Multiple sequence alignment - TraesCS5B01G492700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G492700 chr5B 100.000 3666 0 0 990 4655 660670524 660666859 0.000000e+00 6770.0
1 TraesCS5B01G492700 chr5B 100.000 749 0 0 1 749 660671513 660670765 0.000000e+00 1384.0
2 TraesCS5B01G492700 chr5B 100.000 137 0 0 4956 5092 660666558 660666422 2.350000e-63 254.0
3 TraesCS5B01G492700 chr5B 91.724 145 9 3 72 213 509333241 509333385 1.120000e-46 198.0
4 TraesCS5B01G492700 chr5B 93.878 49 3 0 23 71 9009618 9009666 1.970000e-09 75.0
5 TraesCS5B01G492700 chr5D 93.692 2568 77 30 1005 3519 525986061 525983526 0.000000e+00 3766.0
6 TraesCS5B01G492700 chr5D 91.866 627 18 11 3552 4177 525983401 525982807 0.000000e+00 845.0
7 TraesCS5B01G492700 chr5D 81.840 424 28 26 303 715 525986874 525986489 1.380000e-80 311.0
8 TraesCS5B01G492700 chr5D 84.444 270 10 16 4398 4655 525982398 525982149 2.370000e-58 237.0
9 TraesCS5B01G492700 chr5D 87.356 174 9 6 4228 4389 525982804 525982632 2.420000e-43 187.0
10 TraesCS5B01G492700 chr5D 87.603 121 7 3 4972 5091 525982045 525981932 3.200000e-27 134.0
11 TraesCS5B01G492700 chr5D 94.231 52 3 0 21 72 486836342 486836393 4.230000e-11 80.5
12 TraesCS5B01G492700 chr5D 94.118 51 3 0 22 72 421314560 421314610 1.520000e-10 78.7
13 TraesCS5B01G492700 chr5A 90.237 2571 113 58 1039 3519 653002288 652999766 0.000000e+00 3230.0
14 TraesCS5B01G492700 chr5A 83.218 864 54 43 3552 4389 652999603 652998805 0.000000e+00 708.0
15 TraesCS5B01G492700 chr5A 81.670 491 24 28 281 749 653002832 653002386 1.050000e-91 348.0
16 TraesCS5B01G492700 chr5A 86.538 260 11 6 4396 4655 652998579 652998344 1.090000e-66 265.0
17 TraesCS5B01G492700 chr5A 94.643 56 2 1 17 72 52281147 52281201 9.080000e-13 86.1
18 TraesCS5B01G492700 chr3B 83.392 283 34 5 1461 1731 718349836 718350117 3.040000e-62 250.0
19 TraesCS5B01G492700 chr1D 90.566 159 15 0 1701 1859 15338649 15338807 1.440000e-50 211.0
20 TraesCS5B01G492700 chr1D 91.034 145 10 3 72 213 367239821 367239677 5.200000e-45 193.0
21 TraesCS5B01G492700 chr1A 90.566 159 15 0 1701 1859 16426116 16426274 1.440000e-50 211.0
22 TraesCS5B01G492700 chr1A 91.781 146 8 4 72 214 333927646 333927502 3.110000e-47 200.0
23 TraesCS5B01G492700 chr1B 88.679 159 18 0 1701 1859 22048032 22047874 1.450000e-45 195.0
24 TraesCS5B01G492700 chrUn 91.034 145 10 3 72 213 97802974 97802830 5.200000e-45 193.0
25 TraesCS5B01G492700 chr6B 91.034 145 10 3 72 213 127717347 127717491 5.200000e-45 193.0
26 TraesCS5B01G492700 chr6B 91.034 145 10 3 72 213 573763680 573763536 5.200000e-45 193.0
27 TraesCS5B01G492700 chr4B 91.034 145 10 3 72 213 15911313 15911169 5.200000e-45 193.0
28 TraesCS5B01G492700 chr4B 91.034 145 10 3 72 213 477639530 477639674 5.200000e-45 193.0
29 TraesCS5B01G492700 chr3A 91.034 145 10 3 72 213 109409336 109409192 5.200000e-45 193.0
30 TraesCS5B01G492700 chr3A 86.667 90 8 4 1451 1538 720625823 720625736 4.200000e-16 97.1
31 TraesCS5B01G492700 chr3A 78.698 169 18 7 1005 1166 720625976 720625819 4.200000e-16 97.1
32 TraesCS5B01G492700 chr3A 91.071 56 3 2 17 71 691088968 691088914 1.970000e-09 75.0
33 TraesCS5B01G492700 chr3D 96.491 57 2 0 1193 1249 454407119 454407175 1.510000e-15 95.3
34 TraesCS5B01G492700 chr3D 95.745 47 2 0 26 72 582105059 582105013 5.470000e-10 76.8
35 TraesCS5B01G492700 chr3D 94.000 50 2 1 24 72 483190896 483190945 1.970000e-09 75.0
36 TraesCS5B01G492700 chr6D 97.826 46 1 0 27 72 77826319 77826364 4.230000e-11 80.5
37 TraesCS5B01G492700 chr2B 94.118 51 2 1 23 72 651987078 651987128 5.470000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G492700 chr5B 660666422 660671513 5091 True 2802.666667 6770 100.000000 1 5092 3 chr5B.!!$R1 5091
1 TraesCS5B01G492700 chr5D 525981932 525986874 4942 True 913.333333 3766 87.800167 303 5091 6 chr5D.!!$R1 4788
2 TraesCS5B01G492700 chr5A 652998344 653002832 4488 True 1137.750000 3230 85.415750 281 4655 4 chr5A.!!$R1 4374

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.028505 GCGAGCACATTGCCATACAG 59.971 55.000 0.00 0.00 46.52 2.74 F
325 330 0.477202 ATGGATGGATGGGAGGGAGG 60.477 60.000 0.00 0.00 0.00 4.30 F
548 578 0.683504 GAGTCAACGGCTAGGGAGGA 60.684 60.000 0.00 0.00 0.00 3.71 F
549 579 0.684805 AGTCAACGGCTAGGGAGGAG 60.685 60.000 0.00 0.00 0.00 3.69 F
2570 2804 1.372683 GCTCAAGGTGACCAGAGCA 59.627 57.895 31.16 2.19 46.11 4.26 F
3208 3532 0.027979 CGGTGAACTTGTGTGTGCAG 59.972 55.000 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 2016 3.644399 GAGGAAGTCGGTGGCGTCC 62.644 68.421 0.00 0.0 35.26 4.79 R
2301 2520 3.590824 TCGCTGATGTGCTCGAGA 58.409 55.556 18.75 0.0 0.00 4.04 R
2449 2683 3.118445 TCGGCACAGATAAACCATCATCA 60.118 43.478 0.00 0.0 35.96 3.07 R
2645 2879 7.334421 GCAGACTTCATAATCACTTAAGGAACA 59.666 37.037 7.53 0.0 0.00 3.18 R
3521 3845 0.033208 AATGCATGTTCGACCCCCAT 60.033 50.000 0.00 0.0 0.00 4.00 R
5050 5817 0.178926 TCACCCACCGTTCCTCCTAA 60.179 55.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.682128 GTCTTCTCTTAAGACACTTCTACATG 57.318 38.462 11.92 0.00 44.48 3.21
26 27 8.301002 GTCTTCTCTTAAGACACTTCTACATGT 58.699 37.037 2.69 2.69 44.48 3.21
27 28 9.516546 TCTTCTCTTAAGACACTTCTACATGTA 57.483 33.333 5.25 5.25 0.00 2.29
28 29 9.562583 CTTCTCTTAAGACACTTCTACATGTAC 57.437 37.037 0.08 0.00 0.00 2.90
29 30 8.865420 TCTCTTAAGACACTTCTACATGTACT 57.135 34.615 0.08 0.00 0.00 2.73
30 31 8.948145 TCTCTTAAGACACTTCTACATGTACTC 58.052 37.037 0.08 0.00 0.00 2.59
31 32 8.053026 TCTTAAGACACTTCTACATGTACTCC 57.947 38.462 0.08 0.00 0.00 3.85
32 33 5.662674 AAGACACTTCTACATGTACTCCC 57.337 43.478 0.08 0.00 0.00 4.30
33 34 4.936802 AGACACTTCTACATGTACTCCCT 58.063 43.478 0.08 0.00 0.00 4.20
34 35 4.951094 AGACACTTCTACATGTACTCCCTC 59.049 45.833 0.08 0.00 0.00 4.30
35 36 4.024670 ACACTTCTACATGTACTCCCTCC 58.975 47.826 0.08 0.00 0.00 4.30
36 37 4.264442 ACACTTCTACATGTACTCCCTCCT 60.264 45.833 0.08 0.00 0.00 3.69
37 38 4.098654 CACTTCTACATGTACTCCCTCCTG 59.901 50.000 0.08 0.00 0.00 3.86
38 39 4.264442 ACTTCTACATGTACTCCCTCCTGT 60.264 45.833 0.08 0.00 0.00 4.00
39 40 3.899726 TCTACATGTACTCCCTCCTGTC 58.100 50.000 0.08 0.00 0.00 3.51
40 41 2.623418 ACATGTACTCCCTCCTGTCA 57.377 50.000 0.00 0.00 0.00 3.58
41 42 3.121929 ACATGTACTCCCTCCTGTCAT 57.878 47.619 0.00 0.00 0.00 3.06
42 43 3.454858 ACATGTACTCCCTCCTGTCATT 58.545 45.455 0.00 0.00 0.00 2.57
43 44 3.846588 ACATGTACTCCCTCCTGTCATTT 59.153 43.478 0.00 0.00 0.00 2.32
44 45 4.289672 ACATGTACTCCCTCCTGTCATTTT 59.710 41.667 0.00 0.00 0.00 1.82
45 46 4.993705 TGTACTCCCTCCTGTCATTTTT 57.006 40.909 0.00 0.00 0.00 1.94
46 47 6.012858 ACATGTACTCCCTCCTGTCATTTTTA 60.013 38.462 0.00 0.00 0.00 1.52
47 48 5.801380 TGTACTCCCTCCTGTCATTTTTAC 58.199 41.667 0.00 0.00 0.00 2.01
48 49 5.546499 TGTACTCCCTCCTGTCATTTTTACT 59.454 40.000 0.00 0.00 0.00 2.24
49 50 5.167303 ACTCCCTCCTGTCATTTTTACTC 57.833 43.478 0.00 0.00 0.00 2.59
50 51 4.019231 ACTCCCTCCTGTCATTTTTACTCC 60.019 45.833 0.00 0.00 0.00 3.85
51 52 3.055385 TCCCTCCTGTCATTTTTACTCCG 60.055 47.826 0.00 0.00 0.00 4.63
52 53 2.678336 CCTCCTGTCATTTTTACTCCGC 59.322 50.000 0.00 0.00 0.00 5.54
