Multiple sequence alignment - TraesCS5B01G490900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G490900 chr5B 100.000 2414 0 0 1 2414 659634768 659637181 0.000000e+00 4458.0
1 TraesCS5B01G490900 chr5B 85.469 640 56 16 950 1569 659679344 659679966 1.220000e-177 632.0
2 TraesCS5B01G490900 chr5B 79.703 808 111 33 638 1415 659604293 659605077 3.530000e-148 534.0
3 TraesCS5B01G490900 chr5B 83.498 606 65 15 985 1560 659715522 659716122 1.270000e-147 532.0
4 TraesCS5B01G490900 chr5B 90.129 233 16 4 2187 2414 659680559 659680789 1.810000e-76 296.0
5 TraesCS5B01G490900 chr5A 81.719 1012 67 44 625 1571 651754703 651755661 0.000000e+00 736.0
6 TraesCS5B01G490900 chr5A 85.366 492 66 5 950 1439 651685730 651686217 2.770000e-139 505.0
7 TraesCS5B01G490900 chr5A 86.848 441 56 2 1001 1439 651763426 651763866 2.160000e-135 492.0
8 TraesCS5B01G490900 chr5A 82.051 585 76 22 848 1416 651744249 651744820 2.810000e-129 472.0
9 TraesCS5B01G490900 chr5A 90.028 361 36 0 1055 1415 651635600 651635960 3.630000e-128 468.0
10 TraesCS5B01G490900 chr5A 86.223 421 48 6 1000 1415 651588598 651589013 4.730000e-122 448.0
11 TraesCS5B01G490900 chr5A 92.096 291 22 1 1630 1920 651755791 651756080 2.230000e-110 409.0
12 TraesCS5B01G490900 chr5A 77.821 257 46 8 255 507 436907775 436908024 5.380000e-32 148.0
13 TraesCS5B01G490900 chr5A 73.740 377 84 11 253 621 450214623 450214254 1.510000e-27 134.0
14 TraesCS5B01G490900 chr5A 82.734 139 17 7 1433 1569 651763921 651764054 1.520000e-22 117.0
15 TraesCS5B01G490900 chr5D 84.604 656 58 17 950 1569 525317301 525317949 1.590000e-171 612.0
16 TraesCS5B01G490900 chr5D 86.331 417 45 6 1001 1414 525250314 525250721 6.120000e-121 444.0
17 TraesCS5B01G490900 chr5D 88.312 308 23 10 624 919 525316997 525317303 8.210000e-95 357.0
18 TraesCS5B01G490900 chr1B 96.825 252 7 1 2 252 678561323 678561574 1.030000e-113 420.0
19 TraesCS5B01G490900 chr1B 96.094 256 9 1 1 255 76735513 76735768 1.340000e-112 416.0
20 TraesCS5B01G490900 chr3D 96.063 254 8 2 1 252 606923231 606922978 1.730000e-111 412.0
21 TraesCS5B01G490900 chr2D 96.063 254 8 2 1 252 537451716 537451969 1.730000e-111 412.0
22 TraesCS5B01G490900 chr2B 96.047 253 9 1 1 252 11356174 11355922 6.210000e-111 411.0
23 TraesCS5B01G490900 chr6A 94.074 270 11 5 1 267 106681482 106681215 2.890000e-109 405.0
24 TraesCS5B01G490900 chr4B 95.652 253 10 1 1 252 622314796 622314544 2.890000e-109 405.0
25 TraesCS5B01G490900 chr4B 75.093 269 56 7 253 513 26788642 26788377 5.450000e-22 115.0
26 TraesCS5B01G490900 chr2A 95.669 254 8 3 1 252 759091238 759091490 2.890000e-109 405.0
27 TraesCS5B01G490900 chr2A 95.652 253 8 3 2 252 759093648 759093899 1.040000e-108 403.0
28 TraesCS5B01G490900 chr4A 78.700 277 39 12 344 615 633310544 633310283 1.480000e-37 167.0
29 TraesCS5B01G490900 chrUn 75.198 379 77 14 255 621 361607518 361607891 1.920000e-36 163.0
30 TraesCS5B01G490900 chr7B 73.810 294 49 18 334 616 579443937 579443661 9.190000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G490900 chr5B 659634768 659637181 2413 False 4458.0 4458 100.0000 1 2414 1 chr5B.!!$F2 2413
1 TraesCS5B01G490900 chr5B 659604293 659605077 784 False 534.0 534 79.7030 638 1415 1 chr5B.!!$F1 777
2 TraesCS5B01G490900 chr5B 659715522 659716122 600 False 532.0 532 83.4980 985 1560 1 chr5B.!!$F3 575
3 TraesCS5B01G490900 chr5B 659679344 659680789 1445 False 464.0 632 87.7990 950 2414 2 chr5B.!!$F4 1464
4 TraesCS5B01G490900 chr5A 651754703 651756080 1377 False 572.5 736 86.9075 625 1920 2 chr5A.!!$F6 1295
5 TraesCS5B01G490900 chr5A 651744249 651744820 571 False 472.0 472 82.0510 848 1416 1 chr5A.!!$F5 568
6 TraesCS5B01G490900 chr5A 651763426 651764054 628 False 304.5 492 84.7910 1001 1569 2 chr5A.!!$F7 568
7 TraesCS5B01G490900 chr5D 525316997 525317949 952 False 484.5 612 86.4580 624 1569 2 chr5D.!!$F2 945
8 TraesCS5B01G490900 chr2A 759091238 759093899 2661 False 404.0 405 95.6605 1 252 2 chr2A.!!$F1 251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1162 0.031616 GTCTCCCTCTCCCACTCCAT 60.032 60.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 3508 0.107831 ACCAAAACGTGCAGCTCCTA 59.892 50.0 0.0 0.0 0.0 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.340600 CCCCACGTTGTAACCCATGAT 60.341 52.381 0.00 0.00 0.00 2.45
126 128 1.528776 GTATCTCGGGGAGGAGCGT 60.529 63.158 0.00 0.00 33.98 5.07
181 183 2.159612 GCCGAACCTCGTTAACAAATCC 60.160 50.000 6.39 0.00 38.40 3.01
195 197 1.130373 CAAATCCCGGTGTCGTCATTG 59.870 52.381 0.00 0.00 33.95 2.82
199 201 1.014044 CCCGGTGTCGTCATTGTCTG 61.014 60.000 0.00 0.00 33.95 3.51
217 219 1.466167 CTGTGATTGCTTGTTCCTCGG 59.534 52.381 0.00 0.00 0.00 4.63
218 220 1.071542 TGTGATTGCTTGTTCCTCGGA 59.928 47.619 0.00 0.00 0.00 4.55
219 221 2.290260 TGTGATTGCTTGTTCCTCGGAT 60.290 45.455 0.00 0.00 0.00 4.18
236 238 0.385723 GATGATCGACCGCGTACCTC 60.386 60.000 4.92 0.00 38.98 3.85
252 254 5.401674 GCGTACCTCGGATTTATTCTAACAG 59.598 44.000 0.00 0.00 40.26 3.16
253 255 6.732154 CGTACCTCGGATTTATTCTAACAGA 58.268 40.000 0.00 0.00 35.71 3.41
254 256 7.198390 CGTACCTCGGATTTATTCTAACAGAA 58.802 38.462 0.00 0.00 35.81 3.02
257 259 5.467063 CCTCGGATTTATTCTAACAGAAGGC 59.533 44.000 0.00 0.00 37.69 4.35
258 260 6.235231 TCGGATTTATTCTAACAGAAGGCT 57.765 37.500 0.00 0.00 37.69 4.58
259 261 7.356089 TCGGATTTATTCTAACAGAAGGCTA 57.644 36.000 0.00 0.00 37.69 3.93
260 262 7.788026 TCGGATTTATTCTAACAGAAGGCTAA 58.212 34.615 0.00 0.00 37.69 3.09
261 263 7.709613 TCGGATTTATTCTAACAGAAGGCTAAC 59.290 37.037 0.00 0.00 37.69 2.34
262 264 7.041984 CGGATTTATTCTAACAGAAGGCTAACC 60.042 40.741 0.00 0.00 37.69 2.85
263 265 7.041984 GGATTTATTCTAACAGAAGGCTAACCG 60.042 40.741 0.00 0.00 37.69 4.44
265 267 1.829222 TCTAACAGAAGGCTAACCGGG 59.171 52.381 6.32 0.00 42.76 5.73
267 269 0.613777 AACAGAAGGCTAACCGGGAG 59.386 55.000 6.32 3.38 42.76 4.30
268 270 0.544595 ACAGAAGGCTAACCGGGAGT 60.545 55.000 6.32 0.00 42.76 3.85
269 271 0.613777 CAGAAGGCTAACCGGGAGTT 59.386 55.000 6.32 0.00 42.76 3.01
271 273 1.278413 AGAAGGCTAACCGGGAGTTTC 59.722 52.381 6.32 10.85 42.76 2.78
272 274 1.278413 GAAGGCTAACCGGGAGTTTCT 59.722 52.381 6.32 0.00 42.76 2.52
293 295 3.766691 TAAGGAGCGGGCGGTGTC 61.767 66.667 0.00 0.00 0.00 3.67
297 299 4.778143 GAGCGGGCGGTGTCCAAT 62.778 66.667 0.00 0.00 0.00 3.16
303 305 4.166011 GCGGTGTCCAATGCGCTC 62.166 66.667 9.73 0.00 0.00 5.03
304 306 2.434884 CGGTGTCCAATGCGCTCT 60.435 61.111 9.73 0.00 0.00 4.09
308 356 0.730494 GTGTCCAATGCGCTCTTTGC 60.730 55.000 9.73 0.00 38.57 3.68
309 357 0.890542 TGTCCAATGCGCTCTTTGCT 60.891 50.000 9.73 0.00 40.11 3.91
312 360 2.095263 GTCCAATGCGCTCTTTGCTAAA 60.095 45.455 9.73 0.00 40.11 1.85
314 362 2.095059 CCAATGCGCTCTTTGCTAAACT 60.095 45.455 9.73 0.00 40.11 2.66
316 364 2.686558 TGCGCTCTTTGCTAAACTTG 57.313 45.000 9.73 0.00 40.11 3.16
321 369 2.032030 GCTCTTTGCTAAACTTGACGCA 60.032 45.455 0.00 0.00 38.95 5.24
325 373 2.812358 TGCTAAACTTGACGCAGAGA 57.188 45.000 0.00 0.00 0.00 3.10
326 374 3.319137 TGCTAAACTTGACGCAGAGAT 57.681 42.857 0.00 0.00 0.00 2.75
329 377 4.157840 TGCTAAACTTGACGCAGAGATAGA 59.842 41.667 0.00 0.00 0.00 1.98
330 378 4.737765 GCTAAACTTGACGCAGAGATAGAG 59.262 45.833 0.00 0.00 0.00 2.43
