Multiple sequence alignment - TraesCS5B01G489600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G489600 chr5B 100.000 4353 0 0 784 5136 659415198 659419550 0.000000e+00 8039.0
1 TraesCS5B01G489600 chr5B 100.000 313 0 0 1 313 659414415 659414727 3.450000e-161 579.0
2 TraesCS5B01G489600 chr5B 81.048 248 30 11 4582 4820 592207140 592207379 1.140000e-41 182.0
3 TraesCS5B01G489600 chr5B 90.566 53 4 1 3723 3775 498780591 498780642 9.230000e-08 69.4
4 TraesCS5B01G489600 chr5B 100.000 30 0 0 284 313 659414660 659414689 7.180000e-04 56.5
5 TraesCS5B01G489600 chr5B 100.000 30 0 0 246 275 659414698 659414727 7.180000e-04 56.5
6 TraesCS5B01G489600 chr5D 94.160 2363 106 12 794 3140 524921959 524924305 0.000000e+00 3570.0
7 TraesCS5B01G489600 chr5D 92.687 1135 65 9 3773 4900 524924742 524925865 0.000000e+00 1620.0
8 TraesCS5B01G489600 chr5D 94.556 349 18 1 3379 3726 524924400 524924748 5.850000e-149 538.0
9 TraesCS5B01G489600 chr5D 78.316 784 129 27 1126 1890 321903553 321902792 7.790000e-128 468.0
10 TraesCS5B01G489600 chr5D 93.333 165 11 0 3212 3376 255344585 255344421 1.430000e-60 244.0
11 TraesCS5B01G489600 chr5D 91.667 120 8 2 4819 4938 524926299 524926416 1.140000e-36 165.0
12 TraesCS5B01G489600 chr5D 92.593 81 6 0 4820 4900 524926209 524926289 3.250000e-22 117.0
13 TraesCS5B01G489600 chr5D 81.944 144 15 2 5004 5136 524926403 524926546 1.510000e-20 111.0
14 TraesCS5B01G489600 chr5D 92.188 64 5 0 4818 4881 524926148 524926211 1.970000e-14 91.6
15 TraesCS5B01G489600 chr5D 84.416 77 10 1 5010 5086 268940412 268940486 1.980000e-09 75.0
16 TraesCS5B01G489600 chr5D 97.297 37 0 1 3140 3176 524924336 524924371 1.540000e-05 62.1
17 TraesCS5B01G489600 chr5A 94.906 2179 90 11 888 3059 651446833 651448997 0.000000e+00 3389.0
18 TraesCS5B01G489600 chr5A 84.743 544 42 5 3868 4410 651449808 651450311 1.650000e-139 507.0
19 TraesCS5B01G489600 chr5A 78.161 783 132 26 1126 1890 417051528 417050767 3.620000e-126 462.0
20 TraesCS5B01G489600 chr5A 90.000 350 33 2 3378 3726 651449426 651449774 7.840000e-123 451.0
21 TraesCS5B01G489600 chr5A 80.887 293 40 4 1 277 651446449 651446741 3.110000e-52 217.0
22 TraesCS5B01G489600 chr5A 95.000 40 1 1 3137 3176 651449360 651449398 1.540000e-05 62.1
23 TraesCS5B01G489600 chr5A 100.000 28 0 0 286 313 651446712 651446739 9.000000e-03 52.8
24 TraesCS5B01G489600 chr3B 92.365 799 45 6 1511 2299 455127538 455128330 0.000000e+00 1123.0
25 TraesCS5B01G489600 chr3B 93.939 165 10 0 3212 3376 388103350 388103514 3.070000e-62 250.0
26 TraesCS5B01G489600 chr3B 91.429 70 6 0 4865 4934 147162403 147162472 4.230000e-16 97.1
27 TraesCS5B01G489600 chr3A 92.219 694 39 10 1609 2299 743490720 743490039 0.000000e+00 968.0
28 TraesCS5B01G489600 chr4B 91.655 695 42 11 1609 2299 80004115 80004797 0.000000e+00 948.0
29 TraesCS5B01G489600 chr4B 89.286 168 18 0 3212 3379 624894988 624894821 1.450000e-50 211.0
30 TraesCS5B01G489600 chr3D 96.319 163 6 0 3214 3376 614670384 614670546 8.480000e-68 268.0
31 TraesCS5B01G489600 chr3D 93.413 167 11 0 3212 3378 591859660 591859494 1.100000e-61 248.0
32 TraesCS5B01G489600 chr3D 86.517 89 12 0 5007 5095 30072895 30072983 1.180000e-16 99.0
33 TraesCS5B01G489600 chr3D 85.870 92 13 0 5004 5095 339180282 339180373 1.180000e-16 99.0
34 TraesCS5B01G489600 chr3D 87.500 80 10 0 4858 4937 610529840 610529761 5.480000e-15 93.5
35 TraesCS5B01G489600 chrUn 85.657 251 32 4 4574 4822 95019134 95019382 1.420000e-65 261.0
36 TraesCS5B01G489600 chrUn 89.773 88 9 0 5008 5095 963370 963283 4.200000e-21 113.0
37 TraesCS5B01G489600 chr2D 93.333 165 11 0 3212 3376 101886545 101886709 1.430000e-60 244.0
38 TraesCS5B01G489600 chr2D 91.176 68 6 0 5020 5087 373438437 373438504 5.480000e-15 93.5
39 TraesCS5B01G489600 chr2D 81.250 80 14 1 3500 3578 57145525 57145446 4.290000e-06 63.9
40 TraesCS5B01G489600 chr1D 93.333 165 11 0 3212 3376 29806219 29806055 1.430000e-60 244.0
41 TraesCS5B01G489600 chr1D 91.515 165 14 0 3212 3376 170634389 170634553 1.440000e-55 228.0
42 TraesCS5B01G489600 chr1D 89.333 75 8 0 4863 4937 406846199 406846125 1.520000e-15 95.3
43 TraesCS5B01G489600 chr7D 92.727 165 12 0 3212 3376 595720279 595720443 6.650000e-59 239.0
44 TraesCS5B01G489600 chr2B 88.889 90 9 1 4731 4819 733469858 733469769 5.440000e-20 110.0
45 TraesCS5B01G489600 chr2B 89.610 77 5 3 4861 4934 57912593 57912669 1.520000e-15 95.3
46 TraesCS5B01G489600 chr7A 91.549 71 6 0 4864 4934 158344030 158344100 1.180000e-16 99.0
47 TraesCS5B01G489600 chr7A 89.655 58 5 1 3719 3776 653547338 653547394 7.130000e-09 73.1
48 TraesCS5B01G489600 chr6B 92.754 69 3 2 4867 4934 348358847 348358914 1.180000e-16 99.0
49 TraesCS5B01G489600 chr6B 97.778 45 1 0 3725 3769 412369646 412369602 1.530000e-10 78.7
50 TraesCS5B01G489600 chr6B 88.136 59 2 4 3722 3776 440555312 440555255 1.190000e-06 65.8
51 TraesCS5B01G489600 chr7B 91.429 70 6 0 4867 4936 701010478 701010409 4.230000e-16 97.1
52 TraesCS5B01G489600 chr6A 86.364 88 12 0 5008 5095 51895200 51895287 4.230000e-16 97.1
53 TraesCS5B01G489600 chr6A 84.507 71 10 1 168 238 143499009 143499078 9.230000e-08 69.4
54 TraesCS5B01G489600 chr2A 88.462 78 9 0 5018 5095 504722547 504722624 1.520000e-15 95.3
55 TraesCS5B01G489600 chr2A 83.333 78 12 1 3500 3576 58383855 58383778 2.570000e-08 71.3
56 TraesCS5B01G489600 chr1B 91.667 48 4 0 5044 5091 315354939 315354986 3.320000e-07 67.6
57 TraesCS5B01G489600 chr1A 86.667 60 5 2 182 238 574503343 574503284 4.290000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G489600 chr5B 659414415 659419550 5135 False 2182.750000 8039 100.000000 1 5136 4 chr5B.!!$F3 5135
1 TraesCS5B01G489600 chr5D 524921959 524926546 4587 False 784.337500 3570 92.136500 794 5136 8 chr5D.!!$F2 4342
2 TraesCS5B01G489600 chr5D 321902792 321903553 761 True 468.000000 468 78.316000 1126 1890 1 chr5D.!!$R2 764
3 TraesCS5B01G489600 chr5A 651446449 651450311 3862 False 779.816667 3389 90.922667 1 4410 6 chr5A.!!$F1 4409
4 TraesCS5B01G489600 chr5A 417050767 417051528 761 True 462.000000 462 78.161000 1126 1890 1 chr5A.!!$R1 764
5 TraesCS5B01G489600 chr3B 455127538 455128330 792 False 1123.000000 1123 92.365000 1511 2299 1 chr3B.!!$F3 788
6 TraesCS5B01G489600 chr3A 743490039 743490720 681 True 968.000000 968 92.219000 1609 2299 1 chr3A.!!$R1 690
7 TraesCS5B01G489600 chr4B 80004115 80004797 682 False 948.000000 948 91.655000 1609 2299 1 chr4B.!!$F1 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.252696 TCCTGGGCAGTCACCTACAT 60.253 55.0 0.00 0.0 0.00 2.29 F
939 957 0.463833 CCCGCCTCAAATACCCAGAC 60.464 60.0 0.00 0.0 0.00 3.51 F
2797 2849 1.686325 TTAAGCGCTAGCCCCTGAGG 61.686 60.0 12.05 0.0 46.67 3.86 F
3311 3655 0.037697 ACAACGTCTCGCCAATAGCA 60.038 50.0 0.00 0.0 44.04 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 1971 0.784778 GTCACGGTCGAAAAGCAGAG 59.215 55.000 0.00 0.00 0.00 3.35 R
