Multiple sequence alignment - TraesCS5B01G485700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G485700 chr5B 100.000 3679 0 0 1 3679 656924498 656928176 0.000000e+00 6794.0
1 TraesCS5B01G485700 chr5D 89.972 3261 180 59 1 3203 520908745 520911916 0.000000e+00 4074.0
2 TraesCS5B01G485700 chr5D 83.948 461 45 14 3222 3679 520911906 520912340 7.350000e-112 414.0
3 TraesCS5B01G485700 chr5D 81.699 306 38 13 1699 1998 423973631 423973924 4.750000e-59 239.0
4 TraesCS5B01G485700 chr5D 74.780 341 66 14 1323 1650 424033336 424033669 6.410000e-28 135.0
5 TraesCS5B01G485700 chr5D 85.714 98 9 4 223 316 205145281 205145185 8.410000e-17 99.0
6 TraesCS5B01G485700 chr5A 88.425 2134 156 46 1 2103 649440177 649442250 0.000000e+00 2488.0
7 TraesCS5B01G485700 chr5A 91.390 964 53 17 2110 3059 649449962 649450909 0.000000e+00 1293.0
8 TraesCS5B01G485700 chr5A 86.742 264 20 5 2953 3203 649450908 649451169 2.800000e-71 279.0
9 TraesCS5B01G485700 chr5A 87.879 198 19 5 3219 3414 649451155 649451349 1.030000e-55 228.0
10 TraesCS5B01G485700 chr5A 75.926 270 47 15 1375 1635 537626216 537626476 4.990000e-24 122.0
11 TraesCS5B01G485700 chr5A 82.828 99 11 4 223 316 495504319 495504416 2.350000e-12 84.2
12 TraesCS5B01G485700 chr4A 78.812 741 120 30 1295 2015 68126066 68125343 7.200000e-127 464.0
13 TraesCS5B01G485700 chr4A 74.265 680 120 33 1324 1998 68141484 68142113 6.140000e-58 235.0
14 TraesCS5B01G485700 chr4A 84.375 96 10 4 223 314 173759855 173759761 5.060000e-14 89.8
15 TraesCS5B01G485700 chr2D 77.350 702 114 32 1315 2007 131777735 131777070 1.250000e-99 374.0
16 TraesCS5B01G485700 chr2B 76.638 702 119 33 1315 2007 186311897 186312562 2.720000e-91 346.0
17 TraesCS5B01G485700 chr2B 86.463 229 26 4 1780 2007 185776765 185776541 2.840000e-61 246.0
18 TraesCS5B01G485700 chr2A 76.580 696 116 35 1322 2007 138827284 138826626 4.550000e-89 339.0
19 TraesCS5B01G485700 chr4D 74.118 680 121 36 1324 1998 386831198 386831827 2.860000e-56 230.0
20 TraesCS5B01G485700 chr4D 84.211 95 10 4 226 316 353272645 353272552 1.820000e-13 87.9
21 TraesCS5B01G485700 chr7B 84.513 226 29 6 1776 1998 709511194 709511416 6.190000e-53 219.0
22 TraesCS5B01G485700 chr7B 83.673 98 11 4 223 316 257064287 257064191 1.820000e-13 87.9
23 TraesCS5B01G485700 chr7B 80.531 113 19 3 1523 1632 590500845 590500733 2.350000e-12 84.2
24 TraesCS5B01G485700 chr7B 81.081 111 16 4 223 329 609739842 609739951 2.350000e-12 84.2
25 TraesCS5B01G485700 chr4B 75.463 216 41 9 1419 1629 494692232 494692024 1.090000e-15 95.3
26 TraesCS5B01G485700 chr3A 84.848 99 9 4 223 316 74633471 74633374 1.090000e-15 95.3
27 TraesCS5B01G485700 chr3D 83.333 102 11 5 220 316 115849183 115849283 5.060000e-14 89.8
28 TraesCS5B01G485700 chr7D 79.646 113 20 3 1523 1632 547457920 547457808 1.100000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G485700 chr5B 656924498 656928176 3678 False 6794 6794 100.000000 1 3679 1 chr5B.!!$F1 3678