332 380 3.006112 ACTTGACGCAGAGATAGAGGA 57.994 47.619 0.00 0.00 0.00 3.71
335 383 3.283259 TGACGCAGAGATAGAGGAAGA 57.717 47.619 0.00 0.00 0.00 2.87
337 385 1.953686 ACGCAGAGATAGAGGAAGAGC 59.046 52.381 0.00 0.00 0.00 4.09
339 387 1.618343 GCAGAGATAGAGGAAGAGCCC 59.382 57.143 0.00 0.00 37.37 5.19
340 388 1.885887 CAGAGATAGAGGAAGAGCCCG 59.114 57.143 0.00 0.00 37.37 6.13
343 391 1.152226 ATAGAGGAAGAGCCCGGGG 60.152 63.158 25.28 9.31 37.37 5.73
362 410 4.173924 GGAGCAGCAGGAGGAGCC 62.174 72.222 0.00 0.00 0.00 4.70
363 411 4.527583 GAGCAGCAGGAGGAGCCG 62.528 72.222 0.00 0.00 43.43 5.52
366 414 3.847602 CAGCAGGAGGAGCCGGAG 61.848 72.222 5.05 0.00 43.43 4.63
384 432 3.506096 CTGCAGCTGCCGTCCATG 61.506 66.667 34.64 12.50 41.18 3.66
385 433 4.334118 TGCAGCTGCCGTCCATGT 62.334 61.111 34.64 0.00 41.18 3.21
386 434 2.125147 GCAGCTGCCGTCCATGTA 60.125 61.111 28.76 0.00 34.31 2.29
387 435 2.464459 GCAGCTGCCGTCCATGTAC 61.464 63.158 28.76 0.00 34.31 2.90
388 436 1.815421 CAGCTGCCGTCCATGTACC 60.815 63.158 0.00 0.00 0.00 3.34
389 437 2.513897 GCTGCCGTCCATGTACCC 60.514 66.667 0.00 0.00 0.00 3.69
390 438 2.202878 CTGCCGTCCATGTACCCG 60.203 66.667 0.00 0.00 0.00 5.28
392 440 3.463585 GCCGTCCATGTACCCGGA 61.464 66.667 0.73 3.26 43.01 5.14
395 443 2.423898 CGTCCATGTACCCGGAGCT 61.424 63.158 0.73 0.00 29.98 4.09
396 444 1.144057 GTCCATGTACCCGGAGCTG 59.856 63.158 0.73 0.00 29.98 4.24
405 453 3.882326 CCGGAGCTGGGCATGGAT 61.882 66.667 0.00 0.00 0.00 3.41
406 454 2.519622 CCGGAGCTGGGCATGGATA 61.520 63.158 0.00 0.00 0.00 2.59
407 455 1.681666 CGGAGCTGGGCATGGATAT 59.318 57.895 0.00 0.00 0.00 1.63
408 456 0.904649 CGGAGCTGGGCATGGATATA 59.095 55.000 0.00 0.00 0.00 0.86
409 457 1.134580 CGGAGCTGGGCATGGATATAG 60.135 57.143 0.00 0.00 0.00 1.31
410 458 1.912043 GGAGCTGGGCATGGATATAGT 59.088 52.381 0.00 0.00 0.00 2.12
411 459 2.093235 GGAGCTGGGCATGGATATAGTC 60.093 54.545 0.00 0.00 0.00 2.59
412 460 1.552337 AGCTGGGCATGGATATAGTCG 59.448 52.381 0.00 0.00 0.00 4.18
413 461 1.550524 GCTGGGCATGGATATAGTCGA 59.449 52.381 0.00 0.00 0.00 4.20
414 462 2.675317 GCTGGGCATGGATATAGTCGAC 60.675 54.545 7.70 7.70 0.00 4.20
415 463 1.544246 TGGGCATGGATATAGTCGACG 59.456 52.381 10.46 0.00 0.00 5.12
416 464 1.544691 GGGCATGGATATAGTCGACGT 59.455 52.381 10.46 5.81 0.00 4.34
417 465 2.029290 GGGCATGGATATAGTCGACGTT 60.029 50.000 10.46 4.15 0.00 3.99
418 466 3.554337 GGGCATGGATATAGTCGACGTTT 60.554 47.826 10.46 1.45 0.00 3.60
419 467 3.428870 GGCATGGATATAGTCGACGTTTG 59.571 47.826 10.46 2.39 0.00 2.93
420 468 4.049186 GCATGGATATAGTCGACGTTTGT 58.951 43.478 10.46 0.00 0.00 2.83
421 469 4.085055 GCATGGATATAGTCGACGTTTGTG 60.085 45.833 10.46 4.61 0.00 3.33
422 470 4.968812 TGGATATAGTCGACGTTTGTGA 57.031 40.909 10.46 0.00 0.00 3.58
423 471 4.665212 TGGATATAGTCGACGTTTGTGAC 58.335 43.478 10.46 0.00 0.00 3.67
437 485 4.167268 GTTTGTGACGAGAAGTAGCTAGG 58.833 47.826 0.00 0.00 0.00 3.02
438 486 3.069079 TGTGACGAGAAGTAGCTAGGT 57.931 47.619 0.00 0.00 0.00 3.08
439 487 4.212143 TGTGACGAGAAGTAGCTAGGTA 57.788 45.455 0.00 0.00 0.00 3.08
440 488 4.582869 TGTGACGAGAAGTAGCTAGGTAA 58.417 43.478 2.58 0.00 0.00 2.85
441 489 5.191426 TGTGACGAGAAGTAGCTAGGTAAT 58.809 41.667 2.58 0.00 0.00 1.89
442 490 5.296283 TGTGACGAGAAGTAGCTAGGTAATC 59.704 44.000 2.58 5.65 0.00 1.75
443 491 5.528320 GTGACGAGAAGTAGCTAGGTAATCT 59.472 44.000 14.93 14.93 0.00 2.40
444 492 6.705381 GTGACGAGAAGTAGCTAGGTAATCTA 59.295 42.308 14.97 2.09 0.00 1.98
445 493 6.705381 TGACGAGAAGTAGCTAGGTAATCTAC 59.295 42.308 14.97 7.24 34.45 2.59
446 494 5.695816 ACGAGAAGTAGCTAGGTAATCTACG 59.304 44.000 14.97 18.33 38.11 3.51
447 495 5.695816 CGAGAAGTAGCTAGGTAATCTACGT 59.304 44.000 14.97 0.00 38.11 3.57
448 496 6.128849 CGAGAAGTAGCTAGGTAATCTACGTC 60.129 46.154 14.97 12.57 40.00 4.34
449 497 5.695816 AGAAGTAGCTAGGTAATCTACGTCG 59.304 44.000 13.90 0.00 42.47 5.12
450 498 4.954875 AGTAGCTAGGTAATCTACGTCGT 58.045 43.478 2.58 2.21 38.11 4.34
451 499 6.090483 AGTAGCTAGGTAATCTACGTCGTA 57.910 41.667 2.58 4.78 38.11 3.43
452 500 6.516718 AGTAGCTAGGTAATCTACGTCGTAA 58.483 40.000 6.55 0.00 38.11 3.18
453 501 5.921004 AGCTAGGTAATCTACGTCGTAAG 57.079 43.478 6.55 0.00 0.00 2.34
454 502 5.363939 AGCTAGGTAATCTACGTCGTAAGT 58.636 41.667 6.55 0.45 39.48 2.24
455 503 6.516718 AGCTAGGTAATCTACGTCGTAAGTA 58.483 40.000 6.55 0.00 39.48 2.24
456 504 6.644592 AGCTAGGTAATCTACGTCGTAAGTAG 59.355 42.308 6.55 0.00 42.03 2.57
457 505 6.128688 GCTAGGTAATCTACGTCGTAAGTAGG 60.129 46.154 6.55 0.00 41.26 3.18
458 506 5.675538 AGGTAATCTACGTCGTAAGTAGGT 58.324 41.667 6.55 5.24 41.26 3.08
459 507 6.116126 AGGTAATCTACGTCGTAAGTAGGTT 58.884 40.000 6.55 14.07 44.74 3.50
460 508 6.599638 AGGTAATCTACGTCGTAAGTAGGTTT 59.400 38.462 6.55 10.84 41.26 3.27
461 509 7.121315 AGGTAATCTACGTCGTAAGTAGGTTTT 59.879 37.037 6.55 9.25 41.26 2.43
462 510 7.755373 GGTAATCTACGTCGTAAGTAGGTTTTT 59.245 37.037 6.55 7.68 41.26 1.94
463 511 7.572502 AATCTACGTCGTAAGTAGGTTTTTG 57.427 36.000 6.55 0.00 41.26 2.44
464 512 5.460646 TCTACGTCGTAAGTAGGTTTTTGG 58.539 41.667 6.55 0.00 41.26 3.28
465 513 4.058721 ACGTCGTAAGTAGGTTTTTGGT 57.941 40.909 0.00 0.00 39.48 3.67
466 514 4.441792 ACGTCGTAAGTAGGTTTTTGGTT 58.558 39.130 0.00 0.00 39.48 3.67
467 515 4.875536 ACGTCGTAAGTAGGTTTTTGGTTT 59.124 37.500 0.00 0.00 39.48 3.27
468 516 5.199726 CGTCGTAAGTAGGTTTTTGGTTTG 58.800 41.667 0.00 0.00 39.48 2.93
469 517 4.971830 GTCGTAAGTAGGTTTTTGGTTTGC 59.028 41.667 0.00 0.00 39.48 3.68
470 518 4.639310 TCGTAAGTAGGTTTTTGGTTTGCA 59.361 37.500 0.00 0.00 39.48 4.08
471 519 5.299782 TCGTAAGTAGGTTTTTGGTTTGCAT 59.700 36.000 0.00 0.00 39.48 3.96
472 520 5.401079 CGTAAGTAGGTTTTTGGTTTGCATG 59.599 40.000 0.00 0.00 0.00 4.06
473 521 3.727726 AGTAGGTTTTTGGTTTGCATGC 58.272 40.909 11.82 11.82 0.00 4.06
474 522 3.387699 AGTAGGTTTTTGGTTTGCATGCT 59.612 39.130 20.33 0.00 0.00 3.79
475 523 3.280197 AGGTTTTTGGTTTGCATGCTT 57.720 38.095 20.33 0.00 0.00 3.91
476 524 3.205338 AGGTTTTTGGTTTGCATGCTTC 58.795 40.909 20.33 8.87 0.00 3.86
477 525 3.118298 AGGTTTTTGGTTTGCATGCTTCT 60.118 39.130 20.33 0.00 0.00 2.85
478 526 3.002553 GGTTTTTGGTTTGCATGCTTCTG 59.997 43.478 20.33 0.00 0.00 3.02
479 527 3.540314 TTTTGGTTTGCATGCTTCTGT 57.460 38.095 20.33 0.00 0.00 3.41
480 528 4.662468 TTTTGGTTTGCATGCTTCTGTA 57.338 36.364 20.33 0.00 0.00 2.74
481 529 4.870123 TTTGGTTTGCATGCTTCTGTAT 57.130 36.364 20.33 0.00 0.00 2.29
482 530 3.853831 TGGTTTGCATGCTTCTGTATG 57.146 42.857 20.33 0.00 38.94 2.39
483 531 2.492881 TGGTTTGCATGCTTCTGTATGG 59.507 45.455 20.33 0.00 36.89 2.74
484 532 2.754552 GGTTTGCATGCTTCTGTATGGA 59.245 45.455 20.33 0.00 36.89 3.41
485 533 3.193267 GGTTTGCATGCTTCTGTATGGAA 59.807 43.478 20.33 0.00 42.52 3.53
486 534 4.142093 GGTTTGCATGCTTCTGTATGGAAT 60.142 41.667 20.33 0.00 43.30 3.01
487 535 5.413499 GTTTGCATGCTTCTGTATGGAATT 58.587 37.500 20.33 0.00 43.30 2.17
488 536 6.405731 GGTTTGCATGCTTCTGTATGGAATTA 60.406 38.462 20.33 0.00 43.30 1.40
489 537 6.772360 TTGCATGCTTCTGTATGGAATTAA 57.228 33.333 20.33 0.00 40.35 1.40
490 538 6.381481 TGCATGCTTCTGTATGGAATTAAG 57.619 37.500 20.33 0.00 34.24 1.85
491 539 6.121590 TGCATGCTTCTGTATGGAATTAAGA 58.878 36.000 20.33 0.00 34.24 2.10
