Multiple sequence alignment - TraesCS5B01G488100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G488100 chr5B 100.000 2231 0 0 1 2231 658745415 658747645 0.000000e+00 4120.0
1 TraesCS5B01G488100 chr5B 83.871 124 14 5 399 520 458389683 458389564 1.810000e-21 113.0
2 TraesCS5B01G488100 chr5D 92.417 1055 62 9 573 1621 522308251 522309293 0.000000e+00 1489.0
3 TraesCS5B01G488100 chr5D 87.824 501 45 4 1620 2104 522309435 522309935 6.910000e-160 573.0
4 TraesCS5B01G488100 chr5D 81.528 563 86 4 1620 2165 380520789 380520228 4.370000e-122 448.0
5 TraesCS5B01G488100 chr5A 91.198 693 51 9 573 1261 650504679 650505365 0.000000e+00 933.0
6 TraesCS5B01G488100 chr5A 81.356 472 55 16 1712 2164 144391541 144391084 9.800000e-94 353.0
7 TraesCS5B01G488100 chr5A 85.119 168 11 8 1388 1552 650505516 650505672 2.290000e-35 159.0
8 TraesCS5B01G488100 chr4A 85.027 561 68 1 1620 2164 647771142 647771702 6.960000e-155 556.0
9 TraesCS5B01G488100 chr4A 85.027 561 68 1 1620 2164 647802706 647803266 6.960000e-155 556.0
10 TraesCS5B01G488100 chr4A 77.236 246 45 7 254 491 723799961 723800203 1.390000e-27 134.0
11 TraesCS5B01G488100 chr1D 85.249 522 41 24 807 1315 47946159 47946657 2.560000e-139 505.0
12 TraesCS5B01G488100 chr1D 80.645 279 30 11 273 540 355835750 355836015 6.290000e-46 195.0
13 TraesCS5B01G488100 chr2B 82.948 563 78 11 1620 2165 57044004 57044565 1.990000e-135 492.0
14 TraesCS5B01G488100 chr2B 79.965 569 89 10 1620 2165 750008636 750008070 1.610000e-106 396.0
15 TraesCS5B01G488100 chr2A 81.900 558 89 11 1618 2166 528672043 528672597 5.610000e-126 460.0
16 TraesCS5B01G488100 chr4B 83.135 504 68 5 1679 2166 443635444 443634942 5.650000e-121 444.0
17 TraesCS5B01G488100 chr3B 81.139 562 90 2 1620 2165 160152085 160152646 9.460000e-119 436.0
18 TraesCS5B01G488100 chr3B 80.035 566 89 10 1620 2166 707042663 707042103 4.460000e-107 398.0
19 TraesCS5B01G488100 chr3B 82.331 266 31 13 254 510 9074530 9074272 1.340000e-52 217.0
20 TraesCS5B01G488100 chr7A 80.783 562 89 7 1620 2165 459489891 459489333 2.650000e-114 422.0
21 TraesCS5B01G488100 chr7B 85.000 380 41 7 1802 2165 199274137 199274516 2.710000e-99 372.0
22 TraesCS5B01G488100 chr7B 78.417 556 97 20 1626 2166 141042363 141041816 7.630000e-90 340.0
23 TraesCS5B01G488100 chr7B 75.180 556 111 11 1626 2158 215011509 215010958 1.030000e-58 237.0
24 TraesCS5B01G488100 chr1A 88.449 303 17 7 1030 1315 47822535 47822836 1.270000e-92 350.0
25 TraesCS5B01G488100 chr1A 88.636 132 15 0 990 1121 47822408 47822539 6.380000e-36 161.0
26 TraesCS5B01G488100 chr1A 78.862 246 39 10 281 519 99148044 99148283 1.070000e-33 154.0
27 TraesCS5B01G488100 chr6B 85.809 303 43 0 1620 1922 161715885 161715583 2.760000e-84 322.0
28 TraesCS5B01G488100 chr1B 88.725 204 20 2 1114 1315 67678802 67679004 1.710000e-61 246.0
29 TraesCS5B01G488100 chr7D 88.776 196 17 4 1971 2165 106629972 106629781 3.700000e-58 235.0
30 TraesCS5B01G488100 chr2D 84.810 237 27 6 270 502 647799742 647799973 1.720000e-56 230.0
31 TraesCS5B01G488100 chr2D 78.378 222 38 7 274 491 433686768 433686983 3.860000e-28 135.0
32 TraesCS5B01G488100 chr4D 91.045 67 6 0 2165 2231 500725940 500725874 8.480000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G488100 chr5B 658745415 658747645 2230 False 4120 4120 100.0000 1 2231 1 chr5B.!!$F1 2230
1 TraesCS5B01G488100 chr5D 522308251 522309935 1684 False 1031 1489 90.1205 573 2104 2 chr5D.!!$F1 1531
2 TraesCS5B01G488100 chr5D 380520228 380520789 561 True 448 448 81.5280 1620 2165 1 chr5D.!!$R1 545
3 TraesCS5B01G488100 chr5A 650504679 650505672 993 False 546 933 88.1585 573 1552 2 chr5A.!!$F1 979
4 TraesCS5B01G488100 chr4A 647771142 647771702 560 False 556 556 85.0270 1620 2164 1 chr4A.!!$F1 544
5 TraesCS5B01G488100 chr4A 647802706 647803266 560 False 556 556 85.0270 1620 2164 1 chr4A.!!$F2 544
6 TraesCS5B01G488100 chr2B 57044004 57044565 561 False 492 492 82.9480 1620 2165 1 chr2B.!!$F1 545
7 TraesCS5B01G488100 chr2B 750008070 750008636 566 True 396 396 79.9650 1620 2165 1 chr2B.!!$R1 545
8 TraesCS5B01G488100 chr2A 528672043 528672597 554 False 460 460 81.9000 1618 2166 1 chr2A.!!$F1 548
9 TraesCS5B01G488100 chr4B 443634942 443635444 502 True 444 444 83.1350 1679 2166 1 chr4B.!!$R1 487
10 TraesCS5B01G488100 chr3B 160152085 160152646 561 False 436 436 81.1390 1620 2165 1 chr3B.!!$F1 545
11 TraesCS5B01G488100 chr3B 707042103 707042663 560 True 398 398 80.0350 1620 2166 1 chr3B.!!$R2 546
12 TraesCS5B01G488100 chr7A 459489333 459489891 558 True 422 422 80.7830 1620 2165 1 chr7A.!!$R1 545
13 TraesCS5B01G488100 chr7B 141041816 141042363 547 True 340 340 78.4170 1626 2166 1 chr7B.!!$R1 540
14 TraesCS5B01G488100 chr7B 215010958 215011509 551 True 237 237 75.1800 1626 2158 1 chr7B.!!$R2 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.036483 GGCGGCCAATTTGGTTGATT 60.036 50.0 15.62 0.0 40.46 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 1609 0.179034 GGGATCTGCTGGACATGGTC 60.179 60.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.142780 GCCCTCGCCTTATTCACC 57.857 61.111 0.00 0.00 0.00 4.02
27 28 1.223487 GCCCTCGCCTTATTCACCA 59.777 57.895 0.00 0.00 0.00 4.17
28 29 0.179018 GCCCTCGCCTTATTCACCAT 60.179 55.000 0.00 0.00 0.00 3.55
29 30 1.071699 GCCCTCGCCTTATTCACCATA 59.928 52.381 0.00 0.00 0.00 2.74
30 31 2.872038 GCCCTCGCCTTATTCACCATAG 60.872 54.545 0.00 0.00 0.00 2.23
31 32 2.368875 CCCTCGCCTTATTCACCATAGT 59.631 50.000 0.00 0.00 0.00 2.12
32 33 3.576982 CCCTCGCCTTATTCACCATAGTA 59.423 47.826 0.00 0.00 0.00 1.82
33 34 4.322049 CCCTCGCCTTATTCACCATAGTAG 60.322 50.000 0.00 0.00 0.00 2.57
34 35 4.322049 CCTCGCCTTATTCACCATAGTAGG 60.322 50.000 0.00 0.00 0.00 3.18
35 36 3.576982 TCGCCTTATTCACCATAGTAGGG 59.423 47.826 0.00 0.00 0.00 3.53
36 37 3.576982 CGCCTTATTCACCATAGTAGGGA 59.423 47.826 8.08 0.00 0.00 4.20
37 38 4.560919 CGCCTTATTCACCATAGTAGGGAC 60.561 50.000 8.08 0.00 0.00 4.46
38 39 4.262938 GCCTTATTCACCATAGTAGGGACC 60.263 50.000 8.08 0.00 0.00 4.46
39 40 4.286291 CCTTATTCACCATAGTAGGGACCC 59.714 50.000 8.08 0.59 0.00 4.46
40 41 2.185663 TTCACCATAGTAGGGACCCC 57.814 55.000 8.08 1.17 0.00 4.95
41 42 1.020462 TCACCATAGTAGGGACCCCA 58.980 55.000 8.08 0.00 38.92 4.96
42 43 1.366787 TCACCATAGTAGGGACCCCAA 59.633 52.381 8.08 0.00 38.92 4.12
43 44 2.201830 CACCATAGTAGGGACCCCAAA 58.798 52.381 8.08 0.00 38.92 3.28
44 45 2.172717 CACCATAGTAGGGACCCCAAAG 59.827 54.545 8.08 0.00 38.92 2.77
45 46 1.774856 CCATAGTAGGGACCCCAAAGG 59.225 57.143 7.00 0.00 43.78 3.11
46 47 2.631268 CCATAGTAGGGACCCCAAAGGA 60.631 54.545 7.00 0.00 39.89 3.36
47 48 3.120108 CATAGTAGGGACCCCAAAGGAA 58.880 50.000 7.00 0.00 39.89 3.36
48 49 2.378308 AGTAGGGACCCCAAAGGAAT 57.622 50.000 7.00 0.00 39.89 3.01
49 50 2.206223 AGTAGGGACCCCAAAGGAATC 58.794 52.381 7.00 0.00 39.89 2.52
50 51 1.214673 GTAGGGACCCCAAAGGAATCC 59.785 57.143 7.00 0.00 39.89 3.01
51 52 1.076995 GGGACCCCAAAGGAATCCG 60.077 63.158 0.00 0.00 38.52 4.18
52 53 1.753078 GGACCCCAAAGGAATCCGC 60.753 63.158 0.00 0.00 39.89 5.54
53 54 1.001393 GACCCCAAAGGAATCCGCA 60.001 57.895 0.00 0.00 39.89 5.69
54 55 1.000896 ACCCCAAAGGAATCCGCAG 60.001 57.895 0.00 0.00 39.89 5.18
55 56 1.302949 CCCCAAAGGAATCCGCAGA 59.697 57.895 0.00 0.00 38.24 4.26
56 57 0.749454 CCCCAAAGGAATCCGCAGAG 60.749 60.000 0.00 0.00 38.24 3.35
57 58 1.379642 CCCAAAGGAATCCGCAGAGC 61.380 60.000 0.00 0.00 33.47 4.09
58 59 1.379642 CCAAAGGAATCCGCAGAGCC 61.380 60.000 0.00 0.00 0.00 4.70
59 60 0.393537 CAAAGGAATCCGCAGAGCCT 60.394 55.000 0.00 0.00 33.39 4.58
60 61 0.329596 AAAGGAATCCGCAGAGCCTT 59.670 50.000 0.00 1.96 40.56 4.35
61 62 0.107459 AAGGAATCCGCAGAGCCTTC 60.107 55.000 0.00 0.00 36.50 3.46
62 63 1.524849 GGAATCCGCAGAGCCTTCC 60.525 63.158 0.00 0.00 0.00 3.46
63 64 1.524482 GAATCCGCAGAGCCTTCCT 59.476 57.895 0.00 0.00 0.00 3.36
64 65 0.531753 GAATCCGCAGAGCCTTCCTC 60.532 60.000 0.00 0.00 41.07 3.71
65 66 1.267574 AATCCGCAGAGCCTTCCTCA 61.268 55.000 0.00 0.00 43.31 3.86
66 67 1.267574 ATCCGCAGAGCCTTCCTCAA 61.268 55.000 0.00 0.00 43.31 3.02
67 68 1.222936 CCGCAGAGCCTTCCTCAAT 59.777 57.895 0.00 0.00 43.31 2.57
68 69 1.094073 CCGCAGAGCCTTCCTCAATG 61.094 60.000 0.00 0.00 43.31 2.82
69 70 1.094073 CGCAGAGCCTTCCTCAATGG 61.094 60.000 0.00 0.00 43.31 3.16
70 71 1.382692 GCAGAGCCTTCCTCAATGGC 61.383 60.000 0.00 0.00 43.31 4.40
73 74 3.880846 GCCTTCCTCAATGGCGCG 61.881 66.667 0.00 0.00 37.11 6.86