2865 2917 1.875963 CGTTGAGCGGAGGCAAAAT 59.124 52.632 0.00 0.00 43.41 1.82 R
3769 4114 0.034670 AGCTCCCCTCAACATTCTGC 60.035 55.000 0.00 0.00 0.00 4.26 R
4933 5711 0.176680 ATCTCGAGCGGCTCACATTT 59.823 50.000 27.83 7.15 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.674359 TCTCGGAAAAGTTGCAAGCA 58.326 45.000 0.00 0.00 0.00 3.91
53 54 8.912112 CAACGGTTGCTTGAAATTTTATTTAC 57.088 30.769 8.09 0.00 0.00 2.01
56 57 8.138712 ACGGTTGCTTGAAATTTTATTTACTGA 58.861 29.630 0.00 0.00 0.00 3.41
71 72 6.743575 ATTTACTGAAGAAATCGTCAAGGG 57.256 37.500 0.95 0.00 34.18 3.95
72 73 3.771577 ACTGAAGAAATCGTCAAGGGT 57.228 42.857 0.95 0.00 34.18 4.34
73 74 4.086706 ACTGAAGAAATCGTCAAGGGTT 57.913 40.909 0.95 0.00 34.18 4.11
86 87 4.450080 CGTCAAGGGTTAAGTTGTTAGGTC 59.550 45.833 0.00 0.00 0.00 3.85
94 95 7.017850 AGGGTTAAGTTGTTAGGTCCAAGAATA 59.982 37.037 0.00 0.00 0.00 1.75
108 109 7.556275 AGGTCCAAGAATAAATATCAAAGCGAA 59.444 33.333 0.00 0.00 0.00 4.70
128 129 6.146021 AGCGAACATTTGATCAAACAAATTCC 59.854 34.615 22.71 15.11 44.63 3.01
131 132 7.359431 CGAACATTTGATCAAACAAATTCCTGG 60.359 37.037 22.71 8.19 44.63 4.45
134 135 3.237746 TGATCAAACAAATTCCTGGGCA 58.762 40.909 0.00 0.00 0.00 5.36
143 144 0.912486 ATTCCTGGGCAGTCACCTAC 59.088 55.000 0.00 0.00 0.00 3.18
145 146 0.252696 TCCTGGGCAGTCACCTACAT 60.253 55.000 0.00 0.00 0.00 2.29
146 147 0.620556 CCTGGGCAGTCACCTACATT 59.379 55.000 0.00 0.00 0.00 2.71
147 148 1.004745 CCTGGGCAGTCACCTACATTT 59.995 52.381 0.00 0.00 0.00 2.32
148 149 2.555227 CCTGGGCAGTCACCTACATTTT 60.555 50.000 0.00 0.00 0.00 1.82
149 150 2.749621 CTGGGCAGTCACCTACATTTTC 59.250 50.000 0.00 0.00 0.00 2.29
151 152 3.153919 GGGCAGTCACCTACATTTTCAA 58.846 45.455 0.00 0.00 0.00 2.69
154 166 5.222631 GGCAGTCACCTACATTTTCAAAAG 58.777 41.667 0.00 0.00 0.00 2.27
155 167 5.222631 GCAGTCACCTACATTTTCAAAAGG 58.777 41.667 0.00 0.00 0.00 3.11
158 170 7.661040 CAGTCACCTACATTTTCAAAAGGAAT 58.339 34.615 0.60 0.00 34.91 3.01
160 172 8.793592 AGTCACCTACATTTTCAAAAGGAATAC 58.206 33.333 0.60 0.00 34.91 1.89
162 174 9.010029 TCACCTACATTTTCAAAAGGAATACTC 57.990 33.333 0.60 0.00 34.91 2.59
213 230 1.566298 AACCCCTGGTCTCTGCATCC 61.566 60.000 0.00 0.00 33.12 3.51
214 231 1.997311 CCCCTGGTCTCTGCATCCA 60.997 63.158 0.00 0.00 0.00 3.41
239 256 7.172868 AGGATGCACACAATCATTTTTATCA 57.827 32.000 0.00 0.00 0.00 2.15
246 263 6.588756 CACACAATCATTTTTATCAGCTTGCT 59.411 34.615 0.00 0.00 0.00 3.91
284 301 6.877611 AACCACGTTTGAGAATTATCAACT 57.122 33.333 14.84 0.00 38.87 3.16
285 302 6.241207 ACCACGTTTGAGAATTATCAACTG 57.759 37.500 14.84 12.26 38.87 3.16
286 303 5.995282 ACCACGTTTGAGAATTATCAACTGA 59.005 36.000 14.84 0.00 38.87 3.41
288 305 6.797033 CCACGTTTGAGAATTATCAACTGAAC 59.203 38.462 14.84 9.61 38.87 3.18
289 306 7.351981 CACGTTTGAGAATTATCAACTGAACA 58.648 34.615 14.84 0.00 38.87 3.18
290 307 7.855409 CACGTTTGAGAATTATCAACTGAACAA 59.145 33.333 14.84 0.00 38.87 2.83
291 308 8.402472 ACGTTTGAGAATTATCAACTGAACAAA 58.598 29.630 14.84 0.00 38.87 2.83
304 321 9.744468 ATCAACTGAACAAAAGTATAAAACCAC 57.256 29.630 0.00 0.00 0.00 4.16
306 323 7.324354 ACTGAACAAAAGTATAAAACCACGT 57.676 32.000 0.00 0.00 0.00 4.49
307 324 7.764331 ACTGAACAAAAGTATAAAACCACGTT 58.236 30.769 0.00 0.00 0.00 3.99
308 325 8.245491 ACTGAACAAAAGTATAAAACCACGTTT 58.755 29.630 0.00 0.00 37.34 3.60
309 326 8.395940 TGAACAAAAGTATAAAACCACGTTTG 57.604 30.769 10.24 10.24 44.45 2.93
310 327 8.242053 TGAACAAAAGTATAAAACCACGTTTGA 58.758 29.630 16.25 0.00 42.79 2.69
825 842 1.814394 TCTGATGCTGTTCAATGGCAC 59.186 47.619 0.00 0.00 38.83 5.01
841 858 2.292016 TGGCACTTTGTACCATTGTTCG 59.708 45.455 0.00 0.00 0.00 3.95
868 885 1.608590 AGGCATTTGGTCGAACACAAG 59.391 47.619 0.44 0.00 0.00 3.16
869 886 1.336755 GGCATTTGGTCGAACACAAGT 59.663 47.619 0.44 0.00 0.00 3.16
874 891 0.742505 TGGTCGAACACAAGTCGAGT 59.257 50.000 0.00 0.00 36.53 4.18
875 892 1.129326 GGTCGAACACAAGTCGAGTG 58.871 55.000 0.00 0.00 42.56 3.51
876 893 0.503117 GTCGAACACAAGTCGAGTGC 59.497 55.000 3.39 0.00 40.59 4.40
878 895 0.874175 CGAACACAAGTCGAGTGCCA 60.874 55.000 3.39 0.00 40.59 4.92
899 917 3.661648 ATGCCAAACTCCGCCCCT 61.662 61.111 0.00 0.00 0.00 4.79
937 955 1.152963 CCCCGCCTCAAATACCCAG 60.153 63.158 0.00 0.00 0.00 4.45
939 957 0.463833 CCCGCCTCAAATACCCAGAC 60.464 60.000 0.00 0.00 0.00 3.51
960 978 2.158130 AACCAAACCCCGCTACCCT 61.158 57.895 0.00 0.00 0.00 4.34
961 979 2.133359 AACCAAACCCCGCTACCCTC 62.133 60.000 0.00 0.00 0.00 4.30
964 982 1.993948 AAACCCCGCTACCCTCCTC 60.994 63.158 0.00 0.00 0.00 3.71
965 983 4.835891 ACCCCGCTACCCTCCTCG 62.836 72.222 0.00 0.00 0.00 4.63
1455 1475 4.120755 CAGGCCCCTGCTCCTTCC 62.121 72.222 0.00 0.00 37.24 3.46
1711 1753 3.730761 CTGTGGCCGCAGCTTCAC 61.731 66.667 32.12 5.96 39.73 3.18
1972 2015 2.762327 GTGGTGATGGCTGGATTGATTT 59.238 45.455 0.00 0.00 0.00 2.17
2083 2126 2.750657 GCTAGCTGCAGGGATGGGT 61.751 63.158 17.12 0.00 42.31 4.51
2106 2149 4.051922 CGAGCTTCACTTACAACAGTTCT 58.948 43.478 0.00 0.00 0.00 3.01
2196 2239 3.067833 GGTAAGAACAAGTGACCTCTGC 58.932 50.000 0.00 0.00 0.00 4.26
2608 2659 7.750947 AATTTCTAGGTGTTGGTAGAGGTAT 57.249 36.000 0.00 0.00 0.00 2.73
2767 2818 9.113838 GATGGTGAGTTGTCTTTCACATATTAT 57.886 33.333 6.91 0.00 44.23 1.28
2768 2819 8.267620 TGGTGAGTTGTCTTTCACATATTATG 57.732 34.615 2.03 2.03 44.23 1.90
2773 2824 8.511604 AGTTGTCTTTCACATATTATGAAGGG 57.488 34.615 10.62 0.00 37.38 3.95
2797 2849 1.686325 TTAAGCGCTAGCCCCTGAGG 61.686 60.000 12.05 0.00 46.67 3.86
2798 2850 2.873557 TAAGCGCTAGCCCCTGAGGT 62.874 60.000 12.05 0.00 46.67 3.85
2865 2917 1.167851 GTGCAATGAAGTGCTAGGCA 58.832 50.000 4.24 0.00 45.17 4.75
2894 2946 0.454600 CGCTCAACGCCTAGGAACTA 59.545 55.000 14.75 0.00 35.67 2.24
2937 2989 1.332375 GTGCTTGTGTTCACGCCTAAA 59.668 47.619 0.00 0.00 37.92 1.85
2946 2998 6.276847 TGTGTTCACGCCTAAATTTTCAATT 58.723 32.000 0.00 0.00 0.00 2.32
3007 3059 2.055042 CGAGCCACCAGAGCTAGGT 61.055 63.158 4.53 4.53 41.75 3.08
3112 3172 2.568979 AGTAAGCCTAATTGGGACCCA 58.431 47.619 9.95 9.95 36.00 4.51
3114 3174 0.335019 AAGCCTAATTGGGACCCACC 59.665 55.000 14.59 0.00 36.00 4.61
3140 3200 9.173021 CGCATAGGATTAATTATTCCCACAATA 57.827 33.333 18.58 8.17 32.05 1.90
3176 3520 5.572126 CACTGTTTAGCTAAAGACCGAGTAC 59.428 44.000 19.16 5.75 0.00 2.73
3177 3521 5.242393 ACTGTTTAGCTAAAGACCGAGTACA 59.758 40.000 19.16 9.93 0.00 2.90
3178 3522 6.088016 TGTTTAGCTAAAGACCGAGTACAA 57.912 37.500 19.16 0.00 0.00 2.41
3179 3523 6.154445 TGTTTAGCTAAAGACCGAGTACAAG 58.846 40.000 19.16 0.00 0.00 3.16
3180 3524 3.870633 AGCTAAAGACCGAGTACAAGG 57.129 47.619 5.24 5.24 0.00 3.61
3181 3525 3.163467 AGCTAAAGACCGAGTACAAGGT 58.837 45.455 11.42 11.42 44.64 3.50
3185 3529 3.992636 GACCGAGTACAAGGTCGAG 57.007 57.895 19.46 6.60 46.08 4.04
3186 3530 1.163554 GACCGAGTACAAGGTCGAGT 58.836 55.000 19.46 9.14 46.08 4.18
3187 3531 2.350522 GACCGAGTACAAGGTCGAGTA 58.649 52.381 19.46 0.00 46.08 2.59