492 540 6.774170 TGCATGCTTCTGTATGGAATTAAGAT 59.226 34.615 20.33 0.00 34.24 2.40
493 541 7.286087 TGCATGCTTCTGTATGGAATTAAGATT 59.714 33.333 20.33 0.00 34.24 2.40
494 542 8.139989 GCATGCTTCTGTATGGAATTAAGATTT 58.860 33.333 11.37 0.00 36.89 2.17
497 545 9.905713 TGCTTCTGTATGGAATTAAGATTTAGT 57.094 29.630 0.00 0.00 0.00 2.24
513 561 8.888579 AAGATTTAGTATAAGGTGTTCGGATG 57.111 34.615 0.00 0.00 0.00 3.51
514 562 8.019656 AGATTTAGTATAAGGTGTTCGGATGT 57.980 34.615 0.00 0.00 0.00 3.06
515 563 9.139734 AGATTTAGTATAAGGTGTTCGGATGTA 57.860 33.333 0.00 0.00 0.00 2.29
516 564 9.408069 GATTTAGTATAAGGTGTTCGGATGTAG 57.592 37.037 0.00 0.00 0.00 2.74
517 565 7.886629 TTAGTATAAGGTGTTCGGATGTAGT 57.113 36.000 0.00 0.00 0.00 2.73
518 566 6.786967 AGTATAAGGTGTTCGGATGTAGTT 57.213 37.500 0.00 0.00 0.00 2.24
519 567 6.570692 AGTATAAGGTGTTCGGATGTAGTTG 58.429 40.000 0.00 0.00 0.00 3.16
520 568 3.764237 AAGGTGTTCGGATGTAGTTGT 57.236 42.857 0.00 0.00 0.00 3.32
521 569 3.040147 AGGTGTTCGGATGTAGTTGTG 57.960 47.619 0.00 0.00 0.00 3.33
522 570 2.073816 GGTGTTCGGATGTAGTTGTGG 58.926 52.381 0.00 0.00 0.00 4.17
523 571 2.549349 GGTGTTCGGATGTAGTTGTGGT 60.549 50.000 0.00 0.00 0.00 4.16
524 572 3.306225 GGTGTTCGGATGTAGTTGTGGTA 60.306 47.826 0.00 0.00 0.00 3.25
525 573 4.309099 GTGTTCGGATGTAGTTGTGGTAA 58.691 43.478 0.00 0.00 0.00 2.85
526 574 4.933400 GTGTTCGGATGTAGTTGTGGTAAT 59.067 41.667 0.00 0.00 0.00 1.89
527 575 5.410439 GTGTTCGGATGTAGTTGTGGTAATT 59.590 40.000 0.00 0.00 0.00 1.40
528 576 5.998981 TGTTCGGATGTAGTTGTGGTAATTT 59.001 36.000 0.00 0.00 0.00 1.82
529 577 7.118101 GTGTTCGGATGTAGTTGTGGTAATTTA 59.882 37.037 0.00 0.00 0.00 1.40
530 578 7.660617 TGTTCGGATGTAGTTGTGGTAATTTAA 59.339 33.333 0.00 0.00 0.00 1.52
531 579 7.837202 TCGGATGTAGTTGTGGTAATTTAAG 57.163 36.000 0.00 0.00 0.00 1.85
532 580 7.613585 TCGGATGTAGTTGTGGTAATTTAAGA 58.386 34.615 0.00 0.00 0.00 2.10
533 581 8.095792 TCGGATGTAGTTGTGGTAATTTAAGAA 58.904 33.333 0.00 0.00 0.00 2.52
534 582 8.388103 CGGATGTAGTTGTGGTAATTTAAGAAG 58.612 37.037 0.00 0.00 0.00 2.85
535 583 9.227777 GGATGTAGTTGTGGTAATTTAAGAAGT 57.772 33.333 0.00 0.00 0.00 3.01
537 585 8.967664 TGTAGTTGTGGTAATTTAAGAAGTGT 57.032 30.769 0.00 0.00 0.00 3.55
538 586 9.048446 TGTAGTTGTGGTAATTTAAGAAGTGTC 57.952 33.333 0.00 0.00 0.00 3.67
539 587 9.269453 GTAGTTGTGGTAATTTAAGAAGTGTCT 57.731 33.333 0.00 0.00 34.72 3.41
540 588 8.154649 AGTTGTGGTAATTTAAGAAGTGTCTG 57.845 34.615 0.00 0.00 33.05 3.51
541 589 7.990886 AGTTGTGGTAATTTAAGAAGTGTCTGA 59.009 33.333 0.00 0.00 33.05 3.27
542 590 8.784043 GTTGTGGTAATTTAAGAAGTGTCTGAT 58.216 33.333 0.00 0.00 33.05 2.90
543 591 8.547967 TGTGGTAATTTAAGAAGTGTCTGATC 57.452 34.615 0.00 0.00 33.05 2.92
544 592 8.154203 TGTGGTAATTTAAGAAGTGTCTGATCA 58.846 33.333 0.00 0.00 33.05 2.92
545 593 9.167311 GTGGTAATTTAAGAAGTGTCTGATCAT 57.833 33.333 0.00 0.00 33.05 2.45
546 594 9.739276 TGGTAATTTAAGAAGTGTCTGATCATT 57.261 29.630 0.00 0.00 33.05 2.57
547 595 9.994432 GGTAATTTAAGAAGTGTCTGATCATTG 57.006 33.333 0.00 0.00 33.05 2.82
548 596 9.495754 GTAATTTAAGAAGTGTCTGATCATTGC 57.504 33.333 0.00 0.00 33.05 3.56
549 597 6.500684 TTTAAGAAGTGTCTGATCATTGCC 57.499 37.500 0.00 0.00 33.05 4.52
550 598 3.708403 AGAAGTGTCTGATCATTGCCA 57.292 42.857 0.00 0.00 30.83 4.92
551 599 3.341823 AGAAGTGTCTGATCATTGCCAC 58.658 45.455 0.00 1.11 30.83 5.01
552 600 1.730501 AGTGTCTGATCATTGCCACG 58.269 50.000 0.00 0.00 0.00 4.94
553 601 0.729116 GTGTCTGATCATTGCCACGG 59.271 55.000 0.00 0.00 0.00 4.94
554 602 0.612744 TGTCTGATCATTGCCACGGA 59.387 50.000 0.00 0.00 0.00 4.69
555 603 1.009829 GTCTGATCATTGCCACGGAC 58.990 55.000 0.00 0.00 0.00 4.79
556 604 0.460109 TCTGATCATTGCCACGGACG 60.460 55.000 0.00 0.00 0.00 4.79
557 605 0.740868 CTGATCATTGCCACGGACGT 60.741 55.000 0.00 0.00 0.00 4.34
558 606 1.018752 TGATCATTGCCACGGACGTG 61.019 55.000 17.21 17.21 45.02 4.49
559 607 1.003839 ATCATTGCCACGGACGTGT 60.004 52.632 21.52 2.22 44.02 4.49
560 608 1.019278 ATCATTGCCACGGACGTGTC 61.019 55.000 21.52 11.31 44.02 3.67
561 609 2.358247 ATTGCCACGGACGTGTCC 60.358 61.111 21.52 9.04 44.02 4.02
573 621 2.612200 CGTGTCCAAACATGTCCGT 58.388 52.632 0.00 0.00 37.81 4.69
574 622 1.785768 CGTGTCCAAACATGTCCGTA 58.214 50.000 0.00 0.00 37.81 4.02
575 623 2.136728 CGTGTCCAAACATGTCCGTAA 58.863 47.619 0.00 0.00 37.81 3.18
576 624 2.544686 CGTGTCCAAACATGTCCGTAAA 59.455 45.455 0.00 0.00 37.81 2.01
577 625 3.605231 CGTGTCCAAACATGTCCGTAAAC 60.605 47.826 0.00 0.00 37.81 2.01
578 626 2.544686 TGTCCAAACATGTCCGTAAACG 59.455 45.455 0.00 0.00 39.44 3.60
579 627 2.545106 GTCCAAACATGTCCGTAAACGT 59.455 45.455 0.00 0.00 37.74 3.99
580 628 3.002553 GTCCAAACATGTCCGTAAACGTT 59.997 43.478 0.00 0.00 37.74 3.99
581 629 3.626670 TCCAAACATGTCCGTAAACGTTT 59.373 39.130 18.90 18.90 37.74 3.60
582 630 4.096081 TCCAAACATGTCCGTAAACGTTTT 59.904 37.500 20.19 3.53 37.74 2.43
583 631 5.295292 TCCAAACATGTCCGTAAACGTTTTA 59.705 36.000 20.19 2.51 37.74 1.52
584 632 5.622041 CCAAACATGTCCGTAAACGTTTTAG 59.378 40.000 20.19 13.02 37.74 1.85
585 633 4.996062 ACATGTCCGTAAACGTTTTAGG 57.004 40.909 20.19 20.93 37.74 2.69
586 634 3.747529 ACATGTCCGTAAACGTTTTAGGG 59.252 43.478 20.19 16.93 37.74 3.53
587 635 2.765122 TGTCCGTAAACGTTTTAGGGG 58.235 47.619 20.19 14.56 37.74 4.79
588 636 2.103941 TGTCCGTAAACGTTTTAGGGGT 59.896 45.455 20.19 0.00 37.74 4.95
589 637 2.736721 GTCCGTAAACGTTTTAGGGGTC 59.263 50.000 20.19 9.30 37.74 4.46
590 638 2.366916 TCCGTAAACGTTTTAGGGGTCA 59.633 45.455 20.19 4.43 37.74 4.02
591 639 3.007831 TCCGTAAACGTTTTAGGGGTCAT 59.992 43.478 20.19 0.00 37.74 3.06
592 640 4.221703 TCCGTAAACGTTTTAGGGGTCATA 59.778 41.667 20.19 3.42 37.74 2.15
593 641 5.104982 TCCGTAAACGTTTTAGGGGTCATAT 60.105 40.000 20.19 0.00 37.74 1.78
594 642 5.585844 CCGTAAACGTTTTAGGGGTCATATT 59.414 40.000 20.19 0.00 37.74 1.28
595 643 6.093909 CCGTAAACGTTTTAGGGGTCATATTT 59.906 38.462 20.19 0.00 37.74 1.40
596 644 7.279758 CCGTAAACGTTTTAGGGGTCATATTTA 59.720 37.037 20.19 0.00 37.74 1.40
597 645 8.829612 CGTAAACGTTTTAGGGGTCATATTTAT 58.170 33.333 20.19 0.00 34.11 1.40
599 647 8.810990 AAACGTTTTAGGGGTCATATTTATCA 57.189 30.769 7.96 0.00 0.00 2.15
600 648 8.990163 AACGTTTTAGGGGTCATATTTATCAT 57.010 30.769 0.00 0.00 0.00 2.45
606 654 9.973661 TTTAGGGGTCATATTTATCATATGTGG 57.026 33.333 1.90 0.00 34.51 4.17
607 655 7.588866 AGGGGTCATATTTATCATATGTGGT 57.411 36.000 1.90 0.00 34.51 4.16
608 656 8.000171 AGGGGTCATATTTATCATATGTGGTT 58.000 34.615 1.90 0.00 34.51 3.67
609 657 7.890127 AGGGGTCATATTTATCATATGTGGTTG 59.110 37.037 1.90 0.00 34.51 3.77
610 658 7.669722 GGGGTCATATTTATCATATGTGGTTGT 59.330 37.037 1.90 0.00 34.51 3.32
611 659 9.733556 GGGTCATATTTATCATATGTGGTTGTA 57.266 33.333 1.90 0.00 34.51 2.41
618 666 8.902540 TTTATCATATGTGGTTGTAGATGGTC 57.097 34.615 1.90 0.00 0.00 4.02
619 667 6.753913 ATCATATGTGGTTGTAGATGGTCT 57.246 37.500 1.90 0.00 0.00 3.85
620 668 6.560003 TCATATGTGGTTGTAGATGGTCTT 57.440 37.500 1.90 0.00 0.00 3.01
621 669 6.348498 TCATATGTGGTTGTAGATGGTCTTG 58.652 40.000 1.90 0.00 0.00 3.02
622 670 4.640771 ATGTGGTTGTAGATGGTCTTGT 57.359 40.909 0.00 0.00 0.00 3.16
680 729 3.941483 GGAGCAAGCTAAGCAATTACTCA 59.059 43.478 12.91 0.00 0.00 3.41