53 54 3.334691 CTCCTGTCATTTTTACTCCGCA 58.665 45.455 0.00 0.00 0.00 5.69
54 55 3.941483 CTCCTGTCATTTTTACTCCGCAT 59.059 43.478 0.00 0.00 0.00 4.73
55 56 5.092554 TCCTGTCATTTTTACTCCGCATA 57.907 39.130 0.00 0.00 0.00 3.14
56 57 5.680619 TCCTGTCATTTTTACTCCGCATAT 58.319 37.500 0.00 0.00 0.00 1.78
57 58 6.119536 TCCTGTCATTTTTACTCCGCATATT 58.880 36.000 0.00 0.00 0.00 1.28
58 59 7.276658 TCCTGTCATTTTTACTCCGCATATTA 58.723 34.615 0.00 0.00 0.00 0.98
59 60 7.441157 TCCTGTCATTTTTACTCCGCATATTAG 59.559 37.037 0.00 0.00 0.00 1.73
60 61 7.441157 CCTGTCATTTTTACTCCGCATATTAGA 59.559 37.037 0.00 0.00 0.00 2.10
61 62 8.902540 TGTCATTTTTACTCCGCATATTAGAT 57.097 30.769 0.00 0.00 0.00 1.98
62 63 9.337396 TGTCATTTTTACTCCGCATATTAGATT 57.663 29.630 0.00 0.00 0.00 2.40
65 66 9.950680 CATTTTTACTCCGCATATTAGATTTGT 57.049 29.630 0.00 0.00 0.00 2.83
66 67 9.950680 ATTTTTACTCCGCATATTAGATTTGTG 57.049 29.630 0.00 0.00 0.00 3.33
67 68 8.500753 TTTTACTCCGCATATTAGATTTGTGT 57.499 30.769 0.00 0.00 0.00 3.72
68 69 7.709269 TTACTCCGCATATTAGATTTGTGTC 57.291 36.000 0.00 0.00 0.00 3.67
69 70 5.670485 ACTCCGCATATTAGATTTGTGTCA 58.330 37.500 0.00 0.00 0.00 3.58
70 71 6.112734 ACTCCGCATATTAGATTTGTGTCAA 58.887 36.000 0.00 0.00 0.00 3.18
71 72 6.258727 ACTCCGCATATTAGATTTGTGTCAAG 59.741 38.462 0.00 0.00 0.00 3.02
72 73 5.007626 TCCGCATATTAGATTTGTGTCAAGC 59.992 40.000 0.00 0.00 0.00 4.01
73 74 5.207768 CGCATATTAGATTTGTGTCAAGCC 58.792 41.667 0.00 0.00 0.00 4.35
74 75 5.523369 GCATATTAGATTTGTGTCAAGCCC 58.477 41.667 0.00 0.00 0.00 5.19
75 76 5.507985 GCATATTAGATTTGTGTCAAGCCCC 60.508 44.000 0.00 0.00 0.00 5.80
76 77 3.517296 TTAGATTTGTGTCAAGCCCCA 57.483 42.857 0.00 0.00 0.00 4.96
77 78 2.610438 AGATTTGTGTCAAGCCCCAT 57.390 45.000 0.00 0.00 0.00 4.00
78 79 2.173519 AGATTTGTGTCAAGCCCCATG 58.826 47.619 0.00 0.00 0.00 3.66
79 80 1.205417 GATTTGTGTCAAGCCCCATGG 59.795 52.381 4.14 4.14 0.00 3.66
80 81 0.105760 TTTGTGTCAAGCCCCATGGT 60.106 50.000 11.73 0.00 0.00 3.55
81 82 0.827089 TTGTGTCAAGCCCCATGGTG 60.827 55.000 11.73 0.00 0.00 4.17
82 83 1.228552 GTGTCAAGCCCCATGGTGT 60.229 57.895 11.73 0.00 0.00 4.16
83 84 0.827507 GTGTCAAGCCCCATGGTGTT 60.828 55.000 11.73 0.00 0.00 3.32
84 85 0.827089 TGTCAAGCCCCATGGTGTTG 60.827 55.000 11.73 10.91 0.00 3.33
85 86 0.827507 GTCAAGCCCCATGGTGTTGT 60.828 55.000 11.73 0.00 32.48 3.32
86 87 0.105760 TCAAGCCCCATGGTGTTGTT 60.106 50.000 11.73 0.00 32.48 2.83
87 88 0.758123 CAAGCCCCATGGTGTTGTTT 59.242 50.000 11.73 0.00 0.00 2.83
88 89 0.758123 AAGCCCCATGGTGTTGTTTG 59.242 50.000 11.73 0.00 0.00 2.93
89 90 1.120795 AGCCCCATGGTGTTGTTTGG 61.121 55.000 11.73 2.83 0.00 3.28
90 91 1.406860 GCCCCATGGTGTTGTTTGGT 61.407 55.000 11.73 0.00 0.00 3.67
91 92 1.127343 CCCCATGGTGTTGTTTGGTT 58.873 50.000 11.73 0.00 0.00 3.67
92 93 1.202627 CCCCATGGTGTTGTTTGGTTG 60.203 52.381 11.73 0.00 0.00 3.77
93 94 1.484240 CCCATGGTGTTGTTTGGTTGT 59.516 47.619 11.73 0.00 0.00 3.32
94 95 2.093235 CCCATGGTGTTGTTTGGTTGTT 60.093 45.455 11.73 0.00 0.00 2.83
95 96 3.133003 CCCATGGTGTTGTTTGGTTGTTA 59.867 43.478 11.73 0.00 0.00 2.41
96 97 4.202305 CCCATGGTGTTGTTTGGTTGTTAT 60.202 41.667 11.73 0.00 0.00 1.89
97 98 5.363939 CCATGGTGTTGTTTGGTTGTTATT 58.636 37.500 2.57 0.00 0.00 1.40
98 99 5.819901 CCATGGTGTTGTTTGGTTGTTATTT 59.180 36.000 2.57 0.00 0.00 1.40
99 100 6.317391 CCATGGTGTTGTTTGGTTGTTATTTT 59.683 34.615 2.57 0.00 0.00 1.82
100 101 7.148171 CCATGGTGTTGTTTGGTTGTTATTTTT 60.148 33.333 2.57 0.00 0.00 1.94
101 102 7.365840 TGGTGTTGTTTGGTTGTTATTTTTC 57.634 32.000 0.00 0.00 0.00 2.29
102 103 7.162082 TGGTGTTGTTTGGTTGTTATTTTTCT 58.838 30.769 0.00 0.00 0.00 2.52
103 104 8.311836 TGGTGTTGTTTGGTTGTTATTTTTCTA 58.688 29.630 0.00 0.00 0.00 2.10
104 105 9.320352 GGTGTTGTTTGGTTGTTATTTTTCTAT 57.680 29.630 0.00 0.00 0.00 1.98
152 153 9.603189 TTTAATAATCTCTAGGAAGGGACTAGG 57.397 37.037 0.00 0.00 38.49 3.02
153 154 4.479156 AATCTCTAGGAAGGGACTAGGG 57.521 50.000 0.00 0.00 38.49 3.53
154 155 1.499870 TCTCTAGGAAGGGACTAGGGC 59.500 57.143 0.00 0.00 38.49 5.19
155 156 1.501604 CTCTAGGAAGGGACTAGGGCT 59.498 57.143 0.00 0.00 38.49 5.19
156 157 1.938069 TCTAGGAAGGGACTAGGGCTT 59.062 52.381 0.00 0.00 38.49 4.35
157 158 2.318207 TCTAGGAAGGGACTAGGGCTTT 59.682 50.000 0.00 0.00 38.49 3.51
158 159 2.061264 AGGAAGGGACTAGGGCTTTT 57.939 50.000 0.00 0.00 38.49 2.27
159 160 2.359243 AGGAAGGGACTAGGGCTTTTT 58.641 47.619 0.00 0.00 38.49 1.94
160 161 3.538387 AGGAAGGGACTAGGGCTTTTTA 58.462 45.455 0.00 0.00 38.49 1.52
161 162 3.523972 AGGAAGGGACTAGGGCTTTTTAG 59.476 47.826 0.00 0.00 38.49 1.85
162 163 3.266254 GGAAGGGACTAGGGCTTTTTAGT 59.734 47.826 0.00 0.00 38.49 2.24
163 164 4.515361 GAAGGGACTAGGGCTTTTTAGTC 58.485 47.826 0.00 3.65 43.14 2.59
168 169 5.099042 GACTAGGGCTTTTTAGTCCATGA 57.901 43.478 0.00 0.00 39.76 3.07
169 170 5.497474 GACTAGGGCTTTTTAGTCCATGAA 58.503 41.667 0.00 0.00 39.76 2.57
170 171 5.887754 ACTAGGGCTTTTTAGTCCATGAAA 58.112 37.500 0.00 0.00 35.66 2.69
171 172 6.311735 ACTAGGGCTTTTTAGTCCATGAAAA 58.688 36.000 0.00 0.00 35.66 2.29
172 173 5.468540 AGGGCTTTTTAGTCCATGAAAAC 57.531 39.130 0.00 0.00 35.66 2.43
173 174 4.898861 AGGGCTTTTTAGTCCATGAAAACA 59.101 37.500 0.00 0.00 35.66 2.83
174 175 5.365314 AGGGCTTTTTAGTCCATGAAAACAA 59.635 36.000 0.00 0.00 35.66 2.83
175 176 6.052360 GGGCTTTTTAGTCCATGAAAACAAA 58.948 36.000 0.00 0.00 32.88 2.83
176 177 6.018262 GGGCTTTTTAGTCCATGAAAACAAAC 60.018 38.462 0.00 0.00 32.88 2.93
177 178 6.536941 GGCTTTTTAGTCCATGAAAACAAACA 59.463 34.615 0.00 0.00 0.00 2.83
178 179 7.254421 GGCTTTTTAGTCCATGAAAACAAACAG 60.254 37.037 0.00 0.00 0.00 3.16
179 180 7.254421 GCTTTTTAGTCCATGAAAACAAACAGG 60.254 37.037 0.00 0.00 0.00 4.00
180 181 5.782893 TTAGTCCATGAAAACAAACAGGG 57.217 39.130 0.00 0.00 38.99 4.45
181 182 2.965147 AGTCCATGAAAACAAACAGGGG 59.035 45.455 0.00 0.00 38.31 4.79
182 183 2.037121 GTCCATGAAAACAAACAGGGGG 59.963 50.000 0.00 0.00 38.31 5.40
200 201 4.180377 GGGGGACTTTTTAGGATTAGGG 57.820 50.000 0.00 0.00 0.00 3.53
201 202 3.789840 GGGGGACTTTTTAGGATTAGGGA 59.210 47.826 0.00 0.00 0.00 4.20
202 203 4.386088 GGGGGACTTTTTAGGATTAGGGAC 60.386 50.000 0.00 0.00 0.00 4.46
203 204 4.477581 GGGGACTTTTTAGGATTAGGGACT 59.522 45.833 0.00 0.00 46.37 3.85
204 205 5.044328 GGGGACTTTTTAGGATTAGGGACTT 60.044 44.000 0.00 0.00 41.75 3.01
205 206 6.491383 GGGACTTTTTAGGATTAGGGACTTT 58.509 40.000 0.00 0.00 41.75 2.66
206 207 6.952358 GGGACTTTTTAGGATTAGGGACTTTT 59.048 38.462 0.00 0.00 41.75 2.27
207 208 7.453752 GGGACTTTTTAGGATTAGGGACTTTTT 59.546 37.037 0.00 0.00 41.75 1.94
208 209 9.524496 GGACTTTTTAGGATTAGGGACTTTTTA 57.476 33.333 0.00 0.00 41.75 1.52
216 217 8.637196 AGGATTAGGGACTTTTTAGTTGAAAG 57.363 34.615 0.00 0.00 41.75 2.62
217 218 8.225416 AGGATTAGGGACTTTTTAGTTGAAAGT 58.775 33.333 2.20 2.20 46.78 2.66
218 219 8.857098 GGATTAGGGACTTTTTAGTTGAAAGTT 58.143 33.333 4.02 0.00 44.81 2.66
221 222 6.792326 AGGGACTTTTTAGTTGAAAGTTTCG 58.208 36.000 10.92 0.00 44.81 3.46
222 223 5.975344 GGGACTTTTTAGTTGAAAGTTTCGG 59.025 40.000 10.92 0.00 44.81 4.30
223 224 6.183360 GGGACTTTTTAGTTGAAAGTTTCGGA 60.183 38.462 10.92 0.00 44.81 4.55