3200 3544 1.984297 GTCGAGTAAGAAACCTGTCGC 59.016 52.381 0.00 0.00 0.00 5.19
3204 3548 3.731264 CGAGTAAGAAACCTGTCGCCTAG 60.731 52.174 0.00 0.00 0.00 3.02
3205 3549 3.163467 AGTAAGAAACCTGTCGCCTAGT 58.837 45.455 0.00 0.00 0.00 2.57
3206 3550 2.745515 AAGAAACCTGTCGCCTAGTC 57.254 50.000 0.00 0.00 0.00 2.59
3208 3552 1.819903 AGAAACCTGTCGCCTAGTCTC 59.180 52.381 0.00 0.00 0.00 3.36
3209 3553 1.544691 GAAACCTGTCGCCTAGTCTCA 59.455 52.381 0.00 0.00 0.00 3.27
3210 3554 1.853963 AACCTGTCGCCTAGTCTCAT 58.146 50.000 0.00 0.00 0.00 2.90
3211 3555 2.730934 ACCTGTCGCCTAGTCTCATA 57.269 50.000 0.00 0.00 0.00 2.15
3214 3558 2.292016 CCTGTCGCCTAGTCTCATACTG 59.708 54.545 0.00 0.00 39.39 2.74
3215 3559 3.206964 CTGTCGCCTAGTCTCATACTGA 58.793 50.000 0.00 0.00 39.39 3.41
3216 3560 3.617284 TGTCGCCTAGTCTCATACTGAA 58.383 45.455 0.00 0.00 39.39 3.02
3217 3561 4.014406 TGTCGCCTAGTCTCATACTGAAA 58.986 43.478 0.00 0.00 39.39 2.69
3218 3562 4.461431 TGTCGCCTAGTCTCATACTGAAAA 59.539 41.667 0.00 0.00 39.39 2.29
3219 3563 5.047590 TGTCGCCTAGTCTCATACTGAAAAA 60.048 40.000 0.00 0.00 39.39 1.94
3248 3592 3.132629 GCTATAGCGTCGCTAATAGCA 57.867 47.619 34.13 19.54 44.62 3.49
3249 3593 2.847133 GCTATAGCGTCGCTAATAGCAC 59.153 50.000 34.13 20.55 44.62 4.40
3250 3594 1.965083 ATAGCGTCGCTAATAGCACG 58.035 50.000 29.13 22.97 44.62 5.34
3252 3596 4.303853 CGTCGCTAATAGCACGCT 57.696 55.556 18.51 0.00 42.58 5.07
3253 3597 3.449789 CGTCGCTAATAGCACGCTA 57.550 52.632 18.51 0.39 42.58 4.26
3254 3598 1.965083 CGTCGCTAATAGCACGCTAT 58.035 50.000 18.51 5.72 42.58 2.97
3255 3599 3.113325 CGTCGCTAATAGCACGCTATA 57.887 47.619 18.51 1.16 42.58 1.31
3256 3600 3.092135 CGTCGCTAATAGCACGCTATAG 58.908 50.000 18.51 10.32 42.58 1.31
3257 3601 2.847133 GTCGCTAATAGCACGCTATAGC 59.153 50.000 15.09 15.09 42.58 2.97
3297 3641 9.442033 TCTCGTTAAATATATCAGTGTACAACG 57.558 33.333 0.00 0.00 37.10 4.10
3298 3642 9.229784 CTCGTTAAATATATCAGTGTACAACGT 57.770 33.333 0.00 0.00 37.08 3.99
3299 3643 9.225201 TCGTTAAATATATCAGTGTACAACGTC 57.775 33.333 0.00 0.00 37.08 4.34
3300 3644 9.229784 CGTTAAATATATCAGTGTACAACGTCT 57.770 33.333 0.00 0.00 32.65 4.18
3302 3646 7.909777 AAATATATCAGTGTACAACGTCTCG 57.090 36.000 0.00 0.00 0.00 4.04
3303 3647 1.978542 ATCAGTGTACAACGTCTCGC 58.021 50.000 0.00 0.00 0.00 5.03
3304 3648 0.039798 TCAGTGTACAACGTCTCGCC 60.040 55.000 0.00 0.00 0.00 5.54
3305 3649 0.318360 CAGTGTACAACGTCTCGCCA 60.318 55.000 0.00 0.00 0.00 5.69
3306 3650 0.386476 AGTGTACAACGTCTCGCCAA 59.614 50.000 0.00 0.00 0.00 4.52
3307 3651 1.000506 AGTGTACAACGTCTCGCCAAT 59.999 47.619 0.00 0.00 0.00 3.16
3308 3652 2.229543 AGTGTACAACGTCTCGCCAATA 59.770 45.455 0.00 0.00 0.00 1.90
3309 3653 2.597305 GTGTACAACGTCTCGCCAATAG 59.403 50.000 0.00 0.00 0.00 1.73
3310 3654 1.587034 GTACAACGTCTCGCCAATAGC 59.413 52.381 0.00 0.00 38.52 2.97
3311 3655 0.037697 ACAACGTCTCGCCAATAGCA 60.038 50.000 0.00 0.00 44.04 3.49
3312 3656 0.370273 CAACGTCTCGCCAATAGCAC 59.630 55.000 0.00 0.00 44.04 4.40
3313 3657 1.076533 AACGTCTCGCCAATAGCACG 61.077 55.000 0.00 0.00 44.04 5.34
3314 3658 2.860628 CGTCTCGCCAATAGCACGC 61.861 63.158 0.00 0.00 44.04 5.34
3315 3659 1.519455 GTCTCGCCAATAGCACGCT 60.519 57.895 0.00 0.00 44.04 5.07
3316 3660 0.248907 GTCTCGCCAATAGCACGCTA 60.249 55.000 0.39 0.39 44.04 4.26
3317 3661 0.673985 TCTCGCCAATAGCACGCTAT 59.326 50.000 5.72 5.72 44.04 2.97
3318 3662 1.883926 TCTCGCCAATAGCACGCTATA 59.116 47.619 11.80 0.00 44.04 1.31
3319 3663 2.095212 TCTCGCCAATAGCACGCTATAG 60.095 50.000 11.80 8.03 44.04 1.31
3320 3664 0.716108 CGCCAATAGCACGCTATAGC 59.284 55.000 15.09 15.09 44.04 2.97
3321 3665 1.795768 GCCAATAGCACGCTATAGCA 58.204 50.000 23.99 4.83 42.97 3.49
3322 3666 1.461127 GCCAATAGCACGCTATAGCAC 59.539 52.381 23.99 12.65 42.97 4.40
3323 3667 1.721389 CCAATAGCACGCTATAGCACG 59.279 52.381 23.99 14.72 42.21 5.34
3324 3668 1.125021 CAATAGCACGCTATAGCACGC 59.875 52.381 23.99 22.83 42.21 5.34
3325 3669 0.598562 ATAGCACGCTATAGCACGCT 59.401 50.000 30.02 30.02 45.99 5.07
3326 3670 1.232119 TAGCACGCTATAGCACGCTA 58.768 50.000 28.42 28.42 43.56 4.26
3327 3671 0.384309 AGCACGCTATAGCACGCTAA 59.616 50.000 27.72 0.00 43.56 3.09
3328 3672 1.000163 AGCACGCTATAGCACGCTAAT 60.000 47.619 27.72 11.41 43.56 1.73
3329 3673 2.228103 AGCACGCTATAGCACGCTAATA 59.772 45.455 27.72 0.00 43.56 0.98
3330 3674 2.594654 GCACGCTATAGCACGCTAATAG 59.405 50.000 23.99 7.18 42.21 1.73
3331 3675 2.594654 CACGCTATAGCACGCTAATAGC 59.405 50.000 23.99 19.62 42.21 2.97
3345 3689 5.251999 GCTAATAGCGTATTTTGAGGTCG 57.748 43.478 0.00 0.00 0.00 4.79
3346 3690 4.150098 GCTAATAGCGTATTTTGAGGTCGG 59.850 45.833 0.00 0.00 0.00 4.79
3347 3691 1.930567 TAGCGTATTTTGAGGTCGGC 58.069 50.000 0.00 0.00 0.00 5.54
3348 3692 1.082117 AGCGTATTTTGAGGTCGGCG 61.082 55.000 0.00 0.00 0.00 6.46
3349 3693 1.347221 CGTATTTTGAGGTCGGCGC 59.653 57.895 0.00 0.00 0.00 6.53
3350 3694 1.082117 CGTATTTTGAGGTCGGCGCT 61.082 55.000 7.64 0.00 0.00 5.92
3351 3695 1.799917 CGTATTTTGAGGTCGGCGCTA 60.800 52.381 7.64 0.00 0.00 4.26
3352 3696 2.480845 GTATTTTGAGGTCGGCGCTAT 58.519 47.619 7.64 0.00 0.00 2.97
3353 3697 2.038387 ATTTTGAGGTCGGCGCTATT 57.962 45.000 7.64 0.00 0.00 1.73
3354 3698 1.816074 TTTTGAGGTCGGCGCTATTT 58.184 45.000 7.64 0.00 0.00 1.40
3355 3699 1.816074 TTTGAGGTCGGCGCTATTTT 58.184 45.000 7.64 0.00 0.00 1.82
3356 3700 1.083489 TTGAGGTCGGCGCTATTTTG 58.917 50.000 7.64 0.00 0.00 2.44
3357 3701 1.352056 GAGGTCGGCGCTATTTTGC 59.648 57.895 7.64 0.00 0.00 3.68
3358 3702 1.078426 AGGTCGGCGCTATTTTGCT 60.078 52.632 7.64 0.00 0.00 3.91
3359 3703 1.062525 GGTCGGCGCTATTTTGCTG 59.937 57.895 7.64 0.00 38.85 4.41
3360 3704 1.644786 GGTCGGCGCTATTTTGCTGT 61.645 55.000 7.64 0.00 38.61 4.40
3361 3705 1.003851 GTCGGCGCTATTTTGCTGTA 58.996 50.000 7.64 0.00 38.61 2.74
3362 3706 1.004927 GTCGGCGCTATTTTGCTGTAG 60.005 52.381 7.64 0.00 38.61 2.74
3363 3707 0.316196 CGGCGCTATTTTGCTGTAGC 60.316 55.000 7.64 0.00 39.86 3.58
3366 3710 3.133814 GCTATTTTGCTGTAGCGCG 57.866 52.632 0.00 0.00 45.83 6.86
3367 3711 0.925721 GCTATTTTGCTGTAGCGCGC 60.926 55.000 26.66 26.66 45.83 6.86
3368 3712 0.652592 CTATTTTGCTGTAGCGCGCT 59.347 50.000 38.01 38.01 45.83 5.92
3369 3713 1.858458 CTATTTTGCTGTAGCGCGCTA 59.142 47.619 35.48 35.48 45.83 4.26
3370 3714 1.299541 ATTTTGCTGTAGCGCGCTAT 58.700 45.000 39.99 22.30 45.83 2.97
3371 3715 1.083489 TTTTGCTGTAGCGCGCTATT 58.917 45.000 39.99 20.35 45.83 1.73
3372 3716 1.083489 TTTGCTGTAGCGCGCTATTT 58.917 45.000 39.99 19.95 45.83 1.40
3373 3717 1.083489 TTGCTGTAGCGCGCTATTTT 58.917 45.000 39.99 19.54 45.83 1.82
3374 3718 1.083489 TGCTGTAGCGCGCTATTTTT 58.917 45.000 39.99 18.75 45.83 1.94
3451 3795 8.162878 TGTCTAGGTAATCTTACTATTCACCG 57.837 38.462 0.52 0.00 34.16 4.94
3511 3855 3.899980 TGAGCTAGACATGATACCTGCAT 59.100 43.478 0.00 0.00 0.00 3.96
3519 3863 4.478843 CATGATACCTGCATGTTACTGC 57.521 45.455 0.00 1.01 42.62 4.40