683 732 4.101235 GCAAGCTAAGCAATTACTCAAGC 58.899 43.478 6.22 5.28 0.00 4.01
684 733 4.142513 GCAAGCTAAGCAATTACTCAAGCT 60.143 41.667 8.88 8.88 39.38 3.74
685 734 5.330295 CAAGCTAAGCAATTACTCAAGCTG 58.670 41.667 13.52 6.96 38.34 4.24
689 743 3.045601 AGCAATTACTCAAGCTGACGT 57.954 42.857 0.00 0.00 35.72 4.34
728 783 1.195115 ATCTTTCCAGACCTGCGCTA 58.805 50.000 9.73 0.00 0.00 4.26
829 1043 2.885894 GGTAGCTACTAGTACCAGCCAG 59.114 54.545 22.74 0.00 38.91 4.85
914 1131 0.457681 GAGCTCTTCCGAGTGACTGC 60.458 60.000 6.43 0.00 39.53 4.40
916 1133 0.108424 GCTCTTCCGAGTGACTGCAT 60.108 55.000 0.00 0.00 39.53 3.96
917 1134 1.919918 CTCTTCCGAGTGACTGCATC 58.080 55.000 0.00 0.00 32.47 3.91
918 1135 0.532573 TCTTCCGAGTGACTGCATCC 59.467 55.000 0.00 0.00 0.00 3.51
919 1136 0.247460 CTTCCGAGTGACTGCATCCA 59.753 55.000 0.00 0.00 0.00 3.41
920 1137 0.904649 TTCCGAGTGACTGCATCCAT 59.095 50.000 0.00 0.00 0.00 3.41
921 1138 0.461548 TCCGAGTGACTGCATCCATC 59.538 55.000 0.00 0.00 0.00 3.51
922 1139 0.463204 CCGAGTGACTGCATCCATCT 59.537 55.000 0.00 0.00 0.00 2.90
923 1140 1.537776 CCGAGTGACTGCATCCATCTC 60.538 57.143 0.00 0.00 0.00 2.75
924 1141 1.408340 CGAGTGACTGCATCCATCTCT 59.592 52.381 0.00 0.00 0.00 3.10
925 1142 2.543445 CGAGTGACTGCATCCATCTCTC 60.543 54.545 0.00 0.00 32.28 3.20
926 1143 1.408340 AGTGACTGCATCCATCTCTCG 59.592 52.381 0.00 0.00 0.00 4.04
927 1144 1.135915 GTGACTGCATCCATCTCTCGT 59.864 52.381 0.00 0.00 0.00 4.18
928 1145 1.406898 TGACTGCATCCATCTCTCGTC 59.593 52.381 0.00 0.00 0.00 4.20
929 1146 1.680735 GACTGCATCCATCTCTCGTCT 59.319 52.381 0.00 0.00 0.00 4.18
930 1147 1.680735 ACTGCATCCATCTCTCGTCTC 59.319 52.381 0.00 0.00 0.00 3.36
931 1148 1.000385 CTGCATCCATCTCTCGTCTCC 60.000 57.143 0.00 0.00 0.00 3.71
932 1149 0.316841 GCATCCATCTCTCGTCTCCC 59.683 60.000 0.00 0.00 0.00 4.30
933 1150 1.993956 CATCCATCTCTCGTCTCCCT 58.006 55.000 0.00 0.00 0.00 4.20
934 1151 1.885887 CATCCATCTCTCGTCTCCCTC 59.114 57.143 0.00 0.00 0.00 4.30
935 1152 1.217916 TCCATCTCTCGTCTCCCTCT 58.782 55.000 0.00 0.00 0.00 3.69
936 1153 1.142060 TCCATCTCTCGTCTCCCTCTC 59.858 57.143 0.00 0.00 0.00 3.20
937 1154 1.604604 CATCTCTCGTCTCCCTCTCC 58.395 60.000 0.00 0.00 0.00 3.71
938 1155 0.476771 ATCTCTCGTCTCCCTCTCCC 59.523 60.000 0.00 0.00 0.00 4.30
939 1156 0.914902 TCTCTCGTCTCCCTCTCCCA 60.915 60.000 0.00 0.00 0.00 4.37
940 1157 0.750182 CTCTCGTCTCCCTCTCCCAC 60.750 65.000 0.00 0.00 0.00 4.61
941 1158 1.208844 TCTCGTCTCCCTCTCCCACT 61.209 60.000 0.00 0.00 0.00 4.00
942 1159 0.750182 CTCGTCTCCCTCTCCCACTC 60.750 65.000 0.00 0.00 0.00 3.51
943 1160 1.755008 CGTCTCCCTCTCCCACTCC 60.755 68.421 0.00 0.00 0.00 3.85
944 1161 1.388531 GTCTCCCTCTCCCACTCCA 59.611 63.158 0.00 0.00 0.00 3.86
945 1162 0.031616 GTCTCCCTCTCCCACTCCAT 60.032 60.000 0.00 0.00 0.00 3.41
946 1163 0.263172 TCTCCCTCTCCCACTCCATC 59.737 60.000 0.00 0.00 0.00 3.51
947 1164 1.075970 TCCCTCTCCCACTCCATCG 60.076 63.158 0.00 0.00 0.00 3.84
948 1165 1.381872 CCCTCTCCCACTCCATCGT 60.382 63.158 0.00 0.00 0.00 3.73
955 1211 1.375396 CCACTCCATCGTTCCGCAA 60.375 57.895 0.00 0.00 0.00 4.85
981 1247 4.439057 ACTACGAACTCTTGTTGAGCAAA 58.561 39.130 0.00 0.00 46.41 3.68
982 1248 5.057149 ACTACGAACTCTTGTTGAGCAAAT 58.943 37.500 0.00 0.00 46.41 2.32
995 1273 2.698274 TGAGCAAATATCCGACTAGCCA 59.302 45.455 0.00 0.00 0.00 4.75
1020 1300 3.507233 ACATGGTTTCGTCAATGAAGCAT 59.493 39.130 0.00 0.00 31.49 3.79
1021 1304 3.829886 TGGTTTCGTCAATGAAGCATC 57.170 42.857 1.99 0.00 31.49 3.91
1037 1323 2.131405 ATCACAGAGATGAGGCCGG 58.869 57.895 0.00 0.00 35.06 6.13
1042 1328 4.537433 GAGATGAGGCCGGCGCTT 62.537 66.667 22.54 13.17 34.44 4.68
1439 2236 5.249420 AGCTCCATTGGTTTCTTTCTAGTC 58.751 41.667 1.86 0.00 0.00 2.59
1441 2238 5.223449 TCCATTGGTTTCTTTCTAGTCGT 57.777 39.130 1.86 0.00 0.00 4.34
1466 2300 0.833949 TACTGGTTCACCTGTGTGCA 59.166 50.000 16.58 0.00 45.91 4.57
1522 2447 1.731709 TGTTGATCGCTGGTTCATTCG 59.268 47.619 0.00 0.00 0.00 3.34
1523 2448 1.732259 GTTGATCGCTGGTTCATTCGT 59.268 47.619 0.00 0.00 0.00 3.85
1524 2449 1.640428 TGATCGCTGGTTCATTCGTC 58.360 50.000 0.00 0.00 0.00 4.20
1525 2450 0.931005 GATCGCTGGTTCATTCGTCC 59.069 55.000 0.00 0.00 0.00 4.79
1526 2451 0.249120 ATCGCTGGTTCATTCGTCCA 59.751 50.000 0.00 0.00 0.00 4.02
1527 2452 0.249120 TCGCTGGTTCATTCGTCCAT 59.751 50.000 0.00 0.00 0.00 3.41
1528 2453 1.478916 TCGCTGGTTCATTCGTCCATA 59.521 47.619 0.00 0.00 0.00 2.74
1529 2454 2.102420 TCGCTGGTTCATTCGTCCATAT 59.898 45.455 0.00 0.00 0.00 1.78
1530 2455 2.872245 CGCTGGTTCATTCGTCCATATT 59.128 45.455 0.00 0.00 0.00 1.28
1531 2456 3.303329 CGCTGGTTCATTCGTCCATATTG 60.303 47.826 0.00 0.00 0.00 1.90
1532 2457 3.876914 GCTGGTTCATTCGTCCATATTGA 59.123 43.478 0.00 0.00 0.00 2.57
1533 2458 4.260784 GCTGGTTCATTCGTCCATATTGAC 60.261 45.833 0.00 0.00 0.00 3.18
1543 2468 4.750172 GTCCATATTGACGAACACGTAC 57.250 45.455 0.00 0.00 40.41 3.67
1544 2469 4.168014 GTCCATATTGACGAACACGTACA 58.832 43.478 0.00 0.00 40.41 2.90
1545 2470 4.802039 GTCCATATTGACGAACACGTACAT 59.198 41.667 0.00 0.00 40.41 2.29
1546 2471 5.972973 GTCCATATTGACGAACACGTACATA 59.027 40.000 0.00 0.00 40.41 2.29
1547 2472 6.639686 GTCCATATTGACGAACACGTACATAT 59.360 38.462 0.00 0.00 40.41 1.78
1548 2473 7.168637 GTCCATATTGACGAACACGTACATATT 59.831 37.037 0.00 0.00 40.41 1.28
1549 2474 7.707464 TCCATATTGACGAACACGTACATATTT 59.293 33.333 0.00 0.00 40.41 1.40
1550 2475 8.002107 CCATATTGACGAACACGTACATATTTC 58.998 37.037 0.00 0.00 40.41 2.17
1551 2476 5.424518 TTGACGAACACGTACATATTTCG 57.575 39.130 11.99 11.99 43.61 3.46
1552 2477 3.853103 TGACGAACACGTACATATTTCGG 59.147 43.478 15.90 3.83 42.58 4.30
1553 2478 3.181397 ACGAACACGTACATATTTCGGG 58.819 45.455 15.90 1.22 42.58 5.14
1554 2479 3.119531 ACGAACACGTACATATTTCGGGA 60.120 43.478 15.90 0.00 42.58 5.14
1555 2480 3.241322 CGAACACGTACATATTTCGGGAC 59.759 47.826 0.00 0.00 36.32 4.46
1556 2481 4.427312 GAACACGTACATATTTCGGGACT 58.573 43.478 0.00 0.00 0.00 3.85
1557 2482 4.460948 ACACGTACATATTTCGGGACTT 57.539 40.909 0.00 0.00 0.00 3.01
1558 2483 4.178540 ACACGTACATATTTCGGGACTTG 58.821 43.478 0.00 0.00 0.00 3.16
1559 2484 4.178540 CACGTACATATTTCGGGACTTGT 58.821 43.478 0.00 0.00 0.00 3.16
1560 2485 4.266976 CACGTACATATTTCGGGACTTGTC 59.733 45.833 0.00 0.00 0.00 3.18
1561 2486 3.800506 CGTACATATTTCGGGACTTGTCC 59.199 47.826 11.13 11.13 0.00 4.02
1562 2487 3.992943 ACATATTTCGGGACTTGTCCA 57.007 42.857 19.90 1.45 0.00 4.02
1563 2488 4.503714 ACATATTTCGGGACTTGTCCAT 57.496 40.909 19.90 8.46 0.00 3.41
1564 2489 4.855340 ACATATTTCGGGACTTGTCCATT 58.145 39.130 19.90 3.95 0.00 3.16
1565 2490 4.881850 ACATATTTCGGGACTTGTCCATTC 59.118 41.667 19.90 3.73 0.00 2.67
1566 2491 1.803334 TTTCGGGACTTGTCCATTCG 58.197 50.000 19.90 14.35 0.00 3.34
1571 2496 1.804748 GGGACTTGTCCATTCGTTCAC 59.195 52.381 19.90 0.00 0.00 3.18
1595 2520 8.114290 CACTTTGACGTACATGTACATATTTCC 58.886 37.037 30.17 8.48 35.87 3.13
1596 2521 8.038944 ACTTTGACGTACATGTACATATTTCCT 58.961 33.333 30.17 7.96 35.87 3.36
1737 3071 3.952535 GGACGAATTCCATGTGCAATAC 58.047 45.455 0.00 0.00 45.10 1.89
1741 3075 5.640732 ACGAATTCCATGTGCAATACTTTC 58.359 37.500 0.00 0.00 0.00 2.62
1799 3198 3.201290 CTCACATGCTACCATCTCCAAC 58.799 50.000 0.00 0.00 0.00 3.77