224 225 7.252708 GGACTTTTTAGTTGAAAGTTTCGGAA 58.747 34.615 10.92 0.00 44.81 4.30
225 226 7.431376 GGACTTTTTAGTTGAAAGTTTCGGAAG 59.569 37.037 10.92 8.70 44.81 3.46
226 227 8.047413 ACTTTTTAGTTGAAAGTTTCGGAAGA 57.953 30.769 10.92 0.00 42.90 2.87
227 228 8.182227 ACTTTTTAGTTGAAAGTTTCGGAAGAG 58.818 33.333 10.92 7.74 42.90 2.85
228 229 5.668558 TTAGTTGAAAGTTTCGGAAGAGC 57.331 39.130 10.92 0.00 43.69 4.09
229 230 2.879026 AGTTGAAAGTTTCGGAAGAGCC 59.121 45.455 10.92 0.00 43.69 4.70
253 254 2.097444 GCGAGCACATTGCCATACA 58.903 52.632 0.00 0.00 46.52 2.29
254 255 0.028505 GCGAGCACATTGCCATACAG 59.971 55.000 0.00 0.00 46.52 2.74
255 256 1.372582 CGAGCACATTGCCATACAGT 58.627 50.000 0.00 0.00 46.52 3.55
256 257 2.549926 CGAGCACATTGCCATACAGTA 58.450 47.619 0.00 0.00 46.52 2.74
257 258 2.935849 CGAGCACATTGCCATACAGTAA 59.064 45.455 0.00 0.00 46.52 2.24
258 259 3.373748 CGAGCACATTGCCATACAGTAAA 59.626 43.478 0.00 0.00 46.52 2.01
259 260 4.662145 GAGCACATTGCCATACAGTAAAC 58.338 43.478 0.00 0.00 46.52 2.01
260 261 3.126858 AGCACATTGCCATACAGTAAACG 59.873 43.478 0.00 0.00 46.52 3.60
261 262 3.126171 GCACATTGCCATACAGTAAACGA 59.874 43.478 0.00 0.00 37.42 3.85
262 263 4.727734 GCACATTGCCATACAGTAAACGAG 60.728 45.833 0.00 0.00 37.42 4.18
263 264 3.374058 ACATTGCCATACAGTAAACGAGC 59.626 43.478 0.00 0.00 0.00 5.03
264 265 2.753055 TGCCATACAGTAAACGAGCA 57.247 45.000 0.00 0.00 0.00 4.26
265 266 3.260475 TGCCATACAGTAAACGAGCAT 57.740 42.857 0.00 0.00 0.00 3.79
266 267 2.935849 TGCCATACAGTAAACGAGCATG 59.064 45.455 0.00 0.00 0.00 4.06
267 268 2.287915 GCCATACAGTAAACGAGCATGG 59.712 50.000 0.00 0.00 35.59 3.66
268 269 3.531538 CCATACAGTAAACGAGCATGGT 58.468 45.455 0.00 0.00 0.00 3.55
269 270 3.938963 CCATACAGTAAACGAGCATGGTT 59.061 43.478 0.00 0.00 39.28 3.67
270 271 4.034048 CCATACAGTAAACGAGCATGGTTC 59.966 45.833 0.00 0.00 35.39 3.62
271 272 2.423577 ACAGTAAACGAGCATGGTTCC 58.576 47.619 0.00 0.00 35.39 3.62
272 273 1.393539 CAGTAAACGAGCATGGTTCCG 59.606 52.381 0.00 1.11 35.39 4.30
273 274 1.001633 AGTAAACGAGCATGGTTCCGT 59.998 47.619 5.88 5.88 35.39 4.69
274 275 1.802365 GTAAACGAGCATGGTTCCGTT 59.198 47.619 15.96 15.96 45.56 4.44
275 276 2.172851 AAACGAGCATGGTTCCGTTA 57.827 45.000 20.28 0.00 43.28 3.18
276 277 2.172851 AACGAGCATGGTTCCGTTAA 57.827 45.000 19.05 0.00 42.44 2.01
277 278 2.172851 ACGAGCATGGTTCCGTTAAA 57.827 45.000 5.88 0.00 30.41 1.52
278 279 2.073816 ACGAGCATGGTTCCGTTAAAG 58.926 47.619 5.88 0.00 30.41 1.85
279 280 2.289195 ACGAGCATGGTTCCGTTAAAGA 60.289 45.455 5.88 0.00 30.41 2.52
292 293 9.687210 GGTTCCGTTAAAGATTTGAACTAAAAT 57.313 29.630 0.00 0.00 34.15 1.82
321 322 3.139025 ACTTGTTATGGATGGATGGGAGG 59.861 47.826 0.00 0.00 0.00 4.30
325 330 0.477202 ATGGATGGATGGGAGGGAGG 60.477 60.000 0.00 0.00 0.00 4.30
331 336 4.523282 ATGGGAGGGAGGGGGAGC 62.523 72.222 0.00 0.00 0.00 4.70
407 422 4.736896 GTCCCCTGCCGTCGTCAC 62.737 72.222 0.00 0.00 0.00 3.67
515 538 4.803426 CTCACCCAGAGCGGACGC 62.803 72.222 8.91 8.91 37.59 5.19
547 577 1.817209 GAGTCAACGGCTAGGGAGG 59.183 63.158 0.00 0.00 0.00 4.30
548 578 0.683504 GAGTCAACGGCTAGGGAGGA 60.684 60.000 0.00 0.00 0.00 3.71
549 579 0.684805 AGTCAACGGCTAGGGAGGAG 60.685 60.000 0.00 0.00 0.00 3.69
559 589 4.565850 GGGAGGAGGGGGAGCGAT 62.566 72.222 0.00 0.00 0.00 4.58
712 743 1.985116 GTCAACTCTCCCCTCCGCT 60.985 63.158 0.00 0.00 0.00 5.52
1179 1377 2.499685 CACTGCTACTACCCCGCC 59.500 66.667 0.00 0.00 0.00 6.13
1698 1911 3.728373 GGCGGGGACTCCAATGGT 61.728 66.667 0.00 0.00 34.36 3.55
1916 2129 2.903357 CTCAGCGCCCAGTACCAT 59.097 61.111 2.29 0.00 0.00 3.55
2055 2274 3.251509 TGCTCCAGCCTGAAGCCA 61.252 61.111 0.00 0.00 45.47 4.75
2187 2406 3.735037 GATGGTCGGCGAGTTCCCC 62.735 68.421 11.20 8.39 0.00 4.81
2301 2520 3.050703 GACAATGGACAGCGTCGAT 57.949 52.632 0.00 0.00 32.63 3.59
2338 2557 2.347490 GCTCCTTGGACGGCTTGA 59.653 61.111 0.00 0.00 0.00 3.02
2376 2595 1.520342 GCAGCTCACCTCGGATCAC 60.520 63.158 0.00 0.00 0.00 3.06
2444 2678 5.998454 ATTGAGTGTCTGTTCTTTGTCTG 57.002 39.130 0.00 0.00 0.00 3.51
2445 2679 4.736126 TGAGTGTCTGTTCTTTGTCTGA 57.264 40.909 0.00 0.00 0.00 3.27
2446 2680 5.084818 TGAGTGTCTGTTCTTTGTCTGAA 57.915 39.130 0.00 0.00 0.00 3.02
2447 2681 5.674525 TGAGTGTCTGTTCTTTGTCTGAAT 58.325 37.500 0.00 0.00 0.00 2.57
2448 2682 5.755375 TGAGTGTCTGTTCTTTGTCTGAATC 59.245 40.000 0.00 0.00 0.00 2.52
2449 2683 5.923204 AGTGTCTGTTCTTTGTCTGAATCT 58.077 37.500 0.00 0.00 0.00 2.40
2570 2804 1.372683 GCTCAAGGTGACCAGAGCA 59.627 57.895 31.16 2.19 46.11 4.26
2597 2831 2.223745 GCCGGTTTCTTGAAACAGGTA 58.776 47.619 30.67 0.00 45.66 3.08
2643 2877 8.341173 CAGTTTTTGGCATAAAAAGTTTGCATA 58.659 29.630 12.92 0.00 38.12 3.14
2644 2878 9.065798 AGTTTTTGGCATAAAAAGTTTGCATAT 57.934 25.926 4.66 0.00 38.12 1.78
2645 2879 9.676195 GTTTTTGGCATAAAAAGTTTGCATATT 57.324 25.926 4.66 0.00 38.12 1.28
2646 2880 9.674824 TTTTTGGCATAAAAAGTTTGCATATTG 57.325 25.926 0.40 0.00 38.12 1.90
2647 2881 7.976135 TTGGCATAAAAAGTTTGCATATTGT 57.024 28.000 0.00 0.00 38.12 2.71
2660 2894 8.806146 AGTTTGCATATTGTTCCTTAAGTGATT 58.194 29.630 0.97 0.00 0.00 2.57
2690 2947 6.820656 AGTCTGCAATTGGTTAGATGAACTAG 59.179 38.462 7.72 0.00 38.21 2.57
2762 3026 2.770164 AGCTAGTCATGTGTCCCAAC 57.230 50.000 0.00 0.00 0.00 3.77
2777 3041 7.377398 TGTGTCCCAACTAATTCAATGAAATG 58.623 34.615 0.00 0.00 0.00 2.32
2827 3091 8.981724 ATGTTGAGAAATCACAAAGATTGATG 57.018 30.769 0.00 0.00 46.09 3.07
2873 3137 9.360093 CACTTTTGGTCAACACATAACTTAAAA 57.640 29.630 0.00 0.00 0.00 1.52
2880 3144 7.326063 GGTCAACACATAACTTAAAAGTCATGC 59.674 37.037 5.99 0.00 38.05 4.06
2916 3196 1.949257 AAAAAGAGCAGGCGTTCCG 59.051 52.632 0.00 0.00 37.47 4.30
2957 3238 4.478203 TGAATCCCCTGTCAATTCAAACA 58.522 39.130 0.00 0.00 36.69 2.83
2958 3239 4.898265 TGAATCCCCTGTCAATTCAAACAA 59.102 37.500 0.00 0.00 36.69 2.83
2959 3240 5.365025 TGAATCCCCTGTCAATTCAAACAAA 59.635 36.000 0.00 0.00 36.69 2.83
2960 3241 4.664150 TCCCCTGTCAATTCAAACAAAC 57.336 40.909 0.00 0.00 0.00 2.93
2961 3242 4.285863 TCCCCTGTCAATTCAAACAAACT 58.714 39.130 0.00 0.00 0.00 2.66
2962 3243 4.340950 TCCCCTGTCAATTCAAACAAACTC 59.659 41.667 0.00 0.00 0.00 3.01
3035 3316 4.841813 TGGACACCATAGACTAACTTTGGA 59.158 41.667 11.86 0.00 46.05 3.53
3052 3333 1.681793 TGGACGGCGGAATTTTTCAAA 59.318 42.857 13.24 0.00 0.00 2.69
3053 3334 2.287909 TGGACGGCGGAATTTTTCAAAG 60.288 45.455 13.24 0.00 0.00 2.77
3054 3335 1.719246 GACGGCGGAATTTTTCAAAGC 59.281 47.619 13.24 0.00 0.00 3.51
3055 3336 1.067821 ACGGCGGAATTTTTCAAAGCA 59.932 42.857 13.24 0.00 0.00 3.91
3056 3337 2.288763 ACGGCGGAATTTTTCAAAGCAT 60.289 40.909 13.24 0.00 0.00 3.79
3057 3338 2.092524 CGGCGGAATTTTTCAAAGCATG 59.907 45.455 0.00 0.00 0.00 4.06
3058 3339 3.324993 GGCGGAATTTTTCAAAGCATGA 58.675 40.909 0.00 0.00 35.85 3.07
3059 3340 3.123453 GGCGGAATTTTTCAAAGCATGAC 59.877 43.478 0.00 0.00 37.92 3.06
3060 3341 3.989817 GCGGAATTTTTCAAAGCATGACT 59.010 39.130 0.00 0.00 37.92 3.41
3061 3342 5.160641 GCGGAATTTTTCAAAGCATGACTA 58.839 37.500 0.00 0.00 37.92 2.59
3062 3343 5.807011 GCGGAATTTTTCAAAGCATGACTAT 59.193 36.000 0.00 0.00 37.92 2.12
3063 3344 6.311200 GCGGAATTTTTCAAAGCATGACTATT 59.689 34.615 0.00 0.00 37.92 1.73
