGCTTGATCCAATATGAGCA 59.119 43.478 0.00 0.00 37.76 4.26
5326 5679 4.470462 GCTATTGCTGGCAATTAAGATCG 58.530 43.478 22.96 7.36 43.32 3.69
5385 5738 7.864379 CAGCAGTTCTTTTGATTCTGTACATTT 59.136 33.333 0.00 0.00 35.11 2.32
5389 5742 9.736023 AGTTCTTTTGATTCTGTACATTTTGTC 57.264 29.630 0.00 0.00 0.00 3.18
5533 5888 2.372172 ACTTACACTGACCCCTCCTTTG 59.628 50.000 0.00 0.00 0.00 2.77
5534 5889 2.112279 TACACTGACCCCTCCTTTGT 57.888 50.000 0.00 0.00 0.00 2.83
5581 5936 2.046892 GTGCTGCGTGATCCCTGT 60.047 61.111 0.00 0.00 0.00 4.00
5617 5972 1.862201 CAAACGTTTGTCCTACTCGCA 59.138 47.619 28.72 0.00 33.59 5.10
5624 5979 2.902705 TGTCCTACTCGCAAAGTTGT 57.097 45.000 0.00 0.00 39.55 3.32
5657 6012 8.721478 TGCTTTATCATTCTTTCAGTGTTACTC 58.279 33.333 0.00 0.00 0.00 2.59
5661 6016 5.794894 TCATTCTTTCAGTGTTACTCCCTC 58.205 41.667 0.00 0.00 0.00 4.30
5662 6017 4.618920 TTCTTTCAGTGTTACTCCCTCC 57.381 45.455 0.00 0.00 0.00 4.30
5672 6027 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
5680 6035 4.563580 CCCTCCGTCCCACAATATAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
5681 6036 4.563580 CCTCCGTCCCACAATATAAGATGG 60.564 50.000 0.00 0.00 35.36 3.51
5685 6040 6.099990 TCCGTCCCACAATATAAGATGGTTTA 59.900 38.462 0.00 0.00 35.52 2.01
5686 6041 6.426937 CCGTCCCACAATATAAGATGGTTTAG 59.573 42.308 0.00 0.00 0.00 1.85
5688 6043 6.998673 GTCCCACAATATAAGATGGTTTAGCT 59.001 38.462 0.00 0.00 0.00 3.32
5689 6044 7.502561 GTCCCACAATATAAGATGGTTTAGCTT 59.497 37.037 0.00 0.00 38.77 3.74
5691 6046 7.502226 CCCACAATATAAGATGGTTTAGCTTGA 59.498 37.037 0.00 0.00 35.44 3.02
5740 6107 7.093289 CGGAGGGAGTACATCTAAATATCCATT 60.093 40.741 0.00 0.00 0.00 3.16
5741 6108 8.261522 GGAGGGAGTACATCTAAATATCCATTC 58.738 40.741 0.00 0.00 0.00 2.67
5928 6295 9.401058 CTCTTGGTATTCTGTATCATTTCCTTT 57.599 33.333 0.00 0.00 0.00 3.11
5929 6296 9.753674 TCTTGGTATTCTGTATCATTTCCTTTT 57.246 29.630 0.00 0.00 0.00 2.27
6077 6451 2.232696 GTCTCAGAGTTCTCAAGGGTCC 59.767 54.545 0.00 0.00 0.00 4.46
6099 6473 3.812053 CCAAAGTTCAGACAGAGGACAAG 59.188 47.826 0.00 0.00 0.00 3.16
6114 6488 2.427095 GGACAAGCCCTTTTTGCGATAT 59.573 45.455 0.00 0.00 0.00 1.63
6532 6907 0.178970 GCATCCATCCCAGCATCCTT 60.179 55.000 0.00 0.00 0.00 3.36
6564 6939 2.038164 CCGAGATGGATGATGATGGTGT 59.962 50.000 0.00 0.00 42.00 4.16
6649 7024 3.196469 AGAAGAACCTGATTCAGATCGCA 59.804 43.478 15.36 0.00 40.09 5.10
6725 7100 2.673523 GGTGCCTGATGGAGTGCT 59.326 61.111 0.00 0.00 34.57 4.40
6790 7165 2.980233 GTGGCGGACAAGCAGCTT 60.980 61.111 0.21 0.21 37.85 3.74
6823 7198 3.258372 TCCTCTACGACATGCAGAAGTTT 59.742 43.478 0.00 0.00 0.00 2.66
6855 7230 1.671742 GCAAGTCGTCCAGGGAAGA 59.328 57.895 0.00 0.00 0.00 2.87
6865 7240 3.775654 AGGGAAGAAGAGGCCGCG 61.776 66.667 0.00 0.00 0.00 6.46
