Multiple sequence alignment - TraesCS5B01G491400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G491400 chr5B 100.000 3016 0 0 1 3016 659760625 659763640 0.000000e+00 5570.0
1 TraesCS5B01G491400 chr5B 89.272 783 71 7 1 778 143297714 143298488 0.000000e+00 968.0
2 TraesCS5B01G491400 chr5B 80.000 315 59 4 2372 2683 388983858 388984171 2.340000e-56 230.0
3 TraesCS5B01G491400 chr5A 88.838 878 57 16 1495 2366 651795251 651796093 0.000000e+00 1040.0
4 TraesCS5B01G491400 chr5A 92.029 414 26 3 2373 2780 641684924 641685336 2.610000e-160 575.0
5 TraesCS5B01G491400 chr5A 92.526 388 17 4 2635 3010 395881962 395881575 2.040000e-151 545.0
6 TraesCS5B01G491400 chr5A 87.328 363 40 1 2373 2729 374911043 374911405 7.780000e-111 411.0
7 TraesCS5B01G491400 chr5A 77.351 521 107 3 2373 2887 553168388 553168903 6.320000e-77 298.0
8 TraesCS5B01G491400 chr5A 89.956 229 17 3 783 1005 651793162 651793390 1.060000e-74 291.0
9 TraesCS5B01G491400 chr5A 91.534 189 11 5 2827 3010 641685332 641685520 3.860000e-64 255.0
10 TraesCS5B01G491400 chr5A 96.970 33 1 0 1435 1467 317345567 317345599 4.200000e-04 56.5
11 TraesCS5B01G491400 chr1D 95.566 654 17 3 2371 3012 53871898 53872551 0.000000e+00 1037.0
12 TraesCS5B01G491400 chr2B 90.063 795 67 6 1 783 781116716 781115922 0.000000e+00 1020.0
13 TraesCS5B01G491400 chr2B 86.490 792 91 15 3 783 157299119 157299905 0.000000e+00 856.0
14 TraesCS5B01G491400 chr2B 86.935 199 18 6 1228 1418 338749467 338749665 1.820000e-52 217.0
15 TraesCS5B01G491400 chr3B 93.588 655 28 4 2372 3012 751838136 751837482 0.000000e+00 965.0
16 TraesCS5B01G491400 chr3B 93.228 635 29 4 2390 3012 751853591 751852959 0.000000e+00 922.0
17 TraesCS5B01G491400 chr3B 87.374 198 17 5 1229 1418 630594351 630594154 1.410000e-53 220.0
18 TraesCS5B01G491400 chr1B 87.392 809 60 16 1 785 468502164 468501374 0.000000e+00 891.0
19 TraesCS5B01G491400 chr1B 85.606 792 99 13 1 783 666349959 666350744 0.000000e+00 817.0
20 TraesCS5B01G491400 chr6D 86.020 794 93 16 1 785 407209590 407210374 0.000000e+00 835.0
21 TraesCS5B01G491400 chr7A 89.666 658 55 4 2366 3010 42007220 42006563 0.000000e+00 826.0
22 TraesCS5B01G491400 chrUn 85.732 792 98 13 1 783 259905764 259904979 0.000000e+00 822.0
23 TraesCS5B01G491400 chrUn 85.606 792 99 13 1 783 310267250 310266465 0.000000e+00 817.0
24 TraesCS5B01G491400 chrUn 85.606 792 99 13 1 783 334995099 334995884 0.000000e+00 817.0
25 TraesCS5B01G491400 chrUn 85.714 217 18 11 1227 1433 87983402 87983189 1.820000e-52 217.0
26 TraesCS5B01G491400 chr3D 88.685 654 62 4 2371 3012 567513418 567512765 0.000000e+00 787.0
27 TraesCS5B01G491400 chr3D 89.535 172 10 5 1229 1392 581983445 581983616 8.470000e-51 211.0
28 TraesCS5B01G491400 chr4A 84.454 714 97 13 78 785 657083022 657082317 0.000000e+00 691.0
29 TraesCS5B01G491400 chr4A 86.486 222 28 2 2366 2585 585674956 585674735 3.000000e-60 243.0
30 TraesCS5B01G491400 chr2A 82.965 769 101 22 32 783 775208039 775207284 0.000000e+00 667.0
31 TraesCS5B01G491400 chr2A 87.907 215 16 7 1229 1434 303859439 303859226 8.350000e-61 244.0
32 TraesCS5B01G491400 chr1A 92.239 451 23 4 2373 2812 575565199 575564750 1.970000e-176 628.0
33 TraesCS5B01G491400 chr1A 83.406 229 34 4 2373 2599 574215896 574216122 3.050000e-50 209.0
34 TraesCS5B01G491400 chr1A 78.125 320 54 14 2372 2683 531593142 531592831 3.970000e-44 189.0
35 TraesCS5B01G491400 chr1A 91.667 48 3 1 2391 2437 128812550 128812503 6.980000e-07 65.8
36 TraesCS5B01G491400 chr5D 90.435 460 25 10 1929 2382 525392285 525392731 3.350000e-164 588.0
37 TraesCS5B01G491400 chr5D 89.819 442 29 11 1479 1916 525391785 525392214 1.220000e-153 553.0
38 TraesCS5B01G491400 chr5D 86.563 387 26 7 783 1154 525391420 525391795 1.300000e-108 403.0
39 TraesCS5B01G491400 chr7B 80.000 315 59 4 2372 2683 73000942 73000629 2.340000e-56 230.0
40 TraesCS5B01G491400 chr7B 82.949 217 26 10 1226 1433 560501034 560501248 5.130000e-43 185.0
41 TraesCS5B01G491400 chr7B 75.926 162 32 7 2395 2553 624787589 624787746 3.220000e-10 76.8
42 TraesCS5B01G491400 chr3A 86.603 209 26 2 1226 1433 686615575 686615368 2.340000e-56 230.0
43 TraesCS5B01G491400 chr6B 86.802 197 19 5 1229 1418 73159169 73158973 2.360000e-51 213.0
44 TraesCS5B01G491400 chr4B 83.562 219 21 13 1228 1433 59226348 59226564 1.100000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G491400 chr5B 659760625 659763640 3015 False 5570.000000 5570 100.0000 1 3016 1 chr5B.!!$F3 3015
1 TraesCS5B01G491400 chr5B 143297714 143298488 774 False 968.000000 968 89.2720 1 778 1 chr5B.!!$F1 777
2 TraesCS5B01G491400 chr5A 651793162 651796093 2931 False 665.500000 1040 89.3970 783 2366 2 chr5A.!!$F5 1583
3 TraesCS5B01G491400 chr5A 641684924 641685520 596 False 415.000000 575 91.7815 2373 3010 2 chr5A.!!$F4 637
4 TraesCS5B01G491400 chr5A 553168388 553168903 515 False 298.000000 298 77.3510 2373 2887 1 chr5A.!!$F3 514
5 TraesCS5B01G491400 chr1D 53871898 53872551 653 False 1037.000000 1037 95.5660 2371 3012 1 chr1D.!!$F1 641
6 TraesCS5B01G491400 chr2B 781115922 781116716 794 True 1020.000000 1020 90.0630 1 783 1 chr2B.!!$R1 782
7 TraesCS5B01G491400 chr2B 157299119 157299905 786 False 856.000000 856 86.4900 3 783 1 chr2B.!!$F1 780
8 TraesCS5B01G491400 chr3B 751837482 751838136 654 True 965.000000 965 93.5880 2372 3012 1 chr3B.!!$R2 640
9 TraesCS5B01G491400 chr3B 751852959 751853591 632 True 922.000000 922 93.2280 2390 3012 1 chr3B.!!$R3 622
10 TraesCS5B01G491400 chr1B 468501374 468502164 790 True 891.000000 891 87.3920 1 785 1 chr1B.!!$R1 784
11 TraesCS5B01G491400 chr1B 666349959 666350744 785 False 817.000000 817 85.6060 1 783 1 chr1B.!!$F1 782
12 TraesCS5B01G491400 chr6D 407209590 407210374 784 False 835.000000 835 86.0200 1 785 1 chr6D.!!$F1 784
13 TraesCS5B01G491400 chr7A 42006563 42007220 657 True 826.000000 826 89.6660 2366 3010 1 chr7A.!!$R1 644
14 TraesCS5B01G491400 chrUn 259904979 259905764 785 True 822.000000 822 85.7320 1 783 1 chrUn.!!$R2 782
15 TraesCS5B01G491400 chrUn 310266465 310267250 785 True 817.000000 817 85.6060 1 783 1 chrUn.!!$R3 782
16 TraesCS5B01G491400 chrUn 334995099 334995884 785 False 817.000000 817 85.6060 1 783 1 chrUn.!!$F1 782
17 TraesCS5B01G491400 chr3D 567512765 567513418 653 True 787.000000 787 88.6850 2371 3012 1 chr3D.!!$R1 641
18 TraesCS5B01G491400 chr4A 657082317 657083022 705 True 691.000000 691 84.4540 78 785 1 chr4A.!!$R2 707
19 TraesCS5B01G491400 chr2A 775207284 775208039 755 True 667.000000 667 82.9650 32 783 1 chr2A.!!$R2 751