74 75 2.125147 CCTTCCTCAATGGCGCGA 60.125 61.111 12.10 0.00 35.26 5.87
75 76 2.464459 CCTTCCTCAATGGCGCGAC 61.464 63.158 12.10 8.22 35.26 5.19
76 77 1.741401 CTTCCTCAATGGCGCGACA 60.741 57.895 21.39 21.39 35.26 4.35
77 78 1.699656 CTTCCTCAATGGCGCGACAG 61.700 60.000 23.88 8.09 35.26 3.51
78 79 3.197790 CCTCAATGGCGCGACAGG 61.198 66.667 23.88 16.14 0.00 4.00
79 80 2.125552 CTCAATGGCGCGACAGGA 60.126 61.111 23.88 19.84 0.00 3.86
80 81 1.741401 CTCAATGGCGCGACAGGAA 60.741 57.895 23.88 6.80 0.00 3.36
81 82 1.699656 CTCAATGGCGCGACAGGAAG 61.700 60.000 23.88 13.52 0.00 3.46
82 83 2.034879 CAATGGCGCGACAGGAAGT 61.035 57.895 23.88 0.00 0.00 3.01
83 84 1.302511 AATGGCGCGACAGGAAGTT 60.303 52.632 23.88 6.30 0.00 2.66
84 85 1.577328 AATGGCGCGACAGGAAGTTG 61.577 55.000 23.88 0.00 34.52 3.16
85 86 2.357034 GGCGCGACAGGAAGTTGA 60.357 61.111 12.10 0.00 33.04 3.18
86 87 2.668280 GGCGCGACAGGAAGTTGAC 61.668 63.158 12.10 0.00 33.04 3.18
87 88 1.954146 GCGCGACAGGAAGTTGACA 60.954 57.895 12.10 0.00 33.04 3.58
88 89 1.891060 GCGCGACAGGAAGTTGACAG 61.891 60.000 12.10 0.00 33.04 3.51
89 90 1.862806 GCGACAGGAAGTTGACAGC 59.137 57.895 0.00 0.00 33.04 4.40
90 91 0.601311 GCGACAGGAAGTTGACAGCT 60.601 55.000 0.00 0.00 33.04 4.24
91 92 1.336887 GCGACAGGAAGTTGACAGCTA 60.337 52.381 0.00 0.00 33.04 3.32
92 93 2.600731 CGACAGGAAGTTGACAGCTAG 58.399 52.381 0.00 0.00 33.04 3.42
93 94 2.672478 CGACAGGAAGTTGACAGCTAGG 60.672 54.545 0.00 0.00 33.04 3.02
94 95 2.563179 GACAGGAAGTTGACAGCTAGGA 59.437 50.000 0.00 0.00 0.00 2.94
95 96 2.300437 ACAGGAAGTTGACAGCTAGGAC 59.700 50.000 0.00 0.00 0.00 3.85
96 97 1.546476 AGGAAGTTGACAGCTAGGACG 59.454 52.381 0.00 0.00 0.00 4.79
97 98 1.404315 GGAAGTTGACAGCTAGGACGG 60.404 57.143 0.00 0.00 0.00 4.79
98 99 1.544691 GAAGTTGACAGCTAGGACGGA 59.455 52.381 0.00 0.00 0.00 4.69
99 100 1.178276 AGTTGACAGCTAGGACGGAG 58.822 55.000 0.00 0.00 0.00 4.63
100 101 0.173708 GTTGACAGCTAGGACGGAGG 59.826 60.000 0.00 0.00 0.00 4.30
101 102 0.039180 TTGACAGCTAGGACGGAGGA 59.961 55.000 0.00 0.00 0.00 3.71
102 103 0.394488 TGACAGCTAGGACGGAGGAG 60.394 60.000 0.00 0.00 0.00 3.69
103 104 1.076632 ACAGCTAGGACGGAGGAGG 60.077 63.158 0.00 0.00 0.00 4.30
104 105 1.227664 CAGCTAGGACGGAGGAGGA 59.772 63.158 0.00 0.00 0.00 3.71
105 106 0.821711 CAGCTAGGACGGAGGAGGAG 60.822 65.000 0.00 0.00 0.00 3.69
106 107 1.529713 GCTAGGACGGAGGAGGAGG 60.530 68.421 0.00 0.00 0.00 4.30
107 108 1.924352 CTAGGACGGAGGAGGAGGT 59.076 63.158 0.00 0.00 0.00 3.85
108 109 0.179012 CTAGGACGGAGGAGGAGGTC 60.179 65.000 0.00 0.00 0.00 3.85
109 110 1.980784 TAGGACGGAGGAGGAGGTCG 61.981 65.000 0.00 0.00 0.00 4.79
110 111 2.829458 GACGGAGGAGGAGGTCGG 60.829 72.222 0.00 0.00 0.00 4.79
117 118 2.753043 GAGGAGGTCGGCGGTGTA 60.753 66.667 7.21 0.00 0.00 2.90
118 119 2.754658 AGGAGGTCGGCGGTGTAG 60.755 66.667 7.21 0.00 0.00 2.74
119 120 2.753043 GGAGGTCGGCGGTGTAGA 60.753 66.667 7.21 0.00 0.00 2.59
120 121 2.488820 GAGGTCGGCGGTGTAGAC 59.511 66.667 7.21 0.00 0.00 2.59
121 122 3.392595 GAGGTCGGCGGTGTAGACG 62.393 68.421 7.21 0.00 45.53 4.18
128 129 2.256158 CGGTGTAGACGCGAACCA 59.744 61.111 15.93 0.00 32.69 3.67
129 130 1.372004 CGGTGTAGACGCGAACCAA 60.372 57.895 15.93 0.00 32.69 3.67
130 131 1.342082 CGGTGTAGACGCGAACCAAG 61.342 60.000 15.93 0.00 32.69 3.61
131 132 1.012486 GGTGTAGACGCGAACCAAGG 61.012 60.000 15.93 0.00 32.69 3.61
132 133 1.012486 GTGTAGACGCGAACCAAGGG 61.012 60.000 15.93 0.00 0.00 3.95
133 134 2.098831 GTAGACGCGAACCAAGGGC 61.099 63.158 15.93 0.00 0.00 5.19
134 135 2.575893 TAGACGCGAACCAAGGGCA 61.576 57.895 15.93 0.00 0.00 5.36
135 136 2.102109 TAGACGCGAACCAAGGGCAA 62.102 55.000 15.93 0.00 0.00 4.52
136 137 2.282180 ACGCGAACCAAGGGCAAT 60.282 55.556 15.93 0.00 0.00 3.56
137 138 2.179018 CGCGAACCAAGGGCAATG 59.821 61.111 0.00 0.00 0.00 2.82
138 139 2.331893 CGCGAACCAAGGGCAATGA 61.332 57.895 0.00 0.00 0.00 2.57
139 140 1.212751 GCGAACCAAGGGCAATGAC 59.787 57.895 0.00 0.00 0.00 3.06
140 141 1.501741 CGAACCAAGGGCAATGACG 59.498 57.895 0.00 0.00 0.00 4.35
141 142 1.212751 GAACCAAGGGCAATGACGC 59.787 57.895 0.00 0.00 0.00 5.19
142 143 2.527547 GAACCAAGGGCAATGACGCG 62.528 60.000 3.53 3.53 0.00 6.01
143 144 3.814268 CCAAGGGCAATGACGCGG 61.814 66.667 12.47 0.00 0.00 6.46
144 145 2.745884 CAAGGGCAATGACGCGGA 60.746 61.111 12.47 0.00 0.00 5.54
145 146 2.114670 CAAGGGCAATGACGCGGAT 61.115 57.895 12.47 0.00 0.00 4.18
146 147 2.114670 AAGGGCAATGACGCGGATG 61.115 57.895 12.47 4.60 0.00 3.51
147 148 4.256090 GGGCAATGACGCGGATGC 62.256 66.667 12.47 14.74 38.06 3.91
158 159 2.517450 GCGGATGCGAGAAACGGAG 61.517 63.158 12.10 0.00 46.59 4.63
160 161 1.413767 CGGATGCGAGAAACGGAGTG 61.414 60.000 0.00 0.00 45.00 3.51
161 162 1.696832 GGATGCGAGAAACGGAGTGC 61.697 60.000 0.00 0.00 45.00 4.40
162 163 1.005037 ATGCGAGAAACGGAGTGCA 60.005 52.632 0.00 0.00 45.00 4.57
163 164 0.391661 ATGCGAGAAACGGAGTGCAT 60.392 50.000 0.00 0.00 45.00 3.96
164 165 1.291184 TGCGAGAAACGGAGTGCATG 61.291 55.000 0.00 0.00 45.00 4.06
165 166 1.421485 CGAGAAACGGAGTGCATGC 59.579 57.895 11.82 11.82 45.00 4.06
166 167 1.291184 CGAGAAACGGAGTGCATGCA 61.291 55.000 18.46 18.46 45.00 3.96
167 168 1.089920 GAGAAACGGAGTGCATGCAT 58.910 50.000 25.64 12.95 45.00 3.96
168 169 0.806868 AGAAACGGAGTGCATGCATG 59.193 50.000 25.64 22.70 45.00 4.06
169 170 0.804364 GAAACGGAGTGCATGCATGA 59.196 50.000 30.64 12.48 45.00 3.07
170 171 0.806868 AAACGGAGTGCATGCATGAG 59.193 50.000 30.64 17.33 45.00 2.90
171 172 1.028330 AACGGAGTGCATGCATGAGG 61.028 55.000 30.64 15.95 45.00 3.86
172 173 2.184830 CGGAGTGCATGCATGAGGG 61.185 63.158 30.64 8.90 0.00 4.30
173 174 1.826921 GGAGTGCATGCATGAGGGG 60.827 63.158 30.64 3.47 0.00 4.79
174 175 1.826921 GAGTGCATGCATGAGGGGG 60.827 63.158 30.64 2.65 0.00 5.40
175 176 2.274948 GAGTGCATGCATGAGGGGGA 62.275 60.000 30.64 0.20 0.00 4.81
176 177 1.826921 GTGCATGCATGAGGGGGAG 60.827 63.158 30.64 1.01 0.00 4.30
177 178 2.203451 GCATGCATGAGGGGGAGG 60.203 66.667 30.64 0.20 0.00 4.30
178 179 2.519441 CATGCATGAGGGGGAGGG 59.481 66.667 22.59 0.00 0.00 4.30
179 180 3.505773 ATGCATGAGGGGGAGGGC 61.506 66.667 0.00 0.00 0.00 5.19
188 189 4.777854 GGGGAGGGCGGCCAATTT 62.778 66.667 31.59 9.41 0.00 1.82
189 190 3.460868 GGGAGGGCGGCCAATTTG 61.461 66.667 31.59 0.00 0.00 2.32
190 191 3.460868 GGAGGGCGGCCAATTTGG 61.461 66.667 31.59 11.27 41.55 3.28
191 192 2.679996 GAGGGCGGCCAATTTGGT 60.680 61.111 31.59 7.16 40.46 3.67
192 193 2.203773 AGGGCGGCCAATTTGGTT 60.204 55.556 31.59 3.02 40.46 3.67
193 194 2.047370 GGGCGGCCAATTTGGTTG 60.047 61.111 25.33 10.35 40.46 3.77
194 195 2.578714 GGGCGGCCAATTTGGTTGA 61.579 57.895 25.33 0.00 40.46 3.18
195 196 1.596408 GGCGGCCAATTTGGTTGAT 59.404 52.632 15.62 0.00 40.46 2.57
196 197 0.036483 GGCGGCCAATTTGGTTGATT 60.036 50.000 15.62 0.00 40.46 2.57
197 198 1.610363 GGCGGCCAATTTGGTTGATTT 60.610 47.619 15.62 0.00 40.46 2.17
198 199 1.464219 GCGGCCAATTTGGTTGATTTG 59.536 47.619 16.62 1.38 40.46 2.32
199 200 2.869636 GCGGCCAATTTGGTTGATTTGA 60.870 45.455 16.62 0.00 40.46 2.69
200 201 3.598299 CGGCCAATTTGGTTGATTTGAT 58.402 40.909 16.62 0.00 40.46 2.57
201 202 3.618150 CGGCCAATTTGGTTGATTTGATC 59.382 43.478 16.62 0.00 40.46 2.92
202 203 4.577875 GGCCAATTTGGTTGATTTGATCA 58.422 39.130 16.62 0.00 40.46 2.92
203 204 5.002516 GGCCAATTTGGTTGATTTGATCAA 58.997 37.500 16.62 3.38 41.48 2.57
218 219 9.945904 TGATTTGATCAATTTGAATGGATTTGA 57.054 25.926 9.40 0.00 36.11 2.69
220 221 8.780846 TTTGATCAATTTGAATGGATTTGAGG 57.219 30.769 9.40 0.00 29.19 3.86
221 222 7.484993 TGATCAATTTGAATGGATTTGAGGT 57.515 32.000 2.68 0.00 29.19 3.85
222 223 7.324935 TGATCAATTTGAATGGATTTGAGGTG 58.675 34.615 2.68 0.00 29.19 4.00
223 224 6.669125 TCAATTTGAATGGATTTGAGGTGT 57.331 33.333 0.00 0.00 0.00 4.16
224 225 6.690530 TCAATTTGAATGGATTTGAGGTGTC 58.309 36.000 0.00 0.00 0.00 3.67
225 226 6.494491 TCAATTTGAATGGATTTGAGGTGTCT 59.506 34.615 0.00 0.00 0.00 3.41
226 227 5.964958 TTTGAATGGATTTGAGGTGTCTC 57.035 39.130 0.00 0.00 40.36 3.36
227 228 4.916041 TGAATGGATTTGAGGTGTCTCT 57.084 40.909 0.00 0.00 40.58 3.10
228 229 6.373005 TTGAATGGATTTGAGGTGTCTCTA 57.627 37.500 0.00 0.00 40.58 2.43
229 230 6.373005 TGAATGGATTTGAGGTGTCTCTAA 57.627 37.500 0.00 0.00 40.58 2.10
230 231 6.173339 TGAATGGATTTGAGGTGTCTCTAAC 58.827 40.000 0.00 0.00 40.58 2.34
231 232 4.553330 TGGATTTGAGGTGTCTCTAACC 57.447 45.455 0.00 0.00 40.58 2.85
232 233 3.263425 TGGATTTGAGGTGTCTCTAACCC 59.737 47.826 0.00 0.00 38.43 4.11
