Multiple sequence alignment - TraesCS5B01G486000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G486000 chr5B 100.000 4678 0 0 1 4678 657340718 657336041 0.000000e+00 8639.0
1 TraesCS5B01G486000 chr5B 85.854 205 25 4 1195 1397 657419787 657419585 1.020000e-51 215.0
2 TraesCS5B01G486000 chr5A 89.977 2165 150 36 2426 4570 649629528 649627411 0.000000e+00 2734.0
3 TraesCS5B01G486000 chr5A 87.246 1082 58 32 513 1555 649631433 649630393 0.000000e+00 1160.0
4 TraesCS5B01G486000 chr5A 85.484 434 26 18 1720 2134 649630130 649629715 7.240000e-113 418.0
5 TraesCS5B01G486000 chr5A 84.029 407 37 11 1 403 649632030 649631648 2.660000e-97 366.0
6 TraesCS5B01G486000 chr5A 85.577 208 26 4 1195 1400 649643146 649642941 1.020000e-51 215.0
7 TraesCS5B01G486000 chr5A 88.462 156 10 2 1586 1733 649630323 649630168 1.030000e-41 182.0
8 TraesCS5B01G486000 chr5D 90.734 1403 76 15 2648 4041 521147407 521146050 0.000000e+00 1821.0
9 TraesCS5B01G486000 chr5D 85.956 1125 70 39 521 1569 521149538 521148426 0.000000e+00 1122.0
10 TraesCS5B01G486000 chr5D 85.762 892 63 29 1641 2511 521148260 521147412 0.000000e+00 885.0
11 TraesCS5B01G486000 chr5D 80.925 519 76 13 4053 4552 521145305 521144791 5.680000e-104 388.0
12 TraesCS5B01G486000 chr5D 85.100 349 29 9 1 334 521150081 521149741 7.500000e-88 335.0
13 TraesCS5B01G486000 chr5D 86.829 205 23 4 1195 1397 521261193 521260991 4.710000e-55 226.0
14 TraesCS5B01G486000 chr5D 95.690 116 5 0 4563 4678 490822904 490822789 2.220000e-43 187.0
15 TraesCS5B01G486000 chr5D 97.222 108 3 0 4571 4678 56795291 56795184 2.870000e-42 183.0
16 TraesCS5B01G486000 chr7D 97.297 111 3 0 4568 4678 70963895 70963785 6.180000e-44 189.0
17 TraesCS5B01G486000 chr7D 94.958 119 4 2 4560 4678 218362035 218362151 7.990000e-43 185.0
18 TraesCS5B01G486000 chr7D 96.429 112 3 1 4567 4678 227303788 227303678 2.870000e-42 183.0
19 TraesCS5B01G486000 chr7D 94.915 118 5 1 4561 4678 474557663 474557779 2.870000e-42 183.0
20 TraesCS5B01G486000 chr1D 97.273 110 3 0 4569 4678 422794176 422794067 2.220000e-43 187.0
21 TraesCS5B01G486000 chr3D 93.443 122 6 2 4558 4678 107261652 107261532 3.720000e-41 180.0
22 TraesCS5B01G486000 chr3D 86.517 89 10 2 3552 3639 456102858 456102945 3.850000e-16 97.1
23 TraesCS5B01G486000 chr2D 90.909 132 7 5 4548 4678 641115901 641115774 6.220000e-39 172.0
24 TraesCS5B01G486000 chr3A 86.517 89 10 2 3552 3639 598978360 598978447 3.850000e-16 97.1
25 TraesCS5B01G486000 chr7A 92.982 57 4 0 3583 3639 682205139 682205083 3.000000e-12 84.2
26 TraesCS5B01G486000 chr3B 84.091 88 12 2 3552 3638 602587999 602588085 3.000000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G486000 chr5B 657336041 657340718 4677 True 8639.0 8639 100.0000 1 4678 1 chr5B.!!$R1 4677
1 TraesCS5B01G486000 chr5A 649627411 649632030 4619 True 972.0 2734 87.0396 1 4570 5 chr5A.!!$R2 4569
2 TraesCS5B01G486000 chr5D 521144791 521150081 5290 True 910.2 1821 85.6954 1 4552 5 chr5D.!!$R4 4551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 313 0.038526 TTTCGCGACAGGGAGTTCTC 60.039 55.0 9.15 0.00 40.51 2.87 F
885 1119 0.247736 GTGGTGGCTACTCAGAGTGG 59.752 60.0 13.84 11.64 0.00 4.00 F
2156 2644 0.472734 CAGAGGTAGGGAGGGATGGG 60.473 65.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2269 2760 0.035056 CCACTCGGCATTTCCTTCCT 60.035 55.0 0.00 0.0 0.00 3.36 R
2270 2761 0.322546 ACCACTCGGCATTTCCTTCC 60.323 55.0 0.00 0.0 34.57 3.46 R
3974 4491 0.671472 CAGATGCGCCTCTGAACACA 60.671 55.0 31.55 0.0 44.48 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.244816 ATGATGATTGCCGCCAGATG 58.755 50.000 0.00 0.00 0.00 2.90
64 65 3.034635 AGGTGCACCAGATAGTCCTAAG 58.965 50.000 36.39 0.00 38.89 2.18
84 85 9.877222 TCCTAAGAAATCATACTCCTACATACA 57.123 33.333 0.00 0.00 0.00 2.29
87 88 7.603180 AGAAATCATACTCCTACATACAGCA 57.397 36.000 0.00 0.00 0.00 4.41
88 89 7.665690 AGAAATCATACTCCTACATACAGCAG 58.334 38.462 0.00 0.00 0.00 4.24
89 90 6.985653 AATCATACTCCTACATACAGCAGT 57.014 37.500 0.00 0.00 0.00 4.40
150 155 1.006571 AACCGTGTGCGTGGAGTAG 60.007 57.895 0.00 0.00 36.15 2.57
179 189 5.258051 AGCGAACAAATCCCACCTAAATTA 58.742 37.500 0.00 0.00 0.00 1.40
199 209 8.986477 AAATTAAAATGAGCTTCTTTACGCAT 57.014 26.923 0.00 0.00 0.00 4.73
226 236 4.284378 ACGCTCGTTGTAATAGGAGTAC 57.716 45.455 0.00 0.00 33.65 2.73
262 281 2.249844 TCCTTTCCACCACGAACTTC 57.750 50.000 0.00 0.00 0.00 3.01
263 282 1.202722 TCCTTTCCACCACGAACTTCC 60.203 52.381 0.00 0.00 0.00 3.46
265 284 0.841289 TTTCCACCACGAACTTCCCT 59.159 50.000 0.00 0.00 0.00 4.20
266 285 0.841289 TTCCACCACGAACTTCCCTT 59.159 50.000 0.00 0.00 0.00 3.95
267 286 0.841289 TCCACCACGAACTTCCCTTT 59.159 50.000 0.00 0.00 0.00 3.11
294 313 0.038526 TTTCGCGACAGGGAGTTCTC 60.039 55.000 9.15 0.00 40.51 2.87
298 317 1.816863 GCGACAGGGAGTTCTCACCA 61.817 60.000 0.00 0.00 0.00 4.17
392 416 3.463690 GCGCACGTTCGTTCGCTA 61.464 61.111 27.42 0.00 44.56 4.26
418 550 2.663119 ACGACGCAATTAAGAACGTACC 59.337 45.455 0.00 0.00 39.16 3.34
427 559 6.674066 CAATTAAGAACGTACCCACAACAAT 58.326 36.000 0.00 0.00 0.00 2.71
458 591 3.132160 TCGACGGTAACTGAATTTTGCA 58.868 40.909 0.00 0.00 0.00 4.08
466 637 4.630894 AACTGAATTTTGCACTTCGACA 57.369 36.364 0.00 0.00 0.00 4.35
485 656 3.535561 ACAGAATTCCAACCAGATAGCG 58.464 45.455 0.65 0.00 0.00 4.26
497 677 1.064946 GATAGCGTCAGAGCAGCGT 59.935 57.895 0.00 0.00 40.15 5.07
501 681 4.103103 CGTCAGAGCAGCGTCCGA 62.103 66.667 0.00 0.00 0.00 4.55
503 683 3.749064 TCAGAGCAGCGTCCGACC 61.749 66.667 0.00 0.00 0.00 4.79
504 684 3.753434 CAGAGCAGCGTCCGACCT 61.753 66.667 0.00 0.00 0.00 3.85
505 685 3.753434 AGAGCAGCGTCCGACCTG 61.753 66.667 10.88 10.88 0.00 4.00
506 686 4.057428 GAGCAGCGTCCGACCTGT 62.057 66.667 14.66 5.79 0.00 4.00
507 687 4.363990 AGCAGCGTCCGACCTGTG 62.364 66.667 14.66 3.12 0.00 3.66
508 688 4.357947 GCAGCGTCCGACCTGTGA 62.358 66.667 14.66 0.00 0.00 3.58
509 689 2.126307 CAGCGTCCGACCTGTGAG 60.126 66.667 8.21 0.00 0.00 3.51
510 690 4.057428 AGCGTCCGACCTGTGAGC 62.057 66.667 0.00 0.00 0.00 4.26
512 692 3.733960 CGTCCGACCTGTGAGCGA 61.734 66.667 0.00 0.00 0.00 4.93
513 693 2.126424 GTCCGACCTGTGAGCGAC 60.126 66.667 0.00 0.00 0.00 5.19