20 TraesCS5B01G491400 chr5D 525391420 525392731 1311 False 514.666667 588 88.9390 783 2382 3 chr5D.!!$F1 1599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.729116 CATGTCATCCCAACGCAGAC 59.271 55.0 0.00 0.0 0.0 3.51 F
83 86 0.740737 GCACTGCGATAAGGCCAATT 59.259 50.0 5.01 0.0 0.0 2.32 F
1101 2869 0.736636 AGTGATCATTGTGGCATGCG 59.263 50.0 12.44 0.0 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1036 2803 0.471191 TAGCATGCCTGGACTGGATG 59.529 55.0 15.66 2.41 0.00 3.51 R
1509 3278 0.630134 TGTGGATTCATGGGCATGGA 59.370 50.0 0.00 0.00 39.24 3.41 R
2175 4007 0.660300 GCCAACAAGCTTACACGCAC 60.660 55.0 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.729116 CATGTCATCCCAACGCAGAC 59.271 55.000 0.00 0.00 0.00 3.51
83 86 0.740737 GCACTGCGATAAGGCCAATT 59.259 50.000 5.01 0.00 0.00 2.32
90 93 2.023673 CGATAAGGCCAATTCCTTGCA 58.976 47.619 5.01 0.00 45.51 4.08
214 217 3.134792 GCTCGCTCGTCCTCCTCA 61.135 66.667 0.00 0.00 0.00 3.86
551 569 2.815647 GTGGAAAGCGGCGAGGAG 60.816 66.667 12.98 0.00 0.00 3.69
631 671 2.890474 CGGCGCGCCAAATCTACT 60.890 61.111 45.26 0.00 35.37 2.57
686 727 2.394604 GCTTCCTGGTGCGGTAATC 58.605 57.895 0.00 0.00 0.00 1.75
792 840 6.093495 CGGTTGGAGATGCTCTAAATGTTTTA 59.907 38.462 0.00 0.00 33.06 1.52
829 877 3.258872 CAGATCTGATTTGGTTTTGGCCA 59.741 43.478 18.34 0.00 36.62 5.36
920 979 4.202010 GCAAGGTAATTACACCGCATCATT 60.202 41.667 17.16 0.00 43.84 2.57
954 1016 3.186001 GCATCAGCATCTATCAACTTCCG 59.814 47.826 0.00 0.00 41.58 4.30
958 1020 2.432146 AGCATCTATCAACTTCCGCTGA 59.568 45.455 0.00 0.00 0.00 4.26
1032 2799 4.959723 ACAAAAAGGCATTGTAACTGCAT 58.040 34.783 2.12 0.00 41.47 3.96
1033 2800 6.095432 ACAAAAAGGCATTGTAACTGCATA 57.905 33.333 2.12 0.00 41.47 3.14
1034 2801 6.158598 ACAAAAAGGCATTGTAACTGCATAG 58.841 36.000 2.12 0.00 41.47 2.23
1035 2802 6.015519 ACAAAAAGGCATTGTAACTGCATAGA 60.016 34.615 2.12 0.00 41.47 1.98
1036 2803 5.567138 AAAGGCATTGTAACTGCATAGAC 57.433 39.130 0.00 0.00 41.47 2.59
1037 2804 4.220693 AGGCATTGTAACTGCATAGACA 57.779 40.909 0.00 0.00 41.47 3.41
1038 2805 4.785301 AGGCATTGTAACTGCATAGACAT 58.215 39.130 0.00 0.00 41.47 3.06
1039 2806 4.818546 AGGCATTGTAACTGCATAGACATC 59.181 41.667 0.00 0.00 41.47 3.06
1040 2807 4.023707 GGCATTGTAACTGCATAGACATCC 60.024 45.833 0.00 0.00 41.47 3.51
1041 2808 4.576053 GCATTGTAACTGCATAGACATCCA 59.424 41.667 0.00 0.00 39.46 3.41
1042 2809 5.277683 GCATTGTAACTGCATAGACATCCAG 60.278 44.000 0.00 0.00 39.46 3.86
1053 2820 1.077212 ACATCCAGTCCAGGCATGC 60.077 57.895 9.90 9.90 0.00 4.06
1069 2836 1.386525 ATGCTAAACAGCGGCATGGG 61.387 55.000 1.45 0.00 37.69 4.00
1071 2838 2.034843 TAAACAGCGGCATGGGCA 59.965 55.556 1.45 0.00 43.71 5.36
1089 2856 2.627945 GCACCAAACCGATAGTGATCA 58.372 47.619 0.00 0.00 31.79 2.92
1097 2865 2.170397 ACCGATAGTGATCATTGTGGCA 59.830 45.455 0.00 0.00 31.78 4.92
1101 2869 0.736636 AGTGATCATTGTGGCATGCG 59.263 50.000 12.44 0.00 0.00 4.73
1106 2874 1.528129 TCATTGTGGCATGCGTGTTA 58.472 45.000 12.44 0.00 0.00 2.41
1107 2875 1.198867 TCATTGTGGCATGCGTGTTAC 59.801 47.619 12.44 7.66 0.00 2.50
1130 2898 5.415701 ACTTTGCATTACCAACAGAGGTATG 59.584 40.000 0.00 0.00 43.34 2.39
1153 2921 6.310941 TGGTATTCCAAACAATCTCCAAGAA 58.689 36.000 0.00 0.00 41.25 2.52
1154 2922 6.434028 TGGTATTCCAAACAATCTCCAAGAAG 59.566 38.462 0.00 0.00 41.25 2.85
1155 2923 6.434340 GGTATTCCAAACAATCTCCAAGAAGT 59.566 38.462 0.00 0.00 0.00 3.01
1156 2924 7.610305 GGTATTCCAAACAATCTCCAAGAAGTA 59.390 37.037 0.00 0.00 0.00 2.24
1157 2925 7.693969 ATTCCAAACAATCTCCAAGAAGTAG 57.306 36.000 0.00 0.00 0.00 2.57
1158 2926 6.187727 TCCAAACAATCTCCAAGAAGTAGT 57.812 37.500 0.00 0.00 0.00 2.73
1159 2927 7.311092 TCCAAACAATCTCCAAGAAGTAGTA 57.689 36.000 0.00 0.00 0.00 1.82
1160 2928 7.386851 TCCAAACAATCTCCAAGAAGTAGTAG 58.613 38.462 0.00 0.00 0.00 2.57
1161 2929 6.092807 CCAAACAATCTCCAAGAAGTAGTAGC 59.907 42.308 0.00 0.00 0.00 3.58
1162 2930 5.346181 ACAATCTCCAAGAAGTAGTAGCC 57.654 43.478 0.00 0.00 0.00 3.93
1163 2931 4.142138 ACAATCTCCAAGAAGTAGTAGCCG 60.142 45.833 0.00 0.00 0.00 5.52
1164 2932 1.749634 TCTCCAAGAAGTAGTAGCCGC 59.250 52.381 0.00 0.00 0.00 6.53
1165 2933 1.476891 CTCCAAGAAGTAGTAGCCGCA 59.523 52.381 0.00 0.00 0.00 5.69
1166 2934 1.476891 TCCAAGAAGTAGTAGCCGCAG 59.523 52.381 0.00 0.00 0.00 5.18
1167 2935 1.476891 CCAAGAAGTAGTAGCCGCAGA 59.523 52.381 0.00 0.00 0.00 4.26
1168 2936 2.101582 CCAAGAAGTAGTAGCCGCAGAT 59.898 50.000 0.00 0.00 0.00 2.90
1169 2937 3.430929 CCAAGAAGTAGTAGCCGCAGATT 60.431 47.826 0.00 0.00 0.00 2.40
1170 2938 3.444703 AGAAGTAGTAGCCGCAGATTG 57.555 47.619 0.00 0.00 0.00 2.67
1171 2939 2.761208 AGAAGTAGTAGCCGCAGATTGT 59.239 45.455 0.00 0.00 0.00 2.71
1172 2940 2.873133 AGTAGTAGCCGCAGATTGTC 57.127 50.000 0.00 0.00 0.00 3.18
1173 2941 2.100197 AGTAGTAGCCGCAGATTGTCA 58.900 47.619 0.00 0.00 0.00 3.58
1174 2942 2.099921 AGTAGTAGCCGCAGATTGTCAG 59.900 50.000 0.00 0.00 0.00 3.51
1175 2943 1.186200 AGTAGCCGCAGATTGTCAGA 58.814 50.000 0.00 0.00 0.00 3.27
1176 2944 1.759445 AGTAGCCGCAGATTGTCAGAT 59.241 47.619 0.00 0.00 0.00 2.90
1177 2945 2.169352 AGTAGCCGCAGATTGTCAGATT 59.831 45.455 0.00 0.00 0.00 2.40
1178 2946 1.376543 AGCCGCAGATTGTCAGATTG 58.623 50.000 0.00 0.00 0.00 2.67
1179 2947 1.065926 AGCCGCAGATTGTCAGATTGA 60.066 47.619 0.00 0.00 0.00 2.57
1194 2962 6.719365 GTCAGATTGACAACCATATTACTGC 58.281 40.000 4.42 0.00 46.22 4.40
1195 2963 6.540189 GTCAGATTGACAACCATATTACTGCT 59.460 38.462 4.42 0.00 46.22 4.24
1196 2964 7.710907 GTCAGATTGACAACCATATTACTGCTA 59.289 37.037 4.42 0.00 46.22 3.49
1197 2965 7.710907 TCAGATTGACAACCATATTACTGCTAC 59.289 37.037 0.00 0.00 0.00 3.58
1198 2966 7.712639 CAGATTGACAACCATATTACTGCTACT 59.287 37.037 0.00 0.00 0.00 2.57
1199 2967 8.924303 AGATTGACAACCATATTACTGCTACTA 58.076 33.333 0.00 0.00 0.00 1.82
1200 2968 9.712305 GATTGACAACCATATTACTGCTACTAT 57.288 33.333 0.00 0.00 0.00 2.12
1201 2969 9.712305 ATTGACAACCATATTACTGCTACTATC 57.288 33.333 0.00 0.00 0.00 2.08
1202 2970 8.478775 TGACAACCATATTACTGCTACTATCT 57.521 34.615 0.00 0.00 0.00 1.98
1203 2971 8.577296 TGACAACCATATTACTGCTACTATCTC 58.423 37.037 0.00 0.00 0.00 2.75
1204 2972 7.897864 ACAACCATATTACTGCTACTATCTCC 58.102 38.462 0.00 0.00 0.00 3.71
1205 2973 7.509318 ACAACCATATTACTGCTACTATCTCCA 59.491 37.037 0.00 0.00 0.00 3.86
1206 2974 8.535335 CAACCATATTACTGCTACTATCTCCAT 58.465 37.037 0.00 0.00 0.00 3.41
1207 2975 8.072321 ACCATATTACTGCTACTATCTCCATG 57.928 38.462 0.00 0.00 0.00 3.66
1208 2976 7.676043 ACCATATTACTGCTACTATCTCCATGT 59.324 37.037 0.00 0.00 0.00 3.21
1209 2977 8.194104 CCATATTACTGCTACTATCTCCATGTC 58.806 40.741 0.00 0.00 0.00 3.06