1809 3208 1.271001 CCATCTCCAACTGTCTGCACA 60.271 52.381 0.00 0.00 0.00 4.57
1898 3297 8.699749 GTTTAGACTTTGGAATAACATGCAAAC 58.300 33.333 0.00 0.00 35.98 2.93
1900 3299 5.009610 AGACTTTGGAATAACATGCAAACGT 59.990 36.000 0.00 0.00 35.98 3.99
1951 3350 7.532682 AAACAAACAAATGTGACAATACACC 57.467 32.000 0.00 0.00 39.69 4.16
1959 3358 3.601435 TGTGACAATACACCATAACCCG 58.399 45.455 0.00 0.00 39.69 5.28
1984 3383 6.775629 GCATAAATTTTGTATCCCCACCTAGA 59.224 38.462 0.00 0.00 0.00 2.43
2000 3402 2.872858 CCTAGATTTGGCCTTAAGTCGC 59.127 50.000 3.32 0.00 0.00 5.19
2008 3410 2.092291 CCTTAAGTCGCGCGCTCAA 61.092 57.895 30.48 16.68 0.00 3.02
2028 3430 3.768468 ACACAACCAACCAGTTTTACG 57.232 42.857 0.00 0.00 0.00 3.18
2029 3431 3.083293 ACACAACCAACCAGTTTTACGT 58.917 40.909 0.00 0.00 0.00 3.57
2033 3435 4.217983 ACAACCAACCAGTTTTACGTCAAA 59.782 37.500 0.00 0.00 0.00 2.69
2034 3436 5.162075 CAACCAACCAGTTTTACGTCAAAA 58.838 37.500 0.00 0.00 33.66 2.44
2035 3437 5.388408 ACCAACCAGTTTTACGTCAAAAA 57.612 34.783 0.00 0.00 37.85 1.94
2073 3475 1.276421 ACTTGTTCGTGGAGGGAGATG 59.724 52.381 0.00 0.00 0.00 2.90
2074 3476 0.613260 TTGTTCGTGGAGGGAGATGG 59.387 55.000 0.00 0.00 0.00 3.51
2098 3500 0.032130 CCACATAGACCATCGACCGG 59.968 60.000 0.00 0.00 0.00 5.28
2124 3526 1.197721 CTTAGGAGCTGCACGTTTTGG 59.802 52.381 8.35 0.00 0.00 3.28
2126 3528 0.751643 AGGAGCTGCACGTTTTGGTT 60.752 50.000 8.35 0.00 0.00 3.67
2127 3529 0.594796 GGAGCTGCACGTTTTGGTTG 60.595 55.000 0.00 0.00 0.00 3.77
2128 3530 0.594796 GAGCTGCACGTTTTGGTTGG 60.595 55.000 1.02 0.00 0.00 3.77
2129 3531 1.034838 AGCTGCACGTTTTGGTTGGA 61.035 50.000 1.02 0.00 0.00 3.53
2134 3536 2.190161 GCACGTTTTGGTTGGACTTTC 58.810 47.619 0.00 0.00 0.00 2.62
2136 3538 3.674955 GCACGTTTTGGTTGGACTTTCTT 60.675 43.478 0.00 0.00 0.00 2.52
2140 3542 5.047590 ACGTTTTGGTTGGACTTTCTTTCTT 60.048 36.000 0.00 0.00 0.00 2.52
2145 3547 7.469537 TTGGTTGGACTTTCTTTCTTGTTTA 57.530 32.000 0.00 0.00 0.00 2.01
2146 3548 7.469537 TGGTTGGACTTTCTTTCTTGTTTAA 57.530 32.000 0.00 0.00 0.00 1.52
2148 3550 8.368668 TGGTTGGACTTTCTTTCTTGTTTAAAA 58.631 29.630 0.00 0.00 0.00 1.52
2184 3586 8.257306 TGCATTTATAGGAATGACGCATCTATA 58.743 33.333 1.99 0.00 38.93 1.31
2248 3681 2.578021 AGAGTGCATAACCCCAAGTCAT 59.422 45.455 0.00 0.00 0.00 3.06
2256 3689 2.354729 CCCAAGTCATGCGGGGAA 59.645 61.111 11.65 0.00 43.57 3.97
2353 3914 4.655762 TGCTCGATGTGCTAGAAGTAAT 57.344 40.909 0.00 0.00 0.00 1.89
2357 3918 5.576447 TCGATGTGCTAGAAGTAATGACA 57.424 39.130 0.00 0.00 0.00 3.58
2359 3920 4.742167 CGATGTGCTAGAAGTAATGACAGG 59.258 45.833 0.00 0.00 0.00 4.00
2360 3921 5.665459 GATGTGCTAGAAGTAATGACAGGT 58.335 41.667 0.00 0.00 0.00 4.00
2380 3941 4.699735 AGGTAACAATGCGTTGAATCATCA 59.300 37.500 25.13 0.00 38.63 3.07
2388 3949 3.252944 TGCGTTGAATCATCAGCAGAAAA 59.747 39.130 4.22 0.00 36.66 2.29
2398 3959 5.858381 TCATCAGCAGAAAAAGACACTAGT 58.142 37.500 0.00 0.00 0.00 2.57
2403 3964 7.892609 TCAGCAGAAAAAGACACTAGTGTATA 58.107 34.615 27.98 3.47 45.05 1.47
2407 3968 7.148623 GCAGAAAAAGACACTAGTGTATACCAC 60.149 40.741 27.98 14.50 45.05 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 2.727392 CCGGGGCAATGACTACGGA 61.727 63.158 15.57 0.00 43.69 4.69
181 183 0.319555 ACAGACAATGACGACACCGG 60.320 55.000 0.00 0.00 40.78 5.28
195 197 2.158449 CGAGGAACAAGCAATCACAGAC 59.842 50.000 0.00 0.00 0.00 3.51
199 201 1.808411 TCCGAGGAACAAGCAATCAC 58.192 50.000 0.00 0.00 0.00 3.06
217 219 0.385723 GAGGTACGCGGTCGATCATC 60.386 60.000 12.47 0.00 39.41 2.92
218 220 1.653115 GAGGTACGCGGTCGATCAT 59.347 57.895 12.47 0.00 39.41 2.45
219 221 3.104766 GAGGTACGCGGTCGATCA 58.895 61.111 12.47 0.00 39.41 2.92
236 238 7.041984 GGTTAGCCTTCTGTTAGAATAAATCCG 60.042 40.741 0.00 0.00 33.13 4.18
252 254 1.278413 AGAAACTCCCGGTTAGCCTTC 59.722 52.381 0.00 4.75 37.12 3.46
253 255 1.278413 GAGAAACTCCCGGTTAGCCTT 59.722 52.381 0.00 0.00 37.12 4.35
254 256 0.903236 GAGAAACTCCCGGTTAGCCT 59.097 55.000 0.00 0.00 37.12 4.58
275 277 4.078516 ACACCGCCCGCTCCTTAC 62.079 66.667 0.00 0.00 0.00 2.34
276 278 3.766691 GACACCGCCCGCTCCTTA 61.767 66.667 0.00 0.00 0.00 2.69
287 289 1.577328 AAAGAGCGCATTGGACACCG 61.577 55.000 11.47 0.00 0.00 4.94
289 291 0.730494 GCAAAGAGCGCATTGGACAC 60.730 55.000 11.47 0.00 0.00 3.67
290 292 1.580942 GCAAAGAGCGCATTGGACA 59.419 52.632 11.47 0.00 0.00 4.02
291 293 4.465413 GCAAAGAGCGCATTGGAC 57.535 55.556 11.47 0.00 0.00 4.02
300 302 2.032030 TGCGTCAAGTTTAGCAAAGAGC 60.032 45.455 0.00 0.00 46.19 4.09
301 303 3.494626 TCTGCGTCAAGTTTAGCAAAGAG 59.505 43.478 0.00 0.00 39.26 2.85
302 304 3.462982 TCTGCGTCAAGTTTAGCAAAGA 58.537 40.909 0.00 0.00 39.26 2.52
303 305 3.494626 TCTCTGCGTCAAGTTTAGCAAAG 59.505 43.478 0.00 0.00 39.26 2.77
304 306 3.462982 TCTCTGCGTCAAGTTTAGCAAA 58.537 40.909 0.00 0.00 39.26 3.68
308 356 5.066634 TCCTCTATCTCTGCGTCAAGTTTAG 59.933 44.000 0.00 0.00 0.00 1.85
309 357 4.948004 TCCTCTATCTCTGCGTCAAGTTTA 59.052 41.667 0.00 0.00 0.00 2.01
312 360 3.006112 TCCTCTATCTCTGCGTCAAGT 57.994 47.619 0.00 0.00 0.00 3.16
314 362 3.621558 TCTTCCTCTATCTCTGCGTCAA 58.378 45.455 0.00 0.00 0.00 3.18
316 364 2.031157 GCTCTTCCTCTATCTCTGCGTC 60.031 54.545 0.00 0.00 0.00 5.19
321 369 1.203001 CCGGGCTCTTCCTCTATCTCT 60.203 57.143 0.00 0.00 34.39 3.10
325 373 1.152226 CCCCGGGCTCTTCCTCTAT 60.152 63.158 17.73 0.00 34.39 1.98
326 374 2.282446 CCCCGGGCTCTTCCTCTA 59.718 66.667 17.73 0.00 34.39 2.43
343 391 4.527583 CTCCTCCTGCTGCTCCGC 62.528 72.222 0.00 0.00 0.00 5.54
345 393 4.173924 GGCTCCTCCTGCTGCTCC 62.174 72.222 0.00 0.00 0.00 4.70
349 397 3.847602 CTCCGGCTCCTCCTGCTG 61.848 72.222 0.00 0.00 36.63 4.41
367 415 2.857575 TACATGGACGGCAGCTGCAG 62.858 60.000 37.63 35.30 44.36 4.41
368 416 2.953488 TACATGGACGGCAGCTGCA 61.953 57.895 37.63 19.39 44.36 4.41
370 418 1.815421 GGTACATGGACGGCAGCTG 60.815 63.158 10.11 10.11 0.00 4.24
371 419 2.584608 GGTACATGGACGGCAGCT 59.415 61.111 0.92 0.00 0.00 4.24
373 421 2.202878 CGGGTACATGGACGGCAG 60.203 66.667 0.92 0.00 0.00 4.85
374 422 3.776781 CCGGGTACATGGACGGCA 61.777 66.667 0.92 0.00 39.85 5.69
375 423 3.441011 CTCCGGGTACATGGACGGC 62.441 68.421 0.00 0.00 45.58 5.68
377 425 2.106332 GCTCCGGGTACATGGACG 59.894 66.667 0.00 0.00 31.16 4.79
378 426 1.144057 CAGCTCCGGGTACATGGAC 59.856 63.158 0.00 0.00 31.16 4.02
379 427 2.063979 CCAGCTCCGGGTACATGGA 61.064 63.158 0.00 5.33 33.39 3.41
380 428 2.505982 CCAGCTCCGGGTACATGG 59.494 66.667 0.00 0.00 0.00 3.66
381 429 2.505982 CCCAGCTCCGGGTACATG 59.494 66.667 0.00 0.00 41.83 3.21
388 436 1.845627 ATATCCATGCCCAGCTCCGG 61.846 60.000 0.00 0.00 0.00 5.14
389 437 0.904649 TATATCCATGCCCAGCTCCG 59.095 55.000 0.00 0.00 0.00 4.63
390 438 1.912043 ACTATATCCATGCCCAGCTCC 59.088 52.381 0.00 0.00 0.00 4.70
392 440 1.552337 CGACTATATCCATGCCCAGCT 59.448 52.381 0.00 0.00 0.00 4.24
395 443 1.544246 CGTCGACTATATCCATGCCCA 59.456 52.381 14.70 0.00 0.00 5.36
396 444 1.544691 ACGTCGACTATATCCATGCCC 59.455 52.381 14.70 0.00 0.00 5.36
398 446 4.049186 ACAAACGTCGACTATATCCATGC 58.951 43.478 14.70 0.00 0.00 4.06
399 447 5.173312 GTCACAAACGTCGACTATATCCATG 59.827 44.000 14.70 4.05 0.00 3.66
400 448 5.279384 GTCACAAACGTCGACTATATCCAT 58.721 41.667 14.70 0.00 0.00 3.41
401 449 4.665212 GTCACAAACGTCGACTATATCCA 58.335 43.478 14.70 0.00 0.00 3.41