3521 3865 2.167487 TGATACCTGCATGTTACTGCGA 59.833 45.455 0.00 0.00 45.30 5.10
3726 4071 4.343526 TGCATGGTTACAGGTTGAATGTTT 59.656 37.500 0.00 0.00 32.02 2.83
3727 4072 5.163364 TGCATGGTTACAGGTTGAATGTTTT 60.163 36.000 0.00 0.00 32.02 2.43
3728 4073 5.757808 GCATGGTTACAGGTTGAATGTTTTT 59.242 36.000 0.00 0.00 32.02 1.94
3766 4111 7.857569 GCAATTGCGTACCATAGTTTTATAGA 58.142 34.615 15.87 0.00 0.00 1.98
3767 4112 8.339714 GCAATTGCGTACCATAGTTTTATAGAA 58.660 33.333 15.87 0.00 0.00 2.10
3768 4113 9.864034 CAATTGCGTACCATAGTTTTATAGAAG 57.136 33.333 0.00 0.00 0.00 2.85
3769 4114 8.603242 ATTGCGTACCATAGTTTTATAGAAGG 57.397 34.615 0.00 0.00 0.00 3.46
3770 4115 5.987347 TGCGTACCATAGTTTTATAGAAGGC 59.013 40.000 0.00 0.00 0.00 4.35
3771 4116 5.987347 GCGTACCATAGTTTTATAGAAGGCA 59.013 40.000 0.00 0.00 0.00 4.75
3772 4117 6.145696 GCGTACCATAGTTTTATAGAAGGCAG 59.854 42.308 0.00 0.00 0.00 4.85
3773 4118 7.431249 CGTACCATAGTTTTATAGAAGGCAGA 58.569 38.462 0.00 0.00 0.00 4.26
3774 4119 7.924412 CGTACCATAGTTTTATAGAAGGCAGAA 59.076 37.037 0.00 0.00 0.00 3.02
3775 4120 9.780186 GTACCATAGTTTTATAGAAGGCAGAAT 57.220 33.333 0.00 0.00 0.00 2.40
3776 4121 8.682936 ACCATAGTTTTATAGAAGGCAGAATG 57.317 34.615 0.00 0.00 40.87 2.67
3777 4122 8.275040 ACCATAGTTTTATAGAAGGCAGAATGT 58.725 33.333 0.00 0.00 39.31 2.71
3778 4123 9.125026 CCATAGTTTTATAGAAGGCAGAATGTT 57.875 33.333 0.00 0.00 39.31 2.71
3779 4124 9.941664 CATAGTTTTATAGAAGGCAGAATGTTG 57.058 33.333 0.00 0.00 39.31 3.33
3780 4125 9.905713 ATAGTTTTATAGAAGGCAGAATGTTGA 57.094 29.630 0.00 0.00 39.31 3.18
3781 4126 8.273780 AGTTTTATAGAAGGCAGAATGTTGAG 57.726 34.615 0.00 0.00 39.31 3.02
3782 4127 7.337942 AGTTTTATAGAAGGCAGAATGTTGAGG 59.662 37.037 0.00 0.00 39.31 3.86
3783 4128 2.503895 AGAAGGCAGAATGTTGAGGG 57.496 50.000 0.00 0.00 39.31 4.30
3784 4129 1.005215 AGAAGGCAGAATGTTGAGGGG 59.995 52.381 0.00 0.00 39.31 4.79
3785 4130 1.004745 GAAGGCAGAATGTTGAGGGGA 59.995 52.381 0.00 0.00 39.31 4.81
3786 4131 0.622665 AGGCAGAATGTTGAGGGGAG 59.377 55.000 0.00 0.00 39.31 4.30
3787 4132 1.034292 GGCAGAATGTTGAGGGGAGC 61.034 60.000 0.00 0.00 39.31 4.70
3788 4133 0.034670 GCAGAATGTTGAGGGGAGCT 60.035 55.000 0.00 0.00 39.31 4.09
4042 4390 4.811555 TTTTCTTCAGGTCAATGTCACG 57.188 40.909 0.00 0.00 0.00 4.35
4078 4426 3.164268 TGTTTATGGTGCTGATTTGGCT 58.836 40.909 0.00 0.00 0.00 4.75
4139 4487 5.344743 TGAGAGCCTAACTTTGTAGGATG 57.655 43.478 2.38 0.00 40.00 3.51
4226 4574 7.096599 GCTGAGTTTGTTTTTCGTTTTCCTATC 60.097 37.037 0.00 0.00 0.00 2.08
4262 4610 1.428912 TCAAGGGGACATTGCTTTCCT 59.571 47.619 0.00 0.00 31.90 3.36
4287 4635 6.544197 TGCTGTTTGTACTATTTTCACTTGGA 59.456 34.615 0.00 0.00 0.00 3.53
4302 4650 5.428253 TCACTTGGAAATACTGGATACTGC 58.572 41.667 0.00 0.00 39.52 4.40
4382 4730 6.048732 TGTAGAATAGTTTGCAGTCCATCA 57.951 37.500 0.00 0.00 0.00 3.07
4417 4765 6.383147 AGTTCTTCGTATTCTGATTCCCCTTA 59.617 38.462 0.00 0.00 0.00 2.69
4481 4829 9.627123 TTTTCTGAGAGAAAAGAACCTGAATAA 57.373 29.630 7.29 0.00 45.99 1.40
4496 4844 6.122964 ACCTGAATAAGAATAAGCAAGGTCC 58.877 40.000 0.00 0.00 0.00 4.46
4505 4853 5.710567 AGAATAAGCAAGGTCCCAAACTTAC 59.289 40.000 0.00 0.00 0.00 2.34
4512 4860 2.374170 AGGTCCCAAACTTACATCCGTT 59.626 45.455 0.00 0.00 0.00 4.44
4519 4867 6.099990 TCCCAAACTTACATCCGTTATCCATA 59.900 38.462 0.00 0.00 0.00 2.74
4580 4928 2.764269 TCTGGCAATACTCCTAAGGCT 58.236 47.619 0.00 0.00 0.00 4.58
4582 4930 2.703007 CTGGCAATACTCCTAAGGCTCT 59.297 50.000 0.00 0.00 0.00 4.09
4586 4934 4.123506 GCAATACTCCTAAGGCTCTGTTC 58.876 47.826 0.00 0.00 0.00 3.18
4593 4941 2.289444 CCTAAGGCTCTGTTCGTTTGGA 60.289 50.000 0.00 0.00 0.00 3.53
4597 4945 1.947456 GGCTCTGTTCGTTTGGACTTT 59.053 47.619 0.00 0.00 0.00 2.66
4605 4953 4.636648 TGTTCGTTTGGACTTTTGCTTCTA 59.363 37.500 0.00 0.00 0.00 2.10
4614 4962 5.299279 TGGACTTTTGCTTCTACTTTTGGAG 59.701 40.000 0.00 0.00 0.00 3.86
4660 5011 5.105351 GCCAAAAATGCTCCTAAATAGGTGT 60.105 40.000 6.39 0.00 44.02 4.16
4661 5012 6.574269 GCCAAAAATGCTCCTAAATAGGTGTT 60.574 38.462 6.39 0.00 44.02 3.32
4690 5041 4.747810 CTTTGGCTTTTGGCTTATACCAG 58.252 43.478 0.00 0.00 46.20 4.00
4692 5043 2.099405 GGCTTTTGGCTTATACCAGCA 58.901 47.619 0.00 0.00 41.82 4.41
4693 5044 2.695147 GGCTTTTGGCTTATACCAGCAT 59.305 45.455 0.00 0.00 41.82 3.79
4722 5073 6.744082 GCAATATTGATTCAAAAGCCAAAAGC 59.256 34.615 19.73 0.00 44.25 3.51
4724 5075 4.420522 TTGATTCAAAAGCCAAAAGCCT 57.579 36.364 0.00 0.00 45.47 4.58
4733 5084 3.836365 AGCCAAAAGCCTAAGCAAAAA 57.164 38.095 0.00 0.00 45.47 1.94
4781 5134 4.693538 TTTTTGCCAAAGTGAAAAAGCC 57.306 36.364 0.00 0.00 0.00 4.35
4790 5143 1.134848 AGTGAAAAAGCCGCAAAAGCA 60.135 42.857 0.00 0.00 0.00 3.91
4791 5144 1.663135 GTGAAAAAGCCGCAAAAGCAA 59.337 42.857 0.00 0.00 0.00 3.91
4799 5152 1.202121 GCCGCAAAAGCAAAAGCAAAA 60.202 42.857 0.00 0.00 0.00 2.44
4800 5153 2.730402 GCCGCAAAAGCAAAAGCAAAAA 60.730 40.909 0.00 0.00 0.00 1.94
4807 5160 5.657826 AAAGCAAAAGCAAAAACCCAAAT 57.342 30.435 0.00 0.00 0.00 2.32
4808 5161 4.635833 AGCAAAAGCAAAAACCCAAATG 57.364 36.364 0.00 0.00 0.00 2.32
4814 5167 4.486125 AGCAAAAACCCAAATGAACAGT 57.514 36.364 0.00 0.00 0.00 3.55
4815 5168 4.190772 AGCAAAAACCCAAATGAACAGTG 58.809 39.130 0.00 0.00 0.00 3.66
4819 5172 2.969821 ACCCAAATGAACAGTGCCTA 57.030 45.000 0.00 0.00 0.00 3.93
4822 5175 4.159557 ACCCAAATGAACAGTGCCTAAAT 58.840 39.130 0.00 0.00 0.00 1.40
4824 5177 4.463891 CCCAAATGAACAGTGCCTAAATCT 59.536 41.667 0.00 0.00 0.00 2.40
4870 5648 0.764752 CCTAGGGGTTCTGCCTAGGG 60.765 65.000 11.72 0.00 45.50 3.53
4885 5663 2.165998 CTAGGGCTGCAAGAAAAGCTT 58.834 47.619 0.50 0.00 39.46 3.74
4909 5687 2.352915 CGTGAGCCGCTCGAGATC 60.353 66.667 18.75 8.44 35.64 2.75
4910 5688 2.352915 GTGAGCCGCTCGAGATCG 60.353 66.667 18.75 11.22 41.45 3.69
4912 5690 2.051703 GAGCCGCTCGAGATCGAC 60.052 66.667 18.75 3.34 44.22 4.20
4913 5691 2.515057 AGCCGCTCGAGATCGACT 60.515 61.111 18.75 5.99 44.22 4.18
4914 5692 2.054140 GAGCCGCTCGAGATCGACTT 62.054 60.000 18.75 0.10 44.22 3.01
4915 5693 1.941734 GCCGCTCGAGATCGACTTG 60.942 63.158 18.75 0.00 44.22 3.16
4916 5694 1.722082 CCGCTCGAGATCGACTTGA 59.278 57.895 18.75 0.00 44.22 3.02
4925 5703 4.082190 TCGAGATCGACTTGAGTTTTGGAT 60.082 41.667 0.00 0.00 44.22 3.41
4926 5704 4.627467 CGAGATCGACTTGAGTTTTGGATT 59.373 41.667 0.00 0.00 43.02 3.01
4927 5705 5.445142 CGAGATCGACTTGAGTTTTGGATTG 60.445 44.000 0.00 0.00 43.02 2.67
4929 5707 5.409826 AGATCGACTTGAGTTTTGGATTGAC 59.590 40.000 0.00 0.00 0.00 3.18
4931 5709 4.750098 TCGACTTGAGTTTTGGATTGACTC 59.250 41.667 0.00 0.00 40.09 3.36
4932 5710 4.376413 CGACTTGAGTTTTGGATTGACTCG 60.376 45.833 0.00 0.00 42.02 4.18
4933 5711 4.703897 ACTTGAGTTTTGGATTGACTCGA 58.296 39.130 0.00 0.00 42.02 4.04
4936 5714 6.263168 ACTTGAGTTTTGGATTGACTCGAAAT 59.737 34.615 0.00 0.00 42.02 2.17
4947 5771 0.737715 ACTCGAAATGTGAGCCGCTC 60.738 55.000 13.81 13.81 36.94 5.03