1210 2978 8.965819 CATATTACTGCTACTATCTCCATGTCT 58.034 37.037 0.00 0.00 0.00 3.41
1213 2981 6.832520 ACTGCTACTATCTCCATGTCTATG 57.167 41.667 0.00 0.00 0.00 2.23
1214 2982 6.547402 ACTGCTACTATCTCCATGTCTATGA 58.453 40.000 0.00 0.00 36.36 2.15
1215 2983 7.007116 ACTGCTACTATCTCCATGTCTATGAA 58.993 38.462 0.00 0.00 36.36 2.57
1216 2984 7.673504 ACTGCTACTATCTCCATGTCTATGAAT 59.326 37.037 0.00 0.00 36.36 2.57
1217 2985 8.060931 TGCTACTATCTCCATGTCTATGAATC 57.939 38.462 0.00 0.00 36.36 2.52
1218 2986 7.123397 TGCTACTATCTCCATGTCTATGAATCC 59.877 40.741 0.00 0.00 36.36 3.01
1219 2987 7.123397 GCTACTATCTCCATGTCTATGAATCCA 59.877 40.741 0.00 0.00 36.36 3.41
1220 2988 7.238486 ACTATCTCCATGTCTATGAATCCAC 57.762 40.000 0.00 0.00 36.36 4.02
1221 2989 6.784473 ACTATCTCCATGTCTATGAATCCACA 59.216 38.462 0.00 0.00 36.36 4.17
1222 2990 6.699242 ATCTCCATGTCTATGAATCCACAT 57.301 37.500 0.00 0.00 36.36 3.21
1223 2991 5.861727 TCTCCATGTCTATGAATCCACATG 58.138 41.667 4.27 4.27 43.85 3.21
1224 2992 4.392047 TCCATGTCTATGAATCCACATGC 58.608 43.478 5.54 0.00 43.20 4.06
1235 3003 2.848678 TCCACATGCTAGTACTCCCT 57.151 50.000 0.00 0.00 0.00 4.20
1236 3004 2.667470 TCCACATGCTAGTACTCCCTC 58.333 52.381 0.00 0.00 0.00 4.30
1237 3005 1.689273 CCACATGCTAGTACTCCCTCC 59.311 57.143 0.00 0.00 0.00 4.30
1238 3006 1.338337 CACATGCTAGTACTCCCTCCG 59.662 57.143 0.00 0.00 0.00 4.63
1239 3007 1.063867 ACATGCTAGTACTCCCTCCGT 60.064 52.381 0.00 0.00 0.00 4.69
1241 3009 1.760192 TGCTAGTACTCCCTCCGTTC 58.240 55.000 0.00 0.00 0.00 3.95
1243 3011 1.409942 GCTAGTACTCCCTCCGTTCCT 60.410 57.143 0.00 0.00 0.00 3.36
1245 3013 3.686691 GCTAGTACTCCCTCCGTTCCTAA 60.687 52.174 0.00 0.00 0.00 2.69
1246 3014 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1247 3015 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1249 3017 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1250 3018 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
1251 3019 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1252 3020 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1253 3021 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1256 3024 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1258 3026 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1259 3027 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1260 3028 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1261 3029 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1262 3030 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
1276 3044 9.684448 TTGTCTTTCTAGAGATATCAATAAGCG 57.316 33.333 5.32 0.00 0.00 4.68
1277 3045 9.067986 TGTCTTTCTAGAGATATCAATAAGCGA 57.932 33.333 5.32 0.00 0.00 4.93
1278 3046 9.337091 GTCTTTCTAGAGATATCAATAAGCGAC 57.663 37.037 5.32 0.00 0.00 5.19
1279 3047 9.290988 TCTTTCTAGAGATATCAATAAGCGACT 57.709 33.333 5.32 0.00 0.00 4.18
1282 3050 9.503399 TTCTAGAGATATCAATAAGCGACTACA 57.497 33.333 5.32 0.00 0.00 2.74
1283 3051 8.937884 TCTAGAGATATCAATAAGCGACTACAC 58.062 37.037 5.32 0.00 0.00 2.90
1284 3052 7.511959 AGAGATATCAATAAGCGACTACACA 57.488 36.000 5.32 0.00 0.00 3.72
1285 3053 7.941919 AGAGATATCAATAAGCGACTACACAA 58.058 34.615 5.32 0.00 0.00 3.33
1286 3054 8.414003 AGAGATATCAATAAGCGACTACACAAA 58.586 33.333 5.32 0.00 0.00 2.83
1287 3055 8.942338 AGATATCAATAAGCGACTACACAAAA 57.058 30.769 5.32 0.00 0.00 2.44
1288 3056 8.818057 AGATATCAATAAGCGACTACACAAAAC 58.182 33.333 5.32 0.00 0.00 2.43
1289 3057 5.258685 TCAATAAGCGACTACACAAAACG 57.741 39.130 0.00 0.00 0.00 3.60
1290 3058 4.983538 TCAATAAGCGACTACACAAAACGA 59.016 37.500 0.00 0.00 0.00 3.85
1291 3059 5.118050 TCAATAAGCGACTACACAAAACGAG 59.882 40.000 0.00 0.00 0.00 4.18
1292 3060 2.503920 AGCGACTACACAAAACGAGT 57.496 45.000 0.00 0.00 0.00 4.18
1293 3061 2.124903 AGCGACTACACAAAACGAGTG 58.875 47.619 0.00 0.00 42.56 3.51
1294 3062 2.121786 GCGACTACACAAAACGAGTGA 58.878 47.619 0.00 0.00 40.16 3.41
1295 3063 2.536803 GCGACTACACAAAACGAGTGAA 59.463 45.455 0.00 0.00 40.16 3.18
1296 3064 3.183775 GCGACTACACAAAACGAGTGAAT 59.816 43.478 0.00 0.00 40.16 2.57
1297 3065 4.663389 GCGACTACACAAAACGAGTGAATC 60.663 45.833 0.00 0.00 40.16 2.52
1298 3066 4.680110 CGACTACACAAAACGAGTGAATCT 59.320 41.667 0.00 0.00 40.16 2.40
1299 3067 5.854866 CGACTACACAAAACGAGTGAATCTA 59.145 40.000 0.00 0.00 40.16 1.98
1300 3068 6.183359 CGACTACACAAAACGAGTGAATCTAC 60.183 42.308 0.00 0.00 40.16 2.59
1301 3069 6.509656 ACTACACAAAACGAGTGAATCTACA 58.490 36.000 0.00 0.00 40.16 2.74
1302 3070 7.152645 ACTACACAAAACGAGTGAATCTACAT 58.847 34.615 0.00 0.00 40.16 2.29
1303 3071 6.861065 ACACAAAACGAGTGAATCTACATT 57.139 33.333 0.00 0.00 40.16 2.71
1304 3072 6.888430 ACACAAAACGAGTGAATCTACATTC 58.112 36.000 0.00 0.00 40.16 2.67
1305 3073 6.706270 ACACAAAACGAGTGAATCTACATTCT 59.294 34.615 0.00 0.00 39.49 2.40
1306 3074 7.870954 ACACAAAACGAGTGAATCTACATTCTA 59.129 33.333 0.00 0.00 39.49 2.10
1307 3075 8.708742 CACAAAACGAGTGAATCTACATTCTAA 58.291 33.333 0.00 0.00 39.49 2.10
1308 3076 9.268268 ACAAAACGAGTGAATCTACATTCTAAA 57.732 29.630 0.00 0.00 39.49 1.85
1344 3112 6.726490 ACATCCGTATGTAGTAGTCCATTT 57.274 37.500 0.00 0.00 44.66 2.32
1345 3113 6.513180 ACATCCGTATGTAGTAGTCCATTTG 58.487 40.000 0.00 0.00 44.66 2.32
1346 3114 6.322969 ACATCCGTATGTAGTAGTCCATTTGA 59.677 38.462 0.00 0.00 44.66 2.69
1347 3115 6.778834 TCCGTATGTAGTAGTCCATTTGAA 57.221 37.500 0.00 0.00 0.00 2.69
1348 3116 7.172868 TCCGTATGTAGTAGTCCATTTGAAA 57.827 36.000 0.00 0.00 0.00 2.69
1349 3117 7.788026 TCCGTATGTAGTAGTCCATTTGAAAT 58.212 34.615 0.00 0.00 0.00 2.17
1350 3118 8.262227 TCCGTATGTAGTAGTCCATTTGAAATT 58.738 33.333 0.00 0.00 0.00 1.82
1351 3119 8.548721 CCGTATGTAGTAGTCCATTTGAAATTC 58.451 37.037 0.00 0.00 0.00 2.17
1352 3120 9.314321 CGTATGTAGTAGTCCATTTGAAATTCT 57.686 33.333 0.00 0.00 0.00 2.40
1373 3141 8.809468 ATTCTAAAAAGACAAATACTCCCTCC 57.191 34.615 0.00 0.00 0.00 4.30
1374 3142 6.403878 TCTAAAAAGACAAATACTCCCTCCG 58.596 40.000 0.00 0.00 0.00 4.63
1375 3143 4.635699 AAAAGACAAATACTCCCTCCGT 57.364 40.909 0.00 0.00 0.00 4.69
1376 3144 3.889520 AAGACAAATACTCCCTCCGTC 57.110 47.619 0.00 0.00 0.00 4.79
1377 3145 2.108970 AGACAAATACTCCCTCCGTCC 58.891 52.381 0.00 0.00 0.00 4.79
1378 3146 1.138464 GACAAATACTCCCTCCGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
1379 3147 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
1380 3148 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
1381 3149 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