402 450 3.722780 CGTCACAAACGTCGACTATATCC 59.277 47.826 14.70 0.00 46.42 2.59
403 451 4.908266 CGTCACAAACGTCGACTATATC 57.092 45.455 14.70 0.00 46.42 1.63
415 463 4.167268 CCTAGCTACTTCTCGTCACAAAC 58.833 47.826 0.00 0.00 0.00 2.93
416 464 3.825014 ACCTAGCTACTTCTCGTCACAAA 59.175 43.478 0.00 0.00 0.00 2.83
417 465 3.418995 ACCTAGCTACTTCTCGTCACAA 58.581 45.455 0.00 0.00 0.00 3.33
418 466 3.069079 ACCTAGCTACTTCTCGTCACA 57.931 47.619 0.00 0.00 0.00 3.58
419 467 5.528320 AGATTACCTAGCTACTTCTCGTCAC 59.472 44.000 0.00 0.00 0.00 3.67
420 468 5.682659 AGATTACCTAGCTACTTCTCGTCA 58.317 41.667 0.00 0.00 0.00 4.35
421 469 6.128849 CGTAGATTACCTAGCTACTTCTCGTC 60.129 46.154 0.00 0.00 33.95 4.20
422 470 5.695816 CGTAGATTACCTAGCTACTTCTCGT 59.304 44.000 0.00 0.00 33.95 4.18
423 471 5.695816 ACGTAGATTACCTAGCTACTTCTCG 59.304 44.000 0.00 0.00 33.95 4.04
424 472 6.128849 CGACGTAGATTACCTAGCTACTTCTC 60.129 46.154 0.00 0.00 33.66 2.87
425 473 5.695816 CGACGTAGATTACCTAGCTACTTCT 59.304 44.000 0.00 0.00 33.66 2.85
426 474 5.465056 ACGACGTAGATTACCTAGCTACTTC 59.535 44.000 0.00 0.00 33.95 3.01
427 475 5.363939 ACGACGTAGATTACCTAGCTACTT 58.636 41.667 0.00 0.00 33.95 2.24
428 476 4.954875 ACGACGTAGATTACCTAGCTACT 58.045 43.478 0.00 0.00 33.95 2.57
429 477 6.422400 ACTTACGACGTAGATTACCTAGCTAC 59.578 42.308 7.89 0.00 33.04 3.58
430 478 6.516718 ACTTACGACGTAGATTACCTAGCTA 58.483 40.000 7.89 0.00 0.00 3.32
431 479 5.363939 ACTTACGACGTAGATTACCTAGCT 58.636 41.667 7.89 0.00 0.00 3.32
432 480 5.665381 ACTTACGACGTAGATTACCTAGC 57.335 43.478 7.89 0.00 0.00 3.42
433 481 6.926272 ACCTACTTACGACGTAGATTACCTAG 59.074 42.308 7.89 2.93 37.18 3.02
434 482 6.817184 ACCTACTTACGACGTAGATTACCTA 58.183 40.000 7.89 0.00 37.18 3.08
435 483 5.675538 ACCTACTTACGACGTAGATTACCT 58.324 41.667 7.89 0.00 37.18 3.08
436 484 5.993106 ACCTACTTACGACGTAGATTACC 57.007 43.478 7.89 0.00 37.18 2.85
437 485 8.578769 CAAAAACCTACTTACGACGTAGATTAC 58.421 37.037 7.89 0.00 37.18 1.89
438 486 7.754924 CCAAAAACCTACTTACGACGTAGATTA 59.245 37.037 7.89 0.76 37.18 1.75
439 487 6.587608 CCAAAAACCTACTTACGACGTAGATT 59.412 38.462 7.89 0.00 37.18 2.40
440 488 6.095377 CCAAAAACCTACTTACGACGTAGAT 58.905 40.000 7.89 3.30 37.18 1.98
441 489 5.009610 ACCAAAAACCTACTTACGACGTAGA 59.990 40.000 7.89 0.00 37.18 2.59
442 490 5.222631 ACCAAAAACCTACTTACGACGTAG 58.777 41.667 7.89 5.51 35.30 3.51
443 491 5.195001 ACCAAAAACCTACTTACGACGTA 57.805 39.130 2.97 2.97 0.00 3.57
444 492 4.058721 ACCAAAAACCTACTTACGACGT 57.941 40.909 5.52 5.52 0.00 4.34
445 493 5.199726 CAAACCAAAAACCTACTTACGACG 58.800 41.667 0.00 0.00 0.00 5.12
446 494 4.971830 GCAAACCAAAAACCTACTTACGAC 59.028 41.667 0.00 0.00 0.00 4.34
447 495 4.639310 TGCAAACCAAAAACCTACTTACGA 59.361 37.500 0.00 0.00 0.00 3.43
448 496 4.922719 TGCAAACCAAAAACCTACTTACG 58.077 39.130 0.00 0.00 0.00 3.18
449 497 5.176774 GCATGCAAACCAAAAACCTACTTAC 59.823 40.000 14.21 0.00 0.00 2.34
450 498 5.069781 AGCATGCAAACCAAAAACCTACTTA 59.930 36.000 21.98 0.00 0.00 2.24
451 499 4.126437 GCATGCAAACCAAAAACCTACTT 58.874 39.130 14.21 0.00 0.00 2.24
452 500 3.387699 AGCATGCAAACCAAAAACCTACT 59.612 39.130 21.98 0.00 0.00 2.57
453 501 3.727726 AGCATGCAAACCAAAAACCTAC 58.272 40.909 21.98 0.00 0.00 3.18
454 502 4.100808 AGAAGCATGCAAACCAAAAACCTA 59.899 37.500 21.98 0.00 0.00 3.08
455 503 3.118298 AGAAGCATGCAAACCAAAAACCT 60.118 39.130 21.98 0.00 0.00 3.50
456 504 3.002553 CAGAAGCATGCAAACCAAAAACC 59.997 43.478 21.98 0.00 0.00 3.27
457 505 3.622612 ACAGAAGCATGCAAACCAAAAAC 59.377 39.130 21.98 0.00 0.00 2.43
458 506 3.871485 ACAGAAGCATGCAAACCAAAAA 58.129 36.364 21.98 0.00 0.00 1.94
459 507 3.540314 ACAGAAGCATGCAAACCAAAA 57.460 38.095 21.98 0.00 0.00 2.44
460 508 4.558178 CATACAGAAGCATGCAAACCAAA 58.442 39.130 21.98 0.00 0.00 3.28
461 509 3.056678 CCATACAGAAGCATGCAAACCAA 60.057 43.478 21.98 0.99 0.00 3.67
462 510 2.492881 CCATACAGAAGCATGCAAACCA 59.507 45.455 21.98 0.01 0.00 3.67
463 511 2.754552 TCCATACAGAAGCATGCAAACC 59.245 45.455 21.98 5.50 0.00 3.27
464 512 4.439305 TTCCATACAGAAGCATGCAAAC 57.561 40.909 21.98 10.44 0.00 2.93
465 513 5.664294 AATTCCATACAGAAGCATGCAAA 57.336 34.783 21.98 0.00 0.00 3.68
466 514 6.602803 TCTTAATTCCATACAGAAGCATGCAA 59.397 34.615 21.98 0.90 0.00 4.08
467 515 6.121590 TCTTAATTCCATACAGAAGCATGCA 58.878 36.000 21.98 0.00 0.00 3.96
468 516 6.624352 TCTTAATTCCATACAGAAGCATGC 57.376 37.500 10.51 10.51 0.00 4.06
471 519 9.905713 ACTAAATCTTAATTCCATACAGAAGCA 57.094 29.630 0.00 0.00 0.00 3.91
487 535 9.976511 CATCCGAACACCTTATACTAAATCTTA 57.023 33.333 0.00 0.00 0.00 2.10
488 536 8.483758 ACATCCGAACACCTTATACTAAATCTT 58.516 33.333 0.00 0.00 0.00 2.40
489 537 8.019656 ACATCCGAACACCTTATACTAAATCT 57.980 34.615 0.00 0.00 0.00 2.40
490 538 9.408069 CTACATCCGAACACCTTATACTAAATC 57.592 37.037 0.00 0.00 0.00 2.17
491 539 8.921205 ACTACATCCGAACACCTTATACTAAAT 58.079 33.333 0.00 0.00 0.00 1.40
492 540 8.297470 ACTACATCCGAACACCTTATACTAAA 57.703 34.615 0.00 0.00 0.00 1.85
493 541 7.886629 ACTACATCCGAACACCTTATACTAA 57.113 36.000 0.00 0.00 0.00 2.24
494 542 7.340232 ACAACTACATCCGAACACCTTATACTA 59.660 37.037 0.00 0.00 0.00 1.82
495 543 6.154021 ACAACTACATCCGAACACCTTATACT 59.846 38.462 0.00 0.00 0.00 2.12
496 544 6.255020 CACAACTACATCCGAACACCTTATAC 59.745 42.308 0.00 0.00 0.00 1.47
497 545 6.334989 CACAACTACATCCGAACACCTTATA 58.665 40.000 0.00 0.00 0.00 0.98
498 546 5.175859 CACAACTACATCCGAACACCTTAT 58.824 41.667 0.00 0.00 0.00 1.73
499 547 4.561938 CCACAACTACATCCGAACACCTTA 60.562 45.833 0.00 0.00 0.00 2.69
500 548 3.399330 CACAACTACATCCGAACACCTT 58.601 45.455 0.00 0.00 0.00 3.50
501 549 2.289444 CCACAACTACATCCGAACACCT 60.289 50.000 0.00 0.00 0.00 4.00
502 550 2.073816 CCACAACTACATCCGAACACC 58.926 52.381 0.00 0.00 0.00 4.16
503 551 2.762745 ACCACAACTACATCCGAACAC 58.237 47.619 0.00 0.00 0.00 3.32
504 552 4.603989 TTACCACAACTACATCCGAACA 57.396 40.909 0.00 0.00 0.00 3.18
505 553 6.490566 AAATTACCACAACTACATCCGAAC 57.509 37.500 0.00 0.00 0.00 3.95
506 554 8.095792 TCTTAAATTACCACAACTACATCCGAA 58.904 33.333 0.00 0.00 0.00 4.30
507 555 7.613585 TCTTAAATTACCACAACTACATCCGA 58.386 34.615 0.00 0.00 0.00 4.55
508 556 7.837202 TCTTAAATTACCACAACTACATCCG 57.163 36.000 0.00 0.00 0.00 4.18
509 557 9.227777 ACTTCTTAAATTACCACAACTACATCC 57.772 33.333 0.00 0.00 0.00 3.51
511 559 9.569122 ACACTTCTTAAATTACCACAACTACAT 57.431 29.630 0.00 0.00 0.00 2.29
512 560 8.967664 ACACTTCTTAAATTACCACAACTACA 57.032 30.769 0.00 0.00 0.00 2.74
513 561 9.269453 AGACACTTCTTAAATTACCACAACTAC 57.731 33.333 0.00 0.00 0.00 2.73
514 562 9.268268 CAGACACTTCTTAAATTACCACAACTA 57.732 33.333 0.00 0.00 0.00 2.24
515 563 7.990886 TCAGACACTTCTTAAATTACCACAACT 59.009 33.333 0.00 0.00 0.00 3.16
516 564 8.149973 TCAGACACTTCTTAAATTACCACAAC 57.850 34.615 0.00 0.00 0.00 3.32
517 565 8.918202 ATCAGACACTTCTTAAATTACCACAA 57.082 30.769 0.00 0.00 0.00 3.33
518 566 8.154203 TGATCAGACACTTCTTAAATTACCACA 58.846 33.333 0.00 0.00 0.00 4.17
519 567 8.547967 TGATCAGACACTTCTTAAATTACCAC 57.452 34.615 0.00 0.00 0.00 4.16
520 568 9.739276 AATGATCAGACACTTCTTAAATTACCA 57.261 29.630 0.09 0.00 0.00 3.25
521 569 9.994432 CAATGATCAGACACTTCTTAAATTACC 57.006 33.333 0.09 0.00 0.00 2.85