514 694 3.371063 TCCGACCTGTGAGCGACC 61.371 66.667 0.00 0.00 0.00 4.79
515 695 4.436998 CCGACCTGTGAGCGACCC 62.437 72.222 0.00 0.00 0.00 4.46
516 696 3.680786 CGACCTGTGAGCGACCCA 61.681 66.667 0.00 0.00 0.00 4.51
517 697 2.048127 GACCTGTGAGCGACCCAC 60.048 66.667 0.00 0.00 35.23 4.61
518 698 3.591254 GACCTGTGAGCGACCCACC 62.591 68.421 0.00 0.00 33.80 4.61
519 699 3.314331 CCTGTGAGCGACCCACCT 61.314 66.667 0.00 0.00 33.80 4.00
520 700 1.982395 CCTGTGAGCGACCCACCTA 60.982 63.158 0.00 0.00 33.80 3.08
521 701 1.215647 CTGTGAGCGACCCACCTAC 59.784 63.158 0.00 0.00 33.80 3.18
522 702 2.227089 CTGTGAGCGACCCACCTACC 62.227 65.000 0.00 0.00 33.80 3.18
523 703 3.066190 TGAGCGACCCACCTACCG 61.066 66.667 0.00 0.00 0.00 4.02
524 704 3.066814 GAGCGACCCACCTACCGT 61.067 66.667 0.00 0.00 0.00 4.83
525 705 3.352338 GAGCGACCCACCTACCGTG 62.352 68.421 0.00 0.00 42.62 4.94
756 973 1.278038 GTCGCGCCTACTACTACCG 59.722 63.158 0.00 0.00 0.00 4.02
885 1119 0.247736 GTGGTGGCTACTCAGAGTGG 59.752 60.000 13.84 11.64 0.00 4.00
914 1154 2.589610 TAGAGCGGCCAGATCCCACT 62.590 60.000 2.24 0.00 35.47 4.00
969 1209 2.597805 AGAGCCGACCGACACACT 60.598 61.111 0.00 0.00 0.00 3.55
972 1212 2.733593 GCCGACCGACACACTCAC 60.734 66.667 0.00 0.00 0.00 3.51
980 1220 0.941463 CGACACACTCACCAGAGCAC 60.941 60.000 0.00 0.00 46.09 4.40
982 1222 1.665916 CACACTCACCAGAGCACCG 60.666 63.158 0.00 0.00 46.09 4.94
983 1223 2.740055 CACTCACCAGAGCACCGC 60.740 66.667 0.00 0.00 46.09 5.68
1002 1249 2.776072 GAACGGACGAACGCCATG 59.224 61.111 0.00 0.00 37.37 3.66
1003 1250 2.736682 GAACGGACGAACGCCATGG 61.737 63.158 7.63 7.63 37.37 3.66
1004 1251 3.524648 AACGGACGAACGCCATGGT 62.525 57.895 14.67 0.00 37.37 3.55
1005 1252 3.487202 CGGACGAACGCCATGGTG 61.487 66.667 23.88 23.88 0.00 4.17
1006 1253 2.047655 GGACGAACGCCATGGTGA 60.048 61.111 31.66 0.00 0.00 4.02
1007 1254 1.669760 GGACGAACGCCATGGTGAA 60.670 57.895 31.66 0.00 0.00 3.18
1111 1362 1.662438 CTGGAGCTCCGGAGAGTGAC 61.662 65.000 34.60 16.65 45.36 3.67
1142 1393 1.226746 GTGGCTAACGTTTGCTGTCT 58.773 50.000 28.73 0.00 0.00 3.41
1146 1397 1.602377 GCTAACGTTTGCTGTCTTGGT 59.398 47.619 24.34 0.00 0.00 3.67
1444 1717 1.306148 TACTATCTCACCGCCACTCG 58.694 55.000 0.00 0.00 38.08 4.18
1498 1775 2.285069 TGGGGTACGGTGGCATCT 60.285 61.111 0.00 0.00 0.00 2.90
1509 1786 1.737793 GGTGGCATCTAAAGTGAACGG 59.262 52.381 0.00 0.00 0.00 4.44
1552 1829 2.329379 CGCATAAAGATACGGAGGAGC 58.671 52.381 0.00 0.00 0.00 4.70
1601 1988 3.914312 ACTTGATATATTGACGCGGGAG 58.086 45.455 12.47 0.00 0.00 4.30
1627 2021 2.753452 TCGACCTAATTTCGTGAGCTCT 59.247 45.455 16.19 0.00 37.73 4.09
1651 2045 5.495640 AGCTCTAGATAAGCCAATAATGCC 58.504 41.667 0.00 0.00 40.75 4.40
1745 2206 2.035449 TCTGTTCTCGTGGTACCAACAG 59.965 50.000 27.28 27.28 43.52 3.16
1758 2219 4.262506 GGTACCAACAGAAGTTACTCAGCT 60.263 45.833 7.15 0.00 35.85 4.24
1772 2241 8.677148 AGTTACTCAGCTGTAGAATTCAAAAA 57.323 30.769 14.67 0.00 0.00 1.94
1789 2258 5.897050 TCAAAAATTCAAAGCCGTTGTAGT 58.103 33.333 0.00 0.00 38.47 2.73
1797 2266 2.907910 AGCCGTTGTAGTACTGTACG 57.092 50.000 11.97 11.77 0.00 3.67
1802 2273 4.641954 CCGTTGTAGTACTGTACGTAGTG 58.358 47.826 18.52 0.00 45.73 2.74
1837 2308 1.089920 GTACTGCTGCTGGGTGATTG 58.910 55.000 11.29 0.00 0.00 2.67
1842 2313 1.639298 GCTGCTGGGTGATTGTCGTC 61.639 60.000 0.00 0.00 0.00 4.20
1846 2317 1.442769 CTGGGTGATTGTCGTCAAGG 58.557 55.000 0.97 0.00 36.97 3.61
1850 2325 2.280628 GGTGATTGTCGTCAAGGGATC 58.719 52.381 0.97 0.00 36.97 3.36
1873 2352 7.724490 TCATGATCCTTGTATCTATAGGTGG 57.276 40.000 0.00 0.00 0.00 4.61
1882 2361 4.577693 TGTATCTATAGGTGGTCACGTGAC 59.422 45.833 35.26 35.26 44.04 3.67
1893 2372 1.801913 CACGTGACGCAGGAGCTAC 60.802 63.158 10.90 0.00 39.10 3.58
1913 2392 0.803768 CACTCCAGATTGTCGGCTCG 60.804 60.000 0.00 0.00 0.00 5.03
1989 2471 2.554370 ATTTGCTGCCAAATTGCTGT 57.446 40.000 0.00 0.00 46.66 4.40
1997 2479 1.275856 GCCAAATTGCTGTGGATTCCA 59.724 47.619 0.00 0.00 37.03 3.53
2009 2491 3.228188 TGGATTCCACACTTTTGCTCT 57.772 42.857 0.00 0.00 0.00 4.09
2010 2492 2.886523 TGGATTCCACACTTTTGCTCTG 59.113 45.455 0.00 0.00 0.00 3.35
2068 2551 1.181098 GGTGGTTGTGCATGGCTTCT 61.181 55.000 0.00 0.00 0.00 2.85
2078 2566 1.407851 GCATGGCTTCTGTCCAGATGA 60.408 52.381 12.80 0.00 37.29 2.92
2105 2593 2.512745 ACGCCGTGCAGACAAACA 60.513 55.556 0.00 0.00 0.00 2.83
2153 2641 1.237458 GGCAGAGGTAGGGAGGGAT 59.763 63.158 0.00 0.00 0.00 3.85
2156 2644 0.472734 CAGAGGTAGGGAGGGATGGG 60.473 65.000 0.00 0.00 0.00 4.00
2182 2670 3.964875 GTGCCGTGCCCACAAGTG 61.965 66.667 0.00 0.00 33.50 3.16
2190 2678 2.195683 CCCACAAGTGCACCACCT 59.804 61.111 14.63 0.00 34.49 4.00
2269 2760 2.030540 GCTCATTGCACAGCTCTTTTGA 60.031 45.455 4.54 0.00 42.31 2.69
2270 2761 3.913711 GCTCATTGCACAGCTCTTTTGAG 60.914 47.826 4.54 0.00 44.53 3.02
2271 2762 2.555325 TCATTGCACAGCTCTTTTGAGG 59.445 45.455 0.00 0.00 46.30 3.86
2272 2763 2.346766 TTGCACAGCTCTTTTGAGGA 57.653 45.000 0.00 0.00 46.30 3.71
2273 2764 2.346766 TGCACAGCTCTTTTGAGGAA 57.653 45.000 0.00 0.00 46.30 3.36
2282 2773 3.367806 GCTCTTTTGAGGAAGGAAATGCC 60.368 47.826 0.00 0.00 46.30 4.40
2343 2834 4.340246 GGTTGGGTGGGACGGGAC 62.340 72.222 0.00 0.00 0.00 4.46
2358 2849 1.387539 GGGACGTAGAGGTCACCTAC 58.612 60.000 0.00 0.00 38.70 3.18
2380 2871 4.466370 ACCTATACTCAGCTGCAGTTGTTA 59.534 41.667 27.01 19.71 0.00 2.41
2387 2878 0.512952 GCTGCAGTTGTTACACTCGG 59.487 55.000 16.64 0.00 0.00 4.63
2390 2881 0.512952 GCAGTTGTTACACTCGGCAG 59.487 55.000 6.88 0.00 0.00 4.85
2393 2884 1.965643 AGTTGTTACACTCGGCAGGTA 59.034 47.619 0.00 0.00 0.00 3.08
2394 2885 2.029290 AGTTGTTACACTCGGCAGGTAG 60.029 50.000 0.00 0.00 0.00 3.18
2444 2936 4.408182 AGGCTACGCTGTCAATCTAATT 57.592 40.909 0.00 0.00 0.00 1.40
2450 2942 7.096147 GGCTACGCTGTCAATCTAATTTAGTAC 60.096 40.741 3.45 0.00 0.00 2.73
2453 2945 7.544622 ACGCTGTCAATCTAATTTAGTACTGA 58.455 34.615 5.39 0.00 0.00 3.41
2454 2946 8.033038 ACGCTGTCAATCTAATTTAGTACTGAA 58.967 33.333 5.39 3.66 0.00 3.02
2455 2947 9.035607 CGCTGTCAATCTAATTTAGTACTGAAT 57.964 33.333 5.39 6.33 0.00 2.57
2488 2983 9.918630 ATTAGACTTTTGAATGGACATTTCTTG 57.081 29.630 0.00 0.00 0.00 3.02
2492 2987 8.237811 ACTTTTGAATGGACATTTCTTGTACT 57.762 30.769 0.00 0.00 40.17 2.73