1382 3150 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1383 3151 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1384 3152 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1385 3153 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1386 3154 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1387 3155 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1388 3156 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
1389 3157 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
1390 3158 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1391 3159 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1392 3160 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1393 3161 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1394 3162 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
1395 3163 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
1396 3164 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
1397 3165 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
1398 3166 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
1399 3167 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
1400 3168 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1401 3169 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
1402 3170 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
1410 3178 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
1411 3179 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
1413 3181 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
1414 3182 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
1419 3187 8.647796 AGATTTGTCTAAATACGGATGTATCCA 58.352 33.333 11.23 0.00 40.42 3.41
1420 3188 8.833231 ATTTGTCTAAATACGGATGTATCCAG 57.167 34.615 11.23 6.49 40.42 3.86
1421 3189 8.429641 ATTTGTCTAAATACGGATGTATCCAGT 58.570 33.333 11.23 11.23 40.42 4.00
1434 3202 8.958119 GGATGTATCCAGTTACATTTTAGTGA 57.042 34.615 6.03 0.00 46.38 3.41
1435 3203 8.827677 GGATGTATCCAGTTACATTTTAGTGAC 58.172 37.037 6.03 0.00 46.38 3.67
1436 3204 7.821595 TGTATCCAGTTACATTTTAGTGACG 57.178 36.000 0.00 0.00 33.67 4.35
1437 3205 6.814644 TGTATCCAGTTACATTTTAGTGACGG 59.185 38.462 0.00 0.00 33.67 4.79
1438 3206 5.471556 TCCAGTTACATTTTAGTGACGGA 57.528 39.130 0.00 0.00 33.67 4.69
1439 3207 5.475719 TCCAGTTACATTTTAGTGACGGAG 58.524 41.667 0.00 0.00 33.67 4.63
1440 3208 4.630069 CCAGTTACATTTTAGTGACGGAGG 59.370 45.833 0.00 0.00 33.67 4.30
1441 3209 4.630069 CAGTTACATTTTAGTGACGGAGGG 59.370 45.833 0.00 0.00 33.67 4.30
1442 3210 4.529377 AGTTACATTTTAGTGACGGAGGGA 59.471 41.667 0.00 0.00 33.67 4.20
1443 3211 3.611766 ACATTTTAGTGACGGAGGGAG 57.388 47.619 0.00 0.00 0.00 4.30
1444 3212 2.904434 ACATTTTAGTGACGGAGGGAGT 59.096 45.455 0.00 0.00 0.00 3.85
1445 3213 4.091549 ACATTTTAGTGACGGAGGGAGTA 58.908 43.478 0.00 0.00 0.00 2.59
1446 3214 4.715297 ACATTTTAGTGACGGAGGGAGTAT 59.285 41.667 0.00 0.00 0.00 2.12
1447 3215 5.189145 ACATTTTAGTGACGGAGGGAGTATT 59.811 40.000 0.00 0.00 0.00 1.89
1448 3216 5.750352 TTTTAGTGACGGAGGGAGTATTT 57.250 39.130 0.00 0.00 0.00 1.40
1449 3217 6.855763 TTTTAGTGACGGAGGGAGTATTTA 57.144 37.500 0.00 0.00 0.00 1.40
1450 3218 6.461110 TTTAGTGACGGAGGGAGTATTTAG 57.539 41.667 0.00 0.00 0.00 1.85
1451 3219 4.246712 AGTGACGGAGGGAGTATTTAGA 57.753 45.455 0.00 0.00 0.00 2.10
1452 3220 4.607239 AGTGACGGAGGGAGTATTTAGAA 58.393 43.478 0.00 0.00 0.00 2.10
1453 3221 5.021458 AGTGACGGAGGGAGTATTTAGAAA 58.979 41.667 0.00 0.00 0.00 2.52
1454 3222 5.105432 AGTGACGGAGGGAGTATTTAGAAAC 60.105 44.000 0.00 0.00 0.00 2.78
1455 3223 4.142315 TGACGGAGGGAGTATTTAGAAACG 60.142 45.833 0.00 0.00 0.00 3.60
1456 3224 3.131755 ACGGAGGGAGTATTTAGAAACGG 59.868 47.826 0.00 0.00 0.00 4.44
1457 3225 3.382546 CGGAGGGAGTATTTAGAAACGGA 59.617 47.826 0.00 0.00 0.00 4.69
1458 3226 4.038883 CGGAGGGAGTATTTAGAAACGGAT 59.961 45.833 0.00 0.00 0.00 4.18
1459 3227 5.298347 GGAGGGAGTATTTAGAAACGGATG 58.702 45.833 0.00 0.00 0.00 3.51
1460 3228 5.291905 AGGGAGTATTTAGAAACGGATGG 57.708 43.478 0.00 0.00 0.00 3.51
1461 3229 4.966805 AGGGAGTATTTAGAAACGGATGGA 59.033 41.667 0.00 0.00 0.00 3.41
1462 3230 5.070580 AGGGAGTATTTAGAAACGGATGGAG 59.929 44.000 0.00 0.00 0.00 3.86
1463 3231 5.163332 GGGAGTATTTAGAAACGGATGGAGT 60.163 44.000 0.00 0.00 0.00 3.85
1464 3232 6.041296 GGGAGTATTTAGAAACGGATGGAGTA 59.959 42.308 0.00 0.00 0.00 2.59
1465 3233 7.256225 GGGAGTATTTAGAAACGGATGGAGTAT 60.256 40.741 0.00 0.00 0.00 2.12
1466 3234 8.800332 GGAGTATTTAGAAACGGATGGAGTATA 58.200 37.037 0.00 0.00 0.00 1.47
1498 3267 1.842052 TGTCCATGAATGCACATGCT 58.158 45.000 10.95 0.00 44.11 3.79
1500 3269 2.946990 TGTCCATGAATGCACATGCTAG 59.053 45.455 10.95 0.20 44.11 3.42
1501 3270 2.947652 GTCCATGAATGCACATGCTAGT 59.052 45.455 10.95 0.00 44.11 2.57
1502 3271 4.129380 GTCCATGAATGCACATGCTAGTA 58.871 43.478 10.95 0.00 44.11 1.82
1503 3272 4.758674 GTCCATGAATGCACATGCTAGTAT 59.241 41.667 10.95 0.00 44.11 2.12
1504 3273 5.240183 GTCCATGAATGCACATGCTAGTATT 59.760 40.000 10.95 0.00 44.11 1.89
1506 3275 6.997476 TCCATGAATGCACATGCTAGTATTTA 59.003 34.615 10.95 0.00 44.11 1.40
1507 3276 7.666804 TCCATGAATGCACATGCTAGTATTTAT 59.333 33.333 10.95 0.00 44.11 1.40
1508 3277 7.966753 CCATGAATGCACATGCTAGTATTTATC 59.033 37.037 10.95 0.00 44.11 1.75
1509 3278 8.727910 CATGAATGCACATGCTAGTATTTATCT 58.272 33.333 5.31 0.00 40.54 1.98
1511 3280 7.388776 TGAATGCACATGCTAGTATTTATCTCC 59.611 37.037 5.31 0.00 42.66 3.71
1512 3281 6.173427 TGCACATGCTAGTATTTATCTCCA 57.827 37.500 5.31 0.00 42.66 3.86
1514 3283 6.652062 TGCACATGCTAGTATTTATCTCCATG 59.348 38.462 5.31 0.00 42.66 3.66
1515 3284 6.402983 GCACATGCTAGTATTTATCTCCATGC 60.403 42.308 0.00 0.00 38.21 4.06
1516 3285 6.093219 CACATGCTAGTATTTATCTCCATGCC 59.907 42.308 0.00 0.00 32.82 4.40
1517 3286 5.165961 TGCTAGTATTTATCTCCATGCCC 57.834 43.478 0.00 0.00 0.00 5.36
1518 3287 4.597075 TGCTAGTATTTATCTCCATGCCCA 59.403 41.667 0.00 0.00 0.00 5.36
1519 3288 5.251468 TGCTAGTATTTATCTCCATGCCCAT 59.749 40.000 0.00 0.00 0.00 4.00
1520 3289 5.587844 GCTAGTATTTATCTCCATGCCCATG 59.412 44.000 1.28 1.28 38.51 3.66
1521 3290 5.848286 AGTATTTATCTCCATGCCCATGA 57.152 39.130 9.73 0.00 41.20 3.07
1522 3291 6.204852 AGTATTTATCTCCATGCCCATGAA 57.795 37.500 9.73 0.00 41.20 2.57
1523 3292 6.797707 AGTATTTATCTCCATGCCCATGAAT 58.202 36.000 9.73 3.54 41.20 2.57
1524 3293 6.888632 AGTATTTATCTCCATGCCCATGAATC 59.111 38.462 9.73 0.00 41.20 2.52
1525 3294 2.599408 ATCTCCATGCCCATGAATCC 57.401 50.000 9.73 0.00 41.20 3.01
1526 3295 1.224436 TCTCCATGCCCATGAATCCA 58.776 50.000 9.73 0.00 41.20 3.41
1527 3296 1.133699 TCTCCATGCCCATGAATCCAC 60.134 52.381 9.73 0.00 41.20 4.02