4953 5777 0.249238 AATGTGAGCCGCTCGAGATC 60.249 55.000 18.75 8.44 32.35 2.75
4967 5791 4.493220 GCTCGAGATCGACTTGAATTTTGG 60.493 45.833 18.75 0.00 44.22 3.28
4971 5795 5.961843 CGAGATCGACTTGAATTTTGGATTG 59.038 40.000 0.00 0.00 43.02 2.67
4988 5812 8.821147 TTTGGATTGACTTGAAATGAAATGAG 57.179 30.769 0.00 0.00 0.00 2.90
4993 5817 6.250344 TGACTTGAAATGAAATGAGCTGAG 57.750 37.500 0.00 0.00 0.00 3.35
4999 5823 7.926674 TGAAATGAAATGAGCTGAGTATGAA 57.073 32.000 0.00 0.00 0.00 2.57
5000 5824 7.755591 TGAAATGAAATGAGCTGAGTATGAAC 58.244 34.615 0.00 0.00 0.00 3.18
5001 5825 7.391275 TGAAATGAAATGAGCTGAGTATGAACA 59.609 33.333 0.00 0.00 0.00 3.18
5002 5826 6.674694 ATGAAATGAGCTGAGTATGAACAC 57.325 37.500 0.00 0.00 0.00 3.32
5003 5827 5.550290 TGAAATGAGCTGAGTATGAACACA 58.450 37.500 0.00 0.00 0.00 3.72
5004 5828 6.175471 TGAAATGAGCTGAGTATGAACACAT 58.825 36.000 0.00 0.00 0.00 3.21
5005 5829 6.656270 TGAAATGAGCTGAGTATGAACACATT 59.344 34.615 0.00 0.00 0.00 2.71
5006 5830 6.432607 AATGAGCTGAGTATGAACACATTG 57.567 37.500 0.00 0.00 0.00 2.82
5007 5831 5.151297 TGAGCTGAGTATGAACACATTGA 57.849 39.130 0.00 0.00 0.00 2.57
5008 5832 4.931601 TGAGCTGAGTATGAACACATTGAC 59.068 41.667 0.00 0.00 0.00 3.18
5009 5833 5.157940 AGCTGAGTATGAACACATTGACT 57.842 39.130 0.00 0.00 0.00 3.41
5010 5834 5.174395 AGCTGAGTATGAACACATTGACTC 58.826 41.667 0.00 0.00 33.63 3.36
5011 5835 4.032217 GCTGAGTATGAACACATTGACTCG 59.968 45.833 0.00 0.00 34.75 4.18
5012 5836 5.385509 TGAGTATGAACACATTGACTCGA 57.614 39.130 0.00 0.00 34.75 4.04
5013 5837 5.778862 TGAGTATGAACACATTGACTCGAA 58.221 37.500 0.00 0.00 34.75 3.71
5014 5838 6.220201 TGAGTATGAACACATTGACTCGAAA 58.780 36.000 0.00 0.00 34.75 3.46
5015 5839 6.873605 TGAGTATGAACACATTGACTCGAAAT 59.126 34.615 0.00 0.00 34.75 2.17
5016 5840 7.065216 AGTATGAACACATTGACTCGAAATG 57.935 36.000 6.74 6.74 40.23 2.32
5017 5841 6.873605 AGTATGAACACATTGACTCGAAATGA 59.126 34.615 13.80 0.00 38.21 2.57
5018 5842 6.558771 ATGAACACATTGACTCGAAATGAA 57.441 33.333 13.80 0.00 38.21 2.57
5019 5843 6.370433 TGAACACATTGACTCGAAATGAAA 57.630 33.333 13.80 0.00 38.21 2.69
5020 5844 6.969366 TGAACACATTGACTCGAAATGAAAT 58.031 32.000 13.80 1.30 38.21 2.17
5021 5845 6.857451 TGAACACATTGACTCGAAATGAAATG 59.143 34.615 13.80 9.07 38.21 2.32
5022 5846 6.558771 ACACATTGACTCGAAATGAAATGA 57.441 33.333 13.80 0.00 38.21 2.57
5023 5847 6.605849 ACACATTGACTCGAAATGAAATGAG 58.394 36.000 13.80 8.03 38.21 2.90
5024 5848 6.427853 ACACATTGACTCGAAATGAAATGAGA 59.572 34.615 13.80 0.00 38.21 3.27
5025 5849 7.120285 ACACATTGACTCGAAATGAAATGAGAT 59.880 33.333 13.80 0.00 38.21 2.75
5026 5850 7.428472 CACATTGACTCGAAATGAAATGAGATG 59.572 37.037 13.80 0.00 38.21 2.90
5027 5851 7.335171 ACATTGACTCGAAATGAAATGAGATGA 59.665 33.333 13.80 0.00 38.21 2.92
5028 5852 6.898912 TGACTCGAAATGAAATGAGATGAG 57.101 37.500 0.00 0.00 32.81 2.90
5029 5853 6.401394 TGACTCGAAATGAAATGAGATGAGT 58.599 36.000 0.00 0.00 36.91 3.41
5030 5854 7.547227 TGACTCGAAATGAAATGAGATGAGTA 58.453 34.615 0.00 0.00 34.57 2.59
5031 5855 8.200120 TGACTCGAAATGAAATGAGATGAGTAT 58.800 33.333 0.00 0.00 34.57 2.12
5032 5856 8.362860 ACTCGAAATGAAATGAGATGAGTATG 57.637 34.615 0.00 0.00 32.81 2.39
5033 5857 8.200120 ACTCGAAATGAAATGAGATGAGTATGA 58.800 33.333 0.00 0.00 32.81 2.15
5034 5858 8.947055 TCGAAATGAAATGAGATGAGTATGAA 57.053 30.769 0.00 0.00 0.00 2.57
5035 5859 8.820933 TCGAAATGAAATGAGATGAGTATGAAC 58.179 33.333 0.00 0.00 0.00 3.18
5049 5873 7.241042 TGAGTATGAACACTTTAGGTAGCTT 57.759 36.000 0.00 0.00 0.00 3.74
5053 5877 7.982354 AGTATGAACACTTTAGGTAGCTTGATC 59.018 37.037 0.00 0.00 0.00 2.92
5059 5883 6.100004 CACTTTAGGTAGCTTGATCGAGAAA 58.900 40.000 14.59 3.46 0.00 2.52
5092 5916 0.244994 AGCCAACACTAGCTCACTCG 59.755 55.000 0.00 0.00 32.71 4.18
5100 5935 2.875317 CACTAGCTCACTCGATAGCTCA 59.125 50.000 17.33 6.84 45.92 4.26
5103 5938 4.582656 ACTAGCTCACTCGATAGCTCAATT 59.417 41.667 17.33 0.95 45.92 2.32
5105 5940 5.521906 AGCTCACTCGATAGCTCAATTTA 57.478 39.130 10.36 0.00 45.92 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.222027 CAACTTTTCCGAGAAGCAGGT 58.778 47.619 0.00 0.00 0.00 4.00
13 14 0.845768 CGTTGCTTGCAACTTTTCCG 59.154 50.000 28.25 15.30 33.21 4.30
29 30 8.760569 CAGTAAATAAAATTTCAAGCAACCGTT 58.239 29.630 0.00 0.00 0.00 4.44
53 54 5.701290 ACTTAACCCTTGACGATTTCTTCAG 59.299 40.000 0.00 0.00 0.00 3.02
56 57 5.826208 ACAACTTAACCCTTGACGATTTCTT 59.174 36.000 0.00 0.00 0.00 2.52
64 65 4.758674 GGACCTAACAACTTAACCCTTGAC 59.241 45.833 0.00 0.00 0.00 3.18
69 70 4.976864 TCTTGGACCTAACAACTTAACCC 58.023 43.478 0.00 0.00 0.00 4.11
70 71 8.625786 TTATTCTTGGACCTAACAACTTAACC 57.374 34.615 0.00 0.00 0.00 2.85
86 87 9.520204 AATGTTCGCTTTGATATTTATTCTTGG 57.480 29.630 0.00 0.00 0.00 3.61
104 105 6.146021 AGGAATTTGTTTGATCAAATGTTCGC 59.854 34.615 23.05 10.22 44.10 4.70
108 109 6.232692 CCCAGGAATTTGTTTGATCAAATGT 58.767 36.000 23.05 7.75 44.10 2.71
119 120 1.963515 GTGACTGCCCAGGAATTTGTT 59.036 47.619 0.00 0.00 0.00 2.83
128 129 2.496899 AAATGTAGGTGACTGCCCAG 57.503 50.000 0.00 0.00 43.21 4.45
131 132 4.846779 TTTGAAAATGTAGGTGACTGCC 57.153 40.909 0.00 0.00 43.21 4.85
134 135 7.839680 ATTCCTTTTGAAAATGTAGGTGACT 57.160 32.000 0.00 0.00 39.77 3.41
200 217 1.211212 CATCCTTGGATGCAGAGACCA 59.789 52.381 15.65 0.00 0.00 4.02
213 230 7.546316 TGATAAAAATGATTGTGTGCATCCTTG 59.454 33.333 0.00 0.00 0.00 3.61
214 231 7.613585 TGATAAAAATGATTGTGTGCATCCTT 58.386 30.769 0.00 0.00 0.00 3.36
239 256 6.923508 GGTTTTATACTTTTGTTCAGCAAGCT 59.076 34.615 0.00 0.00 38.47 3.74
246 263 8.242053 TCAAACGTGGTTTTATACTTTTGTTCA 58.758 29.630 0.00 0.00 37.34 3.18
280 297 7.698970 ACGTGGTTTTATACTTTTGTTCAGTTG 59.301 33.333 0.00 0.00 0.00 3.16
282 299 7.324354 ACGTGGTTTTATACTTTTGTTCAGT 57.676 32.000 0.00 0.00 0.00 3.41
284 301 8.242053 TCAAACGTGGTTTTATACTTTTGTTCA 58.758 29.630 0.00 0.00 37.34 3.18
285 302 8.617761 TCAAACGTGGTTTTATACTTTTGTTC 57.382 30.769 0.00 0.00 37.34 3.18
286 303 8.460428 TCTCAAACGTGGTTTTATACTTTTGTT 58.540 29.630 0.00 0.00 37.34 2.83
868 885 3.503363 GCATGGCTGGCACTCGAC 61.503 66.667 5.88 0.00 0.00 4.20
869 886 4.783621 GGCATGGCTGGCACTCGA 62.784 66.667 12.86 0.00 46.77 4.04
876 893 2.703798 CGGAGTTTGGCATGGCTGG 61.704 63.158 21.08 0.00 0.00 4.85
878 895 3.064324 GCGGAGTTTGGCATGGCT 61.064 61.111 21.08 0.00 0.00 4.75
899 917 2.885861 GGAGAAAGCGAGGCGAGA 59.114 61.111 0.00 0.00 0.00 4.04
937 955 2.414658 TAGCGGGGTTTGGTTGGGTC 62.415 60.000 0.00 0.00 0.00 4.46
939 957 1.974875 GTAGCGGGGTTTGGTTGGG 60.975 63.158 0.00 0.00 0.00 4.12
1423 1443 2.670934 CTGCTGCTCGGGCTGTTT 60.671 61.111 16.06 0.00 39.19 2.83
1424 1444 4.711949 CCTGCTGCTCGGGCTGTT 62.712 66.667 16.06 0.00 39.19 3.16
1701 1743 1.021390 CCCTTACTGGTGAAGCTGCG 61.021 60.000 0.00 0.00 0.00 5.18
1928 1971 0.784778 GTCACGGTCGAAAAGCAGAG 59.215 55.000 0.00 0.00 0.00 3.35
1961 2004 8.306038 TGACCTGATAAAACAAAATCAATCCAG 58.694 33.333 0.00 0.00 31.97 3.86