1 TraesCS5B01G485700 chr5D 520908745 520912340 3595 False 2244 4074 86.960000 1 3679 2 chr5D.!!$F3 3678
2 TraesCS5B01G485700 chr5A 649440177 649442250 2073 False 2488 2488 88.425000 1 2103 1 chr5A.!!$F3 2102
3 TraesCS5B01G485700 chr5A 649449962 649451349 1387 False 600 1293 88.670333 2110 3414 3 chr5A.!!$F4 1304
4 TraesCS5B01G485700 chr4A 68125343 68126066 723 True 464 464 78.812000 1295 2015 1 chr4A.!!$R1 720
5 TraesCS5B01G485700 chr4A 68141484 68142113 629 False 235 235 74.265000 1324 1998 1 chr4A.!!$F1 674
6 TraesCS5B01G485700 chr2D 131777070 131777735 665 True 374 374 77.350000 1315 2007 1 chr2D.!!$R1 692
7 TraesCS5B01G485700 chr2B 186311897 186312562 665 False 346 346 76.638000 1315 2007 1 chr2B.!!$F1 692
8 TraesCS5B01G485700 chr2A 138826626 138827284 658 True 339 339 76.580000 1322 2007 1 chr2A.!!$R1 685
9 TraesCS5B01G485700 chr4D 386831198 386831827 629 False 230 230 74.118000 1324 1998 1 chr4D.!!$F1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 897 0.104120 TCACATCGGACGGCCAATAG 59.896 55.0 8.76 0.0 0.0 1.73 F
1235 1287 0.788391 AGTTCGTTCAAATCGTCCGC 59.212 50.0 0.00 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2139 0.959372 AGAACGACGGACATCTCGGT 60.959 55.000 0.0 0.0 34.07 4.69 R
3213 3474 1.749063 GGAAAATAGCAAACCTCCCCG 59.251 52.381 0.0 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 3.138798 GGCTCTACGTCGCTCCCA 61.139 66.667 0.00 0.00 0.00 4.37
57 59 1.451567 CTACGTCGCTCCCAGGAGA 60.452 63.158 18.08 0.00 44.53 3.71
83 85 0.893270 CCCGCCCACAGTCAAAATCA 60.893 55.000 0.00 0.00 0.00 2.57
131 133 2.215451 AAATGGCGCCTGGATCCACT 62.215 55.000 29.70 0.00 31.94 4.00
151 153 0.416231 AGGGTTGGTGGCTCTAGGTA 59.584 55.000 0.00 0.00 0.00 3.08
158 160 1.171308 GTGGCTCTAGGTACGTCACA 58.829 55.000 0.00 0.00 0.00 3.58
161 163 1.542915 GGCTCTAGGTACGTCACAACA 59.457 52.381 0.00 0.00 0.00 3.33
169 171 0.386476 TACGTCACAACAGCCTCGTT 59.614 50.000 0.00 0.00 33.70 3.85
175 177 3.006672 CAACAGCCTCGTTGGAAGT 57.993 52.632 3.87 0.00 42.10 3.01
212 214 0.393267 GGCGCAACCTTGGTATGGTA 60.393 55.000 10.83 0.00 36.69 3.25
236 238 3.288092 GGAACCCTGATGACCCATAAAC 58.712 50.000 0.00 0.00 0.00 2.01
262 264 5.568620 AGGGGATCTATCGTAGCATTTTT 57.431 39.130 0.00 0.00 0.00 1.94
292 298 1.264288 GTCGAACCCAACAAAGAGCAG 59.736 52.381 0.00 0.00 0.00 4.24
316 322 8.830580 CAGAGAGAATTGACAAGTAGTTTTCAA 58.169 33.333 12.95 12.95 32.71 2.69
318 324 7.630924 AGAGAATTGACAAGTAGTTTTCAACG 58.369 34.615 12.85 0.00 36.23 4.10
334 340 7.483691 AGTTTTCAACGATGTTTCACTGTAAAC 59.516 33.333 0.00 0.00 36.89 2.01
397 403 2.187946 GGGTGTCTCTGGCGGATG 59.812 66.667 0.00 0.00 0.00 3.51
412 418 1.510844 GATGCCGCGGGATTTGTTT 59.489 52.632 33.44 11.34 0.00 2.83
415 421 2.631580 GCCGCGGGATTTGTTTGGA 61.632 57.895 29.38 0.00 0.00 3.53
433 439 4.387026 TGGAGTTGGTCTTCAATGGATT 57.613 40.909 0.00 0.00 37.73 3.01
444 450 6.295236 GGTCTTCAATGGATTTGTTTGGATCA 60.295 38.462 0.00 0.00 36.65 2.92