2542 3037 7.630242 AATATCCACATGAAAATCACTTCGT 57.370 32.000 0.00 0.00 0.00 3.85
2559 3054 5.920840 CACTTCGTGTTAGTTCAGAGATTCA 59.079 40.000 0.00 0.00 0.00 2.57
2564 3059 5.473931 GTGTTAGTTCAGAGATTCAGAGCA 58.526 41.667 0.00 0.00 0.00 4.26
2567 3062 3.936564 AGTTCAGAGATTCAGAGCAACC 58.063 45.455 0.00 0.00 0.00 3.77
2568 3063 2.662006 TCAGAGATTCAGAGCAACCG 57.338 50.000 0.00 0.00 0.00 4.44
2571 3075 1.066573 AGAGATTCAGAGCAACCGTGG 60.067 52.381 0.00 0.00 0.00 4.94
2573 3077 1.072331 AGATTCAGAGCAACCGTGGTT 59.928 47.619 0.00 0.00 39.13 3.67
2585 3089 1.135228 ACCGTGGTTGTTGCTTTGTTC 60.135 47.619 0.00 0.00 0.00 3.18
2586 3090 1.135257 CCGTGGTTGTTGCTTTGTTCA 60.135 47.619 0.00 0.00 0.00 3.18
2590 3094 1.866601 GGTTGTTGCTTTGTTCATGGC 59.133 47.619 0.00 0.00 0.00 4.40
2591 3095 1.866601 GTTGTTGCTTTGTTCATGGCC 59.133 47.619 0.00 0.00 0.00 5.36
2597 3101 1.551883 GCTTTGTTCATGGCCCATCTT 59.448 47.619 0.00 0.00 0.00 2.40
2609 3113 5.645056 TGGCCCATCTTAGTTCATATTCA 57.355 39.130 0.00 0.00 0.00 2.57
2610 3114 5.376625 TGGCCCATCTTAGTTCATATTCAC 58.623 41.667 0.00 0.00 0.00 3.18
2612 3116 6.006449 GGCCCATCTTAGTTCATATTCACAT 58.994 40.000 0.00 0.00 0.00 3.21
2613 3117 6.491403 GGCCCATCTTAGTTCATATTCACATT 59.509 38.462 0.00 0.00 0.00 2.71
2643 3147 6.296026 TCAAGGCAAGAGTAATGTTGTAAGT 58.704 36.000 1.88 0.00 0.00 2.24
2645 3149 7.934665 TCAAGGCAAGAGTAATGTTGTAAGTAA 59.065 33.333 1.88 0.00 0.00 2.24
2646 3150 8.730680 CAAGGCAAGAGTAATGTTGTAAGTAAT 58.269 33.333 1.88 0.00 0.00 1.89
2647 3151 8.863872 AGGCAAGAGTAATGTTGTAAGTAATT 57.136 30.769 1.88 0.00 0.00 1.40
2648 3152 9.953565 AGGCAAGAGTAATGTTGTAAGTAATTA 57.046 29.630 1.88 0.00 0.00 1.40
3063 3568 2.949447 AGCAACCCAACAAACATCTCT 58.051 42.857 0.00 0.00 0.00 3.10
3064 3569 2.887152 AGCAACCCAACAAACATCTCTC 59.113 45.455 0.00 0.00 0.00 3.20
3065 3570 2.887152 GCAACCCAACAAACATCTCTCT 59.113 45.455 0.00 0.00 0.00 3.10
3066 3571 3.057946 GCAACCCAACAAACATCTCTCTC 60.058 47.826 0.00 0.00 0.00 3.20
3067 3572 3.425162 ACCCAACAAACATCTCTCTCC 57.575 47.619 0.00 0.00 0.00 3.71
3068 3573 2.711009 ACCCAACAAACATCTCTCTCCA 59.289 45.455 0.00 0.00 0.00 3.86
3069 3574 3.244700 ACCCAACAAACATCTCTCTCCAG 60.245 47.826 0.00 0.00 0.00 3.86
3071 3576 4.324099 CCCAACAAACATCTCTCTCCAGAT 60.324 45.833 0.00 0.00 33.00 2.90
3072 3577 4.874966 CCAACAAACATCTCTCTCCAGATC 59.125 45.833 0.00 0.00 30.07 2.75
3073 3578 5.485620 CAACAAACATCTCTCTCCAGATCA 58.514 41.667 0.00 0.00 30.07 2.92
3074 3579 5.752036 ACAAACATCTCTCTCCAGATCAA 57.248 39.130 0.00 0.00 30.07 2.57
3075 3580 6.119240 ACAAACATCTCTCTCCAGATCAAA 57.881 37.500 0.00 0.00 30.07 2.69
3076 3581 6.719301 ACAAACATCTCTCTCCAGATCAAAT 58.281 36.000 0.00 0.00 30.07 2.32
3077 3582 7.173722 ACAAACATCTCTCTCCAGATCAAATT 58.826 34.615 0.00 0.00 30.07 1.82
3078 3583 8.324306 ACAAACATCTCTCTCCAGATCAAATTA 58.676 33.333 0.00 0.00 30.07 1.40
3079 3584 9.170734 CAAACATCTCTCTCCAGATCAAATTAA 57.829 33.333 0.00 0.00 30.07 1.40
3082 3587 8.324306 ACATCTCTCTCCAGATCAAATTAACAA 58.676 33.333 0.00 0.00 30.07 2.83
3119 3624 2.001812 TGATCTCAACGAAGCTCTGC 57.998 50.000 0.00 0.00 0.00 4.26
3120 3625 1.547820 TGATCTCAACGAAGCTCTGCT 59.452 47.619 0.00 0.00 42.56 4.24
3121 3626 2.192624 GATCTCAACGAAGCTCTGCTC 58.807 52.381 0.00 0.00 38.25 4.26
3122 3627 1.252175 TCTCAACGAAGCTCTGCTCT 58.748 50.000 0.00 0.00 38.25 4.09
3123 3628 1.067985 TCTCAACGAAGCTCTGCTCTG 60.068 52.381 0.00 0.00 38.25 3.35
3144 3649 4.132336 TGATCTTCTTCTGTATGCATGGC 58.868 43.478 10.16 2.61 0.00 4.40
3146 3651 3.538591 TCTTCTTCTGTATGCATGGCTG 58.461 45.455 10.16 6.55 0.00 4.85
3148 3653 1.561076 TCTTCTGTATGCATGGCTGGT 59.439 47.619 10.16 0.00 0.00 4.00
3149 3654 2.025981 TCTTCTGTATGCATGGCTGGTT 60.026 45.455 10.16 0.00 0.00 3.67
3150 3655 1.753930 TCTGTATGCATGGCTGGTTG 58.246 50.000 10.16 0.00 0.00 3.77
3274 3779 1.966451 GCAACGTGGACCCCAAGAG 60.966 63.158 5.96 0.17 36.54 2.85
3685 4190 4.148825 GGCCCTCTGACGCGTCAT 62.149 66.667 39.09 4.49 39.13 3.06
3686 4191 2.583593 GCCCTCTGACGCGTCATC 60.584 66.667 39.09 22.00 39.13 2.92
3687 4192 2.885113 CCCTCTGACGCGTCATCA 59.115 61.111 39.09 27.24 39.13 3.07
3688 4193 1.439228 CCCTCTGACGCGTCATCAT 59.561 57.895 39.09 2.62 39.13 2.45
3689 4194 0.596083 CCCTCTGACGCGTCATCATC 60.596 60.000 39.09 14.50 39.13 2.92
3690 4195 0.932123 CCTCTGACGCGTCATCATCG 60.932 60.000 39.09 27.26 39.13 3.84
3700 4205 0.247576 GTCATCATCGTCGTCGTCGT 60.248 55.000 11.41 0.00 38.33 4.34
3729 4240 1.602877 CGTCGTACAGTGTCGTTGCC 61.603 60.000 0.00 0.00 0.00 4.52
3768 4279 0.392706 TGTGGACGCCATGGCTATAG 59.607 55.000 33.07 20.33 35.28 1.31
3811 4326 6.570186 GCAATGTGATCAAATGTGTGTTCCTA 60.570 38.462 0.00 0.00 0.00 2.94
3818 4333 5.316167 TCAAATGTGTGTTCCTATGCTCTT 58.684 37.500 0.00 0.00 0.00 2.85
3824 4339 3.834813 TGTGTTCCTATGCTCTTCTCACT 59.165 43.478 0.00 0.00 0.00 3.41
3853 4368 1.819632 CCCTTACACGCTGGATGCC 60.820 63.158 0.00 0.00 38.78 4.40
3859 4374 1.237285 ACACGCTGGATGCCTTTCAC 61.237 55.000 0.00 0.00 38.78 3.18
3910 4425 2.154462 ACGCTGAAATTTGACCTCCAG 58.846 47.619 0.00 0.00 0.00 3.86
3959 4476 4.503741 ACAAATGGACTTCACAAATCCG 57.496 40.909 0.00 0.00 35.06 4.18
3974 4491 5.014202 ACAAATCCGTAAACCTAAATGCCT 58.986 37.500 0.00 0.00 0.00 4.75
3981 4498 4.214545 CGTAAACCTAAATGCCTGTGTTCA 59.785 41.667 0.00 0.00 0.00 3.18
3983 4500 3.788227 ACCTAAATGCCTGTGTTCAGA 57.212 42.857 0.00 0.00 43.76 3.27
3984 4501 3.679389 ACCTAAATGCCTGTGTTCAGAG 58.321 45.455 0.00 0.00 43.76 3.35
3987 4504 0.957395 AATGCCTGTGTTCAGAGGCG 60.957 55.000 27.39 3.45 43.76 5.52
3988 4505 3.426568 GCCTGTGTTCAGAGGCGC 61.427 66.667 21.71 0.00 43.76 6.53
3989 4506 2.031012 CCTGTGTTCAGAGGCGCA 59.969 61.111 10.83 0.00 43.76 6.09
3990 4507 1.376424 CCTGTGTTCAGAGGCGCAT 60.376 57.895 10.83 0.00 43.76 4.73
3991 4508 1.364626 CCTGTGTTCAGAGGCGCATC 61.365 60.000 15.45 15.45 43.76 3.91
3992 4509 0.390866 CTGTGTTCAGAGGCGCATCT 60.391 55.000 20.55 20.55 43.76 2.90
3993 4510 0.671472 TGTGTTCAGAGGCGCATCTG 60.671 55.000 38.67 38.67 46.70 2.90
3994 4511 1.742880 TGTTCAGAGGCGCATCTGC 60.743 57.895 39.28 28.66 45.25 4.26
3999 4517 2.099062 GAGGCGCATCTGCAAACG 59.901 61.111 16.00 0.00 42.21 3.60