1528 3297 0.630134 TCCATGCCCATGAATCCACA 59.370 50.000 9.73 0.00 41.20 4.17
1529 3298 1.006878 TCCATGCCCATGAATCCACAA 59.993 47.619 9.73 0.00 41.20 3.33
1530 3299 1.137479 CCATGCCCATGAATCCACAAC 59.863 52.381 9.73 0.00 41.20 3.32
1531 3300 1.826096 CATGCCCATGAATCCACAACA 59.174 47.619 2.09 0.00 41.20 3.33
1532 3301 2.234896 TGCCCATGAATCCACAACAT 57.765 45.000 0.00 0.00 0.00 2.71
1533 3302 1.826096 TGCCCATGAATCCACAACATG 59.174 47.619 0.00 0.00 40.39 3.21
1534 3303 1.472026 GCCCATGAATCCACAACATGC 60.472 52.381 0.00 0.00 39.68 4.06
1535 3304 1.137479 CCCATGAATCCACAACATGCC 59.863 52.381 0.00 0.00 39.68 4.40
1536 3305 1.826096 CCATGAATCCACAACATGCCA 59.174 47.619 0.00 0.00 39.68 4.92
1537 3306 2.432874 CCATGAATCCACAACATGCCAT 59.567 45.455 0.00 0.00 39.68 4.40
1538 3307 3.118555 CCATGAATCCACAACATGCCATT 60.119 43.478 0.00 0.00 39.68 3.16
1539 3308 3.872511 TGAATCCACAACATGCCATTC 57.127 42.857 0.00 0.00 31.27 2.67
1540 3309 3.163467 TGAATCCACAACATGCCATTCA 58.837 40.909 0.00 0.00 35.35 2.57
1541 3310 3.056678 TGAATCCACAACATGCCATTCAC 60.057 43.478 0.00 0.00 33.93 3.18
1542 3311 2.291209 TCCACAACATGCCATTCACT 57.709 45.000 0.00 0.00 0.00 3.41
1543 3312 1.887854 TCCACAACATGCCATTCACTG 59.112 47.619 0.00 0.00 0.00 3.66
1544 3313 1.887854 CCACAACATGCCATTCACTGA 59.112 47.619 0.00 0.00 0.00 3.41
1545 3314 2.352030 CCACAACATGCCATTCACTGAC 60.352 50.000 0.00 0.00 0.00 3.51
1546 3315 2.555325 CACAACATGCCATTCACTGACT 59.445 45.455 0.00 0.00 0.00 3.41
1547 3316 2.816087 ACAACATGCCATTCACTGACTC 59.184 45.455 0.00 0.00 0.00 3.36
1548 3317 1.730501 ACATGCCATTCACTGACTCG 58.269 50.000 0.00 0.00 0.00 4.18
1572 3341 1.403679 CCTTTTCAGGTGTTCACGCAA 59.596 47.619 0.00 0.00 35.06 4.85
1577 3346 0.317269 CAGGTGTTCACGCAAGCAAG 60.317 55.000 0.00 0.00 45.62 4.01
1589 3358 0.248498 CAAGCAAGGCAGATGCATCG 60.248 55.000 20.67 16.00 46.22 3.84
1590 3359 0.393402 AAGCAAGGCAGATGCATCGA 60.393 50.000 20.67 0.00 46.22 3.59
1591 3360 1.094073 AGCAAGGCAGATGCATCGAC 61.094 55.000 20.67 17.10 46.22 4.20
1592 3361 1.371337 GCAAGGCAGATGCATCGACA 61.371 55.000 20.67 0.00 43.29 4.35
1593 3362 1.306148 CAAGGCAGATGCATCGACAT 58.694 50.000 20.67 11.78 44.36 3.06
1594 3363 1.263484 CAAGGCAGATGCATCGACATC 59.737 52.381 20.67 7.72 45.62 3.06
1629 3398 1.583967 GATCTCGTCGTCAGCACGG 60.584 63.158 0.00 0.00 46.70 4.94
1690 3459 1.264020 GAGCGTGATCAACACTTGCAA 59.736 47.619 0.00 0.00 46.24 4.08
1691 3460 1.265095 AGCGTGATCAACACTTGCAAG 59.735 47.619 24.84 24.84 46.24 4.01
1718 3487 2.156917 CAGAAGAACATCAAGCTGGCA 58.843 47.619 0.00 0.00 0.00 4.92
1734 3503 3.451894 CATGCCCGGGCTTCAACC 61.452 66.667 43.34 16.20 42.51 3.77
1750 3519 2.567169 TCAACCACTCCATCGATGTCTT 59.433 45.455 23.27 4.46 0.00 3.01
1872 3641 1.227943 AGCGCAACCTTCAGCTTCA 60.228 52.632 11.47 0.00 36.41 3.02
1959 3786 7.307219 GGTCTTATGATTGTACCGTAAATCTGC 60.307 40.741 5.54 0.00 34.52 4.26
1982 3809 6.148264 GCTTCCTTTGAGACAAGAAAATCTG 58.852 40.000 0.00 0.00 0.00 2.90
2010 3837 2.094675 TCTGGCAATAAGAGCTTTGGC 58.905 47.619 13.84 13.84 45.62 4.52
2023 3850 1.925946 GCTTTGGCGTGTAACTGCAAG 60.926 52.381 0.00 0.00 37.93 4.01
2103 3935 4.291540 TGCAGCTTATAATTTTCAGCGG 57.708 40.909 0.00 0.00 37.35 5.52
2302 4134 6.849151 ACAGAAATTGGGTACTCTTAAGGTT 58.151 36.000 1.85 0.00 0.00 3.50
2329 4161 5.755409 TTTAATGGTGCCTCTAACTCTCA 57.245 39.130 0.00 0.00 0.00 3.27
2473 4307 2.990967 CAAACATGGCGGCCACCT 60.991 61.111 26.48 6.57 35.80 4.00
2801 4645 0.398696 ACGACATACTGCCCCAACAA 59.601 50.000 0.00 0.00 0.00 2.83
2817 4661 4.323417 CCAACAACACCATACTTAGCTCA 58.677 43.478 0.00 0.00 0.00 4.26
2948 4843 2.169832 TGCACTAACTTCAGCCAGAC 57.830 50.000 0.00 0.00 0.00 3.51
2972 4867 4.037690 GCTCGTGATGAAACCATTTATGC 58.962 43.478 0.00 0.00 0.00 3.14
2982 4877 0.746063 CCATTTATGCCATGCGGTGT 59.254 50.000 0.00 0.00 33.28 4.16
3012 4913 6.655003 TCTTCATAAATCGCTTTTCTCCTTGT 59.345 34.615 0.00 0.00 0.00 3.16
3013 4914 6.422776 TCATAAATCGCTTTTCTCCTTGTC 57.577 37.500 0.00 0.00 0.00 3.18
3014 4915 6.173339 TCATAAATCGCTTTTCTCCTTGTCT 58.827 36.000 0.00 0.00 0.00 3.41
3015 4916 7.327975 TCATAAATCGCTTTTCTCCTTGTCTA 58.672 34.615 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.144057 CGATCTTCTCCCCCAACGG 59.856 63.158 0.00 0.00 0.00 4.44
83 86 4.680237 CAGGCGTCGGTGCAAGGA 62.680 66.667 0.00 0.00 36.28 3.36
535 539 4.082523 CCTCCTCGCCGCTTTCCA 62.083 66.667 0.00 0.00 0.00 3.53
591 631 1.860078 GCGCGCGCCTATAAAATCT 59.140 52.632 42.83 0.00 34.56 2.40
674 714 2.897207 CGGGAGATTACCGCACCA 59.103 61.111 0.00 0.00 45.34 4.17
760 805 4.388499 ATCTCCAACCGGCGCGTT 62.388 61.111 8.43 4.46 0.00 4.84
854 910 6.931838 TGTTGTACGGAAAGAGATTGATACT 58.068 36.000 0.00 0.00 0.00 2.12
954 1016 6.128526 GGCTATTTATAGGACAACGAATCAGC 60.129 42.308 0.00 0.00 0.00 4.26
958 1020 7.680730 AGATGGCTATTTATAGGACAACGAAT 58.319 34.615 0.00 0.00 0.00 3.34
1032 2799 1.764723 CATGCCTGGACTGGATGTCTA 59.235 52.381 0.00 0.00 44.74 2.59
1033 2800 0.545171 CATGCCTGGACTGGATGTCT 59.455 55.000 0.00 0.00 44.74 3.41
1034 2801 1.099879 GCATGCCTGGACTGGATGTC 61.100 60.000 6.36 0.00 44.63 3.06
1035 2802 1.077212 GCATGCCTGGACTGGATGT 60.077 57.895 6.36 0.00 0.00 3.06
1036 2803 0.471191 TAGCATGCCTGGACTGGATG 59.529 55.000 15.66 2.41 0.00 3.51
1037 2804 1.216064 TTAGCATGCCTGGACTGGAT 58.784 50.000 15.66 0.00 0.00 3.41
1038 2805 0.991146 TTTAGCATGCCTGGACTGGA 59.009 50.000 15.66 0.00 0.00 3.86
1039 2806 1.098050 GTTTAGCATGCCTGGACTGG 58.902 55.000 15.66 0.00 0.00 4.00
1040 2807 1.741706 CTGTTTAGCATGCCTGGACTG 59.258 52.381 15.66 8.59 0.00 3.51
1041 2808 2.119801 CTGTTTAGCATGCCTGGACT 57.880 50.000 15.66 0.00 0.00 3.85
1053 2820 2.045708 TGCCCATGCCGCTGTTTAG 61.046 57.895 4.84 0.00 36.33 1.85
1069 2836 2.627945 TGATCACTATCGGTTTGGTGC 58.372 47.619 0.00 0.00 34.60 5.01
1071 2838 4.635765 CACAATGATCACTATCGGTTTGGT 59.364 41.667 0.00 0.00 34.60 3.67
1078 2845 3.364664 GCATGCCACAATGATCACTATCG 60.365 47.826 6.36 0.00 34.60 2.92
1079 2846 3.364664 CGCATGCCACAATGATCACTATC 60.365 47.826 13.15 0.00 0.00 2.08
1089 2856 1.533625 AGTAACACGCATGCCACAAT 58.466 45.000 13.15 0.00 0.00 2.71
1097 2865 3.504134 TGGTAATGCAAAGTAACACGCAT 59.496 39.130 0.00 0.00 46.66 4.73
1101 2869 6.067263 TCTGTTGGTAATGCAAAGTAACAC 57.933 37.500 0.00 0.00 0.00 3.32
1106 2874 3.832527 ACCTCTGTTGGTAATGCAAAGT 58.167 40.909 0.00 0.00 38.79 2.66
1107 2875 5.163622 CCATACCTCTGTTGGTAATGCAAAG 60.164 44.000 0.00 0.00 44.65 2.77
1130 2898 6.434340 ACTTCTTGGAGATTGTTTGGAATACC 59.566 38.462 0.00 0.00 0.00 2.73
1153 2921 2.099921 CTGACAATCTGCGGCTACTACT 59.900 50.000 0.00 0.00 0.00 2.57