3064 3345 7.669098 CGGAATTTTTCAAAGCATGACTATTG 58.331 34.615 0.00 0.00 37.92 1.90
3065 3346 7.541783 CGGAATTTTTCAAAGCATGACTATTGA 59.458 33.333 0.00 0.00 37.92 2.57
3066 3347 9.374838 GGAATTTTTCAAAGCATGACTATTGAT 57.625 29.630 0.00 0.00 37.92 2.57
3105 3406 2.663520 CACCGCGTGTACAGCCAA 60.664 61.111 4.92 0.00 0.00 4.52
3112 3417 1.060713 CGTGTACAGCCAAGTCGAAG 58.939 55.000 0.00 0.00 0.00 3.79
3113 3418 1.429463 GTGTACAGCCAAGTCGAAGG 58.571 55.000 0.00 0.00 0.00 3.46
3129 3434 2.799917 CGAAGGATTGTAGGAGAAGCCG 60.800 54.545 0.00 0.00 43.43 5.52
3145 3450 2.354401 CCGCTGCTCTCCCAGAGAA 61.354 63.158 4.65 0.00 45.07 2.87
3166 3475 3.741249 AGAGAAAACGAGGGTTCCTTTC 58.259 45.455 0.00 0.00 34.62 2.62
3189 3498 1.388547 TGTGTCCAAGTGCAAGGAAC 58.611 50.000 5.46 7.19 35.29 3.62
3202 3526 2.014128 CAAGGAACGGTGAACTTGTGT 58.986 47.619 10.00 0.00 36.47 3.72
3203 3527 1.663695 AGGAACGGTGAACTTGTGTG 58.336 50.000 0.00 0.00 0.00 3.82
3204 3528 1.065709 AGGAACGGTGAACTTGTGTGT 60.066 47.619 0.00 0.00 0.00 3.72
3205 3529 1.063469 GGAACGGTGAACTTGTGTGTG 59.937 52.381 0.00 0.00 0.00 3.82
3206 3530 0.450184 AACGGTGAACTTGTGTGTGC 59.550 50.000 0.00 0.00 0.00 4.57
3207 3531 0.675208 ACGGTGAACTTGTGTGTGCA 60.675 50.000 0.00 0.00 0.00 4.57
3208 3532 0.027979 CGGTGAACTTGTGTGTGCAG 59.972 55.000 0.00 0.00 0.00 4.41
3209 3533 1.094785 GGTGAACTTGTGTGTGCAGT 58.905 50.000 0.00 0.00 0.00 4.40
3210 3534 1.202177 GGTGAACTTGTGTGTGCAGTG 60.202 52.381 0.00 0.00 0.00 3.66
3226 3550 2.676121 TGCTGAAATGTGGCCGGG 60.676 61.111 2.18 0.00 0.00 5.73
3280 3604 3.249917 AGGCACGTTGTTGTTTTTCTTG 58.750 40.909 0.00 0.00 0.00 3.02
3486 3810 4.999950 AGAACAATTGTGAGAGTTAGGCAG 59.000 41.667 12.82 0.00 0.00 4.85
3515 3839 1.189884 CCTGTTTTGTTTTGATGCGCG 59.810 47.619 0.00 0.00 0.00 6.86
3519 3843 0.996229 TTTGTTTTGATGCGCGCTCG 60.996 50.000 33.29 0.00 39.07 5.03
3532 3856 4.467084 GCTCGCATGGGGGTCGAA 62.467 66.667 11.77 0.00 0.00 3.71
3533 3857 2.511600 CTCGCATGGGGGTCGAAC 60.512 66.667 10.21 0.00 0.00 3.95
3534 3858 3.309436 CTCGCATGGGGGTCGAACA 62.309 63.158 10.21 0.00 0.00 3.18
3535 3859 2.124736 CGCATGGGGGTCGAACAT 60.125 61.111 1.31 0.00 0.00 2.71
3537 3861 3.513225 CATGGGGGTCGAACATGC 58.487 61.111 1.31 0.00 36.03 4.06
3538 3862 1.378382 CATGGGGGTCGAACATGCA 60.378 57.895 1.31 0.00 36.03 3.96
3540 3864 0.033208 ATGGGGGTCGAACATGCATT 60.033 50.000 1.31 0.00 0.00 3.56
3541 3865 0.251564 TGGGGGTCGAACATGCATTT 60.252 50.000 1.31 0.00 0.00 2.32
3543 3867 1.463674 GGGGTCGAACATGCATTTCT 58.536 50.000 1.31 0.00 0.00 2.52
3544 3868 1.401905 GGGGTCGAACATGCATTTCTC 59.598 52.381 1.31 0.00 0.00 2.87
3545 3869 2.083774 GGGTCGAACATGCATTTCTCA 58.916 47.619 1.31 0.00 0.00 3.27
3546 3870 2.684881 GGGTCGAACATGCATTTCTCAT 59.315 45.455 1.31 0.00 0.00 2.90
3547 3871 3.242870 GGGTCGAACATGCATTTCTCATC 60.243 47.826 1.31 0.00 0.00 2.92
3548 3872 3.242870 GGTCGAACATGCATTTCTCATCC 60.243 47.826 0.00 2.19 0.00 3.51
3549 3873 3.374988 GTCGAACATGCATTTCTCATCCA 59.625 43.478 0.00 0.00 0.00 3.41
3577 4031 4.599047 TTTTTGACAGCCGAAATGGAAT 57.401 36.364 0.00 0.00 42.00 3.01
3718 4172 1.183549 ACGGGCTCTACCAGTACTTG 58.816 55.000 0.00 0.00 46.01 3.16
3865 4319 3.759086 AGTCATCGTCTTCTTGCAGTAGA 59.241 43.478 0.00 0.00 0.00 2.59
3866 4320 3.854809 GTCATCGTCTTCTTGCAGTAGAC 59.145 47.826 12.40 12.40 38.69 2.59
3888 4342 4.161333 CGGCTAGCTTTTGAATGAACTTG 58.839 43.478 15.72 0.00 0.00 3.16
3897 4351 9.160496 AGCTTTTGAATGAACTTGTAGATAGAG 57.840 33.333 0.00 0.00 0.00 2.43
3898 4352 9.155975 GCTTTTGAATGAACTTGTAGATAGAGA 57.844 33.333 0.00 0.00 0.00 3.10
3951 4425 3.314553 CTTTCTCACATTGCTTGCTTGG 58.685 45.455 0.00 0.00 0.00 3.61
3956 4430 1.612950 CACATTGCTTGCTTGGTGGTA 59.387 47.619 0.00 0.00 0.00 3.25
3957 4431 1.613437 ACATTGCTTGCTTGGTGGTAC 59.387 47.619 0.00 0.00 0.00 3.34
3958 4432 0.881118 ATTGCTTGCTTGGTGGTACG 59.119 50.000 0.00 0.00 0.00 3.67
3959 4433 0.464735 TTGCTTGCTTGGTGGTACGT 60.465 50.000 0.00 0.00 0.00 3.57
3960 4434 1.163420 TGCTTGCTTGGTGGTACGTG 61.163 55.000 0.00 0.00 0.00 4.49
3961 4435 1.164041 GCTTGCTTGGTGGTACGTGT 61.164 55.000 0.00 0.00 0.00 4.49
3962 4436 1.305201 CTTGCTTGGTGGTACGTGTT 58.695 50.000 0.00 0.00 0.00 3.32
3963 4437 1.002900 CTTGCTTGGTGGTACGTGTTG 60.003 52.381 0.00 0.00 0.00 3.33
3964 4438 1.281656 GCTTGGTGGTACGTGTTGC 59.718 57.895 0.00 0.00 0.00 4.17
4058 4532 0.377203 TGTCCGTCATCGTCATCTCG 59.623 55.000 0.00 0.00 35.01 4.04
4099 4573 6.014584 TGGAGATCCTGCGTGTAAATATACAT 60.015 38.462 0.00 0.00 39.41 2.29
4154 4628 7.635648 AGGCTAGAGAGAGGAAACGTATATAT 58.364 38.462 0.00 0.00 0.00 0.86
4155 4629 8.770322 AGGCTAGAGAGAGGAAACGTATATATA 58.230 37.037 0.00 0.00 0.00 0.86
4156 4630 9.563748 GGCTAGAGAGAGGAAACGTATATATAT 57.436 37.037 0.00 0.00 0.00 0.86
4201 4675 2.036475 GAGAGTGAGAGGTGTTCTTGCA 59.964 50.000 0.00 0.00 35.87 4.08
4210 4684 2.070783 GGTGTTCTTGCATTGCATTGG 58.929 47.619 12.95 6.33 38.76 3.16
4216 4690 1.192803 TTGCATTGCATTGGAGGCCA 61.193 50.000 12.95 0.00 38.76 5.36
4226 4700 0.609957 TTGGAGGCCATGAGCAGTTG 60.610 55.000 5.01 0.00 46.50 3.16
4274 4753 2.106683 CCAAGTCGCGAATCCACCC 61.107 63.158 12.06 0.00 0.00 4.61
4276 4755 0.673644 CAAGTCGCGAATCCACCCTT 60.674 55.000 12.06 5.04 0.00 3.95
4283 4762 2.010497 GCGAATCCACCCTTCTTCTTC 58.990 52.381 0.00 0.00 0.00 2.87
4330 4809 1.026718 CAAAGTGCTGGGTCGGATCC 61.027 60.000 0.00 0.00 0.00 3.36
4379 4874 1.850377 CTGAGTCACGGATGATGAGC 58.150 55.000 0.00 0.00 37.14 4.26
4389 4884 1.512996 GATGATGAGCCGGCCATGTG 61.513 60.000 28.10 0.00 0.00 3.21
4390 4885 2.124570 GATGAGCCGGCCATGTGT 60.125 61.111 28.10 9.22 0.00 3.72
4391 4886 2.124570 ATGAGCCGGCCATGTGTC 60.125 61.111 26.15 13.99 0.00 3.67
4393 4888 2.124570 GAGCCGGCCATGTGTCAT 60.125 61.111 26.15 0.00 0.00 3.06
4394 4889 1.750399 GAGCCGGCCATGTGTCATT 60.750 57.895 26.15 0.00 0.00 2.57
4430 5151 7.846107 CGTTTATTTGGTCAGAGTAATCAATCG 59.154 37.037 0.00 0.00 0.00 3.34
4453 5174 1.486310 TGCTGTCTTGTGTTGACCTCT 59.514 47.619 0.00 0.00 33.83 3.69
4475 5196 6.857848 TCTCAACTGATGGATAGATAGTCCT 58.142 40.000 0.00 0.00 36.68 3.85
4476 5197 7.990055 TCTCAACTGATGGATAGATAGTCCTA 58.010 38.462 0.00 0.00 36.68 2.94
4477 5198 8.106462 TCTCAACTGATGGATAGATAGTCCTAG 58.894 40.741 0.00 0.00 36.68 3.02
4478 5199 7.760607 TCAACTGATGGATAGATAGTCCTAGT 58.239 38.462 0.00 0.00 36.68 2.57
4479 5200 8.891501 TCAACTGATGGATAGATAGTCCTAGTA 58.108 37.037 0.00 0.00 36.68 1.82
4480 5201 8.952278 CAACTGATGGATAGATAGTCCTAGTAC 58.048 40.741 0.00 0.00 36.68 2.73
4505 5226 2.552093 TCTTTAGAGCCCAGCTACCT 57.448 50.000 0.00 0.00 39.88 3.08
4563 5284 2.877168 CACTTGCCATCCTTATCTGCTC 59.123 50.000 0.00 0.00 0.00 4.26
4565 5286 3.969976 ACTTGCCATCCTTATCTGCTCTA 59.030 43.478 0.00 0.00 0.00 2.43
4566 5287 4.040217 ACTTGCCATCCTTATCTGCTCTAG 59.960 45.833 0.00 0.00 0.00 2.43
4567 5288 3.581101 TGCCATCCTTATCTGCTCTAGT 58.419 45.455 0.00 0.00 0.00 2.57
4568 5289 4.740902 TGCCATCCTTATCTGCTCTAGTA 58.259 43.478 0.00 0.00 0.00 1.82
4571 5297 5.946972 GCCATCCTTATCTGCTCTAGTAGTA 59.053 44.000 0.00 0.00 0.00 1.82
4574 5300 7.094549 CCATCCTTATCTGCTCTAGTAGTACAC 60.095 44.444 2.52 0.00 0.00 2.90