4035 4553 0.244721 CATGTCTCCGTGTCTGCAGA 59.755 55.000 13.74 13.74 0.00 4.26
4058 5308 1.231963 CCCCCTTAGGCCCTTACATT 58.768 55.000 0.00 0.00 0.00 2.71
4144 5394 6.016024 ACATTCAGACAACACAAACATAGCAT 60.016 34.615 0.00 0.00 0.00 3.79
4148 5398 5.012239 AGACAACACAAACATAGCATGGAT 58.988 37.500 0.00 0.00 33.60 3.41
4199 5449 1.185315 CCGGCCCAAAAGTTCATCAT 58.815 50.000 0.00 0.00 0.00 2.45
4202 5452 2.752354 CGGCCCAAAAGTTCATCATACA 59.248 45.455 0.00 0.00 0.00 2.29
4241 5508 0.468648 ACATAGCTAAACGGAGGGGC 59.531 55.000 0.00 0.00 0.00 5.80
4242 5509 0.468226 CATAGCTAAACGGAGGGGCA 59.532 55.000 0.00 0.00 0.00 5.36
4243 5510 0.468648 ATAGCTAAACGGAGGGGCAC 59.531 55.000 0.00 0.00 0.00 5.01
4247 5515 2.536997 CTAAACGGAGGGGCACTGGG 62.537 65.000 0.00 0.00 0.00 4.45
4278 5546 4.689549 TCGCCGGTCCCTTCTCCA 62.690 66.667 1.90 0.00 0.00 3.86
4309 5577 4.200874 CGAGAGTGGTGATAGTAGTCCTT 58.799 47.826 0.00 0.00 0.00 3.36
4442 5711 3.642778 GAGCCGAGCCACTTACGCA 62.643 63.158 0.00 0.00 0.00 5.24
4450 5719 1.999051 CCACTTACGCATCGACAGC 59.001 57.895 1.74 1.74 0.00 4.40
4467 5736 3.374402 CCACCCTCTCTGTCGCGT 61.374 66.667 5.77 0.00 0.00 6.01
4469 5738 2.282251 ACCCTCTCTGTCGCGTGA 60.282 61.111 5.77 0.00 0.00 4.35
4558 5827 2.358125 TGTTGTGGACATCGGCGG 60.358 61.111 7.21 0.00 32.00 6.13
4560 5829 2.047655 TTGTGGACATCGGCGGAC 60.048 61.111 7.21 0.00 0.00 4.79
4571 5840 4.101790 GGCGGACGCAACACCATG 62.102 66.667 18.95 0.00 44.11 3.66
4572 5841 3.047280 GCGGACGCAACACCATGA 61.047 61.111 12.31 0.00 41.49 3.07
4573 5842 2.398554 GCGGACGCAACACCATGAT 61.399 57.895 12.31 0.00 41.49 2.45
4574 5843 1.425031 CGGACGCAACACCATGATG 59.575 57.895 0.00 0.00 0.00 3.07
4575 5844 1.298157 CGGACGCAACACCATGATGT 61.298 55.000 0.00 0.00 0.00 3.06
4576 5845 0.447801 GGACGCAACACCATGATGTC 59.552 55.000 0.00 0.00 30.55 3.06
4577 5846 1.442769 GACGCAACACCATGATGTCT 58.557 50.000 0.00 0.00 30.55 3.41
4578 5847 2.616960 GACGCAACACCATGATGTCTA 58.383 47.619 0.00 0.00 30.55 2.59
4579 5848 2.346803 ACGCAACACCATGATGTCTAC 58.653 47.619 0.00 0.00 30.55 2.59
4580 5849 2.028112 ACGCAACACCATGATGTCTACT 60.028 45.455 0.00 0.00 30.55 2.57
4581 5850 2.349580 CGCAACACCATGATGTCTACTG 59.650 50.000 0.00 0.00 30.55 2.74
4582 5851 2.096496 GCAACACCATGATGTCTACTGC 59.904 50.000 0.00 0.00 30.55 4.40
4583 5852 2.299993 ACACCATGATGTCTACTGCG 57.700 50.000 0.00 0.00 0.00 5.18
4584 5853 0.933097 CACCATGATGTCTACTGCGC 59.067 55.000 0.00 0.00 0.00 6.09
4585 5854 0.536724 ACCATGATGTCTACTGCGCA 59.463 50.000 10.98 10.98 0.00 6.09
4586 5855 1.066215 ACCATGATGTCTACTGCGCAA 60.066 47.619 13.05 0.00 0.00 4.85
4587 5856 1.328680 CCATGATGTCTACTGCGCAAC 59.671 52.381 13.05 7.37 0.00 4.17
4588 5857 2.274437 CATGATGTCTACTGCGCAACT 58.726 47.619 13.05 1.28 0.00 3.16
4589 5858 2.455674 TGATGTCTACTGCGCAACTT 57.544 45.000 13.05 4.63 0.00 2.66
4590 5859 2.766313 TGATGTCTACTGCGCAACTTT 58.234 42.857 13.05 0.00 0.00 2.66
4591 5860 3.920446 TGATGTCTACTGCGCAACTTTA 58.080 40.909 13.05 0.00 0.00 1.85
4592 5861 4.503910 TGATGTCTACTGCGCAACTTTAT 58.496 39.130 13.05 1.69 0.00 1.40
4593 5862 4.935205 TGATGTCTACTGCGCAACTTTATT 59.065 37.500 13.05 0.00 0.00 1.40
4594 5863 4.921470 TGTCTACTGCGCAACTTTATTC 57.079 40.909 13.05 0.00 0.00 1.75
4595 5864 4.566004 TGTCTACTGCGCAACTTTATTCT 58.434 39.130 13.05 0.00 0.00 2.40
4596 5865 4.994852 TGTCTACTGCGCAACTTTATTCTT 59.005 37.500 13.05 0.00 0.00 2.52
4597 5866 6.160684 TGTCTACTGCGCAACTTTATTCTTA 58.839 36.000 13.05 0.00 0.00 2.10
4598 5867 6.816640 TGTCTACTGCGCAACTTTATTCTTAT 59.183 34.615 13.05 0.00 0.00 1.73
4599 5868 7.977293 TGTCTACTGCGCAACTTTATTCTTATA 59.023 33.333 13.05 0.00 0.00 0.98
4600 5869 8.480853 GTCTACTGCGCAACTTTATTCTTATAG 58.519 37.037 13.05 0.00 0.00 1.31
4601 5870 8.410912 TCTACTGCGCAACTTTATTCTTATAGA 58.589 33.333 13.05 0.55 0.00 1.98
4602 5871 7.235430 ACTGCGCAACTTTATTCTTATAGAC 57.765 36.000 13.05 0.00 0.00 2.59
4603 5872 7.042335 ACTGCGCAACTTTATTCTTATAGACT 58.958 34.615 13.05 0.00 0.00 3.24
4604 5873 7.222999 ACTGCGCAACTTTATTCTTATAGACTC 59.777 37.037 13.05 0.00 0.00 3.36
4605 5874 6.198403 TGCGCAACTTTATTCTTATAGACTCG 59.802 38.462 8.16 0.00 0.00 4.18
4606 5875 6.198591 GCGCAACTTTATTCTTATAGACTCGT 59.801 38.462 0.30 0.00 0.00 4.18
4607 5876 7.547961 CGCAACTTTATTCTTATAGACTCGTG 58.452 38.462 0.00 0.00 0.00 4.35
4608 5877 7.220300 CGCAACTTTATTCTTATAGACTCGTGT 59.780 37.037 0.00 0.00 0.00 4.49
4609 5878 8.870879 GCAACTTTATTCTTATAGACTCGTGTT 58.129 33.333 0.00 0.00 0.00 3.32
4611 5880 8.928270 ACTTTATTCTTATAGACTCGTGTTGG 57.072 34.615 0.00 0.00 0.00 3.77
4612 5881 7.980099 ACTTTATTCTTATAGACTCGTGTTGGG 59.020 37.037 0.00 0.00 0.00 4.12
4613 5882 3.795623 TCTTATAGACTCGTGTTGGGC 57.204 47.619 0.00 0.00 0.00 5.36
4614 5883 2.429610 TCTTATAGACTCGTGTTGGGCC 59.570 50.000 0.00 0.00 0.00 5.80
4615 5884 2.154567 TATAGACTCGTGTTGGGCCT 57.845 50.000 4.53 0.00 0.00 5.19
4616 5885 0.824759 ATAGACTCGTGTTGGGCCTC 59.175 55.000 4.53 0.00 0.00 4.70
4617 5886 1.255667 TAGACTCGTGTTGGGCCTCC 61.256 60.000 4.53 0.00 0.00 4.30
4618 5887 2.847234 ACTCGTGTTGGGCCTCCA 60.847 61.111 4.53 0.00 42.25 3.86
4628 5897 4.400961 GGCCTCCAAGCGCAGAGT 62.401 66.667 11.47 0.00 0.00 3.24
4629 5898 2.359230 GCCTCCAAGCGCAGAGTT 60.359 61.111 11.47 0.00 0.00 3.01
4630 5899 1.968540 GCCTCCAAGCGCAGAGTTT 60.969 57.895 11.47 0.00 0.00 2.66
4631 5900 1.518903 GCCTCCAAGCGCAGAGTTTT 61.519 55.000 11.47 0.00 0.00 2.43
4632 5901 0.239347 CCTCCAAGCGCAGAGTTTTG 59.761 55.000 11.47 3.68 0.00 2.44
4633 5902 0.947244 CTCCAAGCGCAGAGTTTTGT 59.053 50.000 11.47 0.00 0.00 2.83
4634 5903 2.143122 CTCCAAGCGCAGAGTTTTGTA 58.857 47.619 11.47 0.00 0.00 2.41
4635 5904 2.143122 TCCAAGCGCAGAGTTTTGTAG 58.857 47.619 11.47 0.00 0.00 2.74
4636 5905 1.197721 CCAAGCGCAGAGTTTTGTAGG 59.802 52.381 11.47 0.00 0.00 3.18
4637 5906 2.143122 CAAGCGCAGAGTTTTGTAGGA 58.857 47.619 11.47 0.00 0.00 2.94
4638 5907 1.797025 AGCGCAGAGTTTTGTAGGAC 58.203 50.000 11.47 0.00 0.00 3.85
4639 5908 1.070134 AGCGCAGAGTTTTGTAGGACA 59.930 47.619 11.47 0.00 0.00 4.02
4640 5909 1.461127 GCGCAGAGTTTTGTAGGACAG 59.539 52.381 0.30 0.00 0.00 3.51
4641 5910 2.755650 CGCAGAGTTTTGTAGGACAGT 58.244 47.619 0.00 0.00 0.00 3.55