6907 7282 1.039068 CTGCTCCTGATCCGAGTGAT 58.961 55.000 8.30 0.00 36.01 3.06
7057 7432 1.329256 GCCGTCCAGCTATCCTAGAA 58.671 55.000 0.00 0.00 0.00 2.10
7122 7497 1.878948 GCATGCCCACAACTTGCAATT 60.879 47.619 6.36 0.00 38.69 2.32
7482 8040 2.981997 CCGGTTTATAGCCACGGTC 58.018 57.895 0.00 0.00 39.70 4.79
7557 8116 4.640771 ACTTTGCATCTCAAGTCCCTAA 57.359 40.909 0.00 0.00 35.84 2.69
7676 8437 8.691797 TGAACATTATCCTTAGGCCAATAAAAC 58.308 33.333 5.01 0.00 0.00 2.43
7839 8601 7.284489 TCAGTTTTGTTATGTGCTACTTTCCTT 59.716 33.333 0.00 0.00 0.00 3.36
7861 8623 2.620115 GGTGATTGCCCATGTCATACAG 59.380 50.000 0.00 0.00 0.00 2.74
7896 8658 2.689983 CTGTTTCCAGCAAAGAACAGGT 59.310 45.455 12.46 0.00 43.11 4.00
7921 8683 5.923684 GGCGTTCTTTTGTTTTATGAATGGA 59.076 36.000 0.00 0.00 0.00 3.41
7971 8734 6.732531 TTGATGAGCAAATTCTCTACAGTG 57.267 37.500 0.00 0.00 32.46 3.66
7986 8749 6.158169 TCTCTACAGTGATACTCCCTCTGTAA 59.842 42.308 0.00 0.00 39.82 2.41
7990 8753 5.654650 ACAGTGATACTCCCTCTGTAAAGAG 59.345 44.000 2.55 2.55 37.55 2.85
8031 8809 9.482627 AGATCTAAGCGGTCTTATATTTCTTTG 57.517 33.333 0.00 0.00 34.54 2.77
8040 8818 6.828785 GGTCTTATATTTCTTTGCAGAGGGAA 59.171 38.462 4.15 0.78 0.00 3.97
8098 8876 4.588899 TCACCTTCTGGACCATACATTTG 58.411 43.478 0.00 0.00 37.04 2.32
8099 8877 4.042809 TCACCTTCTGGACCATACATTTGT 59.957 41.667 0.00 0.00 37.04 2.83
8101 8879 5.943416 CACCTTCTGGACCATACATTTGTTA 59.057 40.000 0.00 0.00 37.04 2.41
8102 8880 6.094048 CACCTTCTGGACCATACATTTGTTAG 59.906 42.308 0.00 0.00 37.04 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.432252 AGTCAGAAGAATTAACGTTGGCG 59.568 43.478 11.99 0.00 44.93 5.69
20 21 7.360438 GCATCTTGAAGTCAGAAGAATTAACGT 60.360 37.037 0.00 0.00 31.24 3.99
29 30 4.023450 TGCAAAGCATCTTGAAGTCAGAAG 60.023 41.667 0.00 0.00 31.71 2.85
44 46 4.098349 ACTCTTTGATGTTTCTGCAAAGCA 59.902 37.500 0.00 0.00 44.88 3.91
122 163 2.222227 AGCAAAATTCTCAGTCCCCC 57.778 50.000 0.00 0.00 0.00 5.40
139 180 2.370189 AGCATCACTTGGTAGGGATAGC 59.630 50.000 0.00 0.00 42.74 2.97
149 190 1.812571 GGTGGTTACAGCATCACTTGG 59.187 52.381 0.00 0.00 44.32 3.61
503 548 1.520787 GCGCTATGTAGCCACGGTT 60.521 57.895 0.00 0.00 46.34 4.44
512 557 0.318441 GAGCATCCAGGCGCTATGTA 59.682 55.000 7.64 0.00 38.99 2.29
589 634 5.221422 CCACACAAGAATGGTGGTATTTGTT 60.221 40.000 0.00 0.00 40.31 2.83
591 636 4.321899 CCCACACAAGAATGGTGGTATTTG 60.322 45.833 8.99 0.00 42.05 2.32
594 639 2.647299 TCCCACACAAGAATGGTGGTAT 59.353 45.455 8.99 0.00 42.05 2.73
595 640 2.058705 TCCCACACAAGAATGGTGGTA 58.941 47.619 8.99 0.00 42.05 3.25
597 642 1.993956 TTCCCACACAAGAATGGTGG 58.006 50.000 0.00 0.00 42.67 4.61
598 643 3.156293 TCATTCCCACACAAGAATGGTG 58.844 45.455 11.60 0.00 46.09 4.17
601 646 5.939883 TCTAGTTCATTCCCACACAAGAATG 59.060 40.000 6.42 6.42 47.00 2.67
602 647 5.940470 GTCTAGTTCATTCCCACACAAGAAT 59.060 40.000 0.00 0.00 32.95 2.40