445 451 7.325694 GTCTTCAATGGATTTGTTTGGATCAT 58.674 34.615 0.00 0.00 36.65 2.45
449 461 7.451732 TCAATGGATTTGTTTGGATCATGTTT 58.548 30.769 0.00 0.00 36.65 2.83
472 484 4.034279 TGTTTTTCGTTCGGGTGTTTCTAG 59.966 41.667 0.00 0.00 0.00 2.43
507 521 8.996024 TTTTGATCTATACACGTCTTCATCAA 57.004 30.769 0.00 0.00 0.00 2.57
517 531 5.288712 ACACGTCTTCATCAACGATGATTAC 59.711 40.000 5.30 7.92 46.52 1.89
518 532 4.804139 ACGTCTTCATCAACGATGATTACC 59.196 41.667 5.30 0.00 46.52 2.85
522 536 5.518847 TCTTCATCAACGATGATTACCGTTC 59.481 40.000 5.30 0.00 46.52 3.95
529 543 3.056393 ACGATGATTACCGTTCTGTTCCA 60.056 43.478 0.00 0.00 35.21 3.53
532 546 5.657474 GATGATTACCGTTCTGTTCCACTA 58.343 41.667 0.00 0.00 0.00 2.74
545 559 4.290093 TGTTCCACTAGTCCTATGATGCT 58.710 43.478 0.00 0.00 0.00 3.79
550 564 5.011125 TCCACTAGTCCTATGATGCTTTAGC 59.989 44.000 0.00 0.00 42.50 3.09
551 565 4.920340 CACTAGTCCTATGATGCTTTAGCG 59.080 45.833 0.00 0.00 45.83 4.26
552 566 4.827835 ACTAGTCCTATGATGCTTTAGCGA 59.172 41.667 0.00 0.00 45.83 4.93
553 567 3.983741 AGTCCTATGATGCTTTAGCGAC 58.016 45.455 0.00 0.00 45.83 5.19
554 568 2.726760 GTCCTATGATGCTTTAGCGACG 59.273 50.000 0.00 0.00 45.83 5.12
555 569 2.621526 TCCTATGATGCTTTAGCGACGA 59.378 45.455 0.00 0.00 45.83 4.20
556 570 2.726760 CCTATGATGCTTTAGCGACGAC 59.273 50.000 0.00 0.00 45.83 4.34
557 571 2.586258 ATGATGCTTTAGCGACGACT 57.414 45.000 0.00 0.00 45.83 4.18
558 572 2.363788 TGATGCTTTAGCGACGACTT 57.636 45.000 0.00 0.00 45.83 3.01
559 573 2.683968 TGATGCTTTAGCGACGACTTT 58.316 42.857 0.00 0.00 45.83 2.66
560 574 2.666508 TGATGCTTTAGCGACGACTTTC 59.333 45.455 0.00 0.00 45.83 2.62
561 575 2.433868 TGCTTTAGCGACGACTTTCT 57.566 45.000 0.00 0.00 45.83 2.52
562 576 2.325761 TGCTTTAGCGACGACTTTCTC 58.674 47.619 0.00 0.00 45.83 2.87
563 577 2.287970 TGCTTTAGCGACGACTTTCTCA 60.288 45.455 0.00 0.00 45.83 3.27
564 578 2.924290 GCTTTAGCGACGACTTTCTCAT 59.076 45.455 0.00 0.00 0.00 2.90
565 579 3.368236 GCTTTAGCGACGACTTTCTCATT 59.632 43.478 0.00 0.00 0.00 2.57
566 580 4.722346 GCTTTAGCGACGACTTTCTCATTG 60.722 45.833 0.00 0.00 0.00 2.82
567 581 2.440539 AGCGACGACTTTCTCATTGT 57.559 45.000 0.00 0.00 0.00 2.71
568 582 2.329379 AGCGACGACTTTCTCATTGTC 58.671 47.619 0.00 0.00 0.00 3.18
569 583 2.029828 AGCGACGACTTTCTCATTGTCT 60.030 45.455 0.00 0.00 0.00 3.41
570 584 3.190744 AGCGACGACTTTCTCATTGTCTA 59.809 43.478 0.00 0.00 0.00 2.59
628 663 0.677731 ATGATGGTGGTGTGCCTTCG 60.678 55.000 0.00 0.00 34.16 3.79
636 671 1.741770 GTGTGCCTTCGGATCGCTT 60.742 57.895 0.00 0.00 0.00 4.68
641 676 1.148759 GCCTTCGGATCGCTTCAGTC 61.149 60.000 0.00 0.00 0.00 3.51
652 688 2.292569 TCGCTTCAGTCTTGTAGTCGTT 59.707 45.455 0.00 0.00 0.00 3.85
653 689 3.499537 TCGCTTCAGTCTTGTAGTCGTTA 59.500 43.478 0.00 0.00 0.00 3.18
798 834 0.247419 CGACAGATGTGCATTGCGTC 60.247 55.000 3.84 3.36 0.00 5.19
852 897 0.104120 TCACATCGGACGGCCAATAG 59.896 55.000 8.76 0.00 0.00 1.73
896 941 7.797123 CCAGAAATTAAGAAAGTTACACGTCAC 59.203 37.037 0.00 0.00 0.00 3.67