522 570 9.495754 GCAATGATCAGACACTTCTTAAATTAC 57.504 33.333 0.09 0.00 0.00 1.89
523 571 8.677300 GGCAATGATCAGACACTTCTTAAATTA 58.323 33.333 0.09 0.00 0.00 1.40
524 572 7.177216 TGGCAATGATCAGACACTTCTTAAATT 59.823 33.333 0.09 0.00 0.00 1.82
525 573 6.660521 TGGCAATGATCAGACACTTCTTAAAT 59.339 34.615 0.09 0.00 0.00 1.40
526 574 6.003326 TGGCAATGATCAGACACTTCTTAAA 58.997 36.000 0.09 0.00 0.00 1.52
527 575 5.412594 GTGGCAATGATCAGACACTTCTTAA 59.587 40.000 12.55 0.00 0.00 1.85
528 576 4.937620 GTGGCAATGATCAGACACTTCTTA 59.062 41.667 12.55 0.00 0.00 2.10
529 577 3.755378 GTGGCAATGATCAGACACTTCTT 59.245 43.478 12.55 0.00 0.00 2.52
530 578 3.341823 GTGGCAATGATCAGACACTTCT 58.658 45.455 12.55 0.00 0.00 2.85
531 579 2.094894 CGTGGCAATGATCAGACACTTC 59.905 50.000 16.48 0.00 0.00 3.01
532 580 2.079158 CGTGGCAATGATCAGACACTT 58.921 47.619 16.48 0.00 0.00 3.16
533 581 1.676916 CCGTGGCAATGATCAGACACT 60.677 52.381 16.48 0.00 0.00 3.55
534 582 0.729116 CCGTGGCAATGATCAGACAC 59.271 55.000 10.26 10.26 0.00 3.67
535 583 0.612744 TCCGTGGCAATGATCAGACA 59.387 50.000 0.09 0.00 0.00 3.41
536 584 1.009829 GTCCGTGGCAATGATCAGAC 58.990 55.000 0.09 0.00 0.00 3.51
537 585 0.460109 CGTCCGTGGCAATGATCAGA 60.460 55.000 0.09 0.00 0.00 3.27
538 586 0.740868 ACGTCCGTGGCAATGATCAG 60.741 55.000 0.09 0.00 0.00 2.90
539 587 1.018752 CACGTCCGTGGCAATGATCA 61.019 55.000 11.83 0.00 42.00 2.92
540 588 1.715585 CACGTCCGTGGCAATGATC 59.284 57.895 11.83 0.00 42.00 2.92
541 589 3.889227 CACGTCCGTGGCAATGAT 58.111 55.556 11.83 0.00 42.00 2.45
553 601 0.511221 CGGACATGTTTGGACACGTC 59.489 55.000 0.00 0.00 45.59 4.34
554 602 0.179067 ACGGACATGTTTGGACACGT 60.179 50.000 0.00 0.18 38.91 4.49
555 603 1.785768 TACGGACATGTTTGGACACG 58.214 50.000 0.00 0.00 38.91 4.49
556 604 3.605231 CGTTTACGGACATGTTTGGACAC 60.605 47.826 0.00 0.00 35.54 3.67
557 605 2.544686 CGTTTACGGACATGTTTGGACA 59.455 45.455 0.00 0.00 36.53 4.02
558 606 2.545106 ACGTTTACGGACATGTTTGGAC 59.455 45.455 0.00 0.00 44.95 4.02
559 607 2.836262 ACGTTTACGGACATGTTTGGA 58.164 42.857 0.00 0.00 44.95 3.53
560 608 3.612472 AACGTTTACGGACATGTTTGG 57.388 42.857 0.00 0.00 44.95 3.28
561 609 5.622041 CCTAAAACGTTTACGGACATGTTTG 59.378 40.000 15.03 0.00 44.95 2.93
562 610 5.277925 CCCTAAAACGTTTACGGACATGTTT 60.278 40.000 22.92 0.00 44.95 2.83
563 611 4.213906 CCCTAAAACGTTTACGGACATGTT 59.786 41.667 22.92 5.23 44.95 2.71
564 612 3.747529 CCCTAAAACGTTTACGGACATGT 59.252 43.478 22.92 0.00 44.95 3.21
565 613 3.125658 CCCCTAAAACGTTTACGGACATG 59.874 47.826 22.92 10.83 44.95 3.21
566 614 3.244526 ACCCCTAAAACGTTTACGGACAT 60.245 43.478 22.92 7.12 44.95 3.06
567 615 2.103941 ACCCCTAAAACGTTTACGGACA 59.896 45.455 22.92 3.61 44.95 4.02
568 616 2.736721 GACCCCTAAAACGTTTACGGAC 59.263 50.000 22.92 13.22 44.95 4.79
569 617 2.366916 TGACCCCTAAAACGTTTACGGA 59.633 45.455 22.92 7.21 44.95 4.69
570 618 2.765122 TGACCCCTAAAACGTTTACGG 58.235 47.619 15.03 16.38 44.95 4.02
571 619 6.667007 AATATGACCCCTAAAACGTTTACG 57.333 37.500 15.03 8.15 46.33 3.18
573 621 9.902684 TGATAAATATGACCCCTAAAACGTTTA 57.097 29.630 15.03 2.21 0.00 2.01
574 622 8.810990 TGATAAATATGACCCCTAAAACGTTT 57.189 30.769 7.96 7.96 0.00 3.60
575 623 8.990163 ATGATAAATATGACCCCTAAAACGTT 57.010 30.769 0.00 0.00 0.00 3.99
580 628 9.973661 CCACATATGATAAATATGACCCCTAAA 57.026 33.333 10.38 0.00 36.23 1.85
581 629 9.122954 ACCACATATGATAAATATGACCCCTAA 57.877 33.333 10.38 0.00 36.23 2.69
582 630 8.694171 ACCACATATGATAAATATGACCCCTA 57.306 34.615 10.38 0.00 36.23 3.53
583 631 7.588866 ACCACATATGATAAATATGACCCCT 57.411 36.000 10.38 0.00 36.23 4.79
584 632 7.669722 ACAACCACATATGATAAATATGACCCC 59.330 37.037 10.38 0.00 36.23 4.95
585 633 8.635765 ACAACCACATATGATAAATATGACCC 57.364 34.615 10.38 0.00 36.23 4.46
592 640 9.507329 GACCATCTACAACCACATATGATAAAT 57.493 33.333 10.38 0.00 0.00 1.40
593 641 8.713971 AGACCATCTACAACCACATATGATAAA 58.286 33.333 10.38 0.00 0.00 1.40
594 642 8.262601 AGACCATCTACAACCACATATGATAA 57.737 34.615 10.38 0.00 0.00 1.75
595 643 7.855784 AGACCATCTACAACCACATATGATA 57.144 36.000 10.38 0.00 0.00 2.15
596 644 6.753913 AGACCATCTACAACCACATATGAT 57.246 37.500 10.38 0.00 0.00 2.45
597 645 6.070251 ACAAGACCATCTACAACCACATATGA 60.070 38.462 10.38 0.00 0.00 2.15
598 646 6.037500 CACAAGACCATCTACAACCACATATG 59.962 42.308 0.00 0.00 0.00 1.78
599 647 6.115446 CACAAGACCATCTACAACCACATAT 58.885 40.000 0.00 0.00 0.00 1.78
600 648 5.012664 ACACAAGACCATCTACAACCACATA 59.987 40.000 0.00 0.00 0.00 2.29
601 649 4.202461 ACACAAGACCATCTACAACCACAT 60.202 41.667 0.00 0.00 0.00 3.21
602 650 3.135712 ACACAAGACCATCTACAACCACA 59.864 43.478 0.00 0.00 0.00 4.17
603 651 3.740115 ACACAAGACCATCTACAACCAC 58.260 45.455 0.00 0.00 0.00 4.16
604 652 3.244422 GGACACAAGACCATCTACAACCA 60.244 47.826 0.00 0.00 0.00 3.67
605 653 3.244422 TGGACACAAGACCATCTACAACC 60.244 47.826 0.00 0.00 34.63 3.77
606 654 3.746492 GTGGACACAAGACCATCTACAAC 59.254 47.826 0.00 0.00 41.48 3.32
607 655 3.389656 TGTGGACACAAGACCATCTACAA 59.610 43.478 2.08 0.00 41.48 2.41
608 656 2.969262 TGTGGACACAAGACCATCTACA 59.031 45.455 2.08 0.00 41.48 2.74
609 657 3.678056 TGTGGACACAAGACCATCTAC 57.322 47.619 2.08 0.00 41.48 2.59
610 658 3.619733 GCATGTGGACACAAGACCATCTA 60.620 47.826 9.42 0.00 45.41 1.98
611 659 2.877300 GCATGTGGACACAAGACCATCT 60.877 50.000 9.42 0.00 45.41 2.90
612 660 1.470098 GCATGTGGACACAAGACCATC 59.530 52.381 9.42 0.00 45.41 3.51
613 661 1.202915 TGCATGTGGACACAAGACCAT 60.203 47.619 9.42 0.00 45.41 3.55
614 662 0.182299 TGCATGTGGACACAAGACCA 59.818 50.000 9.42 2.07 45.41 4.02
615 663 0.593128 GTGCATGTGGACACAAGACC 59.407 55.000 9.42 0.00 45.41 3.85
616 664 0.235665 CGTGCATGTGGACACAAGAC 59.764 55.000 9.42 5.68 45.41 3.01
617 665 0.179059 ACGTGCATGTGGACACAAGA 60.179 50.000 11.65 0.00 45.41 3.02
618 666 1.507562 TACGTGCATGTGGACACAAG 58.492 50.000 21.92 6.27 45.41 3.16
619 667 1.600013 GTTACGTGCATGTGGACACAA 59.400 47.619 21.92 3.65 45.41 3.33
620 668 1.222300 GTTACGTGCATGTGGACACA 58.778 50.000 21.92 7.68 46.44 3.72
621 669 0.515564 GGTTACGTGCATGTGGACAC 59.484 55.000 21.92 11.91 36.05 3.67
622 670 0.946700 CGGTTACGTGCATGTGGACA 60.947 55.000 21.92 0.00 36.05 4.02
680 729 1.181741 TCCTCTGCTCACGTCAGCTT 61.182 55.000 14.04 0.00 40.39 3.74
683 732 0.884514 TTCTCCTCTGCTCACGTCAG 59.115 55.000 0.00 0.00 0.00 3.51
684 733 0.884514 CTTCTCCTCTGCTCACGTCA 59.115 55.000 0.00 0.00 0.00 4.35
685 734 0.172352 CCTTCTCCTCTGCTCACGTC 59.828 60.000 0.00 0.00 0.00 4.34
689 743 2.317371 AGAACCTTCTCCTCTGCTCA 57.683 50.000 0.00 0.00 29.94 4.26
829 1043 1.400530 ATAGTGCTAGCGGTGGGGAC 61.401 60.000 10.77 0.19 0.00 4.46
914 1131 1.885887 GAGGGAGACGAGAGATGGATG 59.114 57.143 0.00 0.00 0.00 3.51
916 1133 1.142060 GAGAGGGAGACGAGAGATGGA 59.858 57.143 0.00 0.00 0.00 3.41
917 1134 1.604604 GAGAGGGAGACGAGAGATGG 58.395 60.000 0.00 0.00 0.00 3.51
918 1135 1.604604 GGAGAGGGAGACGAGAGATG 58.395 60.000 0.00 0.00 0.00 2.90
919 1136 0.476771 GGGAGAGGGAGACGAGAGAT 59.523 60.000 0.00 0.00 0.00 2.75
920 1137 0.914902 TGGGAGAGGGAGACGAGAGA 60.915 60.000 0.00 0.00 0.00 3.10
921 1138 0.750182 GTGGGAGAGGGAGACGAGAG 60.750 65.000 0.00 0.00 0.00 3.20
922 1139 1.208844 AGTGGGAGAGGGAGACGAGA 61.209 60.000 0.00 0.00 0.00 4.04