1154 2922 2.099263 TCTGACAATCTGCGGCTACTAC 59.901 50.000 0.00 0.00 0.00 2.73
1155 2923 2.375146 TCTGACAATCTGCGGCTACTA 58.625 47.619 0.00 0.00 0.00 1.82
1156 2924 1.186200 TCTGACAATCTGCGGCTACT 58.814 50.000 0.00 0.00 0.00 2.57
1157 2925 2.231215 ATCTGACAATCTGCGGCTAC 57.769 50.000 0.00 0.00 0.00 3.58
1158 2926 2.168313 TCAATCTGACAATCTGCGGCTA 59.832 45.455 0.00 0.00 0.00 3.93
1159 2927 1.065926 TCAATCTGACAATCTGCGGCT 60.066 47.619 0.00 0.00 0.00 5.52
1160 2928 1.063174 GTCAATCTGACAATCTGCGGC 59.937 52.381 1.92 0.00 46.22 6.53
1170 2938 7.710907 TAGCAGTAATATGGTTGTCAATCTGAC 59.289 37.037 0.00 0.00 38.65 3.51
1171 2939 6.653020 AGCAGTAATATGGTTGTCAATCTGA 58.347 36.000 0.00 0.00 0.00 3.27
1172 2940 6.932356 AGCAGTAATATGGTTGTCAATCTG 57.068 37.500 0.00 0.00 0.00 2.90
1173 2941 7.796054 AGTAGCAGTAATATGGTTGTCAATCT 58.204 34.615 0.00 0.00 32.19 2.40
1174 2942 9.712305 ATAGTAGCAGTAATATGGTTGTCAATC 57.288 33.333 0.00 0.00 32.19 2.67
1175 2943 9.712305 GATAGTAGCAGTAATATGGTTGTCAAT 57.288 33.333 0.00 0.00 32.19 2.57
1176 2944 8.924303 AGATAGTAGCAGTAATATGGTTGTCAA 58.076 33.333 0.00 0.00 32.19 3.18
1177 2945 8.478775 AGATAGTAGCAGTAATATGGTTGTCA 57.521 34.615 0.00 0.00 32.19 3.58
1178 2946 8.030106 GGAGATAGTAGCAGTAATATGGTTGTC 58.970 40.741 0.00 0.00 32.19 3.18
1179 2947 7.509318 TGGAGATAGTAGCAGTAATATGGTTGT 59.491 37.037 0.00 0.00 32.19 3.32
1180 2948 7.896811 TGGAGATAGTAGCAGTAATATGGTTG 58.103 38.462 0.00 0.00 32.19 3.77
1181 2949 8.535335 CATGGAGATAGTAGCAGTAATATGGTT 58.465 37.037 0.00 0.00 32.19 3.67
1182 2950 7.676043 ACATGGAGATAGTAGCAGTAATATGGT 59.324 37.037 0.00 0.00 34.71 3.55
1183 2951 8.072321 ACATGGAGATAGTAGCAGTAATATGG 57.928 38.462 0.00 0.00 0.00 2.74
1184 2952 8.965819 AGACATGGAGATAGTAGCAGTAATATG 58.034 37.037 0.00 0.00 0.00 1.78
1187 2955 8.965819 CATAGACATGGAGATAGTAGCAGTAAT 58.034 37.037 0.00 0.00 0.00 1.89
1188 2956 8.164070 TCATAGACATGGAGATAGTAGCAGTAA 58.836 37.037 0.00 0.00 32.61 2.24
1189 2957 7.690256 TCATAGACATGGAGATAGTAGCAGTA 58.310 38.462 0.00 0.00 32.61 2.74
1190 2958 6.547402 TCATAGACATGGAGATAGTAGCAGT 58.453 40.000 0.00 0.00 32.61 4.40
1191 2959 7.459795 TTCATAGACATGGAGATAGTAGCAG 57.540 40.000 0.00 0.00 32.61 4.24
1192 2960 7.123397 GGATTCATAGACATGGAGATAGTAGCA 59.877 40.741 0.00 0.00 32.61 3.49
1193 2961 7.123397 TGGATTCATAGACATGGAGATAGTAGC 59.877 40.741 0.00 0.00 32.61 3.58
1194 2962 8.465999 GTGGATTCATAGACATGGAGATAGTAG 58.534 40.741 0.00 0.00 32.61 2.57
1195 2963 7.950124 TGTGGATTCATAGACATGGAGATAGTA 59.050 37.037 0.00 0.00 32.61 1.82
1196 2964 6.784473 TGTGGATTCATAGACATGGAGATAGT 59.216 38.462 0.00 0.00 32.61 2.12
1197 2965 7.237209 TGTGGATTCATAGACATGGAGATAG 57.763 40.000 0.00 0.00 32.61 2.08
1198 2966 7.618137 CATGTGGATTCATAGACATGGAGATA 58.382 38.462 0.00 0.00 41.25 1.98
1199 2967 6.473758 CATGTGGATTCATAGACATGGAGAT 58.526 40.000 0.00 0.00 41.25 2.75
1200 2968 5.744007 GCATGTGGATTCATAGACATGGAGA 60.744 44.000 11.73 0.00 43.86 3.71
1201 2969 4.454847 GCATGTGGATTCATAGACATGGAG 59.545 45.833 11.73 0.00 43.86 3.86
1202 2970 4.103627 AGCATGTGGATTCATAGACATGGA 59.896 41.667 11.73 0.00 43.86 3.41
1203 2971 4.395625 AGCATGTGGATTCATAGACATGG 58.604 43.478 11.73 0.00 43.86 3.66
1204 2972 6.228995 ACTAGCATGTGGATTCATAGACATG 58.771 40.000 0.00 0.00 45.60 3.21
1205 2973 6.430962 ACTAGCATGTGGATTCATAGACAT 57.569 37.500 0.00 0.00 0.00 3.06
1206 2974 5.876651 ACTAGCATGTGGATTCATAGACA 57.123 39.130 0.00 0.00 0.00 3.41
1207 2975 6.987386 AGTACTAGCATGTGGATTCATAGAC 58.013 40.000 0.00 0.00 0.00 2.59
1208 2976 6.209589 GGAGTACTAGCATGTGGATTCATAGA 59.790 42.308 0.00 0.00 0.00 1.98
1209 2977 6.393990 GGAGTACTAGCATGTGGATTCATAG 58.606 44.000 0.00 0.00 0.00 2.23
1210 2978 5.246203 GGGAGTACTAGCATGTGGATTCATA 59.754 44.000 0.00 0.00 0.00 2.15
1211 2979 4.040952 GGGAGTACTAGCATGTGGATTCAT 59.959 45.833 0.00 0.00 0.00 2.57
1212 2980 3.388024 GGGAGTACTAGCATGTGGATTCA 59.612 47.826 0.00 0.00 0.00 2.57
1213 2981 3.643792 AGGGAGTACTAGCATGTGGATTC 59.356 47.826 0.00 0.00 0.00 2.52
1214 2982 3.643792 GAGGGAGTACTAGCATGTGGATT 59.356 47.826 0.00 0.00 0.00 3.01
1215 2983 3.235200 GAGGGAGTACTAGCATGTGGAT 58.765 50.000 0.00 0.00 0.00 3.41
1216 2984 2.667470 GAGGGAGTACTAGCATGTGGA 58.333 52.381 0.00 0.00 0.00 4.02
1217 2985 1.689273 GGAGGGAGTACTAGCATGTGG 59.311 57.143 0.00 0.00 0.00 4.17
1218 2986 1.338337 CGGAGGGAGTACTAGCATGTG 59.662 57.143 0.00 0.00 0.00 3.21
1219 2987 1.063867 ACGGAGGGAGTACTAGCATGT 60.064 52.381 0.00 0.00 0.00 3.21
1220 2988 1.693627 ACGGAGGGAGTACTAGCATG 58.306 55.000 0.00 0.00 0.00 4.06
1221 2989 2.308690 GAACGGAGGGAGTACTAGCAT 58.691 52.381 0.00 0.00 0.00 3.79
1222 2990 1.684248 GGAACGGAGGGAGTACTAGCA 60.684 57.143 0.00 0.00 0.00 3.49
1223 2991 1.031235 GGAACGGAGGGAGTACTAGC 58.969 60.000 0.00 0.00 0.00 3.42
1224 2992 2.732844 AGGAACGGAGGGAGTACTAG 57.267 55.000 0.00 0.00 0.00 2.57
1235 3003 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1236 3004 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1250 3018 9.684448 CGCTTATTGATATCTCTAGAAAGACAA 57.316 33.333 3.98 0.00 0.00 3.18
1251 3019 9.067986 TCGCTTATTGATATCTCTAGAAAGACA 57.932 33.333 3.98 0.00 0.00 3.41
1252 3020 9.337091 GTCGCTTATTGATATCTCTAGAAAGAC 57.663 37.037 3.98 2.20 0.00 3.01
1253 3021 9.290988 AGTCGCTTATTGATATCTCTAGAAAGA 57.709 33.333 3.98 0.00 0.00 2.52
1256 3024 9.503399 TGTAGTCGCTTATTGATATCTCTAGAA 57.497 33.333 3.98 0.00 0.00 2.10
1258 3026 8.722394 TGTGTAGTCGCTTATTGATATCTCTAG 58.278 37.037 3.98 0.00 0.00 2.43
1259 3027 8.617290 TGTGTAGTCGCTTATTGATATCTCTA 57.383 34.615 3.98 0.00 0.00 2.43
1260 3028 7.511959 TGTGTAGTCGCTTATTGATATCTCT 57.488 36.000 3.98 0.00 0.00 3.10
1261 3029 8.575565 TTTGTGTAGTCGCTTATTGATATCTC 57.424 34.615 3.98 0.00 0.00 2.75
1262 3030 8.818057 GTTTTGTGTAGTCGCTTATTGATATCT 58.182 33.333 3.98 0.00 0.00 1.98
1263 3031 7.787935 CGTTTTGTGTAGTCGCTTATTGATATC 59.212 37.037 0.00 0.00 0.00 1.63
1264 3032 7.490079 TCGTTTTGTGTAGTCGCTTATTGATAT 59.510 33.333 0.00 0.00 0.00 1.63
1265 3033 6.807720 TCGTTTTGTGTAGTCGCTTATTGATA 59.192 34.615 0.00 0.00 0.00 2.15
1266 3034 5.636121 TCGTTTTGTGTAGTCGCTTATTGAT 59.364 36.000 0.00 0.00 0.00 2.57
1267 3035 4.983538 TCGTTTTGTGTAGTCGCTTATTGA 59.016 37.500 0.00 0.00 0.00 2.57
1268 3036 5.107607 ACTCGTTTTGTGTAGTCGCTTATTG 60.108 40.000 0.00 0.00 0.00 1.90
1269 3037 4.986659 ACTCGTTTTGTGTAGTCGCTTATT 59.013 37.500 0.00 0.00 0.00 1.40
1270 3038 4.384846 CACTCGTTTTGTGTAGTCGCTTAT 59.615 41.667 0.00 0.00 0.00 1.73
1271 3039 3.732219 CACTCGTTTTGTGTAGTCGCTTA 59.268 43.478 0.00 0.00 0.00 3.09