943 989 2.977580 TCTTATCTGGCATGCCTCATCT 59.022 45.455 35.53 18.30 36.94 2.90
1011 1060 2.049248 CACACCAATTGCGGCCAC 60.049 61.111 2.24 0.00 0.00 5.01
1012 1061 2.520500 ACACCAATTGCGGCCACA 60.521 55.556 2.24 0.00 0.00 4.17
1013 1062 2.049248 CACCAATTGCGGCCACAC 60.049 61.111 2.24 0.00 0.00 3.82
1196 1248 3.418913 CGCAAATCGGTCCACGCA 61.419 61.111 0.00 0.00 43.86 5.24
1197 1249 2.749865 CGCAAATCGGTCCACGCAT 61.750 57.895 0.00 0.00 43.86 4.73
1230 1282 7.216317 GGATGTAATTCAAGTTCGTTCAAATCG 59.784 37.037 0.00 0.00 0.00 3.34
1235 1287 0.788391 AGTTCGTTCAAATCGTCCGC 59.212 50.000 0.00 0.00 0.00 5.54
1248 1303 3.034721 TCGTCCGCTCAATTTACTTGT 57.965 42.857 0.00 0.00 36.20 3.16
1255 1310 4.382754 CCGCTCAATTTACTTGTTTTGCTC 59.617 41.667 0.00 0.00 36.20 4.26
1986 2087 3.592814 TCTCCGCCTACGCCATCG 61.593 66.667 0.00 0.00 42.43 3.84
2035 2147 2.880879 CCACGCGTCACCGAGATG 60.881 66.667 9.86 0.00 37.33 2.90
2038 2150 2.579787 CGCGTCACCGAGATGTCC 60.580 66.667 0.00 0.00 35.78 4.02
2039 2151 2.579787 GCGTCACCGAGATGTCCG 60.580 66.667 0.00 0.00 35.60 4.79
2040 2152 2.875485 CGTCACCGAGATGTCCGT 59.125 61.111 0.00 0.00 35.63 4.69
2046 2158 0.959372 ACCGAGATGTCCGTCGTTCT 60.959 55.000 0.00 0.00 34.27 3.01
2049 2161 1.135774 CGAGATGTCCGTCGTTCTTGA 60.136 52.381 0.00 0.00 0.00 3.02
2050 2162 2.667448 CGAGATGTCCGTCGTTCTTGAA 60.667 50.000 0.00 0.00 0.00 2.69
2052 2164 1.725164 GATGTCCGTCGTTCTTGAACC 59.275 52.381 7.78 0.00 0.00 3.62
2053 2165 0.748450 TGTCCGTCGTTCTTGAACCT 59.252 50.000 7.78 0.00 0.00 3.50
2103 2221 1.279846 CCATGGCTCCCAAAAGCAAAT 59.720 47.619 0.00 0.00 44.35 2.32
2105 2223 0.686224 TGGCTCCCAAAAGCAAATGG 59.314 50.000 0.00 0.00 44.35 3.16
2110 2228 3.250762 GCTCCCAAAAGCAAATGGAAAAC 59.749 43.478 3.49 0.00 42.05 2.43
2133 2251 5.071115 ACATCTTTTGACCTCTAGATAGCCC 59.929 44.000 0.00 0.00 0.00 5.19
2217 2335 4.595538 AACAACGACCTCGCCGCA 62.596 61.111 0.00 0.00 44.43 5.69
2282 2400 2.793278 ACAGTTCCAAACCAAATCGC 57.207 45.000 0.00 0.00 0.00 4.58
2428 2547 1.282248 ACTGACGTGTACGCATGCAC 61.282 55.000 19.57 9.97 44.43 4.57
2440 2559 2.872245 ACGCATGCACACTCCATATTAC 59.128 45.455 19.57 0.00 0.00 1.89
2480 2607 5.444586 GTGCTGACGATACGTTTCATTTA 57.555 39.130 6.81 0.00 41.37 1.40
2896 3030 2.246739 CGTATGGACGGGCATGCAG 61.247 63.158 21.36 15.25 45.63 4.41
3044 3291 7.259290 TCAAACAAGTGGACTTAGTTTCATC 57.741 36.000 12.91 0.00 36.27 2.92
3086 3346 7.597369 GGTTTGTAAATTACTGACCATTGGAAC 59.403 37.037 10.37 3.79 35.69 3.62
3122 3382 4.143200 GCGTGATGTGTACGAATCTTGAAA 60.143 41.667 1.32 0.00 43.82 2.69
3183 3444 9.750882 CAGATGCATACATAATAATCGTCTTTG 57.249 33.333 0.00 0.00 36.35 2.77
3193 3454 9.840427 CATAATAATCGTCTTTGTCTTTGGTTT 57.160 29.630 0.00 0.00 0.00 3.27
3195 3456 8.574196 AATAATCGTCTTTGTCTTTGGTTTTG 57.426 30.769 0.00 0.00 0.00 2.44
3196 3457 3.765026 TCGTCTTTGTCTTTGGTTTTGC 58.235 40.909 0.00 0.00 0.00 3.68
3197 3458 3.442273 TCGTCTTTGTCTTTGGTTTTGCT 59.558 39.130 0.00 0.00 0.00 3.91