4998 5765 6.561737 GTTCTAGAAAGAAAAGAACAGGGG 57.438 41.667 6.78 0.00 45.41 4.79
4999 5766 5.242795 TCTAGAAAGAAAAGAACAGGGGG 57.757 43.478 0.00 0.00 0.00 5.40
5005 5772 5.614324 AAGAAAAGAACAGGGGGAAAAAG 57.386 39.130 0.00 0.00 0.00 2.27
5006 5773 3.388024 AGAAAAGAACAGGGGGAAAAAGC 59.612 43.478 0.00 0.00 0.00 3.51
5007 5774 2.470057 AAGAACAGGGGGAAAAAGCA 57.530 45.000 0.00 0.00 0.00 3.91
5008 5775 1.704641 AGAACAGGGGGAAAAAGCAC 58.295 50.000 0.00 0.00 0.00 4.40
5009 5776 1.217942 AGAACAGGGGGAAAAAGCACT 59.782 47.619 0.00 0.00 0.00 4.40
5010 5777 1.613925 GAACAGGGGGAAAAAGCACTC 59.386 52.381 0.00 0.00 0.00 3.51
5011 5778 0.537371 ACAGGGGGAAAAAGCACTCG 60.537 55.000 0.00 0.00 0.00 4.18
5035 5802 1.134965 GCTTGAGCGCTTCTCCTTCTA 60.135 52.381 13.26 0.00 41.18 2.10
5049 5816 8.204836 GCTTCTCCTTCTACTATATGGTTTTCA 58.795 37.037 0.00 0.00 0.00 2.69
5084 5851 2.093764 TGGGTGACAAGCAAAGGTTTTG 60.094 45.455 0.00 0.00 0.00 2.44
5091 5858 3.260632 ACAAGCAAAGGTTTTGTTCCACT 59.739 39.130 3.77 0.00 31.38 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.301002 ACATGTAGAAGTGTCTTAAGAGAAGAC 58.699 37.037 5.12 9.93 45.12 3.01
1 2 8.410673 ACATGTAGAAGTGTCTTAAGAGAAGA 57.589 34.615 5.12 0.00 35.12 2.87
2 3 9.562583 GTACATGTAGAAGTGTCTTAAGAGAAG 57.437 37.037 5.62 0.00 35.12 2.85
3 4 9.298250 AGTACATGTAGAAGTGTCTTAAGAGAA 57.702 33.333 5.62 0.00 35.12 2.87
4 5 8.865420 AGTACATGTAGAAGTGTCTTAAGAGA 57.135 34.615 5.62 0.77 35.12 3.10
5 6 8.185505 GGAGTACATGTAGAAGTGTCTTAAGAG 58.814 40.741 5.62 0.00 35.12 2.85
6 7 7.122353 GGGAGTACATGTAGAAGTGTCTTAAGA 59.878 40.741 5.62 0.00 35.12 2.10
7 8 7.122948 AGGGAGTACATGTAGAAGTGTCTTAAG 59.877 40.741 5.62 0.00 35.12 1.85
8 9 6.952358 AGGGAGTACATGTAGAAGTGTCTTAA 59.048 38.462 5.62 0.00 35.12 1.85
9 10 6.491383 AGGGAGTACATGTAGAAGTGTCTTA 58.509 40.000 5.62 0.00 35.12 2.10
10 11 5.334421 AGGGAGTACATGTAGAAGTGTCTT 58.666 41.667 5.62 0.00 35.12 3.01
11 12 4.936802 AGGGAGTACATGTAGAAGTGTCT 58.063 43.478 5.62 0.00 37.95 3.41
12 13 4.098196 GGAGGGAGTACATGTAGAAGTGTC 59.902 50.000 5.62 0.00 0.00 3.67
13 14 4.024670 GGAGGGAGTACATGTAGAAGTGT 58.975 47.826 5.62 0.00 0.00 3.55
14 15 4.098654 CAGGAGGGAGTACATGTAGAAGTG 59.901 50.000 5.62 0.00 0.00 3.16
15 16 4.264442 ACAGGAGGGAGTACATGTAGAAGT 60.264 45.833 5.62 0.00 29.45 3.01
16 17 4.282496 ACAGGAGGGAGTACATGTAGAAG 58.718 47.826 5.62 0.00 29.45 2.85
17 18 4.264217 TGACAGGAGGGAGTACATGTAGAA 60.264 45.833 5.62 0.00 31.36 2.10
18 19 3.268595 TGACAGGAGGGAGTACATGTAGA 59.731 47.826 5.62 0.00 31.36 2.59
19 20 3.632333 TGACAGGAGGGAGTACATGTAG 58.368 50.000 5.62 0.00 31.36 2.74
20 21 3.750501 TGACAGGAGGGAGTACATGTA 57.249 47.619 0.08 0.08 31.36 2.29
21 22 2.623418 TGACAGGAGGGAGTACATGT 57.377 50.000 2.69 2.69 33.83 3.21
22 23 4.494091 AAATGACAGGAGGGAGTACATG 57.506 45.455 0.00 0.00 0.00 3.21
23 24 5.520748 AAAAATGACAGGAGGGAGTACAT 57.479 39.130 0.00 0.00 0.00 2.29
24 25 4.993705 AAAAATGACAGGAGGGAGTACA 57.006 40.909 0.00 0.00 0.00 2.90
25 26 6.051179 AGTAAAAATGACAGGAGGGAGTAC 57.949 41.667 0.00 0.00 0.00 2.73
26 27 5.189145 GGAGTAAAAATGACAGGAGGGAGTA 59.811 44.000 0.00 0.00 0.00 2.59
27 28 4.019231 GGAGTAAAAATGACAGGAGGGAGT 60.019 45.833 0.00 0.00 0.00 3.85
28 29 4.518249 GGAGTAAAAATGACAGGAGGGAG 58.482 47.826 0.00 0.00 0.00 4.30
29 30 3.055385 CGGAGTAAAAATGACAGGAGGGA 60.055 47.826 0.00 0.00 0.00 4.20
30 31 3.270877 CGGAGTAAAAATGACAGGAGGG 58.729 50.000 0.00 0.00 0.00 4.30
31 32 2.678336 GCGGAGTAAAAATGACAGGAGG 59.322 50.000 0.00 0.00 0.00 4.30
32 33 3.334691 TGCGGAGTAAAAATGACAGGAG 58.665 45.455 0.00 0.00 0.00 3.69
33 34 3.410631 TGCGGAGTAAAAATGACAGGA 57.589 42.857 0.00 0.00 0.00 3.86
34 35 6.377327 AATATGCGGAGTAAAAATGACAGG 57.623 37.500 0.00 0.00 0.00 4.00
35 36 8.365399 TCTAATATGCGGAGTAAAAATGACAG 57.635 34.615 0.00 0.00 0.00 3.51
36 37 8.902540 ATCTAATATGCGGAGTAAAAATGACA 57.097 30.769 0.00 0.00 0.00 3.58
39 40 9.950680 ACAAATCTAATATGCGGAGTAAAAATG 57.049 29.630 0.00 0.00 0.00 2.32
40 41 9.950680 CACAAATCTAATATGCGGAGTAAAAAT 57.049 29.630 0.00 0.00 0.00 1.82
41 42 8.952278 ACACAAATCTAATATGCGGAGTAAAAA 58.048 29.630 0.00 0.00 0.00 1.94
42 43 8.500753 ACACAAATCTAATATGCGGAGTAAAA 57.499 30.769 0.00 0.00 0.00 1.52
43 44 7.766738 TGACACAAATCTAATATGCGGAGTAAA 59.233 33.333 0.00 0.00 0.00 2.01
44 45 7.269316 TGACACAAATCTAATATGCGGAGTAA 58.731 34.615 0.00 0.00 0.00 2.24
45 46 6.811954 TGACACAAATCTAATATGCGGAGTA 58.188 36.000 0.00 0.00 0.00 2.59
46 47 5.670485 TGACACAAATCTAATATGCGGAGT 58.330 37.500 0.00 0.00 0.00 3.85
47 48 6.603237 TTGACACAAATCTAATATGCGGAG 57.397 37.500 0.00 0.00 0.00 4.63
48 49 5.007626 GCTTGACACAAATCTAATATGCGGA 59.992 40.000 0.00 0.00 0.00 5.54
49 50 5.207768 GCTTGACACAAATCTAATATGCGG 58.792 41.667 0.00 0.00 0.00 5.69
50 51 5.207768 GGCTTGACACAAATCTAATATGCG 58.792 41.667 0.00 0.00 0.00 4.73
51 52 5.507985 GGGGCTTGACACAAATCTAATATGC 60.508 44.000 0.00 0.00 0.00 3.14
52 53 5.593909 TGGGGCTTGACACAAATCTAATATG 59.406 40.000 0.00 0.00 0.00 1.78
53 54 5.765510 TGGGGCTTGACACAAATCTAATAT 58.234 37.500 0.00 0.00 0.00 1.28
54 55 5.186256 TGGGGCTTGACACAAATCTAATA 57.814 39.130 0.00 0.00 0.00 0.98
55 56 4.046286 TGGGGCTTGACACAAATCTAAT 57.954 40.909 0.00 0.00 0.00 1.73
56 57 3.517296 TGGGGCTTGACACAAATCTAA 57.483 42.857 0.00 0.00 0.00 2.10
57 58 3.355378 CATGGGGCTTGACACAAATCTA 58.645 45.455 0.00 0.00 0.00 1.98
58 59 2.173519 CATGGGGCTTGACACAAATCT 58.826 47.619 0.00 0.00 0.00 2.40
59 60 1.205417 CCATGGGGCTTGACACAAATC 59.795 52.381 2.85 0.00 0.00 2.17
60 61 1.269012 CCATGGGGCTTGACACAAAT 58.731 50.000 2.85 0.00 0.00 2.32
61 62 0.105760 ACCATGGGGCTTGACACAAA 60.106 50.000 18.09 0.00 37.90 2.83
62 63 0.827089 CACCATGGGGCTTGACACAA 60.827 55.000 18.09 0.00 37.90 3.33
63 64 1.228521 CACCATGGGGCTTGACACA 60.229 57.895 18.09 0.00 37.90 3.72
64 65 0.827507 AACACCATGGGGCTTGACAC 60.828 55.000 15.93 0.00 37.90 3.67
65 66 0.827089 CAACACCATGGGGCTTGACA 60.827 55.000 15.93 0.00 37.90 3.58
66 67 0.827507 ACAACACCATGGGGCTTGAC 60.828 55.000 26.26 0.00 37.90 3.18
67 68 0.105760 AACAACACCATGGGGCTTGA 60.106 50.000 26.26 0.00 37.90 3.02
68 69 0.758123 AAACAACACCATGGGGCTTG 59.242 50.000 15.93 19.19 37.90 4.01
69 70 0.758123 CAAACAACACCATGGGGCTT 59.242 50.000 15.93 4.83 37.90 4.35
70 71 1.120795 CCAAACAACACCATGGGGCT 61.121 55.000 15.93 0.00 37.90 5.19
71 72 1.370810 CCAAACAACACCATGGGGC 59.629 57.895 15.93 0.00 37.90 5.80
72 73 1.127343 AACCAAACAACACCATGGGG 58.873 50.000 14.08 14.08 37.26 4.96
73 74 1.484240 ACAACCAAACAACACCATGGG 59.516 47.619 18.09 7.72 37.26 4.00
74 75 2.977772 ACAACCAAACAACACCATGG 57.022 45.000 11.19 11.19 38.91 3.66
75 76 6.917217 AAATAACAACCAAACAACACCATG 57.083 33.333 0.00 0.00 0.00 3.66
76 77 7.826744 AGAAAAATAACAACCAAACAACACCAT 59.173 29.630 0.00 0.00 0.00 3.55
77 78 7.162082 AGAAAAATAACAACCAAACAACACCA 58.838 30.769 0.00 0.00 0.00 4.17
78 79 7.603963 AGAAAAATAACAACCAAACAACACC 57.396 32.000 0.00 0.00 0.00 4.16
126 127 9.603189 CCTAGTCCCTTCCTAGAGATTATTAAA 57.397 37.037 0.00 0.00 35.01 1.52
127 128 8.178132 CCCTAGTCCCTTCCTAGAGATTATTAA 58.822 40.741 0.00 0.00 35.01 1.40
128 129 7.710579 CCCTAGTCCCTTCCTAGAGATTATTA 58.289 42.308 0.00 0.00 35.01 0.98