605 655 3.679980 CGTCTAGTTCATTCCCACACAAG 59.320 47.826 0.00 0.00 0.00 3.16
618 668 0.320421 TTGCTGTGCCCGTCTAGTTC 60.320 55.000 0.00 0.00 0.00 3.01
621 671 2.094659 CGTTGCTGTGCCCGTCTAG 61.095 63.158 0.00 0.00 0.00 2.43
661 905 5.116882 ACTAGTGCGATAAGTTTTCATCCC 58.883 41.667 0.00 0.00 0.00 3.85
662 906 6.478588 CAACTAGTGCGATAAGTTTTCATCC 58.521 40.000 0.00 0.00 31.21 3.51
663 907 5.960105 GCAACTAGTGCGATAAGTTTTCATC 59.040 40.000 0.00 0.00 45.10 2.92
664 908 5.869350 GCAACTAGTGCGATAAGTTTTCAT 58.131 37.500 0.00 0.00 45.10 2.57
665 909 5.277601 GCAACTAGTGCGATAAGTTTTCA 57.722 39.130 0.00 0.00 45.10 2.69
678 922 4.686091 TCATCTTCGAACAAGCAACTAGTG 59.314 41.667 0.00 0.00 0.00 2.74
679 923 4.883083 TCATCTTCGAACAAGCAACTAGT 58.117 39.130 0.00 0.00 0.00 2.57
680 924 4.328440 CCTCATCTTCGAACAAGCAACTAG 59.672 45.833 0.00 0.00 0.00 2.57
681 925 4.245660 CCTCATCTTCGAACAAGCAACTA 58.754 43.478 0.00 0.00 0.00 2.24
682 926 3.070018 CCTCATCTTCGAACAAGCAACT 58.930 45.455 0.00 0.00 0.00 3.16
683 927 2.808543 ACCTCATCTTCGAACAAGCAAC 59.191 45.455 0.00 0.00 0.00 4.17
684 928 3.126001 ACCTCATCTTCGAACAAGCAA 57.874 42.857 0.00 0.00 0.00 3.91
685 929 2.807967 CAACCTCATCTTCGAACAAGCA 59.192 45.455 0.00 0.00 0.00 3.91
686 930 2.808543 ACAACCTCATCTTCGAACAAGC 59.191 45.455 0.00 0.00 0.00 4.01
687 931 3.364366 GCACAACCTCATCTTCGAACAAG 60.364 47.826 0.00 0.00 0.00 3.16
688 932 2.548057 GCACAACCTCATCTTCGAACAA 59.452 45.455 0.00 0.00 0.00 2.83
689 933 2.143122 GCACAACCTCATCTTCGAACA 58.857 47.619 0.00 0.00 0.00 3.18
690 934 2.413453 GAGCACAACCTCATCTTCGAAC 59.587 50.000 0.00 0.00 0.00 3.95
691 935 2.612972 GGAGCACAACCTCATCTTCGAA 60.613 50.000 0.00 0.00 33.47 3.71
692 936 1.066858 GGAGCACAACCTCATCTTCGA 60.067 52.381 0.00 0.00 33.47 3.71
693 937 1.066573 AGGAGCACAACCTCATCTTCG 60.067 52.381 0.00 0.00 33.47 3.79
694 938 2.777832 AGGAGCACAACCTCATCTTC 57.222 50.000 0.00 0.00 33.47 2.87
701 945 2.300437 GACTAACTGAGGAGCACAACCT 59.700 50.000 0.00 0.00 40.80 3.50
702 946 2.689646 GACTAACTGAGGAGCACAACC 58.310 52.381 0.00 0.00 0.00 3.77
703 947 2.329379 CGACTAACTGAGGAGCACAAC 58.671 52.381 0.00 0.00 0.00 3.32
704 948 1.336887 GCGACTAACTGAGGAGCACAA 60.337 52.381 0.00 0.00 33.47 3.33
705 949 0.243907 GCGACTAACTGAGGAGCACA 59.756 55.000 0.00 0.00 33.47 4.57
706 950 0.528470 AGCGACTAACTGAGGAGCAC 59.472 55.000 0.00 0.00 35.06 4.40
707 951 0.811915 GAGCGACTAACTGAGGAGCA 59.188 55.000 0.00 0.00 35.06 4.26
708 952 1.064952 GAGAGCGACTAACTGAGGAGC 59.935 57.143 0.00 0.00 33.44 4.70
709 953 1.673920 GGAGAGCGACTAACTGAGGAG 59.326 57.143 0.00 0.00 0.00 3.69
710 954 1.752683 GGAGAGCGACTAACTGAGGA 58.247 55.000 0.00 0.00 0.00 3.71
711 955 0.378962 CGGAGAGCGACTAACTGAGG 59.621 60.000 0.00 0.00 0.00 3.86