233 234 3.522553 GATTTGAGGTGTCTCTAACCCG 58.477 50.000 0.00 0.00 40.58 5.28
234 235 2.005370 TTGAGGTGTCTCTAACCCGT 57.995 50.000 0.00 0.00 40.58 5.28
235 236 1.542492 TGAGGTGTCTCTAACCCGTC 58.458 55.000 0.00 0.00 40.58 4.79
236 237 0.450983 GAGGTGTCTCTAACCCGTCG 59.549 60.000 0.00 0.00 38.57 5.12
237 238 0.964358 AGGTGTCTCTAACCCGTCGG 60.964 60.000 3.60 3.60 38.57 4.79
238 239 0.962356 GGTGTCTCTAACCCGTCGGA 60.962 60.000 14.39 0.00 0.00 4.55
239 240 1.101331 GTGTCTCTAACCCGTCGGAT 58.899 55.000 14.39 3.60 0.00 4.18
240 241 1.065251 GTGTCTCTAACCCGTCGGATC 59.935 57.143 14.39 0.00 0.00 3.36
241 242 1.064906 TGTCTCTAACCCGTCGGATCT 60.065 52.381 14.39 0.00 0.00 2.75
242 243 1.334243 GTCTCTAACCCGTCGGATCTG 59.666 57.143 14.39 0.00 0.00 2.90
243 244 1.211212 TCTCTAACCCGTCGGATCTGA 59.789 52.381 14.39 0.00 0.00 3.27
244 245 2.158652 TCTCTAACCCGTCGGATCTGAT 60.159 50.000 14.39 0.00 0.00 2.90
245 246 2.226912 CTCTAACCCGTCGGATCTGATC 59.773 54.545 14.39 9.18 0.00 2.92
246 247 2.158652 TCTAACCCGTCGGATCTGATCT 60.159 50.000 14.39 0.00 0.00 2.75
247 248 0.747255 AACCCGTCGGATCTGATCTG 59.253 55.000 18.43 18.43 36.99 2.90
248 249 0.106669 ACCCGTCGGATCTGATCTGA 60.107 55.000 22.16 22.16 42.18 3.27
259 260 8.370493 TCGGATCTGATCTGACATTAAAATTC 57.630 34.615 22.16 0.00 39.66 2.17
260 261 7.986889 TCGGATCTGATCTGACATTAAAATTCA 59.013 33.333 22.16 0.00 39.66 2.57
261 262 8.615211 CGGATCTGATCTGACATTAAAATTCAA 58.385 33.333 19.53 0.00 37.90 2.69
297 298 7.789273 TTTTTGTGATGCAAGATGTTCAAAT 57.211 28.000 0.00 0.00 38.47 2.32
298 299 6.772770 TTTGTGATGCAAGATGTTCAAATG 57.227 33.333 0.00 0.00 38.47 2.32
299 300 4.239304 TGTGATGCAAGATGTTCAAATGC 58.761 39.130 0.00 0.00 37.52 3.56
303 304 4.522722 TGCAAGATGTTCAAATGCATGA 57.477 36.364 0.00 0.00 41.67 3.07
304 305 5.079689 TGCAAGATGTTCAAATGCATGAT 57.920 34.783 0.00 0.00 41.67 2.45
305 306 4.867608 TGCAAGATGTTCAAATGCATGATG 59.132 37.500 0.00 2.84 41.67 3.07
306 307 4.868171 GCAAGATGTTCAAATGCATGATGT 59.132 37.500 0.00 0.00 37.00 3.06
307 308 5.350365 GCAAGATGTTCAAATGCATGATGTT 59.650 36.000 0.00 0.00 37.00 2.71
308 309 6.128391 GCAAGATGTTCAAATGCATGATGTTT 60.128 34.615 0.00 0.00 37.00 2.83
309 310 6.961359 AGATGTTCAAATGCATGATGTTTG 57.039 33.333 0.00 1.09 34.90 2.93
310 311 6.460781 AGATGTTCAAATGCATGATGTTTGT 58.539 32.000 0.00 0.00 35.09 2.83
311 312 5.908916 TGTTCAAATGCATGATGTTTGTG 57.091 34.783 0.00 0.00 35.09 3.33
312 313 4.211584 TGTTCAAATGCATGATGTTTGTGC 59.788 37.500 0.00 0.38 39.26 4.57
319 320 5.752892 TGCATGATGTTTGTGCAAAATTT 57.247 30.435 0.00 0.00 44.99 1.82
320 321 5.749620 TGCATGATGTTTGTGCAAAATTTC 58.250 33.333 0.00 0.00 44.99 2.17
321 322 5.296035 TGCATGATGTTTGTGCAAAATTTCA 59.704 32.000 0.00 0.00 44.99 2.69
322 323 6.017026 TGCATGATGTTTGTGCAAAATTTCAT 60.017 30.769 0.00 0.00 44.99 2.57
323 324 6.304445 GCATGATGTTTGTGCAAAATTTCATG 59.696 34.615 21.38 21.38 40.88 3.07
324 325 7.577107 CATGATGTTTGTGCAAAATTTCATGA 58.423 30.769 21.26 9.77 40.68 3.07
325 326 7.549615 TGATGTTTGTGCAAAATTTCATGAA 57.450 28.000 3.38 3.38 31.33 2.57
326 327 7.631822 TGATGTTTGTGCAAAATTTCATGAAG 58.368 30.769 8.41 0.00 31.33 3.02
327 328 6.981762 TGTTTGTGCAAAATTTCATGAAGT 57.018 29.167 8.41 2.46 31.33 3.01
328 329 7.375106 TGTTTGTGCAAAATTTCATGAAGTT 57.625 28.000 10.17 10.17 31.33 2.66
329 330 7.814642 TGTTTGTGCAAAATTTCATGAAGTTT 58.185 26.923 19.82 19.82 36.07 2.66
330 331 8.295288 TGTTTGTGCAAAATTTCATGAAGTTTT 58.705 25.926 26.87 26.87 39.67 2.43
339 340 8.870160 AAATTTCATGAAGTTTTGACATTCGA 57.130 26.923 19.82 0.00 27.74 3.71
340 341 8.511465 AATTTCATGAAGTTTTGACATTCGAG 57.489 30.769 10.17 0.00 0.00 4.04
341 342 5.611796 TCATGAAGTTTTGACATTCGAGG 57.388 39.130 0.00 0.00 0.00 4.63
342 343 5.304778 TCATGAAGTTTTGACATTCGAGGA 58.695 37.500 0.00 0.00 0.00 3.71
343 344 5.409520 TCATGAAGTTTTGACATTCGAGGAG 59.590 40.000 0.00 0.00 0.00 3.69
344 345 3.498397 TGAAGTTTTGACATTCGAGGAGC 59.502 43.478 0.00 0.00 0.00 4.70
345 346 3.409026 AGTTTTGACATTCGAGGAGCT 57.591 42.857 0.00 0.00 0.00 4.09
346 347 3.330267 AGTTTTGACATTCGAGGAGCTC 58.670 45.455 4.71 4.71 0.00 4.09
377 378 4.809815 AAAAACAAAATTCGGGCATGTG 57.190 36.364 0.00 0.00 0.00 3.21
378 379 3.742433 AAACAAAATTCGGGCATGTGA 57.258 38.095 0.00 0.00 0.00 3.58
379 380 3.302365 AACAAAATTCGGGCATGTGAG 57.698 42.857 0.00 0.00 0.00 3.51
380 381 2.513753 ACAAAATTCGGGCATGTGAGA 58.486 42.857 0.00 0.00 0.00 3.27
381 382 2.890311 ACAAAATTCGGGCATGTGAGAA 59.110 40.909 0.00 0.00 0.00 2.87
382 383 3.320541 ACAAAATTCGGGCATGTGAGAAA 59.679 39.130 0.00 0.00 0.00 2.52
383 384 3.575965 AAATTCGGGCATGTGAGAAAC 57.424 42.857 0.00 0.00 0.00 2.78
384 385 2.198827 ATTCGGGCATGTGAGAAACA 57.801 45.000 0.00 0.00 44.79 2.83
408 409 9.961265 ACATTTAAGAATATCAGTTCATGCATG 57.039 29.630 21.07 21.07 0.00 4.06
414 415 9.529325 AAGAATATCAGTTCATGCATGATTTTG 57.471 29.630 29.13 24.12 36.56 2.44
415 416 8.692710 AGAATATCAGTTCATGCATGATTTTGT 58.307 29.630 29.13 17.33 36.56 2.83
416 417 8.867112 AATATCAGTTCATGCATGATTTTGTC 57.133 30.769 29.13 14.87 36.56 3.18
417 418 5.970317 TCAGTTCATGCATGATTTTGTCT 57.030 34.783 29.13 16.56 36.56 3.41
418 419 6.335471 TCAGTTCATGCATGATTTTGTCTT 57.665 33.333 29.13 7.01 36.56 3.01
419 420 6.751157 TCAGTTCATGCATGATTTTGTCTTT 58.249 32.000 29.13 5.57 36.56 2.52
420 421 7.211573 TCAGTTCATGCATGATTTTGTCTTTT 58.788 30.769 29.13 4.12 36.56 2.27
421 422 7.711772 TCAGTTCATGCATGATTTTGTCTTTTT 59.288 29.630 29.13 2.79 36.56 1.94
435 436 2.904866 TTTTTGCCGCGTGCTCCT 60.905 55.556 18.14 0.00 42.00 3.69
436 437 2.903547 TTTTTGCCGCGTGCTCCTC 61.904 57.895 18.14 0.00 42.00 3.71
441 442 3.257561 CCGCGTGCTCCTCGAATG 61.258 66.667 4.92 0.00 0.00 2.67
442 443 2.507102 CGCGTGCTCCTCGAATGT 60.507 61.111 0.00 0.00 0.00 2.71
443 444 1.226575 CGCGTGCTCCTCGAATGTA 60.227 57.895 0.00 0.00 0.00 2.29
444 445 1.472276 CGCGTGCTCCTCGAATGTAC 61.472 60.000 0.00 0.00 0.00 2.90
445 446 0.457853 GCGTGCTCCTCGAATGTACA 60.458 55.000 0.00 0.00 0.00 2.90
446 447 1.990799 CGTGCTCCTCGAATGTACAA 58.009 50.000 0.00 0.00 0.00 2.41
447 448 2.540515 CGTGCTCCTCGAATGTACAAT 58.459 47.619 0.00 0.00 0.00 2.71
448 449 2.930040 CGTGCTCCTCGAATGTACAATT 59.070 45.455 0.00 0.00 0.00 2.32
449 450 3.370978 CGTGCTCCTCGAATGTACAATTT 59.629 43.478 0.00 0.00 0.00 1.82
450 451 4.492570 CGTGCTCCTCGAATGTACAATTTC 60.493 45.833 0.00 0.00 0.00 2.17
451 452 4.391830 GTGCTCCTCGAATGTACAATTTCA 59.608 41.667 0.00 0.00 0.00 2.69
452 453 5.065218 GTGCTCCTCGAATGTACAATTTCAT 59.935 40.000 0.00 0.00 0.00 2.57
453 454 6.257849 GTGCTCCTCGAATGTACAATTTCATA 59.742 38.462 0.00 0.00 0.00 2.15
454 455 6.821160 TGCTCCTCGAATGTACAATTTCATAA 59.179 34.615 0.00 0.00 0.00 1.90
455 456 7.335673 TGCTCCTCGAATGTACAATTTCATAAA 59.664 33.333 0.00 0.00 0.00 1.40
456 457 8.181573 GCTCCTCGAATGTACAATTTCATAAAA 58.818 33.333 0.00 0.00 0.00 1.52
466 467 9.249457 TGTACAATTTCATAAAATTTTGCACGA 57.751 25.926 13.76 2.07 41.96 4.35
468 469 8.986039 ACAATTTCATAAAATTTTGCACGAAC 57.014 26.923 13.76 0.00 41.96 3.95
469 470 8.607459 ACAATTTCATAAAATTTTGCACGAACA 58.393 25.926 13.76 0.00 41.96 3.18
470 471 9.596677 CAATTTCATAAAATTTTGCACGAACAT 57.403 25.926 13.76 0.00 41.96 2.71
471 472 9.810231 AATTTCATAAAATTTTGCACGAACATC 57.190 25.926 13.76 0.00 41.27 3.06
472 473 7.936950 TTCATAAAATTTTGCACGAACATCA 57.063 28.000 13.76 0.00 0.00 3.07
473 474 7.332003 TCATAAAATTTTGCACGAACATCAC 57.668 32.000 13.76 0.00 0.00 3.06
474 475 6.920210 TCATAAAATTTTGCACGAACATCACA 59.080 30.769 13.76 0.00 0.00 3.58
475 476 5.388225 AAAATTTTGCACGAACATCACAC 57.612 34.783 1.75 0.00 0.00 3.82
476 477 3.706802 ATTTTGCACGAACATCACACA 57.293 38.095 0.00 0.00 0.00 3.72
477 478 2.466870 TTTGCACGAACATCACACAC 57.533 45.000 0.00 0.00 0.00 3.82
478 479 1.373570 TTGCACGAACATCACACACA 58.626 45.000 0.00 0.00 0.00 3.72
479 480 1.592064 TGCACGAACATCACACACAT 58.408 45.000 0.00 0.00 0.00 3.21
480 481 1.263752 TGCACGAACATCACACACATG 59.736 47.619 0.00 0.00 0.00 3.21
481 482 1.954437 CACGAACATCACACACATGC 58.046 50.000 0.00 0.00 0.00 4.06
482 483 0.512518 ACGAACATCACACACATGCG 59.487 50.000 0.00 0.00 0.00 4.73
483 484 0.790495 CGAACATCACACACATGCGC 60.790 55.000 0.00 0.00 0.00 6.09
484 485 0.238025 GAACATCACACACATGCGCA 59.762 50.000 14.96 14.96 0.00 6.09
485 486 0.883153 AACATCACACACATGCGCAT 59.117 45.000 19.28 19.28 0.00 4.73
486 487 0.448990 ACATCACACACATGCGCATC 59.551 50.000 22.51 0.00 0.00 3.91
487 488 0.730840 CATCACACACATGCGCATCT 59.269 50.000 22.51 5.99 0.00 2.90