129 130 6.566914 CCCTAGTCCCTTCCTAGAGATTATT 58.433 44.000 0.00 0.00 35.01 1.40
130 131 5.519442 GCCCTAGTCCCTTCCTAGAGATTAT 60.519 48.000 0.00 0.00 35.01 1.28
131 132 4.202695 GCCCTAGTCCCTTCCTAGAGATTA 60.203 50.000 0.00 0.00 35.01 1.75
132 133 3.438816 GCCCTAGTCCCTTCCTAGAGATT 60.439 52.174 0.00 0.00 35.01 2.40
133 134 2.111077 GCCCTAGTCCCTTCCTAGAGAT 59.889 54.545 0.00 0.00 35.01 2.75
134 135 1.499870 GCCCTAGTCCCTTCCTAGAGA 59.500 57.143 0.00 0.00 35.01 3.10
135 136 1.501604 AGCCCTAGTCCCTTCCTAGAG 59.498 57.143 0.00 0.00 35.01 2.43
136 137 1.621733 AGCCCTAGTCCCTTCCTAGA 58.378 55.000 0.00 0.00 35.01 2.43
137 138 2.480642 AAGCCCTAGTCCCTTCCTAG 57.519 55.000 0.00 0.00 33.23 3.02
138 139 2.963654 AAAGCCCTAGTCCCTTCCTA 57.036 50.000 0.00 0.00 0.00 2.94
139 140 2.061264 AAAAGCCCTAGTCCCTTCCT 57.939 50.000 0.00 0.00 0.00 3.36
140 141 2.901338 AAAAAGCCCTAGTCCCTTCC 57.099 50.000 0.00 0.00 0.00 3.46
141 142 4.515361 GACTAAAAAGCCCTAGTCCCTTC 58.485 47.826 0.00 0.00 38.64 3.46
142 143 4.571369 GACTAAAAAGCCCTAGTCCCTT 57.429 45.455 0.00 0.00 38.64 3.95
146 147 5.099042 TCATGGACTAAAAAGCCCTAGTC 57.901 43.478 0.00 1.43 42.17 2.59
147 148 5.514500 TTCATGGACTAAAAAGCCCTAGT 57.486 39.130 0.00 0.00 0.00 2.57
148 149 6.208599 TGTTTTCATGGACTAAAAAGCCCTAG 59.791 38.462 0.00 0.00 0.00 3.02
149 150 6.071984 TGTTTTCATGGACTAAAAAGCCCTA 58.928 36.000 0.00 0.00 0.00 3.53
150 151 4.898861 TGTTTTCATGGACTAAAAAGCCCT 59.101 37.500 0.00 0.00 0.00 5.19
151 152 5.208463 TGTTTTCATGGACTAAAAAGCCC 57.792 39.130 0.00 0.00 0.00 5.19
152 153 6.536941 TGTTTGTTTTCATGGACTAAAAAGCC 59.463 34.615 0.00 0.00 0.00 4.35
153 154 7.254421 CCTGTTTGTTTTCATGGACTAAAAAGC 60.254 37.037 0.00 0.00 0.00 3.51
154 155 7.224557 CCCTGTTTGTTTTCATGGACTAAAAAG 59.775 37.037 0.00 0.00 0.00 2.27
155 156 7.044798 CCCTGTTTGTTTTCATGGACTAAAAA 58.955 34.615 0.00 0.00 0.00 1.94
156 157 6.407525 CCCCTGTTTGTTTTCATGGACTAAAA 60.408 38.462 0.00 0.00 0.00 1.52
157 158 5.069781 CCCCTGTTTGTTTTCATGGACTAAA 59.930 40.000 0.00 0.00 0.00 1.85
158 159 4.586841 CCCCTGTTTGTTTTCATGGACTAA 59.413 41.667 0.00 0.00 0.00 2.24
159 160 4.148838 CCCCTGTTTGTTTTCATGGACTA 58.851 43.478 0.00 0.00 0.00 2.59
160 161 2.965147 CCCCTGTTTGTTTTCATGGACT 59.035 45.455 0.00 0.00 0.00 3.85
161 162 2.037121 CCCCCTGTTTGTTTTCATGGAC 59.963 50.000 0.00 0.00 0.00 4.02
162 163 2.324541 CCCCCTGTTTGTTTTCATGGA 58.675 47.619 0.00 0.00 0.00 3.41
163 164 2.837532 CCCCCTGTTTGTTTTCATGG 57.162 50.000 0.00 0.00 0.00 3.66
179 180 3.789840 TCCCTAATCCTAAAAAGTCCCCC 59.210 47.826 0.00 0.00 0.00 5.40
180 181 4.477581 AGTCCCTAATCCTAAAAAGTCCCC 59.522 45.833 0.00 0.00 0.00 4.81
181 182 5.712084 AGTCCCTAATCCTAAAAAGTCCC 57.288 43.478 0.00 0.00 0.00 4.46
182 183 8.418597 AAAAAGTCCCTAATCCTAAAAAGTCC 57.581 34.615 0.00 0.00 0.00 3.85
190 191 9.734984 CTTTCAACTAAAAAGTCCCTAATCCTA 57.265 33.333 0.00 0.00 0.00 2.94
191 192 8.225416 ACTTTCAACTAAAAAGTCCCTAATCCT 58.775 33.333 0.00 0.00 41.86 3.24
192 193 8.405418 ACTTTCAACTAAAAAGTCCCTAATCC 57.595 34.615 0.00 0.00 41.86 3.01
195 196 8.400186 CGAAACTTTCAACTAAAAAGTCCCTAA 58.600 33.333 2.49 0.00 44.13 2.69
196 197 7.012610 CCGAAACTTTCAACTAAAAAGTCCCTA 59.987 37.037 2.49 0.00 44.13 3.53
197 198 6.183360 CCGAAACTTTCAACTAAAAAGTCCCT 60.183 38.462 2.49 0.00 44.13 4.20
198 199 5.975344 CCGAAACTTTCAACTAAAAAGTCCC 59.025 40.000 2.49 0.00 44.13 4.46
199 200 6.788243 TCCGAAACTTTCAACTAAAAAGTCC 58.212 36.000 2.49 0.00 44.13 3.85
200 201 8.179615 TCTTCCGAAACTTTCAACTAAAAAGTC 58.820 33.333 2.49 0.00 44.13 3.01
201 202 8.047413 TCTTCCGAAACTTTCAACTAAAAAGT 57.953 30.769 2.49 0.00 46.22 2.66
202 203 7.165977 GCTCTTCCGAAACTTTCAACTAAAAAG 59.834 37.037 2.49 0.00 39.20 2.27
203 204 6.970613 GCTCTTCCGAAACTTTCAACTAAAAA 59.029 34.615 2.49 0.00 0.00 1.94
204 205 6.459161 GGCTCTTCCGAAACTTTCAACTAAAA 60.459 38.462 2.49 0.00 0.00 1.52
205 206 5.008316 GGCTCTTCCGAAACTTTCAACTAAA 59.992 40.000 2.49 0.00 0.00 1.85
206 207 4.514066 GGCTCTTCCGAAACTTTCAACTAA 59.486 41.667 2.49 0.00 0.00 2.24
207 208 4.062991 GGCTCTTCCGAAACTTTCAACTA 58.937 43.478 2.49 0.00 0.00 2.24
208 209 2.879026 GGCTCTTCCGAAACTTTCAACT 59.121 45.455 2.49 0.00 0.00 3.16
209 210 3.269486 GGCTCTTCCGAAACTTTCAAC 57.731 47.619 2.49 0.00 0.00 3.18
233 234 1.823470 TATGGCAATGTGCTCGCCC 60.823 57.895 0.00 0.00 45.63 6.13
234 235 1.356624 GTATGGCAATGTGCTCGCC 59.643 57.895 0.00 0.00 44.28 5.54
235 236 0.028505 CTGTATGGCAATGTGCTCGC 59.971 55.000 0.00 0.00 44.28 5.03
236 237 1.372582 ACTGTATGGCAATGTGCTCG 58.627 50.000 0.00 0.00 44.28 5.03
237 238 4.662145 GTTTACTGTATGGCAATGTGCTC 58.338 43.478 0.00 0.00 44.28 4.26
238 239 3.126858 CGTTTACTGTATGGCAATGTGCT 59.873 43.478 0.00 0.00 44.28 4.40
239 240 3.126171 TCGTTTACTGTATGGCAATGTGC 59.874 43.478 0.00 0.00 44.08 4.57
240 241 4.727734 GCTCGTTTACTGTATGGCAATGTG 60.728 45.833 0.00 0.00 0.00 3.21
241 242 3.374058 GCTCGTTTACTGTATGGCAATGT 59.626 43.478 0.00 0.00 0.00 2.71
242 243 3.373748 TGCTCGTTTACTGTATGGCAATG 59.626 43.478 0.00 0.00 0.00 2.82
243 244 3.605634 TGCTCGTTTACTGTATGGCAAT 58.394 40.909 0.00 0.00 0.00 3.56
244 245 3.046968 TGCTCGTTTACTGTATGGCAA 57.953 42.857 0.00 0.00 0.00 4.52
245 246 2.753055 TGCTCGTTTACTGTATGGCA 57.247 45.000 0.00 0.00 0.00 4.92
246 247 2.287915 CCATGCTCGTTTACTGTATGGC 59.712 50.000 0.00 0.00 37.21 4.40
247 248 3.531538 ACCATGCTCGTTTACTGTATGG 58.468 45.455 13.68 13.68 45.29 2.74
248 249 4.034048 GGAACCATGCTCGTTTACTGTATG 59.966 45.833 0.00 0.00 0.00 2.39
249 250 4.189231 GGAACCATGCTCGTTTACTGTAT 58.811 43.478 0.00 0.00 0.00 2.29
250 251 3.592059 GGAACCATGCTCGTTTACTGTA 58.408 45.455 0.00 0.00 0.00 2.74
251 252 2.423577 GGAACCATGCTCGTTTACTGT 58.576 47.619 0.00 0.00 0.00 3.55
252 253 1.393539 CGGAACCATGCTCGTTTACTG 59.606 52.381 0.00 0.00 0.00 2.74
253 254 1.001633 ACGGAACCATGCTCGTTTACT 59.998 47.619 0.00 0.00 31.38 2.24
254 255 1.435577 ACGGAACCATGCTCGTTTAC 58.564 50.000 0.00 0.00 31.38 2.01
255 256 2.172851 AACGGAACCATGCTCGTTTA 57.827 45.000 7.44 0.00 42.12 2.01
256 257 2.172851 TAACGGAACCATGCTCGTTT 57.827 45.000 14.93 2.66 42.12 3.60
257 258 2.172851 TTAACGGAACCATGCTCGTT 57.827 45.000 14.41 14.41 45.76 3.85
258 259 2.073816 CTTTAACGGAACCATGCTCGT 58.926 47.619 0.00 0.00 37.45 4.18
259 260 2.343101 TCTTTAACGGAACCATGCTCG 58.657 47.619 0.00 0.00 0.00 5.03
260 261 4.965119 AATCTTTAACGGAACCATGCTC 57.035 40.909 0.00 0.00 0.00 4.26
261 262 4.764823 TCAAATCTTTAACGGAACCATGCT 59.235 37.500 0.00 0.00 0.00 3.79
262 263 5.054390 TCAAATCTTTAACGGAACCATGC 57.946 39.130 0.00 0.00 0.00 4.06
263 264 6.677913 AGTTCAAATCTTTAACGGAACCATG 58.322 36.000 0.00 0.00 36.25 3.66
264 265 6.894339 AGTTCAAATCTTTAACGGAACCAT 57.106 33.333 0.00 0.00 36.25 3.55
265 266 7.804843 TTAGTTCAAATCTTTAACGGAACCA 57.195 32.000 0.00 0.00 36.25 3.67
266 267 9.687210 ATTTTAGTTCAAATCTTTAACGGAACC 57.313 29.630 0.00 0.00 36.25 3.62
277 278 9.903682 CAAGTGTCATGATTTTAGTTCAAATCT 57.096 29.630 0.00 0.00 41.80 2.40
278 279 9.683069 ACAAGTGTCATGATTTTAGTTCAAATC 57.317 29.630 0.00 0.11 41.68 2.17
292 293 5.434182 TCCATCCATAACAAGTGTCATGA 57.566 39.130 0.00 0.00 0.00 3.07
295 296 4.525996 CCATCCATCCATAACAAGTGTCA 58.474 43.478 0.00 0.00 0.00 3.58