3198 3459 4.636648 TCGTCTTTGTCTTTGGTTTTGCTA 59.363 37.500 0.00 0.00 0.00 3.49
3199 3460 5.298276 TCGTCTTTGTCTTTGGTTTTGCTAT 59.702 36.000 0.00 0.00 0.00 2.97
3200 3461 5.977129 CGTCTTTGTCTTTGGTTTTGCTATT 59.023 36.000 0.00 0.00 0.00 1.73
3201 3462 6.475402 CGTCTTTGTCTTTGGTTTTGCTATTT 59.525 34.615 0.00 0.00 0.00 1.40
3202 3463 7.010091 CGTCTTTGTCTTTGGTTTTGCTATTTT 59.990 33.333 0.00 0.00 0.00 1.82
3203 3464 8.328146 GTCTTTGTCTTTGGTTTTGCTATTTTC 58.672 33.333 0.00 0.00 0.00 2.29
3204 3465 8.257306 TCTTTGTCTTTGGTTTTGCTATTTTCT 58.743 29.630 0.00 0.00 0.00 2.52
3205 3466 8.785329 TTTGTCTTTGGTTTTGCTATTTTCTT 57.215 26.923 0.00 0.00 0.00 2.52
3206 3467 8.785329 TTGTCTTTGGTTTTGCTATTTTCTTT 57.215 26.923 0.00 0.00 0.00 2.52
3207 3468 8.785329 TGTCTTTGGTTTTGCTATTTTCTTTT 57.215 26.923 0.00 0.00 0.00 2.27
3208 3469 9.877178 TGTCTTTGGTTTTGCTATTTTCTTTTA 57.123 25.926 0.00 0.00 0.00 1.52
3217 3478 8.989653 TTTGCTATTTTCTTTTATTTACGGGG 57.010 30.769 0.00 0.00 0.00 5.73
3218 3479 7.941431 TGCTATTTTCTTTTATTTACGGGGA 57.059 32.000 0.00 0.00 0.00 4.81
3219 3480 7.992008 TGCTATTTTCTTTTATTTACGGGGAG 58.008 34.615 0.00 0.00 0.00 4.30
3220 3481 7.067737 TGCTATTTTCTTTTATTTACGGGGAGG 59.932 37.037 0.00 0.00 0.00 4.30
3221 3482 7.067859 GCTATTTTCTTTTATTTACGGGGAGGT 59.932 37.037 0.00 0.00 0.00 3.85
3232 3493 2.443416 ACGGGGAGGTTTGCTATTTTC 58.557 47.619 0.00 0.00 0.00 2.29
3242 3503 5.716703 AGGTTTGCTATTTTCCAGCTACATT 59.283 36.000 0.00 0.00 39.83 2.71
3247 3508 7.938140 TGCTATTTTCCAGCTACATTAAACT 57.062 32.000 0.00 0.00 39.83 2.66
3281 3542 4.024809 GTCTGTCACTTTTTCCTTCTTCCG 60.025 45.833 0.00 0.00 0.00 4.30
3283 3544 3.875134 TGTCACTTTTTCCTTCTTCCGTC 59.125 43.478 0.00 0.00 0.00 4.79
3284 3545 4.127907 GTCACTTTTTCCTTCTTCCGTCT 58.872 43.478 0.00 0.00 0.00 4.18
3293 3554 3.895656 TCCTTCTTCCGTCTTTCTTCTCA 59.104 43.478 0.00 0.00 0.00 3.27
3294 3555 4.344102 TCCTTCTTCCGTCTTTCTTCTCAA 59.656 41.667 0.00 0.00 0.00 3.02
3299 3560 0.092014 CGTCTTTCTTCTCAAGCGCG 59.908 55.000 0.00 0.00 0.00 6.86
3370 3632 6.980978 TCTATCTTAAGGAAAGCAACATCTCG 59.019 38.462 1.85 0.00 34.97 4.04
3387 3650 5.890985 ACATCTCGATCATCTATCTTAGGGG 59.109 44.000 0.00 0.00 31.87 4.79
3390 3653 6.736581 TCTCGATCATCTATCTTAGGGGAAT 58.263 40.000 0.00 0.00 31.87 3.01
3393 3656 7.128751 TCGATCATCTATCTTAGGGGAATCAT 58.871 38.462 0.00 0.00 31.87 2.45
3398 3661 5.659503 TCTATCTTAGGGGAATCATCAGCT 58.340 41.667 0.00 0.00 0.00 4.24
3407 3670 4.268359 GGGAATCATCAGCTCCATTATCC 58.732 47.826 0.00 0.00 0.00 2.59
3416 3679 4.533707 TCAGCTCCATTATCCATCTTAGGG 59.466 45.833 0.00 0.00 0.00 3.53
3421 3684 3.562176 CCATTATCCATCTTAGGGGTGGC 60.562 52.174 0.00 0.00 33.01 5.01
3426 3689 1.766461 ATCTTAGGGGTGGCGGAGG 60.766 63.158 0.00 0.00 0.00 4.30
3443 3706 2.348998 GGGGGATGCAGCGGATAG 59.651 66.667 0.00 0.00 0.00 2.08
3463 3726 2.025418 CGGAGGTTTTCGACGGTGG 61.025 63.158 0.00 0.00 0.00 4.61
3466 3729 1.422388 GAGGTTTTCGACGGTGGTAC 58.578 55.000 0.00 0.00 0.00 3.34