1272 3040 2.538449 CACTCGTTTTGTGTAGTCGCTT 59.462 45.455 0.00 0.00 0.00 4.68
1273 3041 2.124903 CACTCGTTTTGTGTAGTCGCT 58.875 47.619 0.00 0.00 0.00 4.93
1274 3042 2.121786 TCACTCGTTTTGTGTAGTCGC 58.878 47.619 0.00 0.00 36.83 5.19
1275 3043 4.680110 AGATTCACTCGTTTTGTGTAGTCG 59.320 41.667 0.00 0.00 36.83 4.18
1276 3044 6.639686 TGTAGATTCACTCGTTTTGTGTAGTC 59.360 38.462 0.00 0.00 36.83 2.59
1277 3045 6.509656 TGTAGATTCACTCGTTTTGTGTAGT 58.490 36.000 0.00 0.00 36.83 2.73
1278 3046 7.582435 ATGTAGATTCACTCGTTTTGTGTAG 57.418 36.000 0.00 0.00 36.83 2.74
1279 3047 7.870954 AGAATGTAGATTCACTCGTTTTGTGTA 59.129 33.333 14.46 0.00 40.59 2.90
1280 3048 6.706270 AGAATGTAGATTCACTCGTTTTGTGT 59.294 34.615 14.46 0.00 40.59 3.72
1281 3049 7.121974 AGAATGTAGATTCACTCGTTTTGTG 57.878 36.000 14.46 0.00 40.59 3.33
1282 3050 8.827177 TTAGAATGTAGATTCACTCGTTTTGT 57.173 30.769 14.46 0.00 40.59 2.83
1315 3083 9.828039 TGGACTACTACATACGGATGTATATAG 57.172 37.037 24.59 24.59 45.42 1.31
1317 3085 9.696572 AATGGACTACTACATACGGATGTATAT 57.303 33.333 20.64 14.14 45.42 0.86
1318 3086 9.524496 AAATGGACTACTACATACGGATGTATA 57.476 33.333 20.64 13.41 45.42 1.47
1319 3087 8.304596 CAAATGGACTACTACATACGGATGTAT 58.695 37.037 20.64 13.02 45.42 2.29
1320 3088 7.503230 TCAAATGGACTACTACATACGGATGTA 59.497 37.037 19.32 19.32 44.77 2.29
1322 3090 6.745116 TCAAATGGACTACTACATACGGATG 58.255 40.000 5.94 5.94 39.16 3.51
1323 3091 6.971726 TCAAATGGACTACTACATACGGAT 57.028 37.500 0.00 0.00 0.00 4.18
1324 3092 6.778834 TTCAAATGGACTACTACATACGGA 57.221 37.500 0.00 0.00 0.00 4.69
1325 3093 8.433421 AATTTCAAATGGACTACTACATACGG 57.567 34.615 0.00 0.00 0.00 4.02
1326 3094 9.314321 AGAATTTCAAATGGACTACTACATACG 57.686 33.333 0.00 0.00 0.00 3.06
1347 3115 9.244292 GGAGGGAGTATTTGTCTTTTTAGAATT 57.756 33.333 0.00 0.00 0.00 2.17
1348 3116 7.553044 CGGAGGGAGTATTTGTCTTTTTAGAAT 59.447 37.037 0.00 0.00 0.00 2.40
1349 3117 6.877322 CGGAGGGAGTATTTGTCTTTTTAGAA 59.123 38.462 0.00 0.00 0.00 2.10
1350 3118 6.013984 ACGGAGGGAGTATTTGTCTTTTTAGA 60.014 38.462 0.00 0.00 0.00 2.10
1351 3119 6.171213 ACGGAGGGAGTATTTGTCTTTTTAG 58.829 40.000 0.00 0.00 0.00 1.85
1352 3120 6.117975 ACGGAGGGAGTATTTGTCTTTTTA 57.882 37.500 0.00 0.00 0.00 1.52
1353 3121 4.981812 ACGGAGGGAGTATTTGTCTTTTT 58.018 39.130 0.00 0.00 0.00 1.94
1354 3122 4.565028 GGACGGAGGGAGTATTTGTCTTTT 60.565 45.833 0.00 0.00 0.00 2.27
1355 3123 3.055312 GGACGGAGGGAGTATTTGTCTTT 60.055 47.826 0.00 0.00 0.00 2.52
1356 3124 2.500504 GGACGGAGGGAGTATTTGTCTT 59.499 50.000 0.00 0.00 0.00 3.01
1357 3125 2.108970 GGACGGAGGGAGTATTTGTCT 58.891 52.381 0.00 0.00 0.00 3.41
1358 3126 1.138464 GGGACGGAGGGAGTATTTGTC 59.862 57.143 0.00 0.00 0.00 3.18
1359 3127 1.201424 GGGACGGAGGGAGTATTTGT 58.799 55.000 0.00 0.00 0.00 2.83
1360 3128 1.200519 TGGGACGGAGGGAGTATTTG 58.799 55.000 0.00 0.00 0.00 2.32
1361 3129 1.961133 TTGGGACGGAGGGAGTATTT 58.039 50.000 0.00 0.00 0.00 1.40
1362 3130 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
1363 3131 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
1364 3132 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1365 3133 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
1366 3134 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
1367 3135 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
1368 3136 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
1369 3137 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
1370 3138 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
1371 3139 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
1372 3140 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
1373 3141 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
1374 3142 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
1375 3143 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
1376 3144 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1384 3152 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
1385 3153 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
1387 3155 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
1388 3156 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
1413 3181 7.037438 TCCGTCACTAAAATGTAACTGGATAC 58.963 38.462 0.00 0.00 0.00 2.24
1414 3182 7.172868 TCCGTCACTAAAATGTAACTGGATA 57.827 36.000 0.00 0.00 0.00 2.59
1415 3183 6.045072 TCCGTCACTAAAATGTAACTGGAT 57.955 37.500 0.00 0.00 0.00 3.41
1416 3184 5.471556 TCCGTCACTAAAATGTAACTGGA 57.528 39.130 0.00 0.00 0.00 3.86
1417 3185 4.630069 CCTCCGTCACTAAAATGTAACTGG 59.370 45.833 0.00 0.00 0.00 4.00
1418 3186 4.630069 CCCTCCGTCACTAAAATGTAACTG 59.370 45.833 0.00 0.00 0.00 3.16
1419 3187 4.529377 TCCCTCCGTCACTAAAATGTAACT 59.471 41.667 0.00 0.00 0.00 2.24
1420 3188 4.824289 TCCCTCCGTCACTAAAATGTAAC 58.176 43.478 0.00 0.00 0.00 2.50
1421 3189 4.529377 ACTCCCTCCGTCACTAAAATGTAA 59.471 41.667 0.00 0.00 0.00 2.41
1422 3190 4.091549 ACTCCCTCCGTCACTAAAATGTA 58.908 43.478 0.00 0.00 0.00 2.29
1423 3191 2.904434 ACTCCCTCCGTCACTAAAATGT 59.096 45.455 0.00 0.00 0.00 2.71
1424 3192 3.611766 ACTCCCTCCGTCACTAAAATG 57.388 47.619 0.00 0.00 0.00 2.32
1425 3193 5.952347 AATACTCCCTCCGTCACTAAAAT 57.048 39.130 0.00 0.00 0.00 1.82
1426 3194 5.750352 AAATACTCCCTCCGTCACTAAAA 57.250 39.130 0.00 0.00 0.00 1.52
1427 3195 6.189859 TCTAAATACTCCCTCCGTCACTAAA 58.810 40.000 0.00 0.00 0.00 1.85
1428 3196 5.759059 TCTAAATACTCCCTCCGTCACTAA 58.241 41.667 0.00 0.00 0.00 2.24
1429 3197 5.378230 TCTAAATACTCCCTCCGTCACTA 57.622 43.478 0.00 0.00 0.00 2.74
1430 3198 4.246712 TCTAAATACTCCCTCCGTCACT 57.753 45.455 0.00 0.00 0.00 3.41
1431 3199 4.996788 TTCTAAATACTCCCTCCGTCAC 57.003 45.455 0.00 0.00 0.00 3.67
1432 3200 4.142315 CGTTTCTAAATACTCCCTCCGTCA 60.142 45.833 0.00 0.00 0.00 4.35
1433 3201 4.357996 CGTTTCTAAATACTCCCTCCGTC 58.642 47.826 0.00 0.00 0.00 4.79
1434 3202 3.131755 CCGTTTCTAAATACTCCCTCCGT 59.868 47.826 0.00 0.00 0.00 4.69
1435 3203 3.382546 TCCGTTTCTAAATACTCCCTCCG 59.617 47.826 0.00 0.00 0.00 4.63
1436 3204 5.298347 CATCCGTTTCTAAATACTCCCTCC 58.702 45.833 0.00 0.00 0.00 4.30
1437 3205 5.070047 TCCATCCGTTTCTAAATACTCCCTC 59.930 44.000 0.00 0.00 0.00 4.30
1438 3206 4.966805 TCCATCCGTTTCTAAATACTCCCT 59.033 41.667 0.00 0.00 0.00 4.20
1439 3207 5.163332 ACTCCATCCGTTTCTAAATACTCCC 60.163 44.000 0.00 0.00 0.00 4.30
1440 3208 5.915175 ACTCCATCCGTTTCTAAATACTCC 58.085 41.667 0.00 0.00 0.00 3.85
1451 3219 9.357161 GGAGATAGATATATACTCCATCCGTTT 57.643 37.037 15.34 0.00 44.31 3.60
1452 3220 8.927675 GGAGATAGATATATACTCCATCCGTT 57.072 38.462 15.34 0.00 44.31 4.44