488 489 1.131693 CATCACACACATGCGCATCTT 59.868 47.619 22.51 7.67 0.00 2.40
489 490 0.518195 TCACACACATGCGCATCTTG 59.482 50.000 22.51 21.98 0.00 3.02
490 491 1.068832 CACACACATGCGCATCTTGC 61.069 55.000 22.51 0.00 40.69 4.01
491 492 1.239296 ACACACATGCGCATCTTGCT 61.239 50.000 22.51 8.57 42.25 3.91
492 493 0.109458 CACACATGCGCATCTTGCTT 60.109 50.000 22.51 2.89 42.25 3.91
493 494 0.109458 ACACATGCGCATCTTGCTTG 60.109 50.000 22.51 11.97 42.25 4.01
494 495 2.260247 ACATGCGCATCTTGCTTGT 58.740 47.368 22.51 12.73 43.37 3.16
495 496 1.130938 CACATGCGCATCTTGCTTGTA 59.869 47.619 22.51 0.00 45.47 2.41
496 497 1.811965 ACATGCGCATCTTGCTTGTAA 59.188 42.857 22.51 0.00 45.42 2.41
497 498 2.228582 ACATGCGCATCTTGCTTGTAAA 59.771 40.909 22.51 0.00 45.42 2.01
498 499 3.244156 CATGCGCATCTTGCTTGTAAAA 58.756 40.909 22.51 0.00 42.25 1.52
499 500 3.361794 TGCGCATCTTGCTTGTAAAAA 57.638 38.095 5.66 0.00 42.25 1.94
543 544 7.592012 TTTTGTAATTGCGTTACTGTTTACG 57.408 32.000 11.58 9.79 42.58 3.18
544 545 5.266756 TGTAATTGCGTTACTGTTTACGG 57.733 39.130 14.19 0.00 42.58 4.02
545 546 3.817148 AATTGCGTTACTGTTTACGGG 57.183 42.857 14.19 0.00 38.17 5.28
546 547 1.510776 TTGCGTTACTGTTTACGGGG 58.489 50.000 14.19 0.00 38.17 5.73
547 548 0.678395 TGCGTTACTGTTTACGGGGA 59.322 50.000 14.19 0.00 38.17 4.81
548 549 1.337074 TGCGTTACTGTTTACGGGGAG 60.337 52.381 14.19 0.00 38.17 4.30
549 550 1.353076 CGTTACTGTTTACGGGGAGC 58.647 55.000 7.11 0.00 34.30 4.70
550 551 1.730501 GTTACTGTTTACGGGGAGCC 58.269 55.000 0.00 0.00 0.00 4.70
551 552 1.277273 GTTACTGTTTACGGGGAGCCT 59.723 52.381 0.00 0.00 0.00 4.58
552 553 0.899720 TACTGTTTACGGGGAGCCTG 59.100 55.000 0.00 0.00 35.68 4.85
553 554 1.078426 CTGTTTACGGGGAGCCTGG 60.078 63.158 0.00 0.00 33.40 4.45
554 555 2.271173 GTTTACGGGGAGCCTGGG 59.729 66.667 0.00 0.00 33.40 4.45
555 556 3.723922 TTTACGGGGAGCCTGGGC 61.724 66.667 3.00 3.00 42.33 5.36
570 571 3.800826 GGGCACCGAAGTGGATTAT 57.199 52.632 0.00 0.00 44.69 1.28
571 572 1.594331 GGGCACCGAAGTGGATTATC 58.406 55.000 0.00 0.00 44.69 1.75
597 598 3.840666 AGAGATGCTCTAACACCCTTCAA 59.159 43.478 0.00 0.00 39.28 2.69
598 599 3.935828 GAGATGCTCTAACACCCTTCAAC 59.064 47.826 0.00 0.00 0.00 3.18
599 600 2.163818 TGCTCTAACACCCTTCAACG 57.836 50.000 0.00 0.00 0.00 4.10
659 660 7.801716 AATTTAGTCTTCTTGTGTTGCACTA 57.198 32.000 0.00 0.00 35.11 2.74
672 673 5.122554 TGTGTTGCACTAAACTTTCGAAGAA 59.877 36.000 0.00 0.00 37.13 2.52
688 689 3.723250 CGAAGAAAAACTGCATCGAGCTC 60.723 47.826 2.73 2.73 45.94 4.09
707 708 1.272490 TCCCATCTGTTGACTGTCGAC 59.728 52.381 19.16 19.16 0.00 4.20
722 723 2.604174 CGACACCGTTGCCTCCAAC 61.604 63.158 0.00 0.00 46.15 3.77
740 741 3.942439 GCCCCATCGGAGCTACCC 61.942 72.222 0.00 0.00 34.64 3.69
745 746 1.379527 CCATCGGAGCTACCCAAAAC 58.620 55.000 0.00 0.00 34.64 2.43
756 757 6.040054 GGAGCTACCCAAAACTAAGAAAACAA 59.960 38.462 0.00 0.00 0.00 2.83
760 761 6.954616 ACCCAAAACTAAGAAAACAAAACG 57.045 33.333 0.00 0.00 0.00 3.60
778 779 1.971357 ACGTGTGTCCTCATCCTCTTT 59.029 47.619 0.00 0.00 0.00 2.52
779 780 2.028930 ACGTGTGTCCTCATCCTCTTTC 60.029 50.000 0.00 0.00 0.00 2.62
788 789 0.745845 CATCCTCTTTCCCCACGCAG 60.746 60.000 0.00 0.00 0.00 5.18
818 820 3.516700 AGGCCTACAAATACTAACACCGT 59.483 43.478 1.29 0.00 0.00 4.83
840 842 1.590610 GGCACAACCACACACACACA 61.591 55.000 0.00 0.00 38.86 3.72
863 865 1.683943 CATCGGCATCCACCAATCTT 58.316 50.000 0.00 0.00 0.00 2.40
869 873 2.420129 GGCATCCACCAATCTTCTACGT 60.420 50.000 0.00 0.00 0.00 3.57
888 892 3.317149 ACGTACACTCACTAGTCAAGCAA 59.683 43.478 0.00 0.00 31.97 3.91
901 905 3.755378 AGTCAAGCAATCAAGCCTAACAG 59.245 43.478 0.00 0.00 34.23 3.16
902 906 3.084039 TCAAGCAATCAAGCCTAACAGG 58.916 45.455 0.00 0.00 38.80 4.00
903 907 2.821969 CAAGCAATCAAGCCTAACAGGT 59.178 45.455 0.00 0.00 37.80 4.00
904 908 3.160679 AGCAATCAAGCCTAACAGGTT 57.839 42.857 0.00 0.00 37.80 3.50
905 909 4.301072 AGCAATCAAGCCTAACAGGTTA 57.699 40.909 0.00 0.00 37.80 2.85
907 911 3.181496 GCAATCAAGCCTAACAGGTTAGC 60.181 47.826 12.61 8.86 40.79 3.09
948 956 6.765036 TCTTACTACTCCGATCGTTCTATGTT 59.235 38.462 15.09 0.00 0.00 2.71
969 978 5.180117 TGTTACTCTAAGCGTTCGTAACTCT 59.820 40.000 15.03 0.00 40.11 3.24
1074 1083 2.668550 GTGGTGGGCTTGTCGTCC 60.669 66.667 0.00 0.00 38.12 4.79
1097 1106 2.238395 AGGAGGCCAAGAAGAAGATCAC 59.762 50.000 5.01 0.00 0.00 3.06
1295 1304 6.404513 GGACGTAATTCTGTCTAGCTGTACTT 60.405 42.308 0.00 0.00 35.45 2.24
1353 1404 2.418628 GCATAGGTGCGTTGTGTGTTAT 59.581 45.455 0.00 0.00 42.28 1.89
1417 1468 3.692593 GTGTGTTACTGTCTGGTTGGTTT 59.307 43.478 0.00 0.00 0.00 3.27
1533 1585 5.189736 GCCCCCTTTTCTCTCCAATATTTTT 59.810 40.000 0.00 0.00 0.00 1.94
1564 1616 6.936968 AAGAGTAGGACTAAAAGACCATGT 57.063 37.500 0.00 0.00 32.35 3.21
1568 1620 4.559862 AGGACTAAAAGACCATGTCCAG 57.440 45.455 12.16 0.00 46.81 3.86
1591 1643 6.704493 CAGCAGATCCCATTTTTCCAATATTG 59.296 38.462 8.58 8.58 0.00 1.90
1598 1650 6.432472 TCCCATTTTTCCAATATTGTTTTGGC 59.568 34.615 14.25 0.00 42.79 4.52
1608 1660 6.311935 CCAATATTGTTTTGGCTGATCACAAG 59.688 38.462 14.25 0.00 37.42 3.16
1610 1662 4.998671 TTGTTTTGGCTGATCACAAGAA 57.001 36.364 0.00 0.00 0.00 2.52
1660 1856 6.487331 ACGGTAATTCGACTAGATTCTGAGAT 59.513 38.462 0.00 0.00 0.00 2.75
1671 1867 9.290988 GACTAGATTCTGAGATGATACTTGGTA 57.709 37.037 0.00 0.00 0.00 3.25
1678 1875 6.672218 TCTGAGATGATACTTGGTAAGGGAAA 59.328 38.462 0.00 0.00 0.00 3.13
1709 1906 4.184629 AGCCACACAATATTCGTCTCTTC 58.815 43.478 0.00 0.00 0.00 2.87
1823 2023 2.761786 ATGGGAAGCATGGCTACATT 57.238 45.000 0.00 0.00 38.25 2.71
1918 2118 8.239038 ACGGAATCTTCTCAGTGAAATCTATA 57.761 34.615 0.00 0.00 33.79 1.31
1952 2152 0.036765 TGACTCGGGTCCAATTTCGG 60.037 55.000 14.10 0.00 41.47 4.30
2023 2245 5.047021 CACAAGGAGGTGATTCTGACTAAGA 60.047 44.000 0.00 0.00 41.32 2.10
2121 2343 0.976641 TTCTCGATTGTCCACTGGCT 59.023 50.000 0.00 0.00 0.00 4.75
2143 2365 6.868339 GGCTAAAATATTATGGCGCTCAATTT 59.132 34.615 7.64 4.14 0.00 1.82
2170 2392 7.781324 ATGGCCTTTAATATCACCCTAAATG 57.219 36.000 3.32 0.00 0.00 2.32
2171 2393 6.074648 TGGCCTTTAATATCACCCTAAATGG 58.925 40.000 3.32 0.00 0.00 3.16
2172 2394 6.126038 TGGCCTTTAATATCACCCTAAATGGA 60.126 38.462 3.32 0.00 38.35 3.41
2173 2395 6.434340 GGCCTTTAATATCACCCTAAATGGAG 59.566 42.308 0.00 0.00 38.35 3.86
2174 2396 7.004691 GCCTTTAATATCACCCTAAATGGAGT 58.995 38.462 0.00 0.00 38.35 3.85
2175 2397 8.161425 GCCTTTAATATCACCCTAAATGGAGTA 58.839 37.037 0.00 0.00 38.35 2.59
2176 2398 9.726438 CCTTTAATATCACCCTAAATGGAGTAG 57.274 37.037 0.00 0.00 38.35 2.57
2180 2402 5.632034 ATCACCCTAAATGGAGTAGAACC 57.368 43.478 0.00 0.00 38.35 3.62
2181 2403 4.431378 TCACCCTAAATGGAGTAGAACCA 58.569 43.478 0.00 0.00 41.83 3.67
2182 2404 4.847512 TCACCCTAAATGGAGTAGAACCAA 59.152 41.667 0.00 0.00 40.93 3.67
2183 2405 5.311121 TCACCCTAAATGGAGTAGAACCAAA 59.689 40.000 0.00 0.00 40.93 3.28
2184 2406 6.011981 TCACCCTAAATGGAGTAGAACCAAAT 60.012 38.462 0.00 0.00 40.93 2.32
2185 2407 7.183112 TCACCCTAAATGGAGTAGAACCAAATA 59.817 37.037 0.00 0.00 40.93 1.40
2186 2408 7.998964 CACCCTAAATGGAGTAGAACCAAATAT 59.001 37.037 0.00 0.00 40.93 1.28
2187 2409 8.566109 ACCCTAAATGGAGTAGAACCAAATATT 58.434 33.333 0.00 0.00 40.93 1.28
2192 2414 8.888579 AATGGAGTAGAACCAAATATTACGAG 57.111 34.615 0.00 0.00 40.93 4.18
2193 2415 7.649533 TGGAGTAGAACCAAATATTACGAGA 57.350 36.000 0.00 0.00 34.25 4.04
2194 2416 7.486647 TGGAGTAGAACCAAATATTACGAGAC 58.513 38.462 0.00 0.00 34.25 3.36
2195 2417 7.123098 TGGAGTAGAACCAAATATTACGAGACA 59.877 37.037 0.00 0.00 34.25 3.41
2196 2418 8.142551 GGAGTAGAACCAAATATTACGAGACAT 58.857 37.037 0.00 0.00 0.00 3.06
2201 2423 9.193133 AGAACCAAATATTACGAGACATATTCG 57.807 33.333 0.00 0.00 43.38 3.34
2202 2424 7.884816 ACCAAATATTACGAGACATATTCGG 57.115 36.000 0.00 0.00 42.12 4.30
2203 2425 7.663827 ACCAAATATTACGAGACATATTCGGA 58.336 34.615 0.00 0.00 42.12 4.55
2204 2426 8.311836 ACCAAATATTACGAGACATATTCGGAT 58.688 33.333 0.00 0.00 42.12 4.18
2205 2427 9.797556 CCAAATATTACGAGACATATTCGGATA 57.202 33.333 0.00 0.00 42.12 2.59
2208 2430 8.975663 ATATTACGAGACATATTCGGATAGGA 57.024 34.615 1.60 0.00 42.12 2.94
2209 2431 6.738832 TTACGAGACATATTCGGATAGGAG 57.261 41.667 1.60 0.00 42.12 3.69
2210 2432 4.653868 ACGAGACATATTCGGATAGGAGT 58.346 43.478 1.60 0.00 42.12 3.85
2211 2433 5.802465 ACGAGACATATTCGGATAGGAGTA 58.198 41.667 1.60 0.00 42.12 2.59
2212 2434 6.416415 ACGAGACATATTCGGATAGGAGTAT 58.584 40.000 1.60 0.00 42.12 2.12