299 300 3.139025 CCTCCCATCCATCCATAACAAGT 59.861 47.826 0.00 0.00 0.00 3.16
300 301 3.499202 CCCTCCCATCCATCCATAACAAG 60.499 52.174 0.00 0.00 0.00 3.16
307 308 1.073474 CCTCCCTCCCATCCATCCA 60.073 63.158 0.00 0.00 0.00 3.41
339 344 4.994756 CTGGGGTGGTTGGTGGGC 62.995 72.222 0.00 0.00 0.00 5.36
518 541 2.964925 TTGACTCGTGTGTGGCGC 60.965 61.111 0.00 0.00 0.00 6.53
519 542 2.927618 CGTTGACTCGTGTGTGGCG 61.928 63.158 0.00 0.00 0.00 5.69
520 543 2.594962 CCGTTGACTCGTGTGTGGC 61.595 63.158 0.00 0.00 0.00 5.01
521 544 2.594962 GCCGTTGACTCGTGTGTGG 61.595 63.158 0.00 0.00 0.00 4.17
528 558 1.433879 CTCCCTAGCCGTTGACTCG 59.566 63.158 0.00 0.00 0.00 4.18
547 577 2.367202 TTCCACATCGCTCCCCCTC 61.367 63.158 0.00 0.00 0.00 4.30
548 578 2.285368 TTCCACATCGCTCCCCCT 60.285 61.111 0.00 0.00 0.00 4.79
549 579 2.124695 GTTCCACATCGCTCCCCC 60.125 66.667 0.00 0.00 0.00 5.40
559 589 0.531090 CCGTTCCGTTCTGTTCCACA 60.531 55.000 0.00 0.00 0.00 4.17
567 597 0.319297 CTTCCGTTCCGTTCCGTTCT 60.319 55.000 0.00 0.00 0.00 3.01
678 709 1.002011 GACTTGGGGAGTTGGAGCC 60.002 63.158 0.00 0.00 39.19 4.70
725 756 1.654023 GGATTATAATGCGGGGCGGC 61.654 60.000 1.78 0.00 0.00 6.53
728 759 0.683179 GGGGGATTATAATGCGGGGC 60.683 60.000 10.44 0.00 0.00 5.80
989 1020 1.625228 CCATGGTGGTAGAAGGGAGGA 60.625 57.143 2.57 0.00 31.35 3.71
990 1021 0.839946 CCATGGTGGTAGAAGGGAGG 59.160 60.000 2.57 0.00 31.35 4.30
991 1022 0.839946 CCCATGGTGGTAGAAGGGAG 59.160 60.000 11.73 0.00 38.60 4.30
992 1023 1.279025 GCCCATGGTGGTAGAAGGGA 61.279 60.000 11.73 0.00 38.60 4.20
993 1024 1.227383 GCCCATGGTGGTAGAAGGG 59.773 63.158 11.73 0.00 35.17 3.95
994 1025 0.331278 TTGCCCATGGTGGTAGAAGG 59.669 55.000 11.73 0.00 35.17 3.46
995 1026 1.004745 AGTTGCCCATGGTGGTAGAAG 59.995 52.381 11.73 0.00 35.17 2.85
996 1027 1.004277 GAGTTGCCCATGGTGGTAGAA 59.996 52.381 11.73 0.00 35.17 2.10
997 1028 0.618458 GAGTTGCCCATGGTGGTAGA 59.382 55.000 11.73 0.00 35.17 2.59
998 1029 0.394352 GGAGTTGCCCATGGTGGTAG 60.394 60.000 11.73 0.00 35.17 3.18
999 1030 1.688811 GGAGTTGCCCATGGTGGTA 59.311 57.895 11.73 0.00 35.17 3.25
1000 1031 2.440599 GGAGTTGCCCATGGTGGT 59.559 61.111 11.73 0.00 35.17 4.16
1184 1382 4.813526 CGAGCAGGTCGTCGTCCG 62.814 72.222 14.02 0.25 44.20 4.79
1464 1662 4.806339 AGGGGCCCGGAGAGGAAG 62.806 72.222 18.95 0.00 45.00 3.46
1803 2016 3.644399 GAGGAAGTCGGTGGCGTCC 62.644 68.421 0.00 0.00 35.26 4.79
1911 2124 4.743125 TGGTCCGGGGCCATGGTA 62.743 66.667 18.39 0.00 0.00 3.25
2055 2274 4.021925 GGAGGAGGCTGCGTTGGT 62.022 66.667 0.00 0.00 0.00 3.67
2301 2520 3.590824 TCGCTGATGTGCTCGAGA 58.409 55.556 18.75 0.00 0.00 4.04
2418 2652 6.825721 AGACAAAGAACAGACACTCAATTTCT 59.174 34.615 0.00 0.00 0.00 2.52
2419 2653 6.909357 CAGACAAAGAACAGACACTCAATTTC 59.091 38.462 0.00 0.00 0.00 2.17
2444 2678 6.293845 GGCACAGATAAACCATCATCAGATTC 60.294 42.308 0.00 0.00 35.96 2.52
2445 2679 5.533903 GGCACAGATAAACCATCATCAGATT 59.466 40.000 0.00 0.00 35.96 2.40
2446 2680 5.068636 GGCACAGATAAACCATCATCAGAT 58.931 41.667 0.00 0.00 35.96 2.90
2447 2681 4.454678 GGCACAGATAAACCATCATCAGA 58.545 43.478 0.00 0.00 35.96 3.27
2448 2682 3.249320 CGGCACAGATAAACCATCATCAG 59.751 47.826 0.00 0.00 35.96 2.90
2449 2683 3.118445 TCGGCACAGATAAACCATCATCA 60.118 43.478 0.00 0.00 35.96 3.07
2643 2877 9.965902 AGACTTCATAATCACTTAAGGAACAAT 57.034 29.630 7.53 0.00 0.00 2.71
2644 2878 9.219603 CAGACTTCATAATCACTTAAGGAACAA 57.780 33.333 7.53 0.00 0.00 2.83
2645 2879 7.334421 GCAGACTTCATAATCACTTAAGGAACA 59.666 37.037 7.53 0.00 0.00 3.18
2646 2880 7.334421 TGCAGACTTCATAATCACTTAAGGAAC 59.666 37.037 7.53 0.00 0.00 3.62
2647 2881 7.394016 TGCAGACTTCATAATCACTTAAGGAA 58.606 34.615 7.53 0.00 0.00 3.36
2653 2887 6.435277 ACCAATTGCAGACTTCATAATCACTT 59.565 34.615 0.00 0.00 0.00 3.16
2660 2894 7.337938 TCATCTAACCAATTGCAGACTTCATA 58.662 34.615 0.00 0.00 0.00 2.15
2665 2899 5.564550 AGTTCATCTAACCAATTGCAGACT 58.435 37.500 0.00 0.00 39.03 3.24
2666 2900 5.886960 AGTTCATCTAACCAATTGCAGAC 57.113 39.130 0.00 0.00 39.03 3.51
2690 2947 2.438385 AAATCACCGTCGCGCAACAC 62.438 55.000 8.75 0.00 0.00 3.32
2755 3012 7.830739 AGACATTTCATTGAATTAGTTGGGAC 58.169 34.615 0.00 0.00 0.00 4.46
2777 3041 4.748102 TGACATGTCCGTTTCAAGTAAGAC 59.252 41.667 22.85 0.00 0.00 3.01
2844 3108 5.885912 AGTTATGTGTTGACCAAAAGTGTCT 59.114 36.000 0.00 0.00 33.83 3.41
2957 3238 2.740506 TTCCCGTCCAAAAGGAGTTT 57.259 45.000 0.00 0.00 0.00 2.66
2958 3239 2.740506 TTTCCCGTCCAAAAGGAGTT 57.259 45.000 0.00 0.00 0.00 3.01
2959 3240 2.971901 ATTTCCCGTCCAAAAGGAGT 57.028 45.000 0.00 0.00 0.00 3.85
2960 3241 2.676342 CGTATTTCCCGTCCAAAAGGAG 59.324 50.000 0.00 0.00 0.00 3.69
2961 3242 2.302445 TCGTATTTCCCGTCCAAAAGGA 59.698 45.455 0.00 0.00 0.00 3.36
2962 3243 2.417586 GTCGTATTTCCCGTCCAAAAGG 59.582 50.000 0.00 0.00 0.00 3.11
3035 3316 1.067821 TGCTTTGAAAAATTCCGCCGT 59.932 42.857 0.00 0.00 0.00 5.68
3052 3333 7.730084 TGAGCTAACTTATCAATAGTCATGCT 58.270 34.615 0.00 0.00 32.26 3.79
3053 3334 7.655328 ACTGAGCTAACTTATCAATAGTCATGC 59.345 37.037 0.00 0.00 0.00 4.06
3054 3335 9.539825 AACTGAGCTAACTTATCAATAGTCATG 57.460 33.333 0.00 0.00 0.00 3.07
3055 3336 9.757227 GAACTGAGCTAACTTATCAATAGTCAT 57.243 33.333 0.00 0.00 0.00 3.06
3056 3337 8.198109 GGAACTGAGCTAACTTATCAATAGTCA 58.802 37.037 0.00 0.00 0.00 3.41
3057 3338 7.654116 GGGAACTGAGCTAACTTATCAATAGTC 59.346 40.741 0.00 0.00 0.00 2.59
3058 3339 7.345914 AGGGAACTGAGCTAACTTATCAATAGT 59.654 37.037 0.00 0.00 41.13 2.12
3059 3340 7.731054 AGGGAACTGAGCTAACTTATCAATAG 58.269 38.462 0.00 0.00 41.13 1.73
3060 3341 7.676683 AGGGAACTGAGCTAACTTATCAATA 57.323 36.000 0.00 0.00 41.13 1.90
3061 3342 6.567602 AGGGAACTGAGCTAACTTATCAAT 57.432 37.500 0.00 0.00 41.13 2.57
3105 3406 3.131400 GCTTCTCCTACAATCCTTCGACT 59.869 47.826 0.00 0.00 0.00 4.18
3112 3417 0.466124 AGCGGCTTCTCCTACAATCC 59.534 55.000 0.00 0.00 0.00 3.01
3113 3418 1.576356 CAGCGGCTTCTCCTACAATC 58.424 55.000 0.00 0.00 0.00 2.67
3129 3434 0.461135 CTCTTCTCTGGGAGAGCAGC 59.539 60.000 0.00 0.00 42.04 5.25
3145 3450 3.135895 TGAAAGGAACCCTCGTTTTCTCT 59.864 43.478 0.00 0.00 39.22 3.10
3146 3451 3.250280 GTGAAAGGAACCCTCGTTTTCTC 59.750 47.826 0.00 0.00 39.22 2.87
3147 3452 3.118000 AGTGAAAGGAACCCTCGTTTTCT 60.118 43.478 0.00 0.00 39.22 2.52
3189 3498 0.027979 CTGCACACACAAGTTCACCG 59.972 55.000 0.00 0.00 0.00 4.94
3202 3526 0.669619 CCACATTTCAGCACTGCACA 59.330 50.000 3.30 0.00 0.00 4.57
3203 3527 0.665369 GCCACATTTCAGCACTGCAC 60.665 55.000 3.30 0.00 0.00 4.57
3204 3528 1.661480 GCCACATTTCAGCACTGCA 59.339 52.632 3.30 0.00 0.00 4.41
3205 3529 1.080298 GGCCACATTTCAGCACTGC 60.080 57.895 0.00 0.00 0.00 4.40
3206 3530 1.210931 CGGCCACATTTCAGCACTG 59.789 57.895 2.24 0.00 0.00 3.66
3207 3531 1.973281 CCGGCCACATTTCAGCACT 60.973 57.895 2.24 0.00 0.00 4.40
3208 3532 2.568090 CCGGCCACATTTCAGCAC 59.432 61.111 2.24 0.00 0.00 4.40
3209 3533 2.676121 CCCGGCCACATTTCAGCA 60.676 61.111 2.24 0.00 0.00 4.41
3210 3534 1.937546 CTTCCCGGCCACATTTCAGC 61.938 60.000 2.24 0.00 0.00 4.26
3295 3619 2.489329 CACATGGCAGGAGACGATTTTT 59.511 45.455 5.99 0.00 0.00 1.94
3296 3620 2.086869 CACATGGCAGGAGACGATTTT 58.913 47.619 5.99 0.00 0.00 1.82