712 956 0.378962 CCGGAGAGCGACTAACTGAG 59.621 60.000 0.00 0.00 0.00 3.35
713 957 0.035725 TCCGGAGAGCGACTAACTGA 60.036 55.000 0.00 0.00 0.00 3.41
714 958 0.099082 GTCCGGAGAGCGACTAACTG 59.901 60.000 3.06 0.00 0.00 3.16
715 959 1.031029 GGTCCGGAGAGCGACTAACT 61.031 60.000 3.06 0.00 0.00 2.24
716 960 1.432657 GGTCCGGAGAGCGACTAAC 59.567 63.158 3.06 0.00 0.00 2.34
717 961 3.915575 GGTCCGGAGAGCGACTAA 58.084 61.111 3.06 0.00 0.00 2.24
729 973 2.184579 GAAGGAAGAGCCGGTCCG 59.815 66.667 3.60 3.60 43.43 4.79
730 974 1.627297 ATGGAAGGAAGAGCCGGTCC 61.627 60.000 1.90 1.07 42.81 4.46
731 975 0.253327 AATGGAAGGAAGAGCCGGTC 59.747 55.000 1.90 0.00 43.43 4.79
732 976 0.253327 GAATGGAAGGAAGAGCCGGT 59.747 55.000 1.90 0.00 43.43 5.28
733 977 0.464554 GGAATGGAAGGAAGAGCCGG 60.465 60.000 0.00 0.00 43.43 6.13
734 978 0.253044 TGGAATGGAAGGAAGAGCCG 59.747 55.000 0.00 0.00 43.43 5.52
735 979 2.744352 ATGGAATGGAAGGAAGAGCC 57.256 50.000 0.00 0.00 0.00 4.70
736 980 5.196695 ACTAAATGGAATGGAAGGAAGAGC 58.803 41.667 0.00 0.00 0.00 4.09
737 981 8.678199 GTTTACTAAATGGAATGGAAGGAAGAG 58.322 37.037 0.00 0.00 0.00 2.85
738 982 8.167392 TGTTTACTAAATGGAATGGAAGGAAGA 58.833 33.333 0.00 0.00 0.00 2.87
739 983 8.348285 TGTTTACTAAATGGAATGGAAGGAAG 57.652 34.615 0.00 0.00 0.00 3.46
740 984 8.893563 ATGTTTACTAAATGGAATGGAAGGAA 57.106 30.769 0.00 0.00 0.00 3.36
741 985 8.893563 AATGTTTACTAAATGGAATGGAAGGA 57.106 30.769 0.00 0.00 0.00 3.36
742 986 8.197439 GGAATGTTTACTAAATGGAATGGAAGG 58.803 37.037 0.00 0.00 0.00 3.46
743 987 8.748412 TGGAATGTTTACTAAATGGAATGGAAG 58.252 33.333 0.00 0.00 0.00 3.46
744 988 8.657387 TGGAATGTTTACTAAATGGAATGGAA 57.343 30.769 0.00 0.00 0.00 3.53
745 989 8.694540 CATGGAATGTTTACTAAATGGAATGGA 58.305 33.333 0.00 0.00 40.20 3.41
746 990 8.694540 TCATGGAATGTTTACTAAATGGAATGG 58.305 33.333 0.00 0.00 46.80 3.16
766 1010 1.148949 CATCACGGCCCATCATGGA 59.851 57.895 4.75 0.00 40.96 3.41
783 1027 0.967662 TGATAAACGGTCCGGTCACA 59.032 50.000 17.28 7.55 0.00 3.58
887 1131 0.179189 GATTTGGCTGCGTTCCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
891 1135 1.019278 TCGAGATTTGGCTGCGTTCC 61.019 55.000 0.00 0.00 0.00 3.62
902 1146 0.246635 CGTGGGTGGACTCGAGATTT 59.753 55.000 21.68 0.00 0.00 2.17
905 1149 2.675423 CCGTGGGTGGACTCGAGA 60.675 66.667 21.68 0.00 0.00 4.04
1063 1307 2.042843 GAGGAAGGCGGAGAGGGA 60.043 66.667 0.00 0.00 0.00 4.20
1107 1351 1.333636 ATGTGGAGGAGGAAGAGGCG 61.334 60.000 0.00 0.00 0.00 5.52
1108 1352 0.467804 GATGTGGAGGAGGAAGAGGC 59.532 60.000 0.00 0.00 0.00 4.70
1109 1353 1.127343 GGATGTGGAGGAGGAAGAGG 58.873 60.000 0.00 0.00 0.00 3.69
1110 1354 1.484240 GTGGATGTGGAGGAGGAAGAG 59.516 57.143 0.00 0.00 0.00 2.85
1111 1355 1.573108 GTGGATGTGGAGGAGGAAGA 58.427 55.000 0.00 0.00 0.00 2.87
1112 1356 0.543749 GGTGGATGTGGAGGAGGAAG 59.456 60.000 0.00 0.00 0.00 3.46