2213 2435 6.316640 ACGAGACATATTCGGATAGGAGTATG 59.683 42.308 1.60 4.24 42.12 2.39
2214 2436 6.458232 AGACATATTCGGATAGGAGTATGC 57.542 41.667 1.60 0.00 39.11 3.14
2215 2437 5.361285 AGACATATTCGGATAGGAGTATGCC 59.639 44.000 1.60 0.00 39.11 4.40
2216 2438 4.406003 ACATATTCGGATAGGAGTATGCCC 59.594 45.833 1.60 0.00 39.11 5.36
2217 2439 2.391926 TTCGGATAGGAGTATGCCCA 57.608 50.000 0.00 0.00 0.00 5.36
2218 2440 2.623418 TCGGATAGGAGTATGCCCAT 57.377 50.000 0.00 0.00 0.00 4.00
2219 2441 2.902608 TCGGATAGGAGTATGCCCATT 58.097 47.619 0.00 0.00 0.00 3.16
2220 2442 4.055710 TCGGATAGGAGTATGCCCATTA 57.944 45.455 0.00 0.00 0.00 1.90
2221 2443 3.767673 TCGGATAGGAGTATGCCCATTAC 59.232 47.826 0.00 0.00 0.00 1.89
2222 2444 3.769844 CGGATAGGAGTATGCCCATTACT 59.230 47.826 0.00 0.00 0.00 2.24
2223 2445 4.223032 CGGATAGGAGTATGCCCATTACTT 59.777 45.833 0.00 0.00 0.00 2.24
2224 2446 5.280011 CGGATAGGAGTATGCCCATTACTTT 60.280 44.000 0.00 0.00 0.00 2.66
2225 2447 5.940470 GGATAGGAGTATGCCCATTACTTTG 59.060 44.000 0.00 0.00 0.00 2.77
2226 2448 4.170468 AGGAGTATGCCCATTACTTTGG 57.830 45.455 0.00 0.00 36.46 3.28
2227 2449 2.623416 GGAGTATGCCCATTACTTTGGC 59.377 50.000 0.00 0.00 45.56 4.52
2228 2450 2.623416 GAGTATGCCCATTACTTTGGCC 59.377 50.000 0.00 0.00 44.72 5.36
2229 2451 2.244769 AGTATGCCCATTACTTTGGCCT 59.755 45.455 3.32 0.00 44.72 5.19
2230 2452 3.461831 AGTATGCCCATTACTTTGGCCTA 59.538 43.478 3.32 0.00 44.72 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.179018 ATGGTGAATAAGGCGAGGGC 60.179 55.000 0.00 0.00 38.90 5.19
10 11 2.368875 ACTATGGTGAATAAGGCGAGGG 59.631 50.000 0.00 0.00 0.00 4.30
11 12 3.753294 ACTATGGTGAATAAGGCGAGG 57.247 47.619 0.00 0.00 0.00 4.63
12 13 4.322049 CCCTACTATGGTGAATAAGGCGAG 60.322 50.000 0.00 0.00 0.00 5.03
13 14 3.576982 CCCTACTATGGTGAATAAGGCGA 59.423 47.826 0.00 0.00 0.00 5.54
14 15 3.576982 TCCCTACTATGGTGAATAAGGCG 59.423 47.826 0.00 0.00 0.00 5.52
15 16 4.262938 GGTCCCTACTATGGTGAATAAGGC 60.263 50.000 0.00 0.00 0.00 4.35
16 17 4.286291 GGGTCCCTACTATGGTGAATAAGG 59.714 50.000 0.00 0.00 0.00 2.69
17 18 4.286291 GGGGTCCCTACTATGGTGAATAAG 59.714 50.000 8.15 0.00 0.00 1.73
18 19 4.237018 GGGGTCCCTACTATGGTGAATAA 58.763 47.826 8.15 0.00 0.00 1.40
19 20 3.210305 TGGGGTCCCTACTATGGTGAATA 59.790 47.826 8.15 0.00 36.94 1.75
20 21 2.021441 TGGGGTCCCTACTATGGTGAAT 60.021 50.000 8.15 0.00 36.94 2.57
21 22 1.366787 TGGGGTCCCTACTATGGTGAA 59.633 52.381 8.15 0.00 36.94 3.18
22 23 1.020462 TGGGGTCCCTACTATGGTGA 58.980 55.000 8.15 0.00 36.94 4.02
23 24 1.887797 TTGGGGTCCCTACTATGGTG 58.112 55.000 8.15 0.00 36.94 4.17
24 25 2.488836 CTTTGGGGTCCCTACTATGGT 58.511 52.381 8.15 0.00 36.94 3.55
25 26 1.774856 CCTTTGGGGTCCCTACTATGG 59.225 57.143 8.15 0.00 36.94 2.74
26 27 2.771688 TCCTTTGGGGTCCCTACTATG 58.228 52.381 8.15 0.00 36.94 2.23
27 28 3.519370 TTCCTTTGGGGTCCCTACTAT 57.481 47.619 8.15 0.00 36.94 2.12
28 29 3.390819 GATTCCTTTGGGGTCCCTACTA 58.609 50.000 8.15 0.00 36.94 1.82
29 30 2.206223 GATTCCTTTGGGGTCCCTACT 58.794 52.381 8.15 0.00 36.94 2.57
30 31 1.214673 GGATTCCTTTGGGGTCCCTAC 59.785 57.143 8.15 0.00 34.17 3.18
31 32 1.603634 GGATTCCTTTGGGGTCCCTA 58.396 55.000 8.15 0.00 34.17 3.53
32 33 1.571773 CGGATTCCTTTGGGGTCCCT 61.572 60.000 8.15 0.00 35.68 4.20
33 34 1.076995 CGGATTCCTTTGGGGTCCC 60.077 63.158 0.00 0.00 35.68 4.46
34 35 1.753078 GCGGATTCCTTTGGGGTCC 60.753 63.158 0.30 0.00 35.72 4.46
35 36 1.001393 TGCGGATTCCTTTGGGGTC 60.001 57.895 0.30 0.00 36.25 4.46
36 37 1.000896 CTGCGGATTCCTTTGGGGT 60.001 57.895 0.30 0.00 36.25 4.95
37 38 0.749454 CTCTGCGGATTCCTTTGGGG 60.749 60.000 0.00 0.00 0.00 4.96
38 39 1.379642 GCTCTGCGGATTCCTTTGGG 61.380 60.000 0.00 0.00 0.00 4.12
39 40 1.379642 GGCTCTGCGGATTCCTTTGG 61.380 60.000 0.00 0.00 0.00 3.28
40 41 0.393537 AGGCTCTGCGGATTCCTTTG 60.394 55.000 9.94 0.00 0.00 2.77
41 42 0.329596 AAGGCTCTGCGGATTCCTTT 59.670 50.000 18.51 7.64 33.53 3.11
42 43 0.107459 GAAGGCTCTGCGGATTCCTT 60.107 55.000 22.27 22.27 37.18 3.36
43 44 1.524482 GAAGGCTCTGCGGATTCCT 59.476 57.895 9.94 9.94 0.00 3.36
44 45 1.524849 GGAAGGCTCTGCGGATTCC 60.525 63.158 10.01 10.01 32.37 3.01
45 46 0.531753 GAGGAAGGCTCTGCGGATTC 60.532 60.000 0.00 0.00 0.00 2.52
46 47 1.267574 TGAGGAAGGCTCTGCGGATT 61.268 55.000 0.00 0.00 0.00 3.01
47 48 1.267574 TTGAGGAAGGCTCTGCGGAT 61.268 55.000 0.00 0.00 0.00 4.18
48 49 1.267574 ATTGAGGAAGGCTCTGCGGA 61.268 55.000 0.00 0.00 0.00 5.54
49 50 1.094073 CATTGAGGAAGGCTCTGCGG 61.094 60.000 0.00 0.00 0.00 5.69
50 51 1.094073 CCATTGAGGAAGGCTCTGCG 61.094 60.000 0.00 0.00 41.22 5.18
51 52 1.382692 GCCATTGAGGAAGGCTCTGC 61.383 60.000 0.00 0.00 44.92 4.26
52 53 1.094073 CGCCATTGAGGAAGGCTCTG 61.094 60.000 0.00 0.00 46.14 3.35
53 54 1.222936 CGCCATTGAGGAAGGCTCT 59.777 57.895 0.00 0.00 46.14 4.09
54 55 2.476320 GCGCCATTGAGGAAGGCTC 61.476 63.158 0.00 0.00 46.14 4.70
55 56 2.439156 GCGCCATTGAGGAAGGCT 60.439 61.111 0.00 0.00 46.14 4.58
56 57 3.880846 CGCGCCATTGAGGAAGGC 61.881 66.667 0.00 0.00 44.89 4.35
57 58 2.125147 TCGCGCCATTGAGGAAGG 60.125 61.111 0.00 0.00 41.22 3.46
58 59 1.699656 CTGTCGCGCCATTGAGGAAG 61.700 60.000 0.00 0.00 41.22 3.46
59 60 1.741401 CTGTCGCGCCATTGAGGAA 60.741 57.895 0.00 0.00 41.22 3.36
60 61 2.125552 CTGTCGCGCCATTGAGGA 60.126 61.111 0.00 0.00 41.22 3.71
61 62 3.197790 CCTGTCGCGCCATTGAGG 61.198 66.667 0.00 0.00 41.84 3.86
62 63 1.699656 CTTCCTGTCGCGCCATTGAG 61.700 60.000 0.00 0.00 0.00 3.02
63 64 1.741401 CTTCCTGTCGCGCCATTGA 60.741 57.895 0.00 0.00 0.00 2.57
64 65 1.577328 AACTTCCTGTCGCGCCATTG 61.577 55.000 0.00 0.00 0.00 2.82
65 66 1.302511 AACTTCCTGTCGCGCCATT 60.303 52.632 0.00 0.00 0.00 3.16
66 67 2.034879 CAACTTCCTGTCGCGCCAT 61.035 57.895 0.00 0.00 0.00 4.40
67 68 2.664851 CAACTTCCTGTCGCGCCA 60.665 61.111 0.00 0.00 0.00 5.69
68 69 2.357034 TCAACTTCCTGTCGCGCC 60.357 61.111 0.00 0.00 0.00 6.53
69 70 1.891060 CTGTCAACTTCCTGTCGCGC 61.891 60.000 0.00 0.00 0.00 6.86
70 71 1.891060 GCTGTCAACTTCCTGTCGCG 61.891 60.000 0.00 0.00 0.00 5.87
71 72 0.601311 AGCTGTCAACTTCCTGTCGC 60.601 55.000 0.00 0.00 0.00 5.19
72 73 2.600731 CTAGCTGTCAACTTCCTGTCG 58.399 52.381 0.00 0.00 0.00 4.35
73 74 2.563179 TCCTAGCTGTCAACTTCCTGTC 59.437 50.000 0.00 0.00 0.00 3.51
74 75 2.300437 GTCCTAGCTGTCAACTTCCTGT 59.700 50.000 0.00 0.00 0.00 4.00
75 76 2.672478 CGTCCTAGCTGTCAACTTCCTG 60.672 54.545 0.00 0.00 0.00 3.86
76 77 1.546476 CGTCCTAGCTGTCAACTTCCT 59.454 52.381 0.00 0.00 0.00 3.36
77 78 1.404315 CCGTCCTAGCTGTCAACTTCC 60.404 57.143 0.00 0.00 0.00 3.46
78 79 1.544691 TCCGTCCTAGCTGTCAACTTC 59.455 52.381 0.00 0.00 0.00 3.01
79 80 1.546476 CTCCGTCCTAGCTGTCAACTT 59.454 52.381 0.00 0.00 0.00 2.66
80 81 1.178276 CTCCGTCCTAGCTGTCAACT 58.822 55.000 0.00 0.00 0.00 3.16
81 82 0.173708 CCTCCGTCCTAGCTGTCAAC 59.826 60.000 0.00 0.00 0.00 3.18
82 83 0.039180 TCCTCCGTCCTAGCTGTCAA 59.961 55.000 0.00 0.00 0.00 3.18
83 84 0.394488 CTCCTCCGTCCTAGCTGTCA 60.394 60.000 0.00 0.00 0.00 3.58
84 85 1.104577 CCTCCTCCGTCCTAGCTGTC 61.105 65.000 0.00 0.00 0.00 3.51
85 86 1.076632 CCTCCTCCGTCCTAGCTGT 60.077 63.158 0.00 0.00 0.00 4.40
86 87 0.821711 CTCCTCCTCCGTCCTAGCTG 60.822 65.000 0.00 0.00 0.00 4.24
87 88 1.534697 CTCCTCCTCCGTCCTAGCT 59.465 63.158 0.00 0.00 0.00 3.32
88 89 1.529713 CCTCCTCCTCCGTCCTAGC 60.530 68.421 0.00 0.00 0.00 3.42
89 90 0.179012 GACCTCCTCCTCCGTCCTAG 60.179 65.000 0.00 0.00 0.00 3.02
90 91 1.921294 GACCTCCTCCTCCGTCCTA 59.079 63.158 0.00 0.00 0.00 2.94
91 92 2.684735 GACCTCCTCCTCCGTCCT 59.315 66.667 0.00 0.00 0.00 3.85
92 93 2.829458 CGACCTCCTCCTCCGTCC 60.829 72.222 0.00 0.00 0.00 4.79
93 94 2.829458 CCGACCTCCTCCTCCGTC 60.829 72.222 0.00 0.00 0.00 4.79
100 101 2.753043 TACACCGCCGACCTCCTC 60.753 66.667 0.00 0.00 0.00 3.71
101 102 2.754658 CTACACCGCCGACCTCCT 60.755 66.667 0.00 0.00 0.00 3.69
102 103 2.753043 TCTACACCGCCGACCTCC 60.753 66.667 0.00 0.00 0.00 4.30
103 104 2.488820 GTCTACACCGCCGACCTC 59.511 66.667 0.00 0.00 0.00 3.85
104 105 3.437795 CGTCTACACCGCCGACCT 61.438 66.667 0.00 0.00 0.00 3.85
111 112 1.342082 CTTGGTTCGCGTCTACACCG 61.342 60.000 5.77 0.00 31.24 4.94
112 113 1.012486 CCTTGGTTCGCGTCTACACC 61.012 60.000 5.77 6.62 0.00 4.16
113 114 1.012486 CCCTTGGTTCGCGTCTACAC 61.012 60.000 5.77 0.00 0.00 2.90
114 115 1.290955 CCCTTGGTTCGCGTCTACA 59.709 57.895 5.77 0.00 0.00 2.74
115 116 2.098831 GCCCTTGGTTCGCGTCTAC 61.099 63.158 5.77 2.94 0.00 2.59
116 117 2.102109 TTGCCCTTGGTTCGCGTCTA 62.102 55.000 5.77 0.00 0.00 2.59