4642 5911 3.859627 GCGCAGAGTTTTGTAGGACAGTA 60.860 47.826 0.30 0.00 0.00 2.74
4643 5912 3.921021 CGCAGAGTTTTGTAGGACAGTAG 59.079 47.826 0.00 0.00 0.00 2.57
4644 5913 3.680458 GCAGAGTTTTGTAGGACAGTAGC 59.320 47.826 0.00 0.00 0.00 3.58
4645 5914 4.799586 GCAGAGTTTTGTAGGACAGTAGCA 60.800 45.833 0.00 0.00 0.00 3.49
4646 5915 5.297547 CAGAGTTTTGTAGGACAGTAGCAA 58.702 41.667 0.00 0.00 0.00 3.91
4647 5916 5.934625 CAGAGTTTTGTAGGACAGTAGCAAT 59.065 40.000 0.00 0.00 0.00 3.56
4648 5917 6.428159 CAGAGTTTTGTAGGACAGTAGCAATT 59.572 38.462 0.00 0.00 0.00 2.32
4649 5918 6.998673 AGAGTTTTGTAGGACAGTAGCAATTT 59.001 34.615 0.00 0.00 0.00 1.82
4650 5919 7.502561 AGAGTTTTGTAGGACAGTAGCAATTTT 59.497 33.333 0.00 0.00 0.00 1.82
4651 5920 8.007405 AGTTTTGTAGGACAGTAGCAATTTTT 57.993 30.769 0.00 0.00 0.00 1.94
4652 5921 8.135529 AGTTTTGTAGGACAGTAGCAATTTTTC 58.864 33.333 0.00 0.00 0.00 2.29
4653 5922 6.569179 TTGTAGGACAGTAGCAATTTTTCC 57.431 37.500 0.00 0.00 0.00 3.13
4654 5923 5.876357 TGTAGGACAGTAGCAATTTTTCCT 58.124 37.500 0.00 0.00 36.05 3.36
4655 5924 5.938125 TGTAGGACAGTAGCAATTTTTCCTC 59.062 40.000 0.00 0.00 33.91 3.71
4656 5925 4.985538 AGGACAGTAGCAATTTTTCCTCA 58.014 39.130 0.00 0.00 0.00 3.86
4657 5926 5.385198 AGGACAGTAGCAATTTTTCCTCAA 58.615 37.500 0.00 0.00 0.00 3.02
4658 5927 5.474876 AGGACAGTAGCAATTTTTCCTCAAG 59.525 40.000 0.00 0.00 0.00 3.02
4659 5928 5.241728 GGACAGTAGCAATTTTTCCTCAAGT 59.758 40.000 0.00 0.00 0.00 3.16
4660 5929 6.076981 ACAGTAGCAATTTTTCCTCAAGTG 57.923 37.500 0.00 0.00 0.00 3.16
4661 5930 5.010012 ACAGTAGCAATTTTTCCTCAAGTGG 59.990 40.000 0.00 0.00 0.00 4.00
4662 5931 5.241506 CAGTAGCAATTTTTCCTCAAGTGGA 59.758 40.000 0.00 0.00 0.00 4.02
4663 5932 6.012745 AGTAGCAATTTTTCCTCAAGTGGAT 58.987 36.000 0.00 0.00 35.83 3.41
4664 5933 7.121168 CAGTAGCAATTTTTCCTCAAGTGGATA 59.879 37.037 0.00 0.00 35.83 2.59
4665 5934 6.916360 AGCAATTTTTCCTCAAGTGGATAA 57.084 33.333 0.00 0.00 35.83 1.75
4666 5935 6.691508 AGCAATTTTTCCTCAAGTGGATAAC 58.308 36.000 0.00 0.00 35.83 1.89
4667 5936 5.869344 GCAATTTTTCCTCAAGTGGATAACC 59.131 40.000 0.00 0.00 35.83 2.85
4668 5937 6.295292 GCAATTTTTCCTCAAGTGGATAACCT 60.295 38.462 0.00 0.00 35.83 3.50
4669 5938 7.093945 GCAATTTTTCCTCAAGTGGATAACCTA 60.094 37.037 0.00 0.00 35.83 3.08
4670 5939 8.802267 CAATTTTTCCTCAAGTGGATAACCTAA 58.198 33.333 0.00 0.00 35.83 2.69
4671 5940 7.996098 TTTTTCCTCAAGTGGATAACCTAAG 57.004 36.000 0.00 0.00 35.83 2.18
4672 5941 5.693769 TTCCTCAAGTGGATAACCTAAGG 57.306 43.478 0.00 0.00 35.83 2.69
4673 5942 4.695606 TCCTCAAGTGGATAACCTAAGGT 58.304 43.478 0.00 0.00 37.65 3.50
4675 5944 5.550403 TCCTCAAGTGGATAACCTAAGGTTT 59.450 40.000 0.00 0.00 44.33 3.27
4676 5945 6.731919 TCCTCAAGTGGATAACCTAAGGTTTA 59.268 38.462 0.00 0.00 44.33 2.01
4677 5946 7.404980 TCCTCAAGTGGATAACCTAAGGTTTAT 59.595 37.037 0.00 0.00 44.33 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.749621 CTGGTGCACCTAACTGAATTCC 59.250 50.000 34.75 5.79 36.82 3.01
64 65 7.437748 ACTGCTGTATGTAGGAGTATGATTTC 58.562 38.462 3.88 0.00 45.85 2.17
84 85 1.225704 GAGGCCCATGCTAACTGCT 59.774 57.895 0.00 0.00 43.37 4.24
85 86 0.394899 AAGAGGCCCATGCTAACTGC 60.395 55.000 0.00 0.00 43.25 4.40
87 88 2.907458 AAAAGAGGCCCATGCTAACT 57.093 45.000 0.00 0.00 37.74 2.24
150 155 1.533731 TGGGATTTGTTCGCTCGTTTC 59.466 47.619 0.00 0.00 38.11 2.78
179 189 6.030228 GCTTATGCGTAAAGAAGCTCATTTT 58.970 36.000 9.76 0.00 40.89 1.82
226 236 3.533606 AGGATTGACACGATTGAGGAG 57.466 47.619 0.00 0.00 0.00 3.69
234 244 1.418264 TGGTGGAAAGGATTGACACGA 59.582 47.619 0.00 0.00 36.68 4.35
281 300 1.343069 ACTGGTGAGAACTCCCTGTC 58.657 55.000 12.28 0.00 31.64 3.51
334 354 3.231298 GGTCCTCCGCCTTATGCT 58.769 61.111 0.00 0.00 38.05 3.79
344 364 4.253257 CTAGCGCGACGGTCCTCC 62.253 72.222 12.10 0.00 38.83 4.30
345 365 4.908877 GCTAGCGCGACGGTCCTC 62.909 72.222 12.10 0.00 38.83 3.71
371 391 2.061495 CGAACGAACGTGCGCTTTG 61.061 57.895 17.82 9.74 40.52 2.77
392 416 0.668096 TCTTAATTGCGTCGTGCCGT 60.668 50.000 0.00 0.00 45.60 5.68
403 427 5.676532 TGTTGTGGGTACGTTCTTAATTG 57.323 39.130 0.00 0.00 0.00 2.32
418 550 5.569413 GTCGAGCCTTTATTATTGTTGTGG 58.431 41.667 0.00 0.00 0.00 4.17
427 559 4.398988 TCAGTTACCGTCGAGCCTTTATTA 59.601 41.667 0.00 0.00 0.00 0.98
458 591 3.071023 TCTGGTTGGAATTCTGTCGAAGT 59.929 43.478 5.23 0.00 31.60 3.01
466 637 3.197766 TGACGCTATCTGGTTGGAATTCT 59.802 43.478 5.23 0.00 0.00 2.40
485 656 2.505118 GTCGGACGCTGCTCTGAC 60.505 66.667 18.49 18.49 38.96 3.51
497 677 3.371063 GGTCGCTCACAGGTCGGA 61.371 66.667 0.00 0.00 0.00 4.55
501 681 2.725127 TAGGTGGGTCGCTCACAGGT 62.725 60.000 11.15 0.00 36.90 4.00
503 683 1.215647 GTAGGTGGGTCGCTCACAG 59.784 63.158 11.15 0.00 36.90 3.66
504 684 2.280552 GGTAGGTGGGTCGCTCACA 61.281 63.158 11.15 0.00 36.90 3.58
505 685 2.577593 GGTAGGTGGGTCGCTCAC 59.422 66.667 1.74 1.74 34.61 3.51
506 686 3.066190 CGGTAGGTGGGTCGCTCA 61.066 66.667 0.00 0.00 0.00 4.26
507 687 3.066814 ACGGTAGGTGGGTCGCTC 61.067 66.667 0.00 0.00 0.00 5.03
508 688 3.379445 CACGGTAGGTGGGTCGCT 61.379 66.667 0.00 0.00 43.16 4.93
515 695 1.079819 CAGACTGCCACGGTAGGTG 60.080 63.158 6.13 0.00 46.57 4.00
516 696 2.283529 CCAGACTGCCACGGTAGGT 61.284 63.158 6.13 0.00 32.04 3.08
517 697 2.579201 CCAGACTGCCACGGTAGG 59.421 66.667 6.13 0.00 32.04 3.18
518 698 2.579201 CCCAGACTGCCACGGTAG 59.421 66.667 0.00 0.00 0.00 3.18
519 699 3.702048 GCCCAGACTGCCACGGTA 61.702 66.667 0.00 0.00 0.00 4.02
521 701 4.641645 TTGCCCAGACTGCCACGG 62.642 66.667 0.00 0.00 0.00 4.94
522 702 3.052082 CTTGCCCAGACTGCCACG 61.052 66.667 0.00 0.00 0.00 4.94
523 703 1.968540 GACTTGCCCAGACTGCCAC 60.969 63.158 0.00 0.00 0.00 5.01
524 704 2.431683 GACTTGCCCAGACTGCCA 59.568 61.111 0.00 0.00 0.00 4.92
525 705 2.743928 CGACTTGCCCAGACTGCC 60.744 66.667 0.00 0.00 0.00 4.85
612 792 0.249447 TCCGATCGGCATTGCTGTAG 60.249 55.000 29.62 9.36 36.18 2.74
613 793 0.249447 CTCCGATCGGCATTGCTGTA 60.249 55.000 29.62 7.77 36.18 2.74
618 798 2.586079 ACGCTCCGATCGGCATTG 60.586 61.111 29.62 19.49 34.68 2.82
657 837 2.183679 AGCGAGATCTCACTCCCTTTT 58.816 47.619 22.31 0.00 33.83 2.27
885 1119 2.107953 CCGCTCTAGCTTGGCTCC 59.892 66.667 0.00 0.00 40.44 4.70