923 1140 0.750182 GAGTGGGAGAGGGAGACGAG 60.750 65.000 0.00 0.00 0.00 4.18
924 1141 1.303615 GAGTGGGAGAGGGAGACGA 59.696 63.158 0.00 0.00 0.00 4.20
925 1142 1.755008 GGAGTGGGAGAGGGAGACG 60.755 68.421 0.00 0.00 0.00 4.18
926 1143 0.031616 ATGGAGTGGGAGAGGGAGAC 60.032 60.000 0.00 0.00 0.00 3.36
927 1144 0.263172 GATGGAGTGGGAGAGGGAGA 59.737 60.000 0.00 0.00 0.00 3.71
928 1145 1.112315 CGATGGAGTGGGAGAGGGAG 61.112 65.000 0.00 0.00 0.00 4.30
929 1146 1.075970 CGATGGAGTGGGAGAGGGA 60.076 63.158 0.00 0.00 0.00 4.20
930 1147 0.978146 AACGATGGAGTGGGAGAGGG 60.978 60.000 0.00 0.00 0.00 4.30
931 1148 0.461961 GAACGATGGAGTGGGAGAGG 59.538 60.000 0.00 0.00 0.00 3.69
932 1149 0.461961 GGAACGATGGAGTGGGAGAG 59.538 60.000 0.00 0.00 0.00 3.20
933 1150 2.591915 GGAACGATGGAGTGGGAGA 58.408 57.895 0.00 0.00 0.00 3.71
947 1164 2.798847 AGTTCGTAGTTCTTTGCGGAAC 59.201 45.455 8.37 8.37 44.02 3.62
948 1165 3.054878 GAGTTCGTAGTTCTTTGCGGAA 58.945 45.455 0.00 0.00 0.00 4.30
955 1211 4.745620 GCTCAACAAGAGTTCGTAGTTCTT 59.254 41.667 0.00 0.00 46.47 2.52
981 1247 1.977056 TGTCGTGGCTAGTCGGATAT 58.023 50.000 0.00 0.00 0.00 1.63
982 1248 1.607148 CATGTCGTGGCTAGTCGGATA 59.393 52.381 0.00 0.00 0.00 2.59
1020 1300 2.725312 GCCGGCCTCATCTCTGTGA 61.725 63.158 18.11 0.00 0.00 3.58
1021 1304 2.202987 GCCGGCCTCATCTCTGTG 60.203 66.667 18.11 0.00 0.00 3.66
1037 1323 3.418744 GAGAGGGACGAGGAAGCGC 62.419 68.421 0.00 0.00 33.86 5.92
1040 1326 0.753848 GAGGGAGAGGGACGAGGAAG 60.754 65.000 0.00 0.00 0.00 3.46
1041 1327 1.215679 AGAGGGAGAGGGACGAGGAA 61.216 60.000 0.00 0.00 0.00 3.36
1042 1328 1.619975 AGAGGGAGAGGGACGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
1089 1381 3.044059 GCGGCGCATCTTCTTGCTT 62.044 57.895 29.21 0.00 40.54 3.91
1115 1410 3.598715 ACACGAACTCGCCGTCCA 61.599 61.111 0.00 0.00 44.43 4.02
1155 1450 1.900351 CAGAGCCTGGAATGACGGA 59.100 57.895 0.00 0.00 0.00 4.69
1243 1880 2.358737 CTTCTTGGTCGCCGGCTT 60.359 61.111 26.68 0.00 0.00 4.35
1386 2141 3.672295 GAGCTGGAGCAGAACGGGG 62.672 68.421 0.00 0.00 45.16 5.73
1439 2236 3.243975 ACAGGTGAACCAGTAAACCTACG 60.244 47.826 1.62 0.00 41.14 3.51
1441 2238 3.712733 ACACAGGTGAACCAGTAAACCTA 59.287 43.478 6.40 0.00 41.14 3.08
1466 2300 5.401550 CAGCAAATGTACAAATCCAATCGT 58.598 37.500 0.00 0.00 0.00 3.73
1533 2458 3.241322 GTCCCGAAATATGTACGTGTTCG 59.759 47.826 20.46 20.46 40.47 3.95
1534 2459 4.427312 AGTCCCGAAATATGTACGTGTTC 58.573 43.478 0.00 0.95 0.00 3.18
1535 2460 4.460948 AGTCCCGAAATATGTACGTGTT 57.539 40.909 0.00 0.00 0.00 3.32
1536 2461 4.178540 CAAGTCCCGAAATATGTACGTGT 58.821 43.478 0.00 0.00 0.00 4.49
1537 2462 4.178540 ACAAGTCCCGAAATATGTACGTG 58.821 43.478 0.00 0.00 0.00 4.49
1538 2463 4.427312 GACAAGTCCCGAAATATGTACGT 58.573 43.478 0.00 0.00 0.00 3.57
1539 2464 3.800506 GGACAAGTCCCGAAATATGTACG 59.199 47.826 8.06 0.00 43.94 3.67
1553 2478 4.272504 TCAAAGTGAACGAATGGACAAGTC 59.727 41.667 0.00 0.00 0.00 3.01
1554 2479 4.035208 GTCAAAGTGAACGAATGGACAAGT 59.965 41.667 0.00 0.00 0.00 3.16
1555 2480 4.527564 GTCAAAGTGAACGAATGGACAAG 58.472 43.478 0.00 0.00 0.00 3.16
1556 2481 3.001838 CGTCAAAGTGAACGAATGGACAA 59.998 43.478 0.00 0.00 0.00 3.18
1557 2482 2.542178 CGTCAAAGTGAACGAATGGACA 59.458 45.455 0.00 0.00 0.00 4.02
1558 2483 2.542595 ACGTCAAAGTGAACGAATGGAC 59.457 45.455 1.52 0.00 0.00 4.02
1559 2484 2.828877 ACGTCAAAGTGAACGAATGGA 58.171 42.857 1.52 0.00 0.00 3.41
1560 2485 3.491639 TGTACGTCAAAGTGAACGAATGG 59.508 43.478 0.00 0.00 0.00 3.16
1561 2486 4.702247 TGTACGTCAAAGTGAACGAATG 57.298 40.909 0.00 0.00 0.00 2.67
1562 2487 4.748102 ACATGTACGTCAAAGTGAACGAAT 59.252 37.500 0.00 0.00 0.00 3.34
1563 2488 4.114073 ACATGTACGTCAAAGTGAACGAA 58.886 39.130 0.00 0.00 0.00 3.85
1564 2489 3.708890 ACATGTACGTCAAAGTGAACGA 58.291 40.909 0.00 0.00 0.00 3.85
1565 2490 4.441744 TGTACATGTACGTCAAAGTGAACG 59.558 41.667 26.59 0.00 38.85 3.95
1566 2491 5.893512 TGTACATGTACGTCAAAGTGAAC 57.106 39.130 26.59 5.67 38.85 3.18
1571 2496 8.328146 CAGGAAATATGTACATGTACGTCAAAG 58.672 37.037 29.41 13.31 38.85 2.77
1595 2520 6.887368 TGTAATGAACGAATGAACAAGTCAG 58.113 36.000 0.00 0.00 40.43 3.51
1596 2521 6.704050 TCTGTAATGAACGAATGAACAAGTCA 59.296 34.615 0.00 0.00 41.67 3.41
1639 2680 8.121167 TGGAACAAAATAACAAACGAATCAAC 57.879 30.769 0.00 0.00 31.92 3.18
1683 2892 3.710326 TTATCAGGGTTGATCGACTCG 57.290 47.619 12.89 5.86 42.97 4.18
1722 3056 6.211184 TCAAAGGAAAGTATTGCACATGGAAT 59.789 34.615 3.99 3.99 39.44 3.01
1737 3071 8.553276 AGTCAAAGACCCTCTTTCAAAGGAAAG 61.553 40.741 10.19 10.19 42.60 2.62
1741 3075 4.464947 AGTCAAAGACCCTCTTTCAAAGG 58.535 43.478 0.00 0.00 42.60 3.11
1809 3208 4.503123 GGCCCAAGTGTATTTTGCTTTTCT 60.503 41.667 0.00 0.00 0.00 2.52
1814 3213 2.171003 GAGGCCCAAGTGTATTTTGCT 58.829 47.619 0.00 0.00 0.00 3.91
1837 3236 3.769739 TGTTGCCACTACTTCATGACT 57.230 42.857 0.00 0.00 0.00 3.41
1874 3273 7.081349 CGTTTGCATGTTATTCCAAAGTCTAA 58.919 34.615 0.00 0.00 0.00 2.10
1926 3325 8.251026 TGGTGTATTGTCACATTTGTTTGTTTA 58.749 29.630 0.00 0.00 39.76 2.01
1937 3336 4.196193 CGGGTTATGGTGTATTGTCACAT 58.804 43.478 0.00 0.00 39.76 3.21
1951 3350 6.866248 GGGATACAAAATTTATGCGGGTTATG 59.134 38.462 0.00 0.00 39.74 1.90
1959 3358 5.869649 AGGTGGGGATACAAAATTTATGC 57.130 39.130 0.00 0.00 39.74 3.14
1984 3383 1.800681 GCGCGACTTAAGGCCAAAT 59.199 52.632 12.10 0.00 0.00 2.32
2000 3402 1.654137 GTTGGTTGTGTTGAGCGCG 60.654 57.895 0.00 0.00 0.00 6.86
2008 3410 3.083293 ACGTAAAACTGGTTGGTTGTGT 58.917 40.909 0.00 0.00 0.00 3.72
2037 3439 9.745880 CACGAACAAGTATATACTTCTACCAAT 57.254 33.333 22.60 6.58 44.19 3.16
2041 3443 8.074972 CCTCCACGAACAAGTATATACTTCTAC 58.925 40.741 22.60 15.31 44.19 2.59
2044 3446 6.040166 TCCCTCCACGAACAAGTATATACTTC 59.960 42.308 22.60 12.72 44.19 3.01
2060 3462 0.462759 GCTTTCCATCTCCCTCCACG 60.463 60.000 0.00 0.00 0.00 4.94
2073 3475 2.158957 TCGATGGTCTATGTGGCTTTCC 60.159 50.000 0.00 0.00 0.00 3.13
2074 3476 2.866762 GTCGATGGTCTATGTGGCTTTC 59.133 50.000 0.00 0.00 0.00 2.62
2105 3507 1.234821 CCAAAACGTGCAGCTCCTAA 58.765 50.000 0.00 0.00 0.00 2.69
2106 3508 0.107831 ACCAAAACGTGCAGCTCCTA 59.892 50.000 0.00 0.00 0.00 2.94
2108 3510 0.594796 CAACCAAAACGTGCAGCTCC 60.595 55.000 0.00 0.00 0.00 4.70
2114 3516 2.159296 AGAAAGTCCAACCAAAACGTGC 60.159 45.455 0.00 0.00 0.00 5.34
2118 3520 6.163476 ACAAGAAAGAAAGTCCAACCAAAAC 58.837 36.000 0.00 0.00 0.00 2.43
2156 3558 6.432162 AGATGCGTCATTCCTATAAATGCATT 59.568 34.615 5.99 5.99 36.72 3.56
2165 3567 7.946381 TCTTCTATAGATGCGTCATTCCTAT 57.054 36.000 8.99 0.00 0.00 2.57
2229 3662 2.726821 CATGACTTGGGGTTATGCACT 58.273 47.619 0.00 0.00 35.64 4.40
2248 3681 3.792736 CGGATTCCCTTCCCCGCA 61.793 66.667 0.00 0.00 35.29 5.69
2300 3733 1.552792 GAGAGGGCTAGCATACATCCC 59.447 57.143 18.24 6.43 37.24 3.85
2353 3914 2.839975 TCAACGCATTGTTACCTGTCA 58.160 42.857 0.00 0.00 39.29 3.58
2357 3918 4.699735 TGATGATTCAACGCATTGTTACCT 59.300 37.500 0.00 0.00 39.29 3.08
2359 3920 4.496895 GCTGATGATTCAACGCATTGTTAC 59.503 41.667 0.00 0.00 39.29 2.50
2360 3921 4.155644 TGCTGATGATTCAACGCATTGTTA 59.844 37.500 8.52 0.00 39.29 2.41
2380 3941 7.097834 GGTATACACTAGTGTCTTTTTCTGCT 58.902 38.462 31.11 5.64 43.74 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.