1972 2015 5.221422 CCTTTGGCTTGACCTGATAAAACAA 60.221 40.000 0.00 0.00 40.22 2.83
2083 2126 3.728076 ACTGTTGTAAGTGAAGCTCGA 57.272 42.857 0.00 0.00 0.00 4.04
2106 2149 6.772605 AGATACAGCCACAGCAATATTGATA 58.227 36.000 19.73 0.00 43.56 2.15
2428 2475 8.347771 CAGGTAAGTACAATTTCCATGATCATG 58.652 37.037 25.97 25.97 38.51 3.07
2628 2679 5.886609 TCCACATTCAAATTCTTAGACCCA 58.113 37.500 0.00 0.00 0.00 4.51
2865 2917 1.875963 CGTTGAGCGGAGGCAAAAT 59.124 52.632 0.00 0.00 43.41 1.82
2878 2930 3.019564 GGTACTAGTTCCTAGGCGTTGA 58.980 50.000 11.11 0.00 38.30 3.18
2894 2946 3.527937 AGGTGTAAATGTCCCTGGTACT 58.472 45.455 0.00 0.00 0.00 2.73
2895 2947 3.994931 AGGTGTAAATGTCCCTGGTAC 57.005 47.619 0.00 0.00 0.00 3.34
2896 2948 3.653836 ACAAGGTGTAAATGTCCCTGGTA 59.346 43.478 0.00 0.00 29.20 3.25
2946 2998 7.360522 CCGCTTTAACACACACAAGTTATATGA 60.361 37.037 0.00 0.00 31.01 2.15
2968 3020 2.443416 GGGAAGAACCAATTTACCGCT 58.557 47.619 0.00 0.00 41.20 5.52
3036 3096 6.071108 ACACACTCTCTCAGCATTACTACATT 60.071 38.462 0.00 0.00 0.00 2.71
3109 3169 5.357032 GGAATAATTAATCCTATGCGGTGGG 59.643 44.000 11.72 0.00 32.75 4.61
3112 3172 5.944007 GTGGGAATAATTAATCCTATGCGGT 59.056 40.000 17.28 0.00 35.95 5.68
3114 3174 7.447374 TTGTGGGAATAATTAATCCTATGCG 57.553 36.000 17.28 0.00 35.95 4.73
3140 3200 6.607004 AGCTAAACAGTGAGGTATTGTAGT 57.393 37.500 0.00 0.00 0.00 2.73
3143 3203 7.603024 GTCTTTAGCTAAACAGTGAGGTATTGT 59.397 37.037 14.96 0.00 0.00 2.71
3144 3204 7.064728 GGTCTTTAGCTAAACAGTGAGGTATTG 59.935 40.741 14.96 1.36 0.00 1.90
3176 3520 3.988517 GACAGGTTTCTTACTCGACCTTG 59.011 47.826 0.00 0.00 40.42 3.61
3177 3521 3.305199 CGACAGGTTTCTTACTCGACCTT 60.305 47.826 0.00 0.00 40.42 3.50
3178 3522 2.228343 CGACAGGTTTCTTACTCGACCT 59.772 50.000 0.00 0.00 43.06 3.85
3179 3523 2.593257 CGACAGGTTTCTTACTCGACC 58.407 52.381 0.00 0.00 0.00 4.79
3180 3524 1.984297 GCGACAGGTTTCTTACTCGAC 59.016 52.381 0.00 0.00 0.00 4.20
3181 3525 1.068055 GGCGACAGGTTTCTTACTCGA 60.068 52.381 0.00 0.00 0.00 4.04
3182 3526 1.067776 AGGCGACAGGTTTCTTACTCG 60.068 52.381 0.00 0.00 0.00 4.18
3183 3527 2.745515 AGGCGACAGGTTTCTTACTC 57.254 50.000 0.00 0.00 0.00 2.59
3184 3528 3.163467 ACTAGGCGACAGGTTTCTTACT 58.837 45.455 0.00 0.00 0.00 2.24
3185 3529 3.193056 AGACTAGGCGACAGGTTTCTTAC 59.807 47.826 0.00 0.00 0.00 2.34
3186 3530 3.428532 AGACTAGGCGACAGGTTTCTTA 58.571 45.455 0.00 0.00 0.00 2.10
3187 3531 2.231721 GAGACTAGGCGACAGGTTTCTT 59.768 50.000 0.00 0.00 0.00 2.52
3228 3572 2.847133 GTGCTATTAGCGACGCTATAGC 59.153 50.000 34.54 34.54 46.26 2.97
3229 3573 3.092135 CGTGCTATTAGCGACGCTATAG 58.908 50.000 28.67 26.76 46.26 1.31
3230 3574 3.113325 CGTGCTATTAGCGACGCTATA 57.887 47.619 28.67 19.32 46.26 1.31
3231 3575 1.965083 CGTGCTATTAGCGACGCTAT 58.035 50.000 28.67 19.98 46.26 2.97
3232 3576 3.449789 CGTGCTATTAGCGACGCTA 57.550 52.632 25.04 25.04 46.26 4.26
3233 3577 4.303853 CGTGCTATTAGCGACGCT 57.696 55.556 27.45 27.45 46.26 5.07
3235 3579 1.965083 ATAGCGTGCTATTAGCGACG 58.035 50.000 23.96 23.96 46.26 5.12
3236 3580 2.847133 GCTATAGCGTGCTATTAGCGAC 59.153 50.000 18.62 9.06 46.26 5.19
3237 3581 3.132629 GCTATAGCGTGCTATTAGCGA 57.867 47.619 18.62 0.92 46.26 4.93
3250 3594 7.271936 GAGACAATTCTCAATACGCTATAGC 57.728 40.000 15.09 15.09 46.84 2.97
3271 3615 9.442033 CGTTGTACACTGATATATTTAACGAGA 57.558 33.333 0.00 0.00 39.36 4.04
3272 3616 9.229784 ACGTTGTACACTGATATATTTAACGAG 57.770 33.333 13.05 0.00 39.36 4.18
3273 3617 9.225201 GACGTTGTACACTGATATATTTAACGA 57.775 33.333 13.05 0.00 39.36 3.85
3274 3618 9.229784 AGACGTTGTACACTGATATATTTAACG 57.770 33.333 0.00 0.00 41.76 3.18
3276 3620 9.442033 CGAGACGTTGTACACTGATATATTTAA 57.558 33.333 0.00 0.00 0.00 1.52
3277 3621 7.588854 GCGAGACGTTGTACACTGATATATTTA 59.411 37.037 0.00 0.00 0.00 1.40
3278 3622 6.417044 GCGAGACGTTGTACACTGATATATTT 59.583 38.462 0.00 0.00 0.00 1.40
3279 3623 5.913514 GCGAGACGTTGTACACTGATATATT 59.086 40.000 0.00 0.00 0.00 1.28
3280 3624 5.450171 GCGAGACGTTGTACACTGATATAT 58.550 41.667 0.00 0.00 0.00 0.86
3281 3625 4.260907 GGCGAGACGTTGTACACTGATATA 60.261 45.833 0.00 0.00 0.00 0.86
3282 3626 3.488721 GGCGAGACGTTGTACACTGATAT 60.489 47.826 0.00 0.00 0.00 1.63
3283 3627 2.159476 GGCGAGACGTTGTACACTGATA 60.159 50.000 0.00 0.00 0.00 2.15
3284 3628 1.402456 GGCGAGACGTTGTACACTGAT 60.402 52.381 0.00 0.00 0.00 2.90
3285 3629 0.039798 GGCGAGACGTTGTACACTGA 60.040 55.000 0.00 0.00 0.00 3.41
3286 3630 0.318360 TGGCGAGACGTTGTACACTG 60.318 55.000 0.00 0.00 0.00 3.66
3287 3631 0.386476 TTGGCGAGACGTTGTACACT 59.614 50.000 0.00 0.00 0.00 3.55
3288 3632 1.425412 ATTGGCGAGACGTTGTACAC 58.575 50.000 0.00 0.00 0.00 2.90
3289 3633 2.871133 CTATTGGCGAGACGTTGTACA 58.129 47.619 0.00 0.00 0.00 2.90
3290 3634 1.587034 GCTATTGGCGAGACGTTGTAC 59.413 52.381 0.00 0.00 0.00 2.90
3291 3635 1.202817 TGCTATTGGCGAGACGTTGTA 59.797 47.619 0.00 0.00 45.43 2.41
3292 3636 0.037697 TGCTATTGGCGAGACGTTGT 60.038 50.000 0.00 0.00 45.43 3.32
3293 3637 0.370273 GTGCTATTGGCGAGACGTTG 59.630 55.000 0.00 0.00 45.43 4.10
3294 3638 1.076533 CGTGCTATTGGCGAGACGTT 61.077 55.000 0.00 0.00 45.43 3.99
3295 3639 1.516386 CGTGCTATTGGCGAGACGT 60.516 57.895 0.00 0.00 45.43 4.34
3296 3640 2.860628 GCGTGCTATTGGCGAGACG 61.861 63.158 0.00 0.00 45.43 4.18
3297 3641 0.248907 TAGCGTGCTATTGGCGAGAC 60.249 55.000 0.00 0.00 45.43 3.36
3298 3642 0.673985 ATAGCGTGCTATTGGCGAGA 59.326 50.000 8.54 0.00 45.43 4.04
3299 3643 2.254459 CTATAGCGTGCTATTGGCGAG 58.746 52.381 18.62 6.90 45.43 5.03
3300 3644 1.668919 GCTATAGCGTGCTATTGGCGA 60.669 52.381 18.62 0.92 45.43 5.54
3301 3645 0.716108 GCTATAGCGTGCTATTGGCG 59.284 55.000 18.62 7.48 45.43 5.69
3302 3646 1.461127 GTGCTATAGCGTGCTATTGGC 59.539 52.381 18.62 20.45 45.83 4.52
3303 3647 1.721389 CGTGCTATAGCGTGCTATTGG 59.279 52.381 18.62 12.99 45.83 3.16
3304 3648 1.125021 GCGTGCTATAGCGTGCTATTG 59.875 52.381 25.40 17.09 45.83 1.90
3305 3649 1.419374 GCGTGCTATAGCGTGCTATT 58.581 50.000 25.40 4.72 45.83 1.73
3306 3650 3.108521 GCGTGCTATAGCGTGCTAT 57.891 52.632 25.40 17.65 45.83 2.97
3307 3651 4.628160 GCGTGCTATAGCGTGCTA 57.372 55.556 25.40 3.73 45.83 3.49
3308 3652 2.808315 AGCGTGCTATAGCGTGCT 59.192 55.556 28.16 28.16 45.20 4.40
3309 3653 1.419374 ATTAGCGTGCTATAGCGTGC 58.581 50.000 25.35 25.35 45.83 5.34
3310 3654 2.594654 GCTATTAGCGTGCTATAGCGTG 59.405 50.000 19.55 14.81 45.83 5.34
3311 3655 2.864968 GCTATTAGCGTGCTATAGCGT 58.135 47.619 19.55 7.04 45.83 5.07
3323 3667 4.150098 CCGACCTCAAAATACGCTATTAGC 59.850 45.833 5.56 5.56 38.02 3.09
3324 3668 4.150098 GCCGACCTCAAAATACGCTATTAG 59.850 45.833 0.00 0.00 0.00 1.73
3325 3669 4.053295 GCCGACCTCAAAATACGCTATTA 58.947 43.478 0.00 0.00 0.00 0.98
3326 3670 2.870411 GCCGACCTCAAAATACGCTATT 59.130 45.455 0.00 0.00 0.00 1.73
3327 3671 2.480845 GCCGACCTCAAAATACGCTAT 58.519 47.619 0.00 0.00 0.00 2.97
3328 3672 1.799917 CGCCGACCTCAAAATACGCTA 60.800 52.381 0.00 0.00 0.00 4.26