1002 1249 1.448717 GAGGAGCTTCGCCTTCACC 60.449 63.158 0.00 0.00 32.83 4.02
1003 1250 1.807573 CGAGGAGCTTCGCCTTCAC 60.808 63.158 0.00 0.00 32.83 3.18
1004 1251 2.573869 CGAGGAGCTTCGCCTTCA 59.426 61.111 0.00 0.00 32.83 3.02
1090 1338 2.043450 CTCTCCGGAGCTCCAGGT 60.043 66.667 31.67 0.00 35.14 4.00
1123 1374 1.226746 AGACAGCAAACGTTAGCCAC 58.773 50.000 0.00 0.00 0.00 5.01
1131 1382 3.896648 ACATTACCAAGACAGCAAACG 57.103 42.857 0.00 0.00 0.00 3.60
1142 1393 4.385199 CCTCCTCCTGCATTACATTACCAA 60.385 45.833 0.00 0.00 0.00 3.67
1146 1397 3.136443 CACCCTCCTCCTGCATTACATTA 59.864 47.826 0.00 0.00 0.00 1.90
1284 1538 4.392166 TAGGGGCACGCCTCCTCA 62.392 66.667 18.03 6.19 44.92 3.86
1494 1771 1.659098 GACGGCCGTTCACTTTAGATG 59.341 52.381 34.65 0.00 0.00 2.90
1498 1775 0.940519 CGTGACGGCCGTTCACTTTA 60.941 55.000 35.66 18.09 32.68 1.85
1527 1804 1.202440 TCCGTATCTTTATGCGCGGTT 60.202 47.619 8.83 0.00 39.56 4.44
1588 1975 2.202878 GCTGCTCCCGCGTCAATA 60.203 61.111 4.92 0.00 39.65 1.90
1601 1988 1.324736 CACGAAATTAGGTCGAGCTGC 59.675 52.381 26.70 9.72 41.02 5.25
1627 2021 6.628175 CGGCATTATTGGCTTATCTAGAGCTA 60.628 42.308 9.20 0.00 45.85 3.32
1636 2030 2.162681 GCCTCGGCATTATTGGCTTAT 58.837 47.619 2.41 0.00 45.85 1.73
1720 2129 2.224695 TGGTACCACGAGAACAGAGAGA 60.225 50.000 11.60 0.00 0.00 3.10
1745 2206 7.891183 TTGAATTCTACAGCTGAGTAACTTC 57.109 36.000 23.35 15.01 0.00 3.01
1758 2219 7.206687 ACGGCTTTGAATTTTTGAATTCTACA 58.793 30.769 7.05 0.00 39.33 2.74
1772 2241 4.638304 ACAGTACTACAACGGCTTTGAAT 58.362 39.130 10.99 0.00 38.73 2.57
1789 2258 3.181507 GCCGTTCATCACTACGTACAGTA 60.182 47.826 0.00 0.00 36.09 2.74
1797 2266 0.454600 TCCTCGCCGTTCATCACTAC 59.545 55.000 0.00 0.00 0.00 2.73
1802 2273 0.248949 GTACCTCCTCGCCGTTCATC 60.249 60.000 0.00 0.00 0.00 2.92
1850 2325 7.179160 TGACCACCTATAGATACAAGGATCATG 59.821 40.741 0.00 0.00 34.34 3.07
1862 2337 2.617308 CGTCACGTGACCACCTATAGAT 59.383 50.000 36.01 0.00 41.86 1.98
1873 2352 2.196382 TAGCTCCTGCGTCACGTGAC 62.196 60.000 33.76 33.76 45.42 3.67
1893 2372 0.460987 GAGCCGACAATCTGGAGTGG 60.461 60.000 3.21 0.00 0.00 4.00
1989 2471 2.886523 CAGAGCAAAAGTGTGGAATCCA 59.113 45.455 0.00 0.00 0.00 3.41
1997 2479 2.551071 GGTAGAGCCAGAGCAAAAGTGT 60.551 50.000 0.00 0.00 43.56 3.55
2005 2487 0.328258 TTTTGGGGTAGAGCCAGAGC 59.672 55.000 0.00 0.00 39.65 4.09
2006 2488 1.630878 AGTTTTGGGGTAGAGCCAGAG 59.369 52.381 0.00 0.00 39.65 3.35
2007 2489 1.351017 CAGTTTTGGGGTAGAGCCAGA 59.649 52.381 0.00 0.00 39.65 3.86
2008 2490 1.073923 ACAGTTTTGGGGTAGAGCCAG 59.926 52.381 0.00 0.00 39.65 4.85
2009 2491 1.145571 ACAGTTTTGGGGTAGAGCCA 58.854 50.000 0.00 0.00 39.65 4.75
2010 2492 1.534729 CACAGTTTTGGGGTAGAGCC 58.465 55.000 0.00 0.00 0.00 4.70
2078 2566 2.331098 CACGGCGTGCATGTTTGT 59.669 55.556 28.30 0.94 0.00 2.83
2105 2593 2.249844 ACGTTGATGGACCTCGTTTT 57.750 45.000 0.00 0.00 0.00 2.43
2182 2670 0.719465 CACGACGAAATAGGTGGTGC 59.281 55.000 0.00 0.00 37.32 5.01
2190 2678 5.902681 AGATTTCTGGATCACGACGAAATA 58.097 37.500 0.00 0.00 35.23 1.40
2269 2760 0.035056 CCACTCGGCATTTCCTTCCT 60.035 55.000 0.00 0.00 0.00 3.36
2270 2761 0.322546 ACCACTCGGCATTTCCTTCC 60.323 55.000 0.00 0.00 34.57 3.46
2271 2762 0.804989 CACCACTCGGCATTTCCTTC 59.195 55.000 0.00 0.00 34.57 3.46
2272 2763 0.400213 TCACCACTCGGCATTTCCTT 59.600 50.000 0.00 0.00 34.57 3.36
2273 2764 0.620556 ATCACCACTCGGCATTTCCT 59.379 50.000 0.00 0.00 34.57 3.36
2282 2773 1.078759 GGACAGCGAATCACCACTCG 61.079 60.000 0.00 0.00 38.11 4.18
2354 2845 3.226777 ACTGCAGCTGAGTATAGGTAGG 58.773 50.000 20.43 0.00 0.00 3.18
2358 2849 3.533606 ACAACTGCAGCTGAGTATAGG 57.466 47.619 23.44 10.61 0.00 2.57
2380 2871 1.219124 CATGCTACCTGCCGAGTGT 59.781 57.895 0.00 0.00 42.00 3.55
2387 2878 2.005451 CTGTTCTCACATGCTACCTGC 58.995 52.381 0.00 0.00 43.25 4.85
2390 2881 2.275318 GCTCTGTTCTCACATGCTACC 58.725 52.381 0.00 0.00 32.55 3.18
2393 2884 1.347050 AGTGCTCTGTTCTCACATGCT 59.653 47.619 0.00 0.00 34.89 3.79
2394 2885 1.463831 CAGTGCTCTGTTCTCACATGC 59.536 52.381 7.63 0.00 36.97 4.06
2460 2952 9.918630 AGAAATGTCCATTCAAAAGTCTAATTG 57.081 29.630 0.00 0.00 0.00 2.32
2502 2997 9.936759 ATGTGGATATTTTACGGAAAATGTTTT 57.063 25.926 25.42 9.69 43.58 2.43
2511 3006 8.402472 GTGATTTTCATGTGGATATTTTACGGA 58.598 33.333 0.00 0.00 0.00 4.69
2540 3035 4.560819 GCTCTGAATCTCTGAACTAACACG 59.439 45.833 0.00 0.00 0.00 4.49
2542 3037 5.728637 TGCTCTGAATCTCTGAACTAACA 57.271 39.130 0.00 0.00 0.00 2.41
2546 3041 3.616076 CGGTTGCTCTGAATCTCTGAACT 60.616 47.826 0.00 0.00 0.00 3.01
2564 3059 0.892063 ACAAAGCAACAACCACGGTT 59.108 45.000 0.00 0.00 39.13 4.44
2567 3062 2.270275 TGAACAAAGCAACAACCACG 57.730 45.000 0.00 0.00 0.00 4.94
2568 3063 2.865551 CCATGAACAAAGCAACAACCAC 59.134 45.455 0.00 0.00 0.00 4.16
2571 3075 1.866601 GGCCATGAACAAAGCAACAAC 59.133 47.619 0.00 0.00 0.00 3.32
2573 3077 0.392336 GGGCCATGAACAAAGCAACA 59.608 50.000 4.39 0.00 0.00 3.33
2578 3082 4.019174 ACTAAGATGGGCCATGAACAAAG 58.981 43.478 26.77 14.00 0.00 2.77
2585 3089 6.005823 TGAATATGAACTAAGATGGGCCATG 58.994 40.000 26.77 12.18 0.00 3.66
2586 3090 6.006449 GTGAATATGAACTAAGATGGGCCAT 58.994 40.000 21.39 21.39 0.00 4.40
2618 3122 6.770785 ACTTACAACATTACTCTTGCCTTGAA 59.229 34.615 0.00 0.00 0.00 2.69
2643 3147 7.603404 AGCTGCAGCATTCAACAATTTTAATTA 59.397 29.630 38.24 0.00 45.16 1.40
2645 3149 5.935789 AGCTGCAGCATTCAACAATTTTAAT 59.064 32.000 38.24 10.39 45.16 1.40
2646 3150 5.299148 AGCTGCAGCATTCAACAATTTTAA 58.701 33.333 38.24 0.00 45.16 1.52
2647 3151 4.885413 AGCTGCAGCATTCAACAATTTTA 58.115 34.783 38.24 0.00 45.16 1.52
2648 3152 3.735591 AGCTGCAGCATTCAACAATTTT 58.264 36.364 38.24 11.97 45.16 1.82
2652 3156 1.682323 TGAAGCTGCAGCATTCAACAA 59.318 42.857 38.24 19.05 45.16 2.83
2654 3158 2.427232 TTGAAGCTGCAGCATTCAAC 57.573 45.000 36.02 24.25 45.16 3.18
2657 3161 1.069378 GCGTTGAAGCTGCAGCATTC 61.069 55.000 38.24 32.61 45.16 2.67
2658 3162 1.080974 GCGTTGAAGCTGCAGCATT 60.081 52.632 38.24 27.82 45.16 3.56
2659 3163 2.564975 GCGTTGAAGCTGCAGCAT 59.435 55.556 38.24 29.24 45.16 3.79
2796 3301 2.792599 CGACGGTCTCGAAGGAGG 59.207 66.667 6.57 0.00 46.14 4.30
2818 3323 1.823041 GGCCCTGAAGATGCTGAGC 60.823 63.158 0.00 0.00 0.00 4.26