3485 3748 1.679898 GGGGATTAGAGGGATGGCG 59.320 63.158 0.00 0.00 0.00 5.69
3510 3774 0.659957 GATGGCCAGAAACGAGATGC 59.340 55.000 13.05 0.00 0.00 3.91
3526 3790 4.097361 GCGGGAGGTTGAGGGGAC 62.097 72.222 0.00 0.00 0.00 4.46
3527 3791 3.771160 CGGGAGGTTGAGGGGACG 61.771 72.222 0.00 0.00 0.00 4.79
3528 3792 2.284405 GGGAGGTTGAGGGGACGA 60.284 66.667 0.00 0.00 0.00 4.20
3541 3805 4.047059 GACGACGGGGCAACGAGA 62.047 66.667 7.82 0.00 37.61 4.04
3543 3807 4.052229 CGACGGGGCAACGAGACT 62.052 66.667 7.82 0.00 37.61 3.24
3591 3855 0.967380 GGGTGGAGGCAAGTGGATTG 60.967 60.000 0.00 0.00 42.20 2.67
3592 3856 0.967380 GGTGGAGGCAAGTGGATTGG 60.967 60.000 0.00 0.00 39.47 3.16
3593 3857 0.967380 GTGGAGGCAAGTGGATTGGG 60.967 60.000 0.00 0.00 39.47 4.12
3594 3858 1.384191 GGAGGCAAGTGGATTGGGT 59.616 57.895 0.00 0.00 39.47 4.51
3595 3859 0.967380 GGAGGCAAGTGGATTGGGTG 60.967 60.000 0.00 0.00 39.47 4.61
3596 3860 0.967380 GAGGCAAGTGGATTGGGTGG 60.967 60.000 0.00 0.00 39.47 4.61
3597 3861 1.984026 GGCAAGTGGATTGGGTGGG 60.984 63.158 0.00 0.00 39.47 4.61
3598 3862 1.984026 GCAAGTGGATTGGGTGGGG 60.984 63.158 0.00 0.00 39.47 4.96
3599 3863 1.464722 CAAGTGGATTGGGTGGGGT 59.535 57.895 0.00 0.00 35.08 4.95
3607 3871 4.726254 TGGGTGGGGTAGGTCGGG 62.726 72.222 0.00 0.00 0.00 5.14
3618 3882 2.449967 TAGGTCGGGGGTTGCAGAGA 62.450 60.000 0.00 0.00 0.00 3.10
3620 3884 1.376037 GTCGGGGGTTGCAGAGAAG 60.376 63.158 0.00 0.00 0.00 2.85
3628 3892 2.087646 GGTTGCAGAGAAGGATGAACC 58.912 52.381 0.00 0.00 39.35 3.62
3670 3934 0.321996 ACGCTTGGGAGGAAGAAGAC 59.678 55.000 0.00 0.00 0.00 3.01
3671 3935 0.737715 CGCTTGGGAGGAAGAAGACG 60.738 60.000 0.00 0.00 0.00 4.18
3672 3936 0.608640 GCTTGGGAGGAAGAAGACGA 59.391 55.000 0.00 0.00 0.00 4.20
3673 3937 1.673329 GCTTGGGAGGAAGAAGACGAC 60.673 57.143 0.00 0.00 0.00 4.34
3674 3938 1.618837 CTTGGGAGGAAGAAGACGACA 59.381 52.381 0.00 0.00 0.00 4.35
3675 3939 1.938585 TGGGAGGAAGAAGACGACAT 58.061 50.000 0.00 0.00 0.00 3.06
3676 3940 1.550524 TGGGAGGAAGAAGACGACATG 59.449 52.381 0.00 0.00 0.00 3.21
3677 3941 1.550976 GGGAGGAAGAAGACGACATGT 59.449 52.381 0.00 0.00 0.00 3.21
3678 3942 2.611518 GGAGGAAGAAGACGACATGTG 58.388 52.381 1.15 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 2.282958 TTCTCCTGGGAGCGACGT 60.283 61.111 11.51 0.00 41.71 4.34
71 73 3.508793 CCTGCTGGATTGATTTTGACTGT 59.491 43.478 2.92 0.00 34.57 3.55
83 85 3.028850 CACAATGGATTCCTGCTGGATT 58.971 45.455 13.72 9.96 42.81 3.01
131 133 0.416231 ACCTAGAGCCACCAACCCTA 59.584 55.000 0.00 0.00 0.00 3.53
134 136 0.175073 CGTACCTAGAGCCACCAACC 59.825 60.000 0.00 0.00 0.00 3.77
151 153 1.143183 AACGAGGCTGTTGTGACGT 59.857 52.632 0.00 0.00 35.56 4.34
158 160 0.535102 CCACTTCCAACGAGGCTGTT 60.535 55.000 0.00 0.00 37.29 3.16
161 163 1.071471 CACCACTTCCAACGAGGCT 59.929 57.895 0.00 0.00 37.29 4.58
212 214 0.475632 TGGGTCATCAGGGTTCCACT 60.476 55.000 0.00 0.00 0.00 4.00