117 118 2.748058 ATTGCCCTTGGTTCGCGTCT 62.748 55.000 5.77 0.00 0.00 4.18
118 119 2.332654 ATTGCCCTTGGTTCGCGTC 61.333 57.895 5.77 0.09 0.00 5.19
119 120 2.282180 ATTGCCCTTGGTTCGCGT 60.282 55.556 5.77 0.00 0.00 6.01
120 121 2.179018 CATTGCCCTTGGTTCGCG 59.821 61.111 0.00 0.00 0.00 5.87
121 122 1.212751 GTCATTGCCCTTGGTTCGC 59.787 57.895 0.00 0.00 0.00 4.70
122 123 1.501741 CGTCATTGCCCTTGGTTCG 59.498 57.895 0.00 0.00 0.00 3.95
123 124 1.212751 GCGTCATTGCCCTTGGTTC 59.787 57.895 0.00 0.00 0.00 3.62
124 125 2.625823 CGCGTCATTGCCCTTGGTT 61.626 57.895 0.00 0.00 0.00 3.67
125 126 3.055719 CGCGTCATTGCCCTTGGT 61.056 61.111 0.00 0.00 0.00 3.67
126 127 3.814268 CCGCGTCATTGCCCTTGG 61.814 66.667 4.92 0.00 0.00 3.61
127 128 2.114670 ATCCGCGTCATTGCCCTTG 61.115 57.895 4.92 0.00 0.00 3.61
128 129 2.114670 CATCCGCGTCATTGCCCTT 61.115 57.895 4.92 0.00 0.00 3.95
129 130 2.514592 CATCCGCGTCATTGCCCT 60.515 61.111 4.92 0.00 0.00 5.19
130 131 4.256090 GCATCCGCGTCATTGCCC 62.256 66.667 4.92 0.00 0.00 5.36
140 141 2.508439 TCCGTTTCTCGCATCCGC 60.508 61.111 0.00 0.00 38.35 5.54
141 142 1.153823 ACTCCGTTTCTCGCATCCG 60.154 57.895 0.00 0.00 38.35 4.18
142 143 1.696832 GCACTCCGTTTCTCGCATCC 61.697 60.000 0.00 0.00 38.35 3.51
143 144 1.014044 TGCACTCCGTTTCTCGCATC 61.014 55.000 0.00 0.00 38.35 3.91
144 145 0.391661 ATGCACTCCGTTTCTCGCAT 60.392 50.000 0.00 0.00 38.35 4.73
145 146 1.005037 ATGCACTCCGTTTCTCGCA 60.005 52.632 0.00 0.00 38.35 5.10
146 147 1.421485 CATGCACTCCGTTTCTCGC 59.579 57.895 0.00 0.00 38.35 5.03
147 148 1.291184 TGCATGCACTCCGTTTCTCG 61.291 55.000 18.46 0.00 39.52 4.04
148 149 1.089920 ATGCATGCACTCCGTTTCTC 58.910 50.000 25.37 0.00 0.00 2.87
149 150 0.806868 CATGCATGCACTCCGTTTCT 59.193 50.000 25.37 0.00 0.00 2.52
150 151 0.804364 TCATGCATGCACTCCGTTTC 59.196 50.000 25.37 0.00 0.00 2.78
151 152 0.806868 CTCATGCATGCACTCCGTTT 59.193 50.000 25.37 1.29 0.00 3.60
152 153 1.028330 CCTCATGCATGCACTCCGTT 61.028 55.000 25.37 2.19 0.00 4.44
153 154 1.450848 CCTCATGCATGCACTCCGT 60.451 57.895 25.37 3.10 0.00 4.69
154 155 2.184830 CCCTCATGCATGCACTCCG 61.185 63.158 25.37 12.11 0.00 4.63
155 156 1.826921 CCCCTCATGCATGCACTCC 60.827 63.158 25.37 0.00 0.00 3.85
156 157 1.826921 CCCCCTCATGCATGCACTC 60.827 63.158 25.37 0.00 0.00 3.51
157 158 2.277737 CCCCCTCATGCATGCACT 59.722 61.111 25.37 9.74 0.00 4.40
158 159 1.826921 CTCCCCCTCATGCATGCAC 60.827 63.158 25.37 0.00 0.00 4.57
159 160 2.599032 CTCCCCCTCATGCATGCA 59.401 61.111 25.04 25.04 0.00 3.96
160 161 2.203451 CCTCCCCCTCATGCATGC 60.203 66.667 22.25 11.82 0.00 4.06
161 162 2.519441 CCCTCCCCCTCATGCATG 59.481 66.667 21.07 21.07 0.00 4.06
162 163 3.505773 GCCCTCCCCCTCATGCAT 61.506 66.667 0.00 0.00 0.00 3.96
171 172 4.777854 AAATTGGCCGCCCTCCCC 62.778 66.667 7.03 0.00 0.00 4.81
172 173 3.460868 CAAATTGGCCGCCCTCCC 61.461 66.667 7.03 0.00 0.00 4.30
173 174 3.460868 CCAAATTGGCCGCCCTCC 61.461 66.667 7.03 0.00 0.00 4.30
174 175 2.282783 AACCAAATTGGCCGCCCTC 61.283 57.895 12.67 0.00 42.67 4.30
175 176 2.203773 AACCAAATTGGCCGCCCT 60.204 55.556 12.67 0.00 42.67 5.19
176 177 1.898330 ATCAACCAAATTGGCCGCCC 61.898 55.000 12.67 0.00 42.67 6.13
177 178 0.036483 AATCAACCAAATTGGCCGCC 60.036 50.000 12.67 1.04 42.67 6.13
178 179 1.464219 CAAATCAACCAAATTGGCCGC 59.536 47.619 12.67 0.00 42.67 6.53
179 180 3.037431 TCAAATCAACCAAATTGGCCG 57.963 42.857 12.67 3.29 42.67 6.13
180 181 4.577875 TGATCAAATCAACCAAATTGGCC 58.422 39.130 12.67 0.00 36.09 5.36
192 193 9.945904 TCAAATCCATTCAAATTGATCAAATCA 57.054 25.926 13.09 0.00 37.55 2.57
194 195 9.391006 CCTCAAATCCATTCAAATTGATCAAAT 57.609 29.630 13.09 0.02 30.39 2.32
195 196 8.377034 ACCTCAAATCCATTCAAATTGATCAAA 58.623 29.630 13.09 0.00 30.39 2.69
196 197 7.820386 CACCTCAAATCCATTCAAATTGATCAA 59.180 33.333 11.26 11.26 30.39 2.57
197 198 7.038870 ACACCTCAAATCCATTCAAATTGATCA 60.039 33.333 0.00 0.00 30.39 2.92
198 199 7.325694 ACACCTCAAATCCATTCAAATTGATC 58.674 34.615 0.00 0.00 30.39 2.92
199 200 7.179694 AGACACCTCAAATCCATTCAAATTGAT 59.820 33.333 0.00 0.00 30.39 2.57
200 201 6.494491 AGACACCTCAAATCCATTCAAATTGA 59.506 34.615 0.00 0.00 0.00 2.57
201 202 6.694447 AGACACCTCAAATCCATTCAAATTG 58.306 36.000 0.00 0.00 0.00 2.32
202 203 6.723052 AGAGACACCTCAAATCCATTCAAATT 59.277 34.615 0.00 0.00 41.87 1.82
203 204 6.251471 AGAGACACCTCAAATCCATTCAAAT 58.749 36.000 0.00 0.00 41.87 2.32
204 205 5.634118 AGAGACACCTCAAATCCATTCAAA 58.366 37.500 0.00 0.00 41.87 2.69
205 206 5.246981 AGAGACACCTCAAATCCATTCAA 57.753 39.130 0.00 0.00 41.87 2.69
206 207 4.916041 AGAGACACCTCAAATCCATTCA 57.084 40.909 0.00 0.00 41.87 2.57
207 208 5.586643 GGTTAGAGACACCTCAAATCCATTC 59.413 44.000 0.00 0.00 41.87 2.67
208 209 5.501156 GGTTAGAGACACCTCAAATCCATT 58.499 41.667 0.00 0.00 41.87 3.16
209 210 4.080299 GGGTTAGAGACACCTCAAATCCAT 60.080 45.833 0.00 0.00 41.87 3.41
210 211 3.263425 GGGTTAGAGACACCTCAAATCCA 59.737 47.826 0.00 0.00 41.87 3.41
211 212 3.679083 CGGGTTAGAGACACCTCAAATCC 60.679 52.174 0.00 0.00 41.87 3.01
212 213 3.056035 ACGGGTTAGAGACACCTCAAATC 60.056 47.826 0.00 0.00 41.87 2.17
213 214 2.904434 ACGGGTTAGAGACACCTCAAAT 59.096 45.455 0.00 0.00 41.87 2.32
214 215 2.298163 GACGGGTTAGAGACACCTCAAA 59.702 50.000 0.00 0.00 41.87 2.69
215 216 1.891150 GACGGGTTAGAGACACCTCAA 59.109 52.381 0.00 0.00 41.87 3.02
216 217 1.542492 GACGGGTTAGAGACACCTCA 58.458 55.000 0.00 0.00 41.87 3.86
217 218 0.450983 CGACGGGTTAGAGACACCTC 59.549 60.000 0.00 0.00 39.72 3.85
218 219 0.964358 CCGACGGGTTAGAGACACCT 60.964 60.000 5.81 0.00 34.36 4.00
219 220 0.962356 TCCGACGGGTTAGAGACACC 60.962 60.000 15.25 0.00 33.83 4.16
220 221 1.065251 GATCCGACGGGTTAGAGACAC 59.935 57.143 15.25 0.00 33.83 3.67
221 222 1.064906 AGATCCGACGGGTTAGAGACA 60.065 52.381 15.25 0.00 33.83 3.41
222 223 1.334243 CAGATCCGACGGGTTAGAGAC 59.666 57.143 15.25 0.00 33.83 3.36
223 224 1.211212 TCAGATCCGACGGGTTAGAGA 59.789 52.381 15.25 0.79 33.83 3.10
224 225 1.676746 TCAGATCCGACGGGTTAGAG 58.323 55.000 15.25 0.00 33.83 2.43
225 226 2.158652 AGATCAGATCCGACGGGTTAGA 60.159 50.000 15.25 9.49 33.83 2.10
226 227 2.030717 CAGATCAGATCCGACGGGTTAG 60.031 54.545 15.25 3.58 33.83 2.34
227 228 1.954382 CAGATCAGATCCGACGGGTTA 59.046 52.381 15.25 0.00 33.83 2.85
228 229 0.747255 CAGATCAGATCCGACGGGTT 59.253 55.000 15.25 1.44 33.83 4.11
229 230 0.106669 TCAGATCAGATCCGACGGGT 60.107 55.000 15.25 6.74 33.83 5.28
230 231 0.312416 GTCAGATCAGATCCGACGGG 59.688 60.000 15.25 0.00 28.17 5.28
231 232 1.025041 TGTCAGATCAGATCCGACGG 58.975 55.000 18.18 7.84 39.09 4.79
232 233 3.361794 AATGTCAGATCAGATCCGACG 57.638 47.619 18.18 2.34 39.09 5.12
233 234 7.721286 ATTTTAATGTCAGATCAGATCCGAC 57.279 36.000 17.04 17.04 37.25 4.79
234 235 7.986889 TGAATTTTAATGTCAGATCAGATCCGA 59.013 33.333 6.80 0.00 0.00 4.55
235 236 8.146479 TGAATTTTAATGTCAGATCAGATCCG 57.854 34.615 6.80 0.00 0.00 4.18
273 274 7.631822 CATTTGAACATCTTGCATCACAAAAA 58.368 30.769 0.00 0.00 37.96 1.94
274 275 6.292973 GCATTTGAACATCTTGCATCACAAAA 60.293 34.615 0.00 0.00 37.96 2.44
275 276 5.177881 GCATTTGAACATCTTGCATCACAAA 59.822 36.000 0.00 0.00 37.96 2.83
276 277 4.687018 GCATTTGAACATCTTGCATCACAA 59.313 37.500 0.00 0.00 36.62 3.33
277 278 4.239304 GCATTTGAACATCTTGCATCACA 58.761 39.130 0.00 0.00 33.58 3.58
278 279 4.239304 TGCATTTGAACATCTTGCATCAC 58.761 39.130 0.00 0.00 38.32 3.06
279 280 4.522722 TGCATTTGAACATCTTGCATCA 57.477 36.364 0.00 0.00 38.32 3.07
282 283 4.522722 TCATGCATTTGAACATCTTGCA 57.477 36.364 0.00 0.00 46.22 4.08
283 284 4.868171 ACATCATGCATTTGAACATCTTGC 59.132 37.500 12.25 0.00 0.00 4.01
284 285 6.961359 AACATCATGCATTTGAACATCTTG 57.039 33.333 12.25 0.27 0.00 3.02
285 286 6.932400 ACAAACATCATGCATTTGAACATCTT 59.068 30.769 14.87 0.00 36.91 2.40
286 287 6.367695 CACAAACATCATGCATTTGAACATCT 59.632 34.615 14.87 0.00 36.91 2.90
287 288 6.530567 CACAAACATCATGCATTTGAACATC 58.469 36.000 14.87 0.00 36.91 3.06
288 289 5.106869 GCACAAACATCATGCATTTGAACAT 60.107 36.000 14.87 0.00 39.23 2.71
289 290 4.211584 GCACAAACATCATGCATTTGAACA 59.788 37.500 14.87 0.00 39.23 3.18
290 291 4.211584 TGCACAAACATCATGCATTTGAAC 59.788 37.500 14.87 7.81 44.17 3.18
291 292 4.377897 TGCACAAACATCATGCATTTGAA 58.622 34.783 14.87 0.36 44.17 2.69
292 293 3.991367 TGCACAAACATCATGCATTTGA 58.009 36.364 14.87 4.66 44.17 2.69
298 299 5.749620 TGAAATTTTGCACAAACATCATGC 58.250 33.333 0.00 0.00 39.88 4.06
299 300 7.577107 TCATGAAATTTTGCACAAACATCATG 58.423 30.769 23.12 23.12 40.94 3.07