3329 3673 1.082117 CGCCGACCTCAAAATACGCT 61.082 55.000 0.00 0.00 0.00 5.07
3330 3674 1.347221 CGCCGACCTCAAAATACGC 59.653 57.895 0.00 0.00 0.00 4.42
3331 3675 1.082117 AGCGCCGACCTCAAAATACG 61.082 55.000 2.29 0.00 0.00 3.06
3332 3676 1.930567 TAGCGCCGACCTCAAAATAC 58.069 50.000 2.29 0.00 0.00 1.89
3333 3677 2.902705 ATAGCGCCGACCTCAAAATA 57.097 45.000 2.29 0.00 0.00 1.40
3334 3678 2.038387 AATAGCGCCGACCTCAAAAT 57.962 45.000 2.29 0.00 0.00 1.82
3335 3679 1.816074 AAATAGCGCCGACCTCAAAA 58.184 45.000 2.29 0.00 0.00 2.44
3336 3680 1.466950 CAAAATAGCGCCGACCTCAAA 59.533 47.619 2.29 0.00 0.00 2.69
3337 3681 1.083489 CAAAATAGCGCCGACCTCAA 58.917 50.000 2.29 0.00 0.00 3.02
3338 3682 1.366111 GCAAAATAGCGCCGACCTCA 61.366 55.000 2.29 0.00 0.00 3.86
3339 3683 1.090052 AGCAAAATAGCGCCGACCTC 61.090 55.000 2.29 0.00 40.15 3.85
3340 3684 1.078426 AGCAAAATAGCGCCGACCT 60.078 52.632 2.29 0.00 40.15 3.85
3341 3685 1.062525 CAGCAAAATAGCGCCGACC 59.937 57.895 2.29 0.00 40.15 4.79
3342 3686 1.003851 TACAGCAAAATAGCGCCGAC 58.996 50.000 2.29 0.00 40.15 4.79
3343 3687 1.286501 CTACAGCAAAATAGCGCCGA 58.713 50.000 2.29 0.00 40.15 5.54
3344 3688 0.316196 GCTACAGCAAAATAGCGCCG 60.316 55.000 2.29 0.00 41.59 6.46
3345 3689 3.533913 GCTACAGCAAAATAGCGCC 57.466 52.632 2.29 0.00 41.59 6.53
3348 3692 0.925721 GCGCGCTACAGCAAAATAGC 60.926 55.000 26.67 0.00 42.21 2.97
3349 3693 0.652592 AGCGCGCTACAGCAAAATAG 59.347 50.000 35.79 0.00 42.21 1.73
3350 3694 1.929230 TAGCGCGCTACAGCAAAATA 58.071 45.000 35.48 13.06 42.21 1.40
3351 3695 1.299541 ATAGCGCGCTACAGCAAAAT 58.700 45.000 40.42 22.12 42.21 1.82
3352 3696 1.083489 AATAGCGCGCTACAGCAAAA 58.917 45.000 40.42 20.74 42.21 2.44
3353 3697 1.083489 AAATAGCGCGCTACAGCAAA 58.917 45.000 40.42 21.55 42.21 3.68
3354 3698 1.083489 AAAATAGCGCGCTACAGCAA 58.917 45.000 40.42 22.36 42.21 3.91
3355 3699 1.083489 AAAAATAGCGCGCTACAGCA 58.917 45.000 40.42 23.17 42.21 4.41
3356 3700 3.897819 AAAAATAGCGCGCTACAGC 57.102 47.368 40.42 6.98 37.78 4.40
3371 3715 7.291566 TGTTACCAAGGTATTGAGAGGAAAAA 58.708 34.615 0.00 0.00 38.83 1.94
3372 3716 6.843752 TGTTACCAAGGTATTGAGAGGAAAA 58.156 36.000 0.00 0.00 38.83 2.29
3373 3717 6.442541 TGTTACCAAGGTATTGAGAGGAAA 57.557 37.500 0.00 0.00 38.83 3.13
3374 3718 6.214615 TCATGTTACCAAGGTATTGAGAGGAA 59.785 38.462 0.00 0.00 38.83 3.36
3375 3719 5.724370 TCATGTTACCAAGGTATTGAGAGGA 59.276 40.000 0.00 0.00 38.83 3.71
3376 3720 5.817816 GTCATGTTACCAAGGTATTGAGAGG 59.182 44.000 0.00 0.00 38.83 3.69
3511 3855 6.606234 TTGTAACTGATTTTCGCAGTAACA 57.394 33.333 0.00 0.00 45.27 2.41
3741 4086 7.857569 TCTATAAAACTATGGTACGCAATTGC 58.142 34.615 20.76 20.76 37.78 3.56
3742 4087 9.864034 CTTCTATAAAACTATGGTACGCAATTG 57.136 33.333 0.00 0.00 0.00 2.32
3743 4088 9.052759 CCTTCTATAAAACTATGGTACGCAATT 57.947 33.333 0.00 0.00 0.00 2.32
3744 4089 7.172703 GCCTTCTATAAAACTATGGTACGCAAT 59.827 37.037 0.00 0.00 0.00 3.56
3745 4090 6.480981 GCCTTCTATAAAACTATGGTACGCAA 59.519 38.462 0.00 0.00 0.00 4.85
3746 4091 5.987347 GCCTTCTATAAAACTATGGTACGCA 59.013 40.000 0.00 0.00 0.00 5.24
3747 4092 5.987347 TGCCTTCTATAAAACTATGGTACGC 59.013 40.000 0.00 0.00 0.00 4.42
3748 4093 7.431249 TCTGCCTTCTATAAAACTATGGTACG 58.569 38.462 0.00 0.00 0.00 3.67
3749 4094 9.780186 ATTCTGCCTTCTATAAAACTATGGTAC 57.220 33.333 0.00 0.00 0.00 3.34
3750 4095 9.778741 CATTCTGCCTTCTATAAAACTATGGTA 57.221 33.333 0.00 0.00 0.00 3.25
3751 4096 8.275040 ACATTCTGCCTTCTATAAAACTATGGT 58.725 33.333 0.00 0.00 0.00 3.55
3752 4097 8.682936 ACATTCTGCCTTCTATAAAACTATGG 57.317 34.615 0.00 0.00 0.00 2.74
3753 4098 9.941664 CAACATTCTGCCTTCTATAAAACTATG 57.058 33.333 0.00 0.00 0.00 2.23
3754 4099 9.905713 TCAACATTCTGCCTTCTATAAAACTAT 57.094 29.630 0.00 0.00 0.00 2.12
3755 4100 9.383519 CTCAACATTCTGCCTTCTATAAAACTA 57.616 33.333 0.00 0.00 0.00 2.24
3756 4101 7.337942 CCTCAACATTCTGCCTTCTATAAAACT 59.662 37.037 0.00 0.00 0.00 2.66
3757 4102 7.415653 CCCTCAACATTCTGCCTTCTATAAAAC 60.416 40.741 0.00 0.00 0.00 2.43
3758 4103 6.603201 CCCTCAACATTCTGCCTTCTATAAAA 59.397 38.462 0.00 0.00 0.00 1.52
3759 4104 6.122277 CCCTCAACATTCTGCCTTCTATAAA 58.878 40.000 0.00 0.00 0.00 1.40
3760 4105 5.397899 CCCCTCAACATTCTGCCTTCTATAA 60.398 44.000 0.00 0.00 0.00 0.98
3761 4106 4.103153 CCCCTCAACATTCTGCCTTCTATA 59.897 45.833 0.00 0.00 0.00 1.31
3762 4107 3.117738 CCCCTCAACATTCTGCCTTCTAT 60.118 47.826 0.00 0.00 0.00 1.98
3763 4108 2.239654 CCCCTCAACATTCTGCCTTCTA 59.760 50.000 0.00 0.00 0.00 2.10
3764 4109 1.005215 CCCCTCAACATTCTGCCTTCT 59.995 52.381 0.00 0.00 0.00 2.85
3765 4110 1.004745 TCCCCTCAACATTCTGCCTTC 59.995 52.381 0.00 0.00 0.00 3.46
3766 4111 1.005215 CTCCCCTCAACATTCTGCCTT 59.995 52.381 0.00 0.00 0.00 4.35
3767 4112 0.622665 CTCCCCTCAACATTCTGCCT 59.377 55.000 0.00 0.00 0.00 4.75
3768 4113 1.034292 GCTCCCCTCAACATTCTGCC 61.034 60.000 0.00 0.00 0.00 4.85
3769 4114 0.034670 AGCTCCCCTCAACATTCTGC 60.035 55.000 0.00 0.00 0.00 4.26
3770 4115 2.503895 AAGCTCCCCTCAACATTCTG 57.496 50.000 0.00 0.00 0.00 3.02
3771 4116 3.532641 AAAAGCTCCCCTCAACATTCT 57.467 42.857 0.00 0.00 0.00 2.40
4042 4390 4.037208 CCATAAACAATCCTGTGATCAGCC 59.963 45.833 0.00 0.00 40.09 4.85
4106 4454 1.494960 AGGCTCTCAGGATCCTCAAC 58.505 55.000 12.69 0.00 33.23 3.18
4139 4487 5.153950 ACTCATAGACCACTTCCAAGAAC 57.846 43.478 0.00 0.00 0.00 3.01
4251 4599 3.102052 ACAAACAGCAGGAAAGCAATG 57.898 42.857 0.00 0.00 36.85 2.82
4262 4610 6.544197 TCCAAGTGAAAATAGTACAAACAGCA 59.456 34.615 0.00 0.00 0.00 4.41
4287 4635 5.440610 CCTTTCCAGCAGTATCCAGTATTT 58.559 41.667 0.00 0.00 0.00 1.40
4302 4650 1.630878 AGCAGAGTAACCCCTTTCCAG 59.369 52.381 0.00 0.00 0.00 3.86
4376 4724 5.123820 CGAAGAACTAAGGCAAAATGATGGA 59.876 40.000 0.00 0.00 0.00 3.41
4382 4730 7.606456 TCAGAATACGAAGAACTAAGGCAAAAT 59.394 33.333 0.00 0.00 0.00 1.82
4463 4811 9.995957 GCTTATTCTTATTCAGGTTCTTTTCTC 57.004 33.333 0.00 0.00 0.00 2.87
4464 4812 9.520515 TGCTTATTCTTATTCAGGTTCTTTTCT 57.479 29.630 0.00 0.00 0.00 2.52
4476 4824 7.122799 AGTTTGGGACCTTGCTTATTCTTATTC 59.877 37.037 0.00 0.00 0.00 1.75
4477 4825 6.954102 AGTTTGGGACCTTGCTTATTCTTATT 59.046 34.615 0.00 0.00 0.00 1.40
4478 4826 6.494059 AGTTTGGGACCTTGCTTATTCTTAT 58.506 36.000 0.00 0.00 0.00 1.73
4479 4827 5.887754 AGTTTGGGACCTTGCTTATTCTTA 58.112 37.500 0.00 0.00 0.00 2.10
4480 4828 4.740902 AGTTTGGGACCTTGCTTATTCTT 58.259 39.130 0.00 0.00 0.00 2.52
4481 4829 4.388577 AGTTTGGGACCTTGCTTATTCT 57.611 40.909 0.00 0.00 0.00 2.40
4496 4844 7.497909 AGTTATGGATAACGGATGTAAGTTTGG 59.502 37.037 4.30 0.00 45.48 3.28
4505 4853 4.563580 CCCTGGAGTTATGGATAACGGATG 60.564 50.000 0.00 0.00 45.48 3.51
4546 4894 0.820226 GCCAGAATTCAGGAAAGGGC 59.180 55.000 20.29 10.50 0.00 5.19
4580 4928 3.013921 AGCAAAAGTCCAAACGAACAGA 58.986 40.909 0.00 0.00 0.00 3.41
4582 4930 3.442273 AGAAGCAAAAGTCCAAACGAACA 59.558 39.130 0.00 0.00 0.00 3.18