236 238 5.860941 ATGCTACGATAGATCCCCTATTG 57.139 43.478 0.00 0.00 42.50 1.90
262 264 4.515361 TGTTGGGTTCGACACTCTTTTAA 58.485 39.130 0.00 0.00 32.62 1.52
263 265 4.139859 TGTTGGGTTCGACACTCTTTTA 57.860 40.909 0.00 0.00 32.62 1.52
265 267 2.702592 TGTTGGGTTCGACACTCTTT 57.297 45.000 0.00 0.00 32.62 2.52
292 298 7.794349 CGTTGAAAACTACTTGTCAATTCTCTC 59.206 37.037 0.00 0.00 46.99 3.20
316 322 4.748102 ACATCGTTTACAGTGAAACATCGT 59.252 37.500 14.42 7.62 41.43 3.73
318 324 7.541091 TCTCTACATCGTTTACAGTGAAACATC 59.459 37.037 14.42 0.00 41.43 3.06
334 340 5.106277 TGTTAGACACACCTTCTCTACATCG 60.106 44.000 0.00 0.00 0.00 3.84
397 403 2.126110 CCAAACAAATCCCGCGGC 60.126 61.111 22.85 0.00 0.00 6.53
412 418 4.387026 AATCCATTGAAGACCAACTCCA 57.613 40.909 0.00 0.00 37.63 3.86
415 421 6.282930 CAAACAAATCCATTGAAGACCAACT 58.717 36.000 0.00 0.00 41.85 3.16
433 439 6.591834 ACGAAAAACAAACATGATCCAAACAA 59.408 30.769 0.00 0.00 0.00 2.83
444 450 3.119424 ACACCCGAACGAAAAACAAACAT 60.119 39.130 0.00 0.00 0.00 2.71
445 451 2.228343 ACACCCGAACGAAAAACAAACA 59.772 40.909 0.00 0.00 0.00 2.83
449 461 2.748532 AGAAACACCCGAACGAAAAACA 59.251 40.909 0.00 0.00 0.00 2.83
507 521 3.056393 TGGAACAGAACGGTAATCATCGT 60.056 43.478 0.00 0.00 41.71 3.73
517 531 1.893801 AGGACTAGTGGAACAGAACGG 59.106 52.381 0.00 0.00 41.80 4.44
518 532 4.398358 TCATAGGACTAGTGGAACAGAACG 59.602 45.833 0.00 0.00 41.80 3.95
522 536 4.343526 AGCATCATAGGACTAGTGGAACAG 59.656 45.833 0.00 0.00 41.80 3.16
529 543 4.827835 TCGCTAAAGCATCATAGGACTAGT 59.172 41.667 0.00 0.00 42.21 2.57
532 546 3.551046 CGTCGCTAAAGCATCATAGGACT 60.551 47.826 2.44 0.00 42.21 3.85
545 559 4.304110 ACAATGAGAAAGTCGTCGCTAAA 58.696 39.130 0.00 0.00 0.00 1.85
550 564 8.893884 GTTATATAGACAATGAGAAAGTCGTCG 58.106 37.037 0.00 0.00 37.36 5.12
551 565 9.731819 TGTTATATAGACAATGAGAAAGTCGTC 57.268 33.333 0.00 0.00 37.36 4.20
559 573 9.056005 GCAAACCATGTTATATAGACAATGAGA 57.944 33.333 0.00 0.00 0.00 3.27
560 574 8.292448 GGCAAACCATGTTATATAGACAATGAG 58.708 37.037 0.00 0.00 35.26 2.90
561 575 7.230510 GGGCAAACCATGTTATATAGACAATGA 59.769 37.037 0.00 0.00 39.85 2.57
562 576 7.014134 TGGGCAAACCATGTTATATAGACAATG 59.986 37.037 0.00 0.00 46.80 2.82
563 577 7.066142 TGGGCAAACCATGTTATATAGACAAT 58.934 34.615 0.00 0.00 46.80 2.71
564 578 6.427441 TGGGCAAACCATGTTATATAGACAA 58.573 36.000 0.00 0.00 46.80 3.18
565 579 6.007485 TGGGCAAACCATGTTATATAGACA 57.993 37.500 0.00 1.83 46.80 3.41
593 628 3.430790 CCATCATCGCTCTTCACTTACCA 60.431 47.826 0.00 0.00 0.00 3.25
628 663 3.440228 GACTACAAGACTGAAGCGATCC 58.560 50.000 0.00 0.00 0.00 3.36
636 671 6.072838 CCACTTAGTAACGACTACAAGACTGA 60.073 42.308 0.00 0.00 37.91 3.41
641 676 8.976986 ATAAACCACTTAGTAACGACTACAAG 57.023 34.615 0.00 0.66 37.91 3.16
721 757 9.964354 TGAAAAGAATTCCTGATCTATTTCTCA 57.036 29.630 0.65 0.00 31.47 3.27
915 961 6.208007 TGAGGCATGCCAGATAAGATATTTTG 59.792 38.462 37.18 0.00 38.92 2.44
1193 1245 5.299582 TGAATTACATCCATGCATATGCG 57.700 39.130 22.21 9.26 45.83 4.73