3303 3627 1.421268 ACACTTTCACATGGCAGGAGA 59.579 47.619 5.99 0.00 0.00 3.71
3348 3672 4.036262 AGTGATCGAGCTGACAATAGAGAC 59.964 45.833 0.90 0.00 0.00 3.36
3486 3810 7.569957 GCATCAAAACAAAACAGGATTCATGTC 60.570 37.037 4.19 0.00 0.00 3.06
3515 3839 4.467084 TTCGACCCCCATGCGAGC 62.467 66.667 0.00 0.00 35.31 5.03
3519 3843 3.513225 CATGTTCGACCCCCATGC 58.487 61.111 0.00 0.00 30.63 4.06
3521 3845 0.033208 AATGCATGTTCGACCCCCAT 60.033 50.000 0.00 0.00 0.00 4.00
3523 3847 0.455815 GAAATGCATGTTCGACCCCC 59.544 55.000 0.00 0.00 0.00 5.40
3524 3848 1.401905 GAGAAATGCATGTTCGACCCC 59.598 52.381 0.00 0.00 0.00 4.95
3525 3849 2.083774 TGAGAAATGCATGTTCGACCC 58.916 47.619 0.00 1.08 0.00 4.46
3526 3850 3.242870 GGATGAGAAATGCATGTTCGACC 60.243 47.826 0.00 6.76 0.00 4.79
3527 3851 3.374988 TGGATGAGAAATGCATGTTCGAC 59.625 43.478 0.00 7.26 0.00 4.20
3528 3852 3.608796 TGGATGAGAAATGCATGTTCGA 58.391 40.909 0.00 0.24 0.00 3.71
3530 3854 5.100259 CAGTTGGATGAGAAATGCATGTTC 58.900 41.667 0.00 6.73 0.00 3.18
3531 3855 4.619863 GCAGTTGGATGAGAAATGCATGTT 60.620 41.667 0.00 0.00 42.49 2.71
3532 3856 3.119245 GCAGTTGGATGAGAAATGCATGT 60.119 43.478 0.00 0.00 42.49 3.21
3533 3857 3.130516 AGCAGTTGGATGAGAAATGCATG 59.869 43.478 0.00 0.00 44.72 4.06
3534 3858 3.362706 AGCAGTTGGATGAGAAATGCAT 58.637 40.909 7.55 0.00 44.72 3.96
3535 3859 2.799017 AGCAGTTGGATGAGAAATGCA 58.201 42.857 7.55 0.00 44.72 3.96
3577 4031 3.763356 ATCTCCAGCAGCGCGTCA 61.763 61.111 8.43 0.00 0.00 4.35
3718 4172 3.692406 ACCGCCTCCTCGTTGGTC 61.692 66.667 0.00 0.00 37.07 4.02
3749 4203 2.681666 CGTCGTCGCGATGAACAC 59.318 61.111 31.10 18.88 44.49 3.32
3820 4274 0.665835 TTGCCGTACCTGCTTTGTTG 59.334 50.000 3.95 0.00 0.00 3.33
3838 4292 3.876914 TGCAAGAAGACGATGACTTGTTT 59.123 39.130 0.00 0.00 40.88 2.83
3865 4319 3.412386 AGTTCATTCAAAAGCTAGCCGT 58.588 40.909 12.13 0.00 0.00 5.68
3866 4320 4.161333 CAAGTTCATTCAAAAGCTAGCCG 58.839 43.478 12.13 0.00 0.00 5.52
3867 4321 5.126396 ACAAGTTCATTCAAAAGCTAGCC 57.874 39.130 12.13 0.00 0.00 3.93
3868 4322 7.133891 TCTACAAGTTCATTCAAAAGCTAGC 57.866 36.000 6.62 6.62 0.00 3.42
3888 4342 7.011109 GCTCGACCATCTTATCTCTCTATCTAC 59.989 44.444 0.00 0.00 0.00 2.59
3897 4351 3.608241 CGACTGCTCGACCATCTTATCTC 60.608 52.174 0.00 0.00 43.06 2.75
3898 4352 2.292016 CGACTGCTCGACCATCTTATCT 59.708 50.000 0.00 0.00 43.06 1.98
3899 4353 2.290916 TCGACTGCTCGACCATCTTATC 59.709 50.000 0.00 0.00 44.14 1.75
3900 4354 2.298610 TCGACTGCTCGACCATCTTAT 58.701 47.619 0.00 0.00 44.14 1.73
3901 4355 1.746470 TCGACTGCTCGACCATCTTA 58.254 50.000 0.00 0.00 44.14 2.10
3902 4356 2.568003 TCGACTGCTCGACCATCTT 58.432 52.632 0.00 0.00 44.14 2.40
3903 4357 4.320910 TCGACTGCTCGACCATCT 57.679 55.556 0.00 0.00 44.14 2.90
3919 4393 3.126001 TGTGAGAAAGGTGTGTCCATC 57.874 47.619 0.00 0.00 39.02 3.51
3924 4398 2.936202 AGCAATGTGAGAAAGGTGTGT 58.064 42.857 0.00 0.00 0.00 3.72
3925 4399 3.635331 CAAGCAATGTGAGAAAGGTGTG 58.365 45.455 0.00 0.00 0.00 3.82
3951 4425 1.569493 CAGCAGCAACACGTACCAC 59.431 57.895 0.00 0.00 0.00 4.16
3956 4430 3.957535 GCAGCAGCAGCAACACGT 61.958 61.111 4.63 0.00 45.49 4.49
4058 4532 2.509916 CAGATCCTGCCCTCCAGC 59.490 66.667 0.00 0.00 40.36 4.85
4116 4590 7.890127 CCTCTCTCTAGCCTACTACTACTACTA 59.110 44.444 0.00 0.00 0.00 1.82
4117 4591 6.723052 CCTCTCTCTAGCCTACTACTACTACT 59.277 46.154 0.00 0.00 0.00 2.57
4118 4592 6.721208 TCCTCTCTCTAGCCTACTACTACTAC 59.279 46.154 0.00 0.00 0.00 2.73
4160 4634 9.467796 CACTCTCTCTCTCTCTCTCTCTATATA 57.532 40.741 0.00 0.00 0.00 0.86
4161 4635 8.173412 TCACTCTCTCTCTCTCTCTCTCTATAT 58.827 40.741 0.00 0.00 0.00 0.86
4162 4636 7.526918 TCACTCTCTCTCTCTCTCTCTCTATA 58.473 42.308 0.00 0.00 0.00 1.31
4163 4637 6.377080 TCACTCTCTCTCTCTCTCTCTCTAT 58.623 44.000 0.00 0.00 0.00 1.98
4164 4638 5.766590 TCACTCTCTCTCTCTCTCTCTCTA 58.233 45.833 0.00 0.00 0.00 2.43
4165 4639 4.614475 TCACTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
4166 4640 4.646945 TCTCACTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
4167 4641 4.614475 TCTCACTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
4168 4642 4.202202 CCTCTCACTCTCTCTCTCTCTCTC 60.202 54.167 0.00 0.00 0.00 3.20
4176 4650 3.686016 AGAACACCTCTCACTCTCTCTC 58.314 50.000 0.00 0.00 0.00 3.20
4185 4659 1.881973 GCAATGCAAGAACACCTCTCA 59.118 47.619 0.00 0.00 31.02 3.27
4201 4675 1.410004 CTCATGGCCTCCAATGCAAT 58.590 50.000 3.32 0.00 36.95 3.56
4210 4684 0.610232 AACCAACTGCTCATGGCCTC 60.610 55.000 3.32 0.00 40.51 4.70
4216 4690 1.512926 GACACGAACCAACTGCTCAT 58.487 50.000 0.00 0.00 0.00 2.90
4330 4809 2.436646 GCACCCACCAGATGACCG 60.437 66.667 0.00 0.00 0.00 4.79
4379 4874 0.452987 CTCAAATGACACATGGCCGG 59.547 55.000 0.00 0.00 0.00 6.13
4389 4884 0.872388 AAACGGACGCCTCAAATGAC 59.128 50.000 0.00 0.00 0.00 3.06
4390 4885 2.459060 TAAACGGACGCCTCAAATGA 57.541 45.000 0.00 0.00 0.00 2.57
4391 4886 3.757745 AATAAACGGACGCCTCAAATG 57.242 42.857 0.00 0.00 0.00 2.32
4393 4888 2.226912 CCAAATAAACGGACGCCTCAAA 59.773 45.455 0.00 0.00 0.00 2.69
4394 4889 1.807742 CCAAATAAACGGACGCCTCAA 59.192 47.619 0.00 0.00 0.00 3.02
4430 5151 2.880890 AGGTCAACACAAGACAGCAATC 59.119 45.455 0.00 0.00 37.74 2.67
4453 5174 7.760607 ACTAGGACTATCTATCCATCAGTTGA 58.239 38.462 0.00 0.00 38.86 3.18
4475 5196 6.941436 GCTGGGCTCTAAAGATAGTAGTACTA 59.059 42.308 12.38 12.38 34.82 1.82
4476 5197 5.771165 GCTGGGCTCTAAAGATAGTAGTACT 59.229 44.000 8.14 8.14 0.00 2.73
4477 5198 5.771165 AGCTGGGCTCTAAAGATAGTAGTAC 59.229 44.000 0.00 0.00 30.62 2.73
4478 5199 5.954757 AGCTGGGCTCTAAAGATAGTAGTA 58.045 41.667 0.00 0.00 30.62 1.82
4479 5200 4.810345 AGCTGGGCTCTAAAGATAGTAGT 58.190 43.478 0.00 0.00 30.62 2.73
4480 5201 5.184287 GGTAGCTGGGCTCTAAAGATAGTAG 59.816 48.000 0.00 0.00 40.44 2.57
4505 5226 4.151121 TGAAATCAATTGTTCAGCAGGGA 58.849 39.130 5.13 0.00 30.41 4.20
4563 5284 5.414360 TCCTACAGTGTCGTGTACTACTAG 58.586 45.833 0.00 0.00 31.46 2.57
4565 5286 4.252073 CTCCTACAGTGTCGTGTACTACT 58.748 47.826 0.00 0.00 31.46 2.57
4566 5287 3.181512 GCTCCTACAGTGTCGTGTACTAC 60.182 52.174 0.00 0.00 31.46 2.73
4567 5288 3.005554 GCTCCTACAGTGTCGTGTACTA 58.994 50.000 0.00 0.00 31.46 1.82
4568 5289 1.811359 GCTCCTACAGTGTCGTGTACT 59.189 52.381 0.00 0.00 31.46 2.73
4571 5297 0.598562 CTGCTCCTACAGTGTCGTGT 59.401 55.000 0.00 0.00 32.78 4.49
4955 5688 2.167693 ACAGCAGCCATCCATTCAATTG 59.832 45.455 0.00 0.00 0.00 2.32
4959 5692 1.005097 AGAACAGCAGCCATCCATTCA 59.995 47.619 0.00 0.00 0.00 2.57
4965 5698 3.866651 TCTTTCTAGAACAGCAGCCATC 58.133 45.455 4.18 0.00 0.00 3.51
5005 5772 2.175322 GCTCAAGCAAGCGAGTGC 59.825 61.111 2.74 2.74 45.28 4.40
5011 5778 1.134281 GAGAAGCGCTCAAGCAAGC 59.866 57.895 12.06 0.00 43.38 4.01
5020 5787 4.461081 CCATATAGTAGAAGGAGAAGCGCT 59.539 45.833 2.64 2.64 0.00 5.92
5035 5802 7.931948 CGTTCCTCCTAATGAAAACCATATAGT 59.068 37.037 0.00 0.00 34.45 2.12
5049 5816 0.909623 CACCCACCGTTCCTCCTAAT 59.090 55.000 0.00 0.00 0.00 1.73
5050 5817 0.178926 TCACCCACCGTTCCTCCTAA 60.179 55.000 0.00 0.00 0.00 2.69
5051 5818 0.901580 GTCACCCACCGTTCCTCCTA 60.902 60.000 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.