4586 4934 4.813296 AGTAGAAGCAAAAGTCCAAACG 57.187 40.909 0.00 0.00 0.00 3.60
4593 4941 4.889995 AGCTCCAAAAGTAGAAGCAAAAGT 59.110 37.500 0.00 0.00 0.00 2.66
4597 4945 5.221244 GGAAAAGCTCCAAAAGTAGAAGCAA 60.221 40.000 0.00 0.00 44.67 3.91
4614 4962 2.217429 TTTTGCCGAAGTGGAAAAGC 57.783 45.000 0.00 0.00 46.35 3.51
4638 4989 8.831715 AAAACACCTATTTAGGAGCATTTTTG 57.168 30.769 10.61 0.00 46.63 2.44
4690 5041 8.866956 GGCTTTTGAATCAATATTGCTATATGC 58.133 33.333 10.76 7.78 43.25 3.14
4790 5143 5.709631 ACTGTTCATTTGGGTTTTTGCTTTT 59.290 32.000 0.00 0.00 0.00 2.27
4791 5144 5.123661 CACTGTTCATTTGGGTTTTTGCTTT 59.876 36.000 0.00 0.00 0.00 3.51
4799 5152 2.086610 AGGCACTGTTCATTTGGGTT 57.913 45.000 0.00 0.00 37.18 4.11
4800 5153 2.969821 TAGGCACTGTTCATTTGGGT 57.030 45.000 0.00 0.00 41.52 4.51
4807 5160 3.840666 AGGAGAGATTTAGGCACTGTTCA 59.159 43.478 0.00 0.00 41.52 3.18
4808 5161 4.479786 AGGAGAGATTTAGGCACTGTTC 57.520 45.455 0.00 0.00 41.52 3.18
4814 5167 2.774234 CCTCCAAGGAGAGATTTAGGCA 59.226 50.000 17.57 0.00 44.53 4.75
4815 5168 2.774809 ACCTCCAAGGAGAGATTTAGGC 59.225 50.000 17.57 0.00 44.53 3.93
4819 5172 7.510675 TGTTATTACCTCCAAGGAGAGATTT 57.489 36.000 17.57 1.53 44.53 2.17
4822 5175 6.500751 AGTTTGTTATTACCTCCAAGGAGAGA 59.499 38.462 17.57 1.96 44.53 3.10
4824 5177 6.697641 AGTTTGTTATTACCTCCAAGGAGA 57.302 37.500 17.57 0.00 44.53 3.71
4903 5681 3.575630 TCCAAAACTCAAGTCGATCTCG 58.424 45.455 0.00 0.00 41.45 4.04
4905 5683 5.409826 GTCAATCCAAAACTCAAGTCGATCT 59.590 40.000 0.00 0.00 0.00 2.75
4906 5684 5.409826 AGTCAATCCAAAACTCAAGTCGATC 59.590 40.000 0.00 0.00 0.00 3.69
4907 5685 5.308825 AGTCAATCCAAAACTCAAGTCGAT 58.691 37.500 0.00 0.00 0.00 3.59
4909 5687 4.376413 CGAGTCAATCCAAAACTCAAGTCG 60.376 45.833 0.00 0.00 39.49 4.18
4910 5688 4.750098 TCGAGTCAATCCAAAACTCAAGTC 59.250 41.667 0.00 0.00 39.49 3.01
4912 5690 5.673337 TTCGAGTCAATCCAAAACTCAAG 57.327 39.130 0.00 0.00 39.49 3.02
4913 5691 6.039270 ACATTTCGAGTCAATCCAAAACTCAA 59.961 34.615 0.00 0.00 39.49 3.02
4914 5692 5.530915 ACATTTCGAGTCAATCCAAAACTCA 59.469 36.000 0.00 0.00 39.49 3.41
4915 5693 5.853282 CACATTTCGAGTCAATCCAAAACTC 59.147 40.000 0.00 0.00 36.82 3.01
4916 5694 5.530915 TCACATTTCGAGTCAATCCAAAACT 59.469 36.000 0.00 0.00 0.00 2.66
4917 5695 5.757886 TCACATTTCGAGTCAATCCAAAAC 58.242 37.500 0.00 0.00 0.00 2.43
4918 5696 5.562696 GCTCACATTTCGAGTCAATCCAAAA 60.563 40.000 0.00 0.00 32.83 2.44
4919 5697 4.083324 GCTCACATTTCGAGTCAATCCAAA 60.083 41.667 0.00 0.00 32.83 3.28
4925 5703 1.428448 CGGCTCACATTTCGAGTCAA 58.572 50.000 0.00 0.00 34.70 3.18
4926 5704 1.014044 GCGGCTCACATTTCGAGTCA 61.014 55.000 0.00 0.00 34.70 3.41
4927 5705 0.737715 AGCGGCTCACATTTCGAGTC 60.738 55.000 0.00 0.00 32.83 3.36
4929 5707 1.746727 CGAGCGGCTCACATTTCGAG 61.747 60.000 27.83 6.11 0.00 4.04
4931 5709 1.746727 CTCGAGCGGCTCACATTTCG 61.747 60.000 27.83 14.13 0.00 3.46
4932 5710 0.458543 TCTCGAGCGGCTCACATTTC 60.459 55.000 27.83 1.95 0.00 2.17
4933 5711 0.176680 ATCTCGAGCGGCTCACATTT 59.823 50.000 27.83 7.15 0.00 2.32
4936 5714 2.801421 GATCTCGAGCGGCTCACA 59.199 61.111 27.83 13.73 0.00 3.58
4947 5771 5.725110 ATCCAAAATTCAAGTCGATCTCG 57.275 39.130 0.00 0.00 41.45 4.04
4953 5777 6.437928 TCAAGTCAATCCAAAATTCAAGTCG 58.562 36.000 0.00 0.00 0.00 4.18
4967 5791 7.310664 TCAGCTCATTTCATTTCAAGTCAATC 58.689 34.615 0.00 0.00 0.00 2.67
4971 5795 6.251655 ACTCAGCTCATTTCATTTCAAGTC 57.748 37.500 0.00 0.00 0.00 3.01
4988 5812 4.032217 CGAGTCAATGTGTTCATACTCAGC 59.968 45.833 0.00 0.00 38.53 4.26
4993 5817 7.060600 TCATTTCGAGTCAATGTGTTCATAC 57.939 36.000 7.90 0.00 33.91 2.39
4999 5823 6.427853 TCTCATTTCATTTCGAGTCAATGTGT 59.572 34.615 7.90 0.00 33.91 3.72
5000 5824 6.834876 TCTCATTTCATTTCGAGTCAATGTG 58.165 36.000 7.90 5.06 33.91 3.21
5001 5825 7.335171 TCATCTCATTTCATTTCGAGTCAATGT 59.665 33.333 7.90 0.00 33.91 2.71
5002 5826 7.691158 TCATCTCATTTCATTTCGAGTCAATG 58.309 34.615 2.49 2.49 33.55 2.82
5003 5827 7.551974 ACTCATCTCATTTCATTTCGAGTCAAT 59.448 33.333 0.00 0.00 0.00 2.57
5004 5828 6.875726 ACTCATCTCATTTCATTTCGAGTCAA 59.124 34.615 0.00 0.00 0.00 3.18
5005 5829 6.401394 ACTCATCTCATTTCATTTCGAGTCA 58.599 36.000 0.00 0.00 0.00 3.41
5006 5830 6.900568 ACTCATCTCATTTCATTTCGAGTC 57.099 37.500 0.00 0.00 0.00 3.36
5007 5831 8.200120 TCATACTCATCTCATTTCATTTCGAGT 58.800 33.333 0.00 0.00 35.51 4.18
5008 5832 8.585189 TCATACTCATCTCATTTCATTTCGAG 57.415 34.615 0.00 0.00 0.00 4.04
5009 5833 8.820933 GTTCATACTCATCTCATTTCATTTCGA 58.179 33.333 0.00 0.00 0.00 3.71
5010 5834 8.606602 TGTTCATACTCATCTCATTTCATTTCG 58.393 33.333 0.00 0.00 0.00 3.46
5011 5835 9.713740 GTGTTCATACTCATCTCATTTCATTTC 57.286 33.333 0.00 0.00 0.00 2.17
5012 5836 9.458727 AGTGTTCATACTCATCTCATTTCATTT 57.541 29.630 0.00 0.00 0.00 2.32
5013 5837 9.458727 AAGTGTTCATACTCATCTCATTTCATT 57.541 29.630 0.00 0.00 0.00 2.57
5014 5838 9.458727 AAAGTGTTCATACTCATCTCATTTCAT 57.541 29.630 0.00 0.00 0.00 2.57
5015 5839 8.853077 AAAGTGTTCATACTCATCTCATTTCA 57.147 30.769 0.00 0.00 0.00 2.69
5017 5841 9.388506 CCTAAAGTGTTCATACTCATCTCATTT 57.611 33.333 0.00 0.00 0.00 2.32
5018 5842 8.543774 ACCTAAAGTGTTCATACTCATCTCATT 58.456 33.333 0.00 0.00 0.00 2.57
5019 5843 8.083828 ACCTAAAGTGTTCATACTCATCTCAT 57.916 34.615 0.00 0.00 0.00 2.90
5020 5844 7.482169 ACCTAAAGTGTTCATACTCATCTCA 57.518 36.000 0.00 0.00 0.00 3.27
5021 5845 7.650104 GCTACCTAAAGTGTTCATACTCATCTC 59.350 40.741 0.00 0.00 0.00 2.75
5022 5846 7.343316 AGCTACCTAAAGTGTTCATACTCATCT 59.657 37.037 0.00 0.00 0.00 2.90
5023 5847 7.493367 AGCTACCTAAAGTGTTCATACTCATC 58.507 38.462 0.00 0.00 0.00 2.92
5024 5848 7.425224 AGCTACCTAAAGTGTTCATACTCAT 57.575 36.000 0.00 0.00 0.00 2.90
5025 5849 6.852420 AGCTACCTAAAGTGTTCATACTCA 57.148 37.500 0.00 0.00 0.00 3.41
5026 5850 7.321153 TCAAGCTACCTAAAGTGTTCATACTC 58.679 38.462 0.00 0.00 0.00 2.59
5027 5851 7.241042 TCAAGCTACCTAAAGTGTTCATACT 57.759 36.000 0.00 0.00 0.00 2.12
5028 5852 7.043325 CGATCAAGCTACCTAAAGTGTTCATAC 60.043 40.741 0.00 0.00 0.00 2.39
5029 5853 6.978659 CGATCAAGCTACCTAAAGTGTTCATA 59.021 38.462 0.00 0.00 0.00 2.15
5030 5854 5.812642 CGATCAAGCTACCTAAAGTGTTCAT 59.187 40.000 0.00 0.00 0.00 2.57
5031 5855 5.047590 TCGATCAAGCTACCTAAAGTGTTCA 60.048 40.000 0.00 0.00 0.00 3.18
5032 5856 5.408356 TCGATCAAGCTACCTAAAGTGTTC 58.592 41.667 0.00 0.00 0.00 3.18
5033 5857 5.185249 TCTCGATCAAGCTACCTAAAGTGTT 59.815 40.000 0.00 0.00 0.00 3.32
5034 5858 4.705507 TCTCGATCAAGCTACCTAAAGTGT 59.294 41.667 0.00 0.00 0.00 3.55
5035 5859 5.250235 TCTCGATCAAGCTACCTAAAGTG 57.750 43.478 0.00 0.00 0.00 3.16
5042 5866 3.146618 TCGTTTCTCGATCAAGCTACC 57.853 47.619 0.00 0.00 44.01 3.18
5053 5877 3.060098 GCTCAAGATCAACTCGTTTCTCG 59.940 47.826 0.00 0.00 41.41 4.04
5059 5883 2.224281 TGTTGGCTCAAGATCAACTCGT 60.224 45.455 13.72 0.00 40.75 4.18
5064 5888 3.008375 AGCTAGTGTTGGCTCAAGATCAA 59.992 43.478 0.00 0.00 36.20 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.