2962 3467 1.524849 GGCGCCCTTCCAGAATCTC 60.525 63.158 18.11 0.00 0.00 2.75
2963 3468 2.592308 GGCGCCCTTCCAGAATCT 59.408 61.111 18.11 0.00 0.00 2.40
2965 3470 3.399181 TCGGCGCCCTTCCAGAAT 61.399 61.111 23.46 0.00 0.00 2.40
3063 3568 7.632861 TGGATCTTGTTAATTTGATCTGGAGA 58.367 34.615 11.55 0.00 36.51 3.71
3064 3569 7.772292 TCTGGATCTTGTTAATTTGATCTGGAG 59.228 37.037 11.55 7.65 36.51 3.86
3065 3570 7.632861 TCTGGATCTTGTTAATTTGATCTGGA 58.367 34.615 11.55 8.64 36.51 3.86
3066 3571 7.870509 TCTGGATCTTGTTAATTTGATCTGG 57.129 36.000 11.55 7.25 36.51 3.86
3067 3572 9.117183 TGATCTGGATCTTGTTAATTTGATCTG 57.883 33.333 11.23 7.48 38.60 2.90
3068 3573 9.118300 GTGATCTGGATCTTGTTAATTTGATCT 57.882 33.333 11.23 0.00 38.60 2.75
3069 3574 9.118300 AGTGATCTGGATCTTGTTAATTTGATC 57.882 33.333 11.23 0.00 38.60 2.92
3071 3576 8.868522 AAGTGATCTGGATCTTGTTAATTTGA 57.131 30.769 11.23 0.00 38.60 2.69
3072 3577 9.350357 CAAAGTGATCTGGATCTTGTTAATTTG 57.650 33.333 11.23 8.49 38.60 2.32
3073 3578 9.300681 TCAAAGTGATCTGGATCTTGTTAATTT 57.699 29.630 11.23 1.30 38.60 1.82
3074 3579 8.868522 TCAAAGTGATCTGGATCTTGTTAATT 57.131 30.769 11.23 0.00 38.60 1.40
3075 3580 8.900781 CATCAAAGTGATCTGGATCTTGTTAAT 58.099 33.333 11.23 0.00 34.28 1.40
3076 3581 8.102676 TCATCAAAGTGATCTGGATCTTGTTAA 58.897 33.333 11.23 0.00 34.28 2.01
3077 3582 7.623630 TCATCAAAGTGATCTGGATCTTGTTA 58.376 34.615 11.23 0.00 34.28 2.41
3078 3583 6.479006 TCATCAAAGTGATCTGGATCTTGTT 58.521 36.000 11.23 2.04 34.28 2.83
3079 3584 6.058553 TCATCAAAGTGATCTGGATCTTGT 57.941 37.500 11.23 0.00 34.28 3.16
3106 3611 1.925847 GATCAGAGCAGAGCTTCGTTG 59.074 52.381 0.00 0.00 39.88 4.10
3119 3624 5.697178 CCATGCATACAGAAGAAGATCAGAG 59.303 44.000 0.00 0.00 0.00 3.35
3120 3625 5.608449 CCATGCATACAGAAGAAGATCAGA 58.392 41.667 0.00 0.00 0.00 3.27
3121 3626 4.213694 GCCATGCATACAGAAGAAGATCAG 59.786 45.833 0.00 0.00 0.00 2.90
3122 3627 4.132336 GCCATGCATACAGAAGAAGATCA 58.868 43.478 0.00 0.00 0.00 2.92
3123 3628 4.213694 CAGCCATGCATACAGAAGAAGATC 59.786 45.833 0.00 0.00 0.00 2.75
3144 3649 1.604593 CCCTCCTGCAACCAACCAG 60.605 63.158 0.00 0.00 0.00 4.00
3146 3651 2.283173 CCCCTCCTGCAACCAACC 60.283 66.667 0.00 0.00 0.00 3.77
3148 3653 4.659172 CGCCCCTCCTGCAACCAA 62.659 66.667 0.00 0.00 0.00 3.67
3203 3708 3.905678 CTGTAGGCCTCCTCCGCG 61.906 72.222 9.68 0.00 34.61 6.46
3274 3779 2.223200 GACGAAGAAGACCCGGGACC 62.223 65.000 32.02 18.76 0.00 4.46
3473 3978 1.282248 CGGACATCTGCGTGACGTTT 61.282 55.000 6.91 0.00 0.00 3.60
3671 4176 0.932123 CGATGATGACGCGTCAGAGG 60.932 60.000 40.50 25.37 43.61 3.69
3684 4189 0.725686 AGAACGACGACGACGATGAT 59.274 50.000 25.15 8.87 42.66 2.45
3685 4190 1.349234 TAGAACGACGACGACGATGA 58.651 50.000 25.15 5.64 42.66 2.92
3686 4191 1.830633 GTTAGAACGACGACGACGATG 59.169 52.381 25.15 8.06 42.66 3.84
3687 4192 1.460743 TGTTAGAACGACGACGACGAT 59.539 47.619 25.15 14.38 42.66 3.73
3688 4193 0.858583 TGTTAGAACGACGACGACGA 59.141 50.000 25.15 0.64 42.66 4.20
3689 4194 1.571840 CATGTTAGAACGACGACGACG 59.428 52.381 17.60 17.60 42.66 5.12
3690 4195 1.316735 GCATGTTAGAACGACGACGAC 59.683 52.381 15.32 7.63 42.66 4.34
3700 4205 3.239254 CACTGTACGACGCATGTTAGAA 58.761 45.455 0.00 0.00 0.00 2.10
3729 4240 4.289379 CGATGCAGCACGCCGATG 62.289 66.667 1.53 0.00 41.33 3.84
3743 4254 1.741401 CATGGCGTCCACACACGAT 60.741 57.895 0.50 0.00 42.69 3.73
3746 4257 3.737172 GCCATGGCGTCCACACAC 61.737 66.667 23.48 0.00 35.80 3.82
3784 4296 3.321396 ACACACATTTGATCACATTGCCA 59.679 39.130 0.00 0.00 0.00 4.92
3786 4298 4.386652 GGAACACACATTTGATCACATTGC 59.613 41.667 0.00 0.00 0.00 3.56
3787 4299 5.775686 AGGAACACACATTTGATCACATTG 58.224 37.500 0.00 0.00 0.00 2.82
3811 4326 3.518705 ACAAGATCCAGTGAGAAGAGCAT 59.481 43.478 0.00 0.00 0.00 3.79
3886 4401 3.253432 GGAGGTCAAATTTCAGCGTTTCT 59.747 43.478 0.00 0.00 0.00 2.52
3900 4415 1.344065 TTTCTACCGCTGGAGGTCAA 58.656 50.000 0.00 0.00 44.68 3.18
3904 4419 4.451900 ACAATATTTTCTACCGCTGGAGG 58.548 43.478 1.50 0.00 37.30 4.30
3910 4425 7.311364 TGTCCTTAACAATATTTTCTACCGC 57.689 36.000 0.00 0.00 34.03 5.68
3959 4476 5.472137 TCTGAACACAGGCATTTAGGTTTAC 59.528 40.000 0.00 0.00 33.04 2.01
3974 4491 0.671472 CAGATGCGCCTCTGAACACA 60.671 55.000 31.55 0.00 44.48 3.72
3981 4498 2.393768 CGTTTGCAGATGCGCCTCT 61.394 57.895 9.61 9.61 45.83 3.69
3983 4500 3.434319 CCGTTTGCAGATGCGCCT 61.434 61.111 4.18 0.00 45.83 5.52
3984 4501 3.737172 ACCGTTTGCAGATGCGCC 61.737 61.111 4.18 0.00 45.83 6.53
3987 4504 1.210155 GGTCACCGTTTGCAGATGC 59.790 57.895 0.00 0.00 42.50 3.91
3988 4505 1.497278 CGGTCACCGTTTGCAGATG 59.503 57.895 8.54 0.00 42.73 2.90
3989 4506 1.671054 CCGGTCACCGTTTGCAGAT 60.671 57.895 16.87 0.00 46.80 2.90
3990 4507 2.280524 CCGGTCACCGTTTGCAGA 60.281 61.111 16.87 0.00 46.80 4.26
3991 4508 2.590575 ACCGGTCACCGTTTGCAG 60.591 61.111 16.87 0.15 46.80 4.41
3992 4509 2.589442 GACCGGTCACCGTTTGCA 60.589 61.111 29.75 0.00 46.80 4.08
3993 4510 2.589442 TGACCGGTCACCGTTTGC 60.589 61.111 33.23 5.07 46.80 3.68
4058 5308 1.014804 AGTATGGATTTGGGGGCCAA 58.985 50.000 4.39 0.00 42.29 4.52
4144 5394 6.014584 ACTGTATGCCGAATAAGTATGATCCA 60.015 38.462 0.00 0.00 0.00 3.41
4148 5398 7.551262 ACAAAACTGTATGCCGAATAAGTATGA 59.449 33.333 0.00 0.00 0.00 2.15
4241 5508 1.586154 GGAAACGGTGATGCCCAGTG 61.586 60.000 0.00 0.00 0.00 3.66
4242 5509 1.303317 GGAAACGGTGATGCCCAGT 60.303 57.895 0.00 0.00 0.00 4.00
4243 5510 1.002134 AGGAAACGGTGATGCCCAG 60.002 57.895 0.00 0.00 0.00 4.45
4247 5515 2.750888 GGCGAGGAAACGGTGATGC 61.751 63.158 0.00 0.00 0.00 3.91
4255 5523 3.249837 AAGGGACCGGCGAGGAAAC 62.250 63.158 9.30 0.00 45.00 2.78
4298 5566 2.877168 CACCTACGCGAAGGACTACTAT 59.123 50.000 15.93 0.00 39.15 2.12
4442 5711 1.000993 AGAGAGGGTGGCTGTCGAT 59.999 57.895 0.00 0.00 0.00 3.59
4450 5719 3.374402 ACGCGACAGAGAGGGTGG 61.374 66.667 15.93 0.00 32.20 4.61
4467 5736 1.269723 CACCGAGCAGTCTAAGTGTCA 59.730 52.381 0.00 0.00 0.00 3.58
4469 5738 0.038159 GCACCGAGCAGTCTAAGTGT 60.038 55.000 0.00 0.00 44.79 3.55
4558 5827 1.442769 AGACATCATGGTGTTGCGTC 58.557 50.000 14.02 0.00 31.16 5.19
4560 5829 2.349580 CAGTAGACATCATGGTGTTGCG 59.650 50.000 14.02 0.00 31.16 4.85