1113 1357 0.119155 AGGTGGATGTGGAGGAGGAA 59.881 55.000 0.00 0.00 0.00 3.36
1114 1358 0.325671 GAGGTGGATGTGGAGGAGGA 60.326 60.000 0.00 0.00 0.00 3.71
1115 1359 1.341156 GGAGGTGGATGTGGAGGAGG 61.341 65.000 0.00 0.00 0.00 4.30
1116 1360 1.341156 GGGAGGTGGATGTGGAGGAG 61.341 65.000 0.00 0.00 0.00 3.69
1117 1361 1.306997 GGGAGGTGGATGTGGAGGA 60.307 63.158 0.00 0.00 0.00 3.71
1118 1362 2.378634 GGGGAGGTGGATGTGGAGG 61.379 68.421 0.00 0.00 0.00 4.30
1119 1363 2.735772 CGGGGAGGTGGATGTGGAG 61.736 68.421 0.00 0.00 0.00 3.86
1120 1364 2.687200 CGGGGAGGTGGATGTGGA 60.687 66.667 0.00 0.00 0.00 4.02
1121 1365 4.489771 GCGGGGAGGTGGATGTGG 62.490 72.222 0.00 0.00 0.00 4.17
1122 1366 4.489771 GGCGGGGAGGTGGATGTG 62.490 72.222 0.00 0.00 0.00 3.21
1125 1369 4.760220 AAGGGCGGGGAGGTGGAT 62.760 66.667 0.00 0.00 0.00 3.41
1128 1372 4.410400 GACAAGGGCGGGGAGGTG 62.410 72.222 0.00 0.00 0.00 4.00
1136 1380 3.330720 AAGGGAGGGACAAGGGCG 61.331 66.667 0.00 0.00 0.00 6.13
1137 1381 2.677848 GAAGGGAGGGACAAGGGC 59.322 66.667 0.00 0.00 0.00 5.19
1138 1382 2.309504 GGGAAGGGAGGGACAAGGG 61.310 68.421 0.00 0.00 0.00 3.95
1139 1383 1.229984 AGGGAAGGGAGGGACAAGG 60.230 63.158 0.00 0.00 0.00 3.61
1140 1384 0.547712 TGAGGGAAGGGAGGGACAAG 60.548 60.000 0.00 0.00 0.00 3.16
1141 1385 0.840722 GTGAGGGAAGGGAGGGACAA 60.841 60.000 0.00 0.00 0.00 3.18
1142 1386 1.229529 GTGAGGGAAGGGAGGGACA 60.230 63.158 0.00 0.00 0.00 4.02
1143 1387 1.996187 GGTGAGGGAAGGGAGGGAC 60.996 68.421 0.00 0.00 0.00 4.46
1144 1388 2.454941 GGTGAGGGAAGGGAGGGA 59.545 66.667 0.00 0.00 0.00 4.20
1145 1389 2.692741 GGGTGAGGGAAGGGAGGG 60.693 72.222 0.00 0.00 0.00 4.30
1146 1390 1.690985 GAGGGTGAGGGAAGGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
1147 1391 1.690985 GGAGGGTGAGGGAAGGGAG 60.691 68.421 0.00 0.00 0.00 4.30
1148 1392 2.182858 GAGGAGGGTGAGGGAAGGGA 62.183 65.000 0.00 0.00 0.00 4.20
1149 1393 1.690985 GAGGAGGGTGAGGGAAGGG 60.691 68.421 0.00 0.00 0.00 3.95
1150 1394 0.689412 GAGAGGAGGGTGAGGGAAGG 60.689 65.000 0.00 0.00 0.00 3.46
1151 1395 0.689412 GGAGAGGAGGGTGAGGGAAG 60.689 65.000 0.00 0.00 0.00 3.46
1152 1396 1.156322 AGGAGAGGAGGGTGAGGGAA 61.156 60.000 0.00 0.00 0.00 3.97
1153 1397 1.547755 AGGAGAGGAGGGTGAGGGA 60.548 63.158 0.00 0.00 0.00 4.20
1154 1398 1.075600 GAGGAGAGGAGGGTGAGGG 60.076 68.421 0.00 0.00 0.00 4.30
1155 1399 1.075600 GGAGGAGAGGAGGGTGAGG 60.076 68.421 0.00 0.00 0.00 3.86
1156 1400 1.075600 GGGAGGAGAGGAGGGTGAG 60.076 68.421 0.00 0.00 0.00 3.51
1157 1401 2.637640 GGGGAGGAGAGGAGGGTGA 61.638 68.421 0.00 0.00 0.00 4.02
1158 1402 2.041405 GGGGAGGAGAGGAGGGTG 60.041 72.222 0.00 0.00 0.00 4.61
1159 1403 3.756783 CGGGGAGGAGAGGAGGGT 61.757 72.222 0.00 0.00 0.00 4.34
1160 1404 4.548513 CCGGGGAGGAGAGGAGGG 62.549 77.778 0.00 0.00 45.00 4.30