1459 3227 9.821240 ATGGACATGGAGATAGATATATACTCC 57.179 37.037 14.19 14.19 44.90 3.85
1465 3233 8.427276 GCATTCATGGACATGGAGATAGATATA 58.573 37.037 11.98 0.00 39.24 0.86
1466 3234 7.092578 TGCATTCATGGACATGGAGATAGATAT 60.093 37.037 11.98 0.00 39.24 1.63
1471 3239 4.392047 GTGCATTCATGGACATGGAGATA 58.608 43.478 11.98 0.00 46.68 1.98
1490 3259 6.402983 GCATGGAGATAAATACTAGCATGTGC 60.403 42.308 0.00 0.00 42.49 4.57
1498 3267 6.950860 TCATGGGCATGGAGATAAATACTA 57.049 37.500 0.00 0.00 39.24 1.82
1500 3269 6.096001 GGATTCATGGGCATGGAGATAAATAC 59.904 42.308 0.00 0.00 39.24 1.89
1501 3270 6.189859 GGATTCATGGGCATGGAGATAAATA 58.810 40.000 0.00 0.00 39.24 1.40
1502 3271 5.021458 GGATTCATGGGCATGGAGATAAAT 58.979 41.667 0.00 0.00 39.24 1.40
1503 3272 4.140971 TGGATTCATGGGCATGGAGATAAA 60.141 41.667 0.00 0.00 39.24 1.40
1504 3273 3.398629 TGGATTCATGGGCATGGAGATAA 59.601 43.478 0.00 0.00 39.24 1.75
1506 3275 1.784593 TGGATTCATGGGCATGGAGAT 59.215 47.619 0.00 0.00 39.24 2.75
1507 3276 1.133699 GTGGATTCATGGGCATGGAGA 60.134 52.381 0.00 0.00 39.24 3.71
1508 3277 1.325355 GTGGATTCATGGGCATGGAG 58.675 55.000 0.00 0.00 39.24 3.86
1509 3278 0.630134 TGTGGATTCATGGGCATGGA 59.370 50.000 0.00 0.00 39.24 3.41
1511 3280 1.826096 TGTTGTGGATTCATGGGCATG 59.174 47.619 0.00 0.00 40.09 4.06
1512 3281 2.234896 TGTTGTGGATTCATGGGCAT 57.765 45.000 0.00 0.00 0.00 4.40
1514 3283 1.472026 GCATGTTGTGGATTCATGGGC 60.472 52.381 0.00 0.00 39.20 5.36
1515 3284 1.137479 GGCATGTTGTGGATTCATGGG 59.863 52.381 0.00 0.00 39.20 4.00
1516 3285 1.826096 TGGCATGTTGTGGATTCATGG 59.174 47.619 0.00 0.00 39.20 3.66
1517 3286 3.812156 ATGGCATGTTGTGGATTCATG 57.188 42.857 0.00 0.00 40.98 3.07
1518 3287 3.770388 TGAATGGCATGTTGTGGATTCAT 59.230 39.130 0.00 0.00 0.00 2.57
1519 3288 3.056678 GTGAATGGCATGTTGTGGATTCA 60.057 43.478 0.00 0.00 0.00 2.57
1520 3289 3.194116 AGTGAATGGCATGTTGTGGATTC 59.806 43.478 0.00 0.00 0.00 2.52
1521 3290 3.056393 CAGTGAATGGCATGTTGTGGATT 60.056 43.478 0.00 0.00 0.00 3.01
1522 3291 2.494471 CAGTGAATGGCATGTTGTGGAT 59.506 45.455 0.00 0.00 0.00 3.41
1523 3292 1.887854 CAGTGAATGGCATGTTGTGGA 59.112 47.619 0.00 0.00 0.00 4.02
1524 3293 1.887854 TCAGTGAATGGCATGTTGTGG 59.112 47.619 0.00 0.00 0.00 4.17
1525 3294 2.555325 AGTCAGTGAATGGCATGTTGTG 59.445 45.455 0.00 0.00 35.29 3.33
1526 3295 2.816087 GAGTCAGTGAATGGCATGTTGT 59.184 45.455 0.00 0.00 35.29 3.32
1527 3296 2.159612 CGAGTCAGTGAATGGCATGTTG 60.160 50.000 0.00 0.00 35.29 3.33
1528 3297 2.079158 CGAGTCAGTGAATGGCATGTT 58.921 47.619 0.00 0.00 35.29 2.71
1529 3298 1.002430 ACGAGTCAGTGAATGGCATGT 59.998 47.619 0.00 0.00 35.29 3.21
1530 3299 1.730501 ACGAGTCAGTGAATGGCATG 58.269 50.000 0.00 0.00 35.29 4.06
1531 3300 2.479566 AACGAGTCAGTGAATGGCAT 57.520 45.000 0.00 0.00 35.29 4.40
1532 3301 2.143122 GAAACGAGTCAGTGAATGGCA 58.857 47.619 0.00 0.00 35.29 4.92
1533 3302 1.464997 GGAAACGAGTCAGTGAATGGC 59.535 52.381 0.00 0.00 0.00 4.40
1534 3303 3.045601 AGGAAACGAGTCAGTGAATGG 57.954 47.619 0.00 0.00 0.00 3.16
1535 3304 5.007626 TGAAAAGGAAACGAGTCAGTGAATG 59.992 40.000 0.00 0.00 0.00 2.67
1536 3305 5.123227 TGAAAAGGAAACGAGTCAGTGAAT 58.877 37.500 0.00 0.00 0.00 2.57
1537 3306 4.509616 TGAAAAGGAAACGAGTCAGTGAA 58.490 39.130 0.00 0.00 0.00 3.18
1538 3307 4.119862 CTGAAAAGGAAACGAGTCAGTGA 58.880 43.478 0.00 0.00 33.88 3.41
1539 3308 3.248602 CCTGAAAAGGAAACGAGTCAGTG 59.751 47.826 0.00 0.00 35.59 3.66
1540 3309 3.118371 ACCTGAAAAGGAAACGAGTCAGT 60.118 43.478 0.00 0.00 35.59 3.41
1541 3310 3.248602 CACCTGAAAAGGAAACGAGTCAG 59.751 47.826 0.00 0.00 36.49 3.51
1542 3311 3.202906 CACCTGAAAAGGAAACGAGTCA 58.797 45.455 0.00 0.00 0.00 3.41
1543 3312 3.203716 ACACCTGAAAAGGAAACGAGTC 58.796 45.455 0.00 0.00 0.00 3.36
1544 3313 3.277142 ACACCTGAAAAGGAAACGAGT 57.723 42.857 0.00 0.00 0.00 4.18
1545 3314 3.625764 TGAACACCTGAAAAGGAAACGAG 59.374 43.478 0.00 0.00 0.00 4.18
1546 3315 3.375922 GTGAACACCTGAAAAGGAAACGA 59.624 43.478 0.00 0.00 0.00 3.85
1547 3316 3.691498 GTGAACACCTGAAAAGGAAACG 58.309 45.455 0.00 0.00 0.00 3.60
1548 3317 3.691498 CGTGAACACCTGAAAAGGAAAC 58.309 45.455 0.00 0.00 0.00 2.78
1572 3341 1.094073 GTCGATGCATCTGCCTTGCT 61.094 55.000 23.73 0.00 40.77 3.91
1577 3346 0.877649 ACGATGTCGATGCATCTGCC 60.878 55.000 23.73 11.79 42.14 4.85
1589 3358 0.734253 AAGCTCTGCACGACGATGTC 60.734 55.000 0.00 0.00 0.00 3.06
1590 3359 0.734253 GAAGCTCTGCACGACGATGT 60.734 55.000 0.00 0.00 0.00 3.06
1591 3360 1.737196 CGAAGCTCTGCACGACGATG 61.737 60.000 0.00 0.00 34.12 3.84
1592 3361 1.515088 CGAAGCTCTGCACGACGAT 60.515 57.895 0.00 0.00 34.12 3.73
1593 3362 2.126850 CGAAGCTCTGCACGACGA 60.127 61.111 0.00 0.00 34.12 4.20
1594 3363 2.874010 ATCCGAAGCTCTGCACGACG 62.874 60.000 0.00 0.00 34.12 5.12
1595 3364 1.142778 GATCCGAAGCTCTGCACGAC 61.143 60.000 0.00 0.00 34.12 4.34
1649 3418 0.955919 CGAAGTGCTGAGGTTTCCCC 60.956 60.000 0.00 0.00 0.00 4.81
1690 3459 1.630244 GATGTTCTTCTGCGCGCACT 61.630 55.000 33.09 9.12 0.00 4.40
1691 3460 1.225854 GATGTTCTTCTGCGCGCAC 60.226 57.895 33.09 20.20 0.00 5.34
1718 3487 3.978193 TGGTTGAAGCCCGGGCAT 61.978 61.111 45.13 36.80 44.88 4.40
1734 3503 1.536922 CGGGAAGACATCGATGGAGTG 60.537 57.143 28.09 5.85 0.00 3.51
1872 3641 3.003763 GGTGGAGGAGACGGGCTT 61.004 66.667 0.00 0.00 0.00 4.35
1916 3685 5.888982 AAGACCATCTATTCACCCGTTAT 57.111 39.130 0.00 0.00 0.00 1.89
1918 3687 5.365605 TCATAAGACCATCTATTCACCCGTT 59.634 40.000 0.00 0.00 0.00 4.44
1919 3688 4.899457 TCATAAGACCATCTATTCACCCGT 59.101 41.667 0.00 0.00 0.00 5.28
1921 3690 7.227156 ACAATCATAAGACCATCTATTCACCC 58.773 38.462 0.00 0.00 0.00 4.61
1959 3786 7.228308 AGACAGATTTTCTTGTCTCAAAGGAAG 59.772 37.037 1.53 0.00 33.04 3.46
1982 3809 5.852827 AGCTCTTATTGCCAGAATAGAGAC 58.147 41.667 0.00 0.00 0.00 3.36
2010 3837 4.035017 CCTTCAAAACTTGCAGTTACACG 58.965 43.478 2.60 0.00 37.47 4.49
2077 3909 7.134815 CGCTGAAAATTATAAGCTGCAACTAT 58.865 34.615 1.02 0.00 33.41 2.12
2175 4007 0.660300 GCCAACAAGCTTACACGCAC 60.660 55.000 0.00 0.00 0.00 5.34
2388 4222 8.531622 TGTGACGGATTAATAAAAACTTCGTA 57.468 30.769 0.00 0.00 0.00 3.43
2473 4307 5.050490 GCGAAGTATGCTTTATCTCTCCAA 58.950 41.667 0.00 0.00 34.61 3.53
2785 4629 1.616159 GTGTTGTTGGGGCAGTATGT 58.384 50.000 0.00 0.00 39.31 2.29
2801 4645 4.036971 GTCGAGATGAGCTAAGTATGGTGT 59.963 45.833 0.00 0.00 0.00 4.16
2817 4661 1.227089 GATGCTGCGGTGTCGAGAT 60.227 57.895 0.00 0.00 39.00 2.75
2948 4843 3.837213 AAATGGTTTCATCACGAGCTG 57.163 42.857 0.00 0.00 32.24 4.24
2972 4867 7.433708 TTTATGAAGATATAACACCGCATGG 57.566 36.000 0.00 0.00 42.84 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.