300 301 7.731882 TCATGAAATTTTGCACAAACATCAT 57.268 28.000 0.00 9.78 32.26 2.45
301 302 7.280428 ACTTCATGAAATTTTGCACAAACATCA 59.720 29.630 9.88 1.94 0.00 3.07
302 303 7.632721 ACTTCATGAAATTTTGCACAAACATC 58.367 30.769 9.88 0.00 0.00 3.06
303 304 7.556733 ACTTCATGAAATTTTGCACAAACAT 57.443 28.000 9.88 0.00 0.00 2.71
304 305 6.981762 ACTTCATGAAATTTTGCACAAACA 57.018 29.167 9.88 0.00 0.00 2.83
305 306 8.577110 CAAAACTTCATGAAATTTTGCACAAAC 58.423 29.630 30.72 0.00 35.81 2.93
306 307 8.509690 TCAAAACTTCATGAAATTTTGCACAAA 58.490 25.926 34.07 21.85 40.33 2.83
307 308 7.961827 GTCAAAACTTCATGAAATTTTGCACAA 59.038 29.630 34.07 22.12 40.33 3.33
308 309 7.118825 TGTCAAAACTTCATGAAATTTTGCACA 59.881 29.630 34.07 31.82 40.33 4.57
309 310 7.462731 TGTCAAAACTTCATGAAATTTTGCAC 58.537 30.769 34.07 30.47 40.33 4.57
310 311 7.606858 TGTCAAAACTTCATGAAATTTTGCA 57.393 28.000 34.07 30.77 40.33 4.08
311 312 9.161684 GAATGTCAAAACTTCATGAAATTTTGC 57.838 29.630 34.07 29.34 40.33 3.68
312 313 9.360514 CGAATGTCAAAACTTCATGAAATTTTG 57.639 29.630 33.52 33.52 41.35 2.44
313 314 9.311916 TCGAATGTCAAAACTTCATGAAATTTT 57.688 25.926 19.08 19.08 34.43 1.82
314 315 8.870160 TCGAATGTCAAAACTTCATGAAATTT 57.130 26.923 9.00 9.00 34.43 1.82
315 316 7.596248 CCTCGAATGTCAAAACTTCATGAAATT 59.404 33.333 9.88 2.42 36.45 1.82
316 317 7.040478 TCCTCGAATGTCAAAACTTCATGAAAT 60.040 33.333 9.88 0.00 0.00 2.17
317 318 6.262049 TCCTCGAATGTCAAAACTTCATGAAA 59.738 34.615 9.88 0.00 0.00 2.69
318 319 5.762711 TCCTCGAATGTCAAAACTTCATGAA 59.237 36.000 8.12 8.12 0.00 2.57
319 320 5.304778 TCCTCGAATGTCAAAACTTCATGA 58.695 37.500 0.00 0.00 0.00 3.07
320 321 5.611796 TCCTCGAATGTCAAAACTTCATG 57.388 39.130 0.00 0.00 0.00 3.07
321 322 4.154918 GCTCCTCGAATGTCAAAACTTCAT 59.845 41.667 0.00 0.00 0.00 2.57
322 323 3.498397 GCTCCTCGAATGTCAAAACTTCA 59.502 43.478 0.00 0.00 0.00 3.02
323 324 3.748568 AGCTCCTCGAATGTCAAAACTTC 59.251 43.478 0.00 0.00 0.00 3.01
324 325 3.744660 AGCTCCTCGAATGTCAAAACTT 58.255 40.909 0.00 0.00 0.00 2.66
325 326 3.330267 GAGCTCCTCGAATGTCAAAACT 58.670 45.455 0.87 0.00 0.00 2.66
326 327 3.731274 GAGCTCCTCGAATGTCAAAAC 57.269 47.619 0.87 0.00 0.00 2.43
338 339 2.781595 TTTTCCGCCACGAGCTCCTC 62.782 60.000 8.47 0.00 40.39 3.71
339 340 2.391724 TTTTTCCGCCACGAGCTCCT 62.392 55.000 8.47 0.00 40.39 3.69
340 341 1.964373 TTTTTCCGCCACGAGCTCC 60.964 57.895 8.47 0.00 40.39 4.70
341 342 3.650369 TTTTTCCGCCACGAGCTC 58.350 55.556 2.73 2.73 40.39 4.09
356 357 4.446371 TCACATGCCCGAATTTTGTTTTT 58.554 34.783 0.00 0.00 0.00 1.94
357 358 4.057432 CTCACATGCCCGAATTTTGTTTT 58.943 39.130 0.00 0.00 0.00 2.43
358 359 3.320541 TCTCACATGCCCGAATTTTGTTT 59.679 39.130 0.00 0.00 0.00 2.83
359 360 2.890311 TCTCACATGCCCGAATTTTGTT 59.110 40.909 0.00 0.00 0.00 2.83
360 361 2.513753 TCTCACATGCCCGAATTTTGT 58.486 42.857 0.00 0.00 0.00 2.83
361 362 3.574284 TTCTCACATGCCCGAATTTTG 57.426 42.857 0.00 0.00 0.00 2.44
362 363 3.320541 TGTTTCTCACATGCCCGAATTTT 59.679 39.130 0.00 0.00 0.00 1.82
363 364 2.890311 TGTTTCTCACATGCCCGAATTT 59.110 40.909 0.00 0.00 0.00 1.82
364 365 2.513753 TGTTTCTCACATGCCCGAATT 58.486 42.857 0.00 0.00 0.00 2.17
365 366 2.198827 TGTTTCTCACATGCCCGAAT 57.801 45.000 0.00 0.00 0.00 3.34
366 367 2.198827 ATGTTTCTCACATGCCCGAA 57.801 45.000 0.00 0.00 45.12 4.30
367 368 2.198827 AATGTTTCTCACATGCCCGA 57.801 45.000 0.00 0.00 46.23 5.14
368 369 4.155826 TCTTAAATGTTTCTCACATGCCCG 59.844 41.667 0.00 0.00 46.23 6.13
369 370 5.643379 TCTTAAATGTTTCTCACATGCCC 57.357 39.130 0.00 0.00 46.23 5.36
370 371 9.455847 GATATTCTTAAATGTTTCTCACATGCC 57.544 33.333 0.00 0.00 46.23 4.40
382 383 9.961265 CATGCATGAACTGATATTCTTAAATGT 57.039 29.630 22.59 0.00 0.00 2.71
388 389 9.529325 CAAAATCATGCATGAACTGATATTCTT 57.471 29.630 31.79 15.14 40.69 2.52
389 390 8.692710 ACAAAATCATGCATGAACTGATATTCT 58.307 29.630 31.79 9.78 40.69 2.40
390 391 8.867112 ACAAAATCATGCATGAACTGATATTC 57.133 30.769 31.79 0.00 40.69 1.75
391 392 8.692710 AGACAAAATCATGCATGAACTGATATT 58.307 29.630 31.79 17.25 40.69 1.28
392 393 8.234136 AGACAAAATCATGCATGAACTGATAT 57.766 30.769 31.79 12.05 40.69 1.63
393 394 7.634671 AGACAAAATCATGCATGAACTGATA 57.365 32.000 31.79 8.99 40.69 2.15
394 395 6.525578 AGACAAAATCATGCATGAACTGAT 57.474 33.333 31.79 17.90 40.69 2.90
395 396 5.970317 AGACAAAATCATGCATGAACTGA 57.030 34.783 31.79 11.63 40.69 3.41
396 397 7.416154 AAAAGACAAAATCATGCATGAACTG 57.584 32.000 31.79 27.00 40.69 3.16
424 425 2.607668 TACATTCGAGGAGCACGCGG 62.608 60.000 12.47 0.00 42.95 6.46
425 426 1.226575 TACATTCGAGGAGCACGCG 60.227 57.895 3.53 3.53 44.16 6.01
426 427 0.457853 TGTACATTCGAGGAGCACGC 60.458 55.000 0.00 0.00 0.00 5.34
427 428 1.990799 TTGTACATTCGAGGAGCACG 58.009 50.000 0.00 0.00 0.00 5.34
428 429 4.391830 TGAAATTGTACATTCGAGGAGCAC 59.608 41.667 0.00 0.00 0.00 4.40
429 430 4.574892 TGAAATTGTACATTCGAGGAGCA 58.425 39.130 0.00 0.00 0.00 4.26
430 431 5.741388 ATGAAATTGTACATTCGAGGAGC 57.259 39.130 0.00 0.00 0.00 4.70
440 441 9.249457 TCGTGCAAAATTTTATGAAATTGTACA 57.751 25.926 8.78 2.34 42.97 2.90
443 444 8.607459 TGTTCGTGCAAAATTTTATGAAATTGT 58.393 25.926 8.78 0.97 42.97 2.71
444 445 8.984482 TGTTCGTGCAAAATTTTATGAAATTG 57.016 26.923 8.78 1.20 42.97 2.32
445 446 9.810231 GATGTTCGTGCAAAATTTTATGAAATT 57.190 25.926 2.44 2.50 45.06 1.82
446 447 8.986847 TGATGTTCGTGCAAAATTTTATGAAAT 58.013 25.926 2.44 3.94 37.06 2.17
447 448 8.272176 GTGATGTTCGTGCAAAATTTTATGAAA 58.728 29.630 2.44 0.00 0.00 2.69
448 449 7.436376 TGTGATGTTCGTGCAAAATTTTATGAA 59.564 29.630 2.44 3.89 0.00 2.57
449 450 6.920210 TGTGATGTTCGTGCAAAATTTTATGA 59.080 30.769 2.44 0.00 0.00 2.15
450 451 7.003072 GTGTGATGTTCGTGCAAAATTTTATG 58.997 34.615 2.44 0.00 0.00 1.90
451 452 6.699204 TGTGTGATGTTCGTGCAAAATTTTAT 59.301 30.769 2.44 0.00 0.00 1.40
452 453 6.020281 GTGTGTGATGTTCGTGCAAAATTTTA 60.020 34.615 2.44 0.00 0.00 1.52
453 454 4.867047 TGTGTGATGTTCGTGCAAAATTTT 59.133 33.333 0.00 0.00 0.00 1.82
454 455 4.267452 GTGTGTGATGTTCGTGCAAAATTT 59.733 37.500 0.00 0.00 0.00 1.82
455 456 3.796178 GTGTGTGATGTTCGTGCAAAATT 59.204 39.130 0.00 0.00 0.00 1.82
456 457 3.181492 TGTGTGTGATGTTCGTGCAAAAT 60.181 39.130 0.00 0.00 0.00 1.82
457 458 2.162408 TGTGTGTGATGTTCGTGCAAAA 59.838 40.909 0.00 0.00 0.00 2.44
458 459 1.740025 TGTGTGTGATGTTCGTGCAAA 59.260 42.857 0.00 0.00 0.00 3.68
459 460 1.373570 TGTGTGTGATGTTCGTGCAA 58.626 45.000 0.00 0.00 0.00 4.08
460 461 1.263752 CATGTGTGTGATGTTCGTGCA 59.736 47.619 0.00 0.00 0.00 4.57
461 462 1.954437 CATGTGTGTGATGTTCGTGC 58.046 50.000 0.00 0.00 0.00 5.34
462 463 1.722435 CGCATGTGTGTGATGTTCGTG 60.722 52.381 0.00 0.00 38.10 4.35
463 464 0.512518 CGCATGTGTGTGATGTTCGT 59.487 50.000 0.00 0.00 38.10 3.85
464 465 0.790495 GCGCATGTGTGTGATGTTCG 60.790 55.000 0.30 0.00 38.10 3.95
465 466 0.238025 TGCGCATGTGTGTGATGTTC 59.762 50.000 5.66 0.00 38.10 3.18
466 467 0.883153 ATGCGCATGTGTGTGATGTT 59.117 45.000 24.69 0.00 38.10 2.71
467 468 0.448990 GATGCGCATGTGTGTGATGT 59.551 50.000 30.76 0.00 38.10 3.06
468 469 0.730840 AGATGCGCATGTGTGTGATG 59.269 50.000 30.76 0.00 38.10 3.07
469 470 1.131693 CAAGATGCGCATGTGTGTGAT 59.868 47.619 30.76 4.15 38.10 3.06
470 471 0.518195 CAAGATGCGCATGTGTGTGA 59.482 50.000 30.76 0.00 38.10 3.58
471 472 1.068832 GCAAGATGCGCATGTGTGTG 61.069 55.000 30.76 19.82 38.87 3.82
472 473 1.210931 GCAAGATGCGCATGTGTGT 59.789 52.632 30.76 5.91 31.71 3.72
473 474 4.066769 GCAAGATGCGCATGTGTG 57.933 55.556 30.76 22.97 31.71 3.82
518 519 7.165483 CCGTAAACAGTAACGCAATTACAAAAA 59.835 33.333 9.79 0.00 45.00 1.94
519 520 6.632035 CCGTAAACAGTAACGCAATTACAAAA 59.368 34.615 9.79 0.00 45.00 2.44
520 521 6.134730 CCGTAAACAGTAACGCAATTACAAA 58.865 36.000 9.79 0.00 45.00 2.83
521 522 5.333952 CCCGTAAACAGTAACGCAATTACAA 60.334 40.000 9.79 0.00 45.00 2.41
522 523 4.152045 CCCGTAAACAGTAACGCAATTACA 59.848 41.667 9.79 0.00 45.00 2.41
523 524 4.435917 CCCCGTAAACAGTAACGCAATTAC 60.436 45.833 3.36 0.53 43.20 1.89
524 525 3.683822 CCCCGTAAACAGTAACGCAATTA 59.316 43.478 3.36 0.00 37.78 1.40
525 526 2.485038 CCCCGTAAACAGTAACGCAATT 59.515 45.455 3.36 0.00 37.78 2.32
526 527 2.078392 CCCCGTAAACAGTAACGCAAT 58.922 47.619 3.36 0.00 37.78 3.56
527 528 1.069823 TCCCCGTAAACAGTAACGCAA 59.930 47.619 3.36 0.00 37.78 4.85
528 529 0.678395 TCCCCGTAAACAGTAACGCA 59.322 50.000 3.36 0.00 37.78 5.24
529 530 1.353076 CTCCCCGTAAACAGTAACGC 58.647 55.000 3.36 0.00 37.78 4.84