1188 1432 4.806339 AGGCGGGGGAAGAGGGAG 62.806 72.222 0.00 0.00 0.00 4.30
1189 1433 4.798682 GAGGCGGGGGAAGAGGGA 62.799 72.222 0.00 0.00 0.00 4.20
1643 1887 2.615288 AAGAGGGAGGCAAGGGGG 60.615 66.667 0.00 0.00 0.00 5.40
1814 2070 4.742649 TCGGCGAGCAGGGAGAGT 62.743 66.667 4.99 0.00 0.00 3.24
2171 2508 1.066143 ACCTCAACTATGGCCTCAACG 60.066 52.381 3.32 0.00 0.00 4.10
2229 2566 0.848735 ATGGCCACCAGATATGCAGT 59.151 50.000 8.16 0.00 36.75 4.40
2420 2757 2.954684 ATTCGTCAAGGCCCGAGCA 61.955 57.895 0.00 0.00 42.56 4.26
2490 2827 3.135348 CCTATCTTCATCACCTCCTGCAA 59.865 47.826 0.00 0.00 0.00 4.08
2510 2847 0.995024 CTCCAAGACCCATGTTCCCT 59.005 55.000 0.00 0.00 0.00 4.20
2567 2904 2.945008 CACAAGTGAAGCTTTCCTCACA 59.055 45.455 16.51 0.00 34.69 3.58
2570 2907 2.225255 GAGCACAAGTGAAGCTTTCCTC 59.775 50.000 0.00 0.00 39.02 3.71
2660 2997 1.339610 GTGACTAGCGGATCAGAGCAT 59.660 52.381 0.00 0.00 35.48 3.79
2774 3111 5.660417 ACTGGTCTCACTATCAATCATCAGT 59.340 40.000 0.00 0.00 0.00 3.41
2992 3329 3.251972 CAGTGGTCTCAGCTTTTTCTTCC 59.748 47.826 0.00 0.00 0.00 3.46
3442 3779 5.182001 GCAAGACTCCACTGTAACATGAAAT 59.818 40.000 0.00 0.00 0.00 2.17
3495 3832 0.947244 CAGAACACAGTTGCCAGACC 59.053 55.000 0.00 0.00 0.00 3.85
3591 3928 4.656112 AGTCCCACTATCACAAGGAATAGG 59.344 45.833 0.00 0.00 0.00 2.57
3658 3995 7.662258 TCAAAAACGTTCTTATATTCTGGGACA 59.338 33.333 0.00 0.00 0.00 4.02
3659 3996 7.961283 GTCAAAAACGTTCTTATATTCTGGGAC 59.039 37.037 0.00 0.00 0.00 4.46
3660 3997 7.662258 TGTCAAAAACGTTCTTATATTCTGGGA 59.338 33.333 0.00 0.00 0.00 4.37
3661 3998 7.749126 GTGTCAAAAACGTTCTTATATTCTGGG 59.251 37.037 0.00 0.00 0.00 4.45
3662 3999 8.504005 AGTGTCAAAAACGTTCTTATATTCTGG 58.496 33.333 0.00 0.00 0.00 3.86
3666 4003 9.769093 GCATAGTGTCAAAAACGTTCTTATATT 57.231 29.630 0.00 0.00 0.00 1.28
3667 4004 9.162764 AGCATAGTGTCAAAAACGTTCTTATAT 57.837 29.630 0.00 0.00 0.00 0.86
3668 4005 8.542497 AGCATAGTGTCAAAAACGTTCTTATA 57.458 30.769 0.00 0.00 0.00 0.98
3669 4006 7.435068 AGCATAGTGTCAAAAACGTTCTTAT 57.565 32.000 0.00 0.00 0.00 1.73
3670 4007 6.854496 AGCATAGTGTCAAAAACGTTCTTA 57.146 33.333 0.00 0.00 0.00 2.10
3671 4008 5.751243 AGCATAGTGTCAAAAACGTTCTT 57.249 34.783 0.00 0.00 0.00 2.52
3672 4009 6.467723 CTAGCATAGTGTCAAAAACGTTCT 57.532 37.500 0.00 0.00 32.85 3.01
3698 4035 9.609950 CGTCCCAAAATATAAGAACGTTTTTAA 57.390 29.630 14.41 5.85 0.00 1.52
3699 4036 8.235905 CCGTCCCAAAATATAAGAACGTTTTTA 58.764 33.333 13.02 13.02 0.00 1.52
3700 4037 7.040548 TCCGTCCCAAAATATAAGAACGTTTTT 60.041 33.333 9.22 9.22 0.00 1.94
3701 4038 6.430616 TCCGTCCCAAAATATAAGAACGTTTT 59.569 34.615 0.46 0.00 0.00 2.43
3702 4039 5.939296 TCCGTCCCAAAATATAAGAACGTTT 59.061 36.000 0.46 0.00 0.00 3.60
3703 4040 5.490159 TCCGTCCCAAAATATAAGAACGTT 58.510 37.500 0.00 0.00 0.00 3.99