4570 5839 2.455674 AAGTTGCGCAGTAGACATCA 57.544 45.000 11.31 0.00 0.00 3.07
4571 5840 5.292101 AGAATAAAGTTGCGCAGTAGACATC 59.708 40.000 11.31 6.41 0.00 3.06
4572 5841 5.178797 AGAATAAAGTTGCGCAGTAGACAT 58.821 37.500 11.31 0.00 0.00 3.06
4573 5842 4.566004 AGAATAAAGTTGCGCAGTAGACA 58.434 39.130 11.31 0.00 0.00 3.41
4574 5843 5.532025 AAGAATAAAGTTGCGCAGTAGAC 57.468 39.130 11.31 5.92 0.00 2.59
4575 5844 8.410912 TCTATAAGAATAAAGTTGCGCAGTAGA 58.589 33.333 11.31 0.00 0.00 2.59
4576 5845 8.480853 GTCTATAAGAATAAAGTTGCGCAGTAG 58.519 37.037 11.31 0.00 0.00 2.57
4577 5846 8.195436 AGTCTATAAGAATAAAGTTGCGCAGTA 58.805 33.333 11.31 2.22 0.00 2.74
4578 5847 7.042335 AGTCTATAAGAATAAAGTTGCGCAGT 58.958 34.615 11.31 0.00 0.00 4.40
4579 5848 7.470289 AGTCTATAAGAATAAAGTTGCGCAG 57.530 36.000 11.31 0.00 0.00 5.18
4580 5849 6.198403 CGAGTCTATAAGAATAAAGTTGCGCA 59.802 38.462 5.66 5.66 0.00 6.09
4581 5850 6.198591 ACGAGTCTATAAGAATAAAGTTGCGC 59.801 38.462 0.00 0.00 0.00 6.09
4582 5851 7.220300 ACACGAGTCTATAAGAATAAAGTTGCG 59.780 37.037 0.00 0.00 0.00 4.85
4583 5852 8.408743 ACACGAGTCTATAAGAATAAAGTTGC 57.591 34.615 0.00 0.00 0.00 4.17
4585 5854 9.367444 CCAACACGAGTCTATAAGAATAAAGTT 57.633 33.333 0.00 0.00 0.00 2.66
4586 5855 7.980099 CCCAACACGAGTCTATAAGAATAAAGT 59.020 37.037 0.00 0.00 0.00 2.66
4587 5856 7.042658 GCCCAACACGAGTCTATAAGAATAAAG 60.043 40.741 0.00 0.00 0.00 1.85
4588 5857 6.759827 GCCCAACACGAGTCTATAAGAATAAA 59.240 38.462 0.00 0.00 0.00 1.40
4589 5858 6.278363 GCCCAACACGAGTCTATAAGAATAA 58.722 40.000 0.00 0.00 0.00 1.40
4590 5859 5.221382 GGCCCAACACGAGTCTATAAGAATA 60.221 44.000 0.00 0.00 0.00 1.75
4591 5860 4.443034 GGCCCAACACGAGTCTATAAGAAT 60.443 45.833 0.00 0.00 0.00 2.40
4592 5861 3.118884 GGCCCAACACGAGTCTATAAGAA 60.119 47.826 0.00 0.00 0.00 2.52
4593 5862 2.429610 GGCCCAACACGAGTCTATAAGA 59.570 50.000 0.00 0.00 0.00 2.10
4594 5863 2.431057 AGGCCCAACACGAGTCTATAAG 59.569 50.000 0.00 0.00 0.00 1.73
4595 5864 2.429610 GAGGCCCAACACGAGTCTATAA 59.570 50.000 0.00 0.00 0.00 0.98
4596 5865 2.029623 GAGGCCCAACACGAGTCTATA 58.970 52.381 0.00 0.00 0.00 1.31
4597 5866 0.824759 GAGGCCCAACACGAGTCTAT 59.175 55.000 0.00 0.00 0.00 1.98
4598 5867 1.255667 GGAGGCCCAACACGAGTCTA 61.256 60.000 0.00 0.00 0.00 2.59
4599 5868 2.584391 GGAGGCCCAACACGAGTCT 61.584 63.158 0.00 0.00 0.00 3.24
4600 5869 2.047179 GGAGGCCCAACACGAGTC 60.047 66.667 0.00 0.00 0.00 3.36
4601 5870 2.397413 CTTGGAGGCCCAACACGAGT 62.397 60.000 0.00 0.00 46.94 4.18
4602 5871 1.672356 CTTGGAGGCCCAACACGAG 60.672 63.158 0.00 0.00 46.94 4.18
4603 5872 2.429930 CTTGGAGGCCCAACACGA 59.570 61.111 0.00 0.00 46.94 4.35
4604 5873 3.365265 GCTTGGAGGCCCAACACG 61.365 66.667 0.00 0.00 46.94 4.49
4605 5874 3.365265 CGCTTGGAGGCCCAACAC 61.365 66.667 0.00 0.00 46.94 3.32
4611 5880 3.909086 AACTCTGCGCTTGGAGGCC 62.909 63.158 22.09 0.00 34.22 5.19
4612 5881 1.518903 AAAACTCTGCGCTTGGAGGC 61.519 55.000 22.09 0.00 34.22 4.70
4613 5882 0.239347 CAAAACTCTGCGCTTGGAGG 59.761 55.000 22.09 10.10 34.22 4.30
4614 5883 0.947244 ACAAAACTCTGCGCTTGGAG 59.053 50.000 9.73 15.60 35.86 3.86
4615 5884 2.143122 CTACAAAACTCTGCGCTTGGA 58.857 47.619 9.73 0.00 0.00 3.53
4616 5885 1.197721 CCTACAAAACTCTGCGCTTGG 59.802 52.381 9.73 0.20 0.00 3.61
4617 5886 2.096218 GTCCTACAAAACTCTGCGCTTG 60.096 50.000 9.73 6.07 0.00 4.01
4618 5887 2.143925 GTCCTACAAAACTCTGCGCTT 58.856 47.619 9.73 0.00 0.00 4.68
4619 5888 1.070134 TGTCCTACAAAACTCTGCGCT 59.930 47.619 9.73 0.00 0.00 5.92
4620 5889 1.461127 CTGTCCTACAAAACTCTGCGC 59.539 52.381 0.00 0.00 0.00 6.09
4621 5890 2.755650 ACTGTCCTACAAAACTCTGCG 58.244 47.619 0.00 0.00 0.00 5.18
4622 5891 3.680458 GCTACTGTCCTACAAAACTCTGC 59.320 47.826 0.00 0.00 0.00 4.26
4623 5892 4.883083 TGCTACTGTCCTACAAAACTCTG 58.117 43.478 0.00 0.00 0.00 3.35
4624 5893 5.546621 TTGCTACTGTCCTACAAAACTCT 57.453 39.130 0.00 0.00 0.00 3.24
4625 5894 6.803154 AATTGCTACTGTCCTACAAAACTC 57.197 37.500 0.00 0.00 0.00 3.01
4626 5895 7.582667 AAAATTGCTACTGTCCTACAAAACT 57.417 32.000 0.00 0.00 0.00 2.66
4627 5896 7.381408 GGAAAAATTGCTACTGTCCTACAAAAC 59.619 37.037 0.00 0.00 0.00 2.43
4628 5897 7.286775 AGGAAAAATTGCTACTGTCCTACAAAA 59.713 33.333 0.00 0.00 32.24 2.44
4629 5898 6.775629 AGGAAAAATTGCTACTGTCCTACAAA 59.224 34.615 0.00 0.00 32.24 2.83
4630 5899 6.303839 AGGAAAAATTGCTACTGTCCTACAA 58.696 36.000 0.00 0.00 32.24 2.41
4631 5900 5.876357 AGGAAAAATTGCTACTGTCCTACA 58.124 37.500 0.00 0.00 32.24 2.74
4632 5901 5.938125 TGAGGAAAAATTGCTACTGTCCTAC 59.062 40.000 0.00 0.00 34.17 3.18
4633 5902 6.121776 TGAGGAAAAATTGCTACTGTCCTA 57.878 37.500 0.00 0.00 34.17 2.94
4634 5903 4.985538 TGAGGAAAAATTGCTACTGTCCT 58.014 39.130 0.00 0.00 36.73 3.85
4635 5904 5.241728 ACTTGAGGAAAAATTGCTACTGTCC 59.758 40.000 0.00 0.00 0.00 4.02
4636 5905 6.145535 CACTTGAGGAAAAATTGCTACTGTC 58.854 40.000 0.00 0.00 0.00 3.51
4637 5906 5.010012 CCACTTGAGGAAAAATTGCTACTGT 59.990 40.000 0.00 0.00 0.00 3.55
4638 5907 5.241506 TCCACTTGAGGAAAAATTGCTACTG 59.758 40.000 0.00 0.00 33.93 2.74
4639 5908 5.385198 TCCACTTGAGGAAAAATTGCTACT 58.615 37.500 0.00 0.00 33.93 2.57
4640 5909 5.705609 TCCACTTGAGGAAAAATTGCTAC 57.294 39.130 0.00 0.00 33.93 3.58
4641 5910 7.093945 GGTTATCCACTTGAGGAAAAATTGCTA 60.094 37.037 0.00 0.00 41.92 3.49
4642 5911 6.295292 GGTTATCCACTTGAGGAAAAATTGCT 60.295 38.462 0.00 0.00 41.92 3.91
4643 5912 5.869344 GGTTATCCACTTGAGGAAAAATTGC 59.131 40.000 0.00 0.00 41.92 3.56
4644 5913 7.232118 AGGTTATCCACTTGAGGAAAAATTG 57.768 36.000 0.00 0.00 41.92 2.32
4645 5914 8.950007 TTAGGTTATCCACTTGAGGAAAAATT 57.050 30.769 0.00 0.00 41.92 1.82
4646 5915 7.615757 CCTTAGGTTATCCACTTGAGGAAAAAT 59.384 37.037 0.00 0.00 41.92 1.82
4647 5916 6.946009 CCTTAGGTTATCCACTTGAGGAAAAA 59.054 38.462 0.00 0.00 41.92 1.94
4648 5917 6.045106 ACCTTAGGTTATCCACTTGAGGAAAA 59.955 38.462 0.00 0.00 34.76 2.29
4649 5918 5.550403 ACCTTAGGTTATCCACTTGAGGAAA 59.450 40.000 0.00 0.00 34.76 3.13
4650 5919 5.098663 ACCTTAGGTTATCCACTTGAGGAA 58.901 41.667 0.00 0.00 34.76 3.36
4651 5920 4.695606 ACCTTAGGTTATCCACTTGAGGA 58.304 43.478 0.00 0.00 35.40 3.71
4652 5921 5.437191 AACCTTAGGTTATCCACTTGAGG 57.563 43.478 15.90 0.00 44.94 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.