530 531 1.353076 GCTCCCCGTAAACAGTAACG 58.647 55.000 2.10 2.10 38.80 3.18
531 532 1.277273 AGGCTCCCCGTAAACAGTAAC 59.723 52.381 0.00 0.00 35.76 2.50
532 533 1.276989 CAGGCTCCCCGTAAACAGTAA 59.723 52.381 0.00 0.00 35.76 2.24
533 534 0.899720 CAGGCTCCCCGTAAACAGTA 59.100 55.000 0.00 0.00 35.76 2.74
534 535 1.677552 CAGGCTCCCCGTAAACAGT 59.322 57.895 0.00 0.00 35.76 3.55
535 536 1.078426 CCAGGCTCCCCGTAAACAG 60.078 63.158 0.00 0.00 35.76 3.16
536 537 2.598787 CCCAGGCTCCCCGTAAACA 61.599 63.158 0.00 0.00 35.76 2.83
537 538 2.271173 CCCAGGCTCCCCGTAAAC 59.729 66.667 0.00 0.00 35.76 2.01
538 539 3.723922 GCCCAGGCTCCCCGTAAA 61.724 66.667 0.08 0.00 38.26 2.01
546 547 4.021925 ACTTCGGTGCCCAGGCTC 62.022 66.667 10.58 6.18 42.51 4.70
547 548 4.335647 CACTTCGGTGCCCAGGCT 62.336 66.667 10.58 0.00 42.51 4.58
549 550 2.484287 AATCCACTTCGGTGCCCAGG 62.484 60.000 0.00 0.00 44.05 4.45
550 551 0.251916 TAATCCACTTCGGTGCCCAG 59.748 55.000 0.00 0.00 44.05 4.45
551 552 0.916086 ATAATCCACTTCGGTGCCCA 59.084 50.000 0.00 0.00 44.05 5.36
552 553 1.594331 GATAATCCACTTCGGTGCCC 58.406 55.000 0.00 0.00 44.05 5.36
553 554 1.217882 CGATAATCCACTTCGGTGCC 58.782 55.000 0.00 0.00 44.05 5.01
554 555 1.935933 ACGATAATCCACTTCGGTGC 58.064 50.000 0.00 0.00 44.05 5.01
555 556 4.928601 TCTAACGATAATCCACTTCGGTG 58.071 43.478 0.00 0.00 44.92 4.94
556 557 4.885907 TCTCTAACGATAATCCACTTCGGT 59.114 41.667 0.00 0.00 37.20 4.69
557 558 5.434352 TCTCTAACGATAATCCACTTCGG 57.566 43.478 0.00 0.00 37.20 4.30
558 559 5.343593 GCATCTCTAACGATAATCCACTTCG 59.656 44.000 0.00 0.00 38.76 3.79
559 560 6.451393 AGCATCTCTAACGATAATCCACTTC 58.549 40.000 0.00 0.00 0.00 3.01
560 561 6.412362 AGCATCTCTAACGATAATCCACTT 57.588 37.500 0.00 0.00 0.00 3.16
561 562 6.019779 GAGCATCTCTAACGATAATCCACT 57.980 41.667 0.00 0.00 0.00 4.00
639 640 6.346096 AGTTTAGTGCAACACAAGAAGACTA 58.654 36.000 0.00 0.00 41.43 2.59
659 660 5.455525 CGATGCAGTTTTTCTTCGAAAGTTT 59.544 36.000 0.00 0.00 33.47 2.66
672 673 0.036732 TGGGAGCTCGATGCAGTTTT 59.963 50.000 7.83 0.00 45.94 2.43
688 689 1.000843 TGTCGACAGTCAACAGATGGG 59.999 52.381 15.76 0.00 0.00 4.00
722 723 4.301027 GGTAGCTCCGATGGGGCG 62.301 72.222 1.32 0.00 35.43 6.13
740 741 7.779349 ACACACGTTTTGTTTTCTTAGTTTTG 58.221 30.769 0.00 0.00 35.67 2.44
745 746 5.875930 AGGACACACGTTTTGTTTTCTTAG 58.124 37.500 1.21 0.00 35.67 2.18
756 757 1.971357 AGAGGATGAGGACACACGTTT 59.029 47.619 0.00 0.00 0.00 3.60
760 761 2.355209 GGGAAAGAGGATGAGGACACAC 60.355 54.545 0.00 0.00 0.00 3.82
818 820 1.340114 TGTGTGTGTGGTTGTGCCTTA 60.340 47.619 0.00 0.00 38.35 2.69
829 831 0.304401 CGATGGTGTGTGTGTGTGTG 59.696 55.000 0.00 0.00 0.00 3.82
830 832 0.813610 CCGATGGTGTGTGTGTGTGT 60.814 55.000 0.00 0.00 0.00 3.72
831 833 1.941072 CCGATGGTGTGTGTGTGTG 59.059 57.895 0.00 0.00 0.00 3.82
832 834 1.891919 GCCGATGGTGTGTGTGTGT 60.892 57.895 0.00 0.00 0.00 3.72
840 842 2.135903 TTGGTGGATGCCGATGGTGT 62.136 55.000 0.00 0.00 0.00 4.16
863 865 4.391216 GCTTGACTAGTGAGTGTACGTAGA 59.609 45.833 0.00 0.00 35.45 2.59
869 873 5.722021 TGATTGCTTGACTAGTGAGTGTA 57.278 39.130 0.00 0.00 35.45 2.90
888 892 5.604650 AGATAGCTAACCTGTTAGGCTTGAT 59.395 40.000 16.52 7.44 42.02 2.57
907 911 8.621532 AGTAGTAAGAGATGAAGCTGAGATAG 57.378 38.462 0.00 0.00 0.00 2.08
920 928 5.613329 AGAACGATCGGAGTAGTAAGAGAT 58.387 41.667 20.98 0.00 0.00 2.75
969 978 2.285083 CAACACAAGAGAACCGGTCAA 58.715 47.619 8.04 0.00 0.00 3.18
1026 1035 2.501223 AATTCTTCTCGGCGCCGACA 62.501 55.000 45.37 34.92 44.01 4.35
1066 1075 3.379445 GGCCTCCTCGGACGACAA 61.379 66.667 0.00 0.00 33.16 3.18
1074 1083 0.898320 TCTTCTTCTTGGCCTCCTCG 59.102 55.000 3.32 0.00 0.00 4.63
1097 1106 3.114616 CGTCCGGCTTGTGCTCTG 61.115 66.667 0.00 0.00 39.59 3.35
1295 1304 1.877637 ATCAGTACACACGCTTGCAA 58.122 45.000 0.00 0.00 0.00 4.08
1341 1392 8.120465 AGAAGTAAAAGACAATAACACACAACG 58.880 33.333 0.00 0.00 0.00 4.10
1417 1468 1.056660 GGGGTCTGACTTGTTCCAGA 58.943 55.000 7.85 0.00 37.11 3.86
1542 1594 5.422650 GGACATGGTCTTTTAGTCCTACTCT 59.577 44.000 0.00 0.00 44.10 3.24
1557 1609 0.179034 GGGATCTGCTGGACATGGTC 60.179 60.000 0.00 0.00 0.00 4.02
1558 1610 0.915872 TGGGATCTGCTGGACATGGT 60.916 55.000 0.00 0.00 0.00 3.55
1564 1616 2.042842 TGGAAAAATGGGATCTGCTGGA 59.957 45.455 0.00 0.00 0.00 3.86
1568 1620 6.585416 ACAATATTGGAAAAATGGGATCTGC 58.415 36.000 19.37 0.00 0.00 4.26
1610 1662 5.502089 TCAATGATGGATTTGGGCTTTTT 57.498 34.783 0.00 0.00 0.00 1.94
1614 1666 4.621274 CGTTTTCAATGATGGATTTGGGCT 60.621 41.667 0.00 0.00 0.00 5.19
1615 1667 3.618150 CGTTTTCAATGATGGATTTGGGC 59.382 43.478 0.00 0.00 0.00 5.36
1623 1817 5.737290 GTCGAATTACCGTTTTCAATGATGG 59.263 40.000 0.00 0.00 0.00 3.51
1660 1856 5.073965 AGGTGTTTTCCCTTACCAAGTATCA 59.926 40.000 0.00 0.00 35.66 2.15
1671 1867 2.963101 GTGGCTAAAGGTGTTTTCCCTT 59.037 45.455 0.00 0.00 44.20 3.95
1678 1875 5.106317 CGAATATTGTGTGGCTAAAGGTGTT 60.106 40.000 0.00 0.00 0.00 3.32
1709 1906 7.385205 AGCCTCTTTATGCTGTACAATATTACG 59.615 37.037 0.00 0.00 36.23 3.18
1803 2003 3.882102 AATGTAGCCATGCTTCCCATA 57.118 42.857 0.00 0.00 40.44 2.74
1823 2023 1.606668 GTCCATCAACTTTCGCACCAA 59.393 47.619 0.00 0.00 0.00 3.67
1918 2118 8.095169 GGACCCGAGTCAATTAAATCTACATAT 58.905 37.037 0.00 0.00 45.48 1.78
1939 2139 2.032680 TCGATTCCGAAATTGGACCC 57.967 50.000 0.00 0.00 42.51 4.46
2023 2245 5.067283 CCCAATTACGCTTTGCTAGGTTATT 59.933 40.000 0.00 0.00 0.00 1.40
2031 2253 1.463674 CCTCCCAATTACGCTTTGCT 58.536 50.000 0.00 0.00 0.00 3.91
2166 2388 9.326413 CTCGTAATATTTGGTTCTACTCCATTT 57.674 33.333 0.00 0.00 34.75 2.32
2167 2389 8.701895 TCTCGTAATATTTGGTTCTACTCCATT 58.298 33.333 0.00 0.00 34.75 3.16
2168 2390 8.142551 GTCTCGTAATATTTGGTTCTACTCCAT 58.857 37.037 0.00 0.00 34.75 3.41
2169 2391 7.123098 TGTCTCGTAATATTTGGTTCTACTCCA 59.877 37.037 0.00 0.00 0.00 3.86
2170 2392 7.486647 TGTCTCGTAATATTTGGTTCTACTCC 58.513 38.462 0.00 0.00 0.00 3.85
2175 2397 9.193133 CGAATATGTCTCGTAATATTTGGTTCT 57.807 33.333 0.00 0.00 30.83 3.01
2176 2398 8.433126 CCGAATATGTCTCGTAATATTTGGTTC 58.567 37.037 11.28 0.00 41.50 3.62
2177 2399 8.145767 TCCGAATATGTCTCGTAATATTTGGTT 58.854 33.333 16.14 0.00 44.22 3.67
2178 2400 7.663827 TCCGAATATGTCTCGTAATATTTGGT 58.336 34.615 16.14 0.00 44.22 3.67
2179 2401 8.703604 ATCCGAATATGTCTCGTAATATTTGG 57.296 34.615 12.59 12.59 44.73 3.28
2182 2404 9.404848 TCCTATCCGAATATGTCTCGTAATATT 57.595 33.333 0.00 0.00 34.46 1.28
2183 2405 8.975663 TCCTATCCGAATATGTCTCGTAATAT 57.024 34.615 0.00 0.00 34.46 1.28
2184 2406 8.045507 ACTCCTATCCGAATATGTCTCGTAATA 58.954 37.037 0.00 0.00 34.46 0.98
2185 2407 6.885376 ACTCCTATCCGAATATGTCTCGTAAT 59.115 38.462 0.00 0.00 34.46 1.89
2186 2408 6.236409 ACTCCTATCCGAATATGTCTCGTAA 58.764 40.000 0.00 0.00 34.46 3.18
2187 2409 5.802465 ACTCCTATCCGAATATGTCTCGTA 58.198 41.667 0.00 0.00 34.46 3.43
2188 2410 4.653868 ACTCCTATCCGAATATGTCTCGT 58.346 43.478 0.00 0.00 34.46 4.18
2189 2411 6.720343 CATACTCCTATCCGAATATGTCTCG 58.280 44.000 0.00 0.00 36.06 4.04
2190 2412 6.460399 GGCATACTCCTATCCGAATATGTCTC 60.460 46.154 0.00 0.00 0.00 3.36
2191 2413 5.361285 GGCATACTCCTATCCGAATATGTCT 59.639 44.000 0.00 0.00 0.00 3.41
2192 2414 5.452077 GGGCATACTCCTATCCGAATATGTC 60.452 48.000 0.00 0.00 0.00 3.06
2193 2415 4.406003 GGGCATACTCCTATCCGAATATGT 59.594 45.833 0.00 0.00 0.00 2.29
2194 2416 4.405680 TGGGCATACTCCTATCCGAATATG 59.594 45.833 0.00 0.00 0.00 1.78
2195 2417 4.620723 TGGGCATACTCCTATCCGAATAT 58.379 43.478 0.00 0.00 0.00 1.28
2196 2418 4.055710 TGGGCATACTCCTATCCGAATA 57.944 45.455 0.00 0.00 0.00 1.75
2197 2419 2.902608 TGGGCATACTCCTATCCGAAT 58.097 47.619 0.00 0.00 0.00 3.34
2198 2420 2.391926 TGGGCATACTCCTATCCGAA 57.608 50.000 0.00 0.00 0.00 4.30
2199 2421 2.623418 ATGGGCATACTCCTATCCGA 57.377 50.000 0.00 0.00 0.00 4.55
2200 2422 3.769844 AGTAATGGGCATACTCCTATCCG 59.230 47.826 0.00 0.00 0.00 4.18
2201 2423 5.763876 AAGTAATGGGCATACTCCTATCC 57.236 43.478 0.00 0.00 0.00 2.59
2202 2424 5.940470 CCAAAGTAATGGGCATACTCCTATC 59.060 44.000 0.00 0.00 36.79 2.08
2203 2425 5.749032 GCCAAAGTAATGGGCATACTCCTAT 60.749 44.000 0.00 0.00 46.92 2.57
2204 2426 4.445735 GCCAAAGTAATGGGCATACTCCTA 60.446 45.833 0.00 0.00 46.92 2.94
2205 2427 3.688414 GCCAAAGTAATGGGCATACTCCT 60.688 47.826 0.00 0.00 46.92 3.69
2206 2428 2.623416 GCCAAAGTAATGGGCATACTCC 59.377 50.000 0.00 0.00 46.92 3.85
2207 2429 3.990318 GCCAAAGTAATGGGCATACTC 57.010 47.619 0.00 0.00 46.92 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.