3704 4041 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
3705 4042 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
3706 4043 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
3707 4044 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
3708 4045 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
3709 4046 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
3710 4047 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
3711 4048 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
3712 4049 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
3713 4050 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3714 4051 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3715 4052 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3716 4053 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3717 4054 1.835531 GAAATACTCCCTCCGTCCCAA 59.164 52.381 0.00 0.00 0.00 4.12
3718 4055 1.273381 TGAAATACTCCCTCCGTCCCA 60.273 52.381 0.00 0.00 0.00 4.37
3719 4056 1.492764 TGAAATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
3720 4057 4.262506 CCTTATGAAATACTCCCTCCGTCC 60.263 50.000 0.00 0.00 0.00 4.79
3721 4058 4.799917 GCCTTATGAAATACTCCCTCCGTC 60.800 50.000 0.00 0.00 0.00 4.79
3722 4059 3.071167 GCCTTATGAAATACTCCCTCCGT 59.929 47.826 0.00 0.00 0.00 4.69
3723 4060 3.557264 GGCCTTATGAAATACTCCCTCCG 60.557 52.174 0.00 0.00 0.00 4.63
3724 4061 3.653352 AGGCCTTATGAAATACTCCCTCC 59.347 47.826 0.00 0.00 0.00 4.30
3725 4062 4.984146 AGGCCTTATGAAATACTCCCTC 57.016 45.455 0.00 0.00 0.00 4.30
3726 4063 4.726825 TCAAGGCCTTATGAAATACTCCCT 59.273 41.667 20.00 0.00 0.00 4.20
3727 4064 5.048846 TCAAGGCCTTATGAAATACTCCC 57.951 43.478 20.00 0.00 0.00 4.30
3728 4065 6.547510 ACATTCAAGGCCTTATGAAATACTCC 59.452 38.462 27.71 0.00 38.88 3.85
3729 4066 7.573968 ACATTCAAGGCCTTATGAAATACTC 57.426 36.000 27.71 0.00 38.88 2.59
3730 4067 7.721399 CCTACATTCAAGGCCTTATGAAATACT 59.279 37.037 27.71 11.83 38.88 2.12
3731 4068 7.502561 ACCTACATTCAAGGCCTTATGAAATAC 59.497 37.037 27.71 0.00 38.88 1.89
3732 4069 7.582719 ACCTACATTCAAGGCCTTATGAAATA 58.417 34.615 27.71 18.78 38.88 1.40
3733 4070 6.435164 ACCTACATTCAAGGCCTTATGAAAT 58.565 36.000 27.71 18.69 38.88 2.17
3797 4134 5.871396 ATGATACCCAGACACGACTTATT 57.129 39.130 0.00 0.00 0.00 1.40
3898 4235 1.331214 CAGGGCCATTTTGTGACTGT 58.669 50.000 6.18 0.00 0.00 3.55
3945 4282 9.725019 AAATACTGCATTATCTTATGATCCGAA 57.275 29.630 0.00 0.00 34.32 4.30
3970 4307 6.616017 TGACAAATATCAAAGCAACGCATAA 58.384 32.000 0.00 0.00 0.00 1.90
4005 4343 4.637276 TGCAGAACTTCGGATAGACAAAA 58.363 39.130 0.00 0.00 0.00 2.44
4180 4518 1.134580 GTAGCAGAGCAAGGATGAGCA 60.135 52.381 0.00 0.00 0.00 4.26
4415 4754 7.592938 TGTGATGTTCCTTTTATGTAGCTTTG 58.407 34.615 0.00 0.00 0.00 2.77
4970 5317 7.093640 ACGATGTAACTGAGTTATTGAAGGGTA 60.094 37.037 8.46 0.00 30.49 3.69
5109 5460 5.105595 GCAAGGGGAATAATTCTATCATGCC 60.106 44.000 0.00 0.00 0.00 4.40
5173 5526 4.132336 GCTCATATTGGATCAAGCACTGA 58.868 43.478 0.00 0.00 38.81 3.41
5581 5936 2.352030 CGTTTGCCTCCGTACTACTTCA 60.352 50.000 0.00 0.00 0.00 3.02
5617 5972 4.099266 TGATAAAGCACCTGCAACAACTTT 59.901 37.500 0.00 8.81 45.16 2.66
5624 5979 5.243507 TGAAAGAATGATAAAGCACCTGCAA 59.756 36.000 0.00 0.00 45.16 4.08
5657 6012 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
5661 6016 4.351874 ACCATCTTATATTGTGGGACGG 57.648 45.455 0.00 0.00 36.05 4.79
5662 6017 6.073222 GCTAAACCATCTTATATTGTGGGACG 60.073 42.308 0.00 0.00 36.05 4.79
5685 6040 8.253113 CCACAATATAAGATGGTTTTTCAAGCT 58.747 33.333 0.00 0.00 0.00 3.74
5686 6041 7.492344 CCCACAATATAAGATGGTTTTTCAAGC 59.508 37.037 0.00 0.00 0.00 4.01
5688 6043 8.527810 GTCCCACAATATAAGATGGTTTTTCAA 58.472 33.333 0.00 0.00 0.00 2.69
5689 6044 7.148154 CGTCCCACAATATAAGATGGTTTTTCA 60.148 37.037 0.00 0.00 0.00 2.69
5691 6046 6.096282 CCGTCCCACAATATAAGATGGTTTTT 59.904 38.462 0.00 0.00 0.00 1.94
5697 6064 4.563580 CCCTCCGTCCCACAATATAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
6077 6451 3.475566 TGTCCTCTGTCTGAACTTTGG 57.524 47.619 0.00 0.00 0.00 3.28
6099 6473 4.109766 GTTTACCATATCGCAAAAAGGGC 58.890 43.478 0.00 0.00 0.00 5.19
6393 6768 1.430632 CCATGTGATCTGCCGCAAC 59.569 57.895 0.00 0.00 0.00 4.17
6556 6931 0.689412 TCCCGCCATCTACACCATCA 60.689 55.000 0.00 0.00 0.00 3.07
6559 6934 2.717044 CGTCCCGCCATCTACACCA 61.717 63.158 0.00 0.00 0.00 4.17
6927 7302 4.680237 CCTTGAGCACCGACCGCA 62.680 66.667 0.00 0.00 0.00 5.69
6967 7342 4.269523 ATGGTGTGCAGCGGTGGT 62.270 61.111 17.54 0.00 0.00 4.16
7057 7432 2.755876 TCGAGCCGCCTGACTGAT 60.756 61.111 0.00 0.00 0.00 2.90
7155 7530 1.530720 TCTACGTGTGCATGCAACAAG 59.469 47.619 24.58 23.87 0.00 3.16
7518 8076 2.818921 AGTTGGGCCATGCAGAAAATA 58.181 42.857 7.26 0.00 0.00 1.40
7519 8077 1.648116 AGTTGGGCCATGCAGAAAAT 58.352 45.000 7.26 0.00 0.00 1.82
7824 8586 3.788227 TCACCAAGGAAAGTAGCACAT 57.212 42.857 0.00 0.00 0.00 3.21
7839 8601 2.025510 TGTATGACATGGGCAATCACCA 60.026 45.455 0.00 0.00 43.22 4.17
7896 8658 5.694006 CCATTCATAAAACAAAAGAACGCCA 59.306 36.000 0.00 0.00 0.00 5.69
7937 8700 4.888038 TTGCTCATCAATGCACTGATAC 57.112 40.909 10.81 4.34 39.05 2.24
7990 8753 7.697291 CCGCTTAGATCTAAACGGTCTTATATC 59.303 40.741 34.16 2.35 44.94 1.63
8010 8773 7.045416 TCTGCAAAGAAATATAAGACCGCTTA 58.955 34.615 0.00 0.00 40.65 3.09
8012 8775 5.428253 TCTGCAAAGAAATATAAGACCGCT 58.572 37.500 0.00 0.00 0.00 5.52
8031 8809 5.303078 TCAAGTAGAGATGTATTCCCTCTGC 59.697 44.000 0.00 0.00 39.09 4.26
8064 8842 7.147141 TGGTCCAGAAGGTGAATGGATATAAAT 60.147 37.037 0.00 0.00 44.59 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.