1194 1246 6.684686 ACTTGAATTACATCCATGCATATGC 58.315 36.000 21.09 21.09 42.50 3.14
1195 1247 7.536281 CGAACTTGAATTACATCCATGCATATG 59.464 37.037 0.00 3.04 0.00 1.78
1196 1248 7.229306 ACGAACTTGAATTACATCCATGCATAT 59.771 33.333 0.00 0.00 0.00 1.78
1197 1249 6.542005 ACGAACTTGAATTACATCCATGCATA 59.458 34.615 0.00 0.00 0.00 3.14
1207 1259 6.950545 ACGATTTGAACGAACTTGAATTACA 58.049 32.000 0.00 0.00 34.70 2.41
1230 1282 4.148174 GCAAAACAAGTAAATTGAGCGGAC 59.852 41.667 0.00 0.00 41.83 4.79
1235 1287 6.925165 ACCATGAGCAAAACAAGTAAATTGAG 59.075 34.615 0.00 0.00 41.83 3.02
1248 1303 2.361757 CAGTGACCAACCATGAGCAAAA 59.638 45.455 0.00 0.00 0.00 2.44
1255 1310 4.074259 TGAAGAATCAGTGACCAACCATG 58.926 43.478 0.00 0.00 0.00 3.66
2027 2139 0.959372 AGAACGACGGACATCTCGGT 60.959 55.000 0.00 0.00 34.07 4.69
2035 2147 1.861971 AAGGTTCAAGAACGACGGAC 58.138 50.000 6.84 0.00 42.02 4.79
2038 2150 4.011058 ACAAAAAGGTTCAAGAACGACG 57.989 40.909 6.84 0.00 42.02 5.12
2039 2151 4.976987 TGACAAAAAGGTTCAAGAACGAC 58.023 39.130 6.84 0.00 42.02 4.34
2040 2152 5.630661 TTGACAAAAAGGTTCAAGAACGA 57.369 34.783 6.84 0.00 42.02 3.85
2046 2158 6.992715 TCTTTTGGTTTGACAAAAAGGTTCAA 59.007 30.769 16.54 0.00 46.21 2.69
2049 2161 6.292150 TGTCTTTTGGTTTGACAAAAAGGTT 58.708 32.000 16.54 0.00 46.21 3.50
2050 2162 5.859495 TGTCTTTTGGTTTGACAAAAAGGT 58.141 33.333 16.54 0.00 46.21 3.50
2052 2164 7.290118 CACTTGTCTTTTGGTTTGACAAAAAG 58.710 34.615 12.39 12.39 46.21 2.27
2053 2165 6.293135 GCACTTGTCTTTTGGTTTGACAAAAA 60.293 34.615 1.27 0.00 46.21 1.94
2103 2221 6.837312 TCTAGAGGTCAAAAGATGTTTTCCA 58.163 36.000 8.09 0.00 33.35 3.53
2105 2223 8.608317 GCTATCTAGAGGTCAAAAGATGTTTTC 58.392 37.037 0.00 0.00 33.35 2.29
2110 2228 5.512232 GGGGCTATCTAGAGGTCAAAAGATG 60.512 48.000 0.00 0.00 31.38 2.90
2440 2559 7.345192 GTCAGCACGAAATGTTAATGGTATAG 58.655 38.462 0.00 0.00 0.00 1.31
2476 2603 4.394610 TCACGCTGCACAACACATATAAAT 59.605 37.500 0.00 0.00 0.00 1.40
2477 2604 3.748568 TCACGCTGCACAACACATATAAA 59.251 39.130 0.00 0.00 0.00 1.40
2480 2607 1.807139 TCACGCTGCACAACACATAT 58.193 45.000 0.00 0.00 0.00 1.78
2761 2888 2.307098 CCCCATGTCCTCTCTCTGTTTT 59.693 50.000 0.00 0.00 0.00 2.43
2972 3106 9.517609 CCTATAAAACTGTCTGATGTAGTACAC 57.482 37.037 4.80 0.75 0.00 2.90
3053 3304 7.070074 TGGTCAGTAATTTACAAACCCAAACAT 59.930 33.333 19.52 0.00 35.72 2.71
3122 3382 6.062258 ACACCCTAAACTGCAACTATACAT 57.938 37.500 0.00 0.00 0.00 2.29
3193 3454 8.350852 TCCCCGTAAATAAAAGAAAATAGCAA 57.649 30.769 0.00 0.00 0.00 3.91
3194 3455 7.067737 CCTCCCCGTAAATAAAAGAAAATAGCA 59.932 37.037 0.00 0.00 0.00 3.49
3195 3456 7.067859 ACCTCCCCGTAAATAAAAGAAAATAGC 59.932 37.037 0.00 0.00 0.00 2.97
3196 3457 8.515695 ACCTCCCCGTAAATAAAAGAAAATAG 57.484 34.615 0.00 0.00 0.00 1.73
3197 3458 8.882557 AACCTCCCCGTAAATAAAAGAAAATA 57.117 30.769 0.00 0.00 0.00 1.40
3198 3459 7.786046 AACCTCCCCGTAAATAAAAGAAAAT 57.214 32.000 0.00 0.00 0.00 1.82
3199 3460 7.435305 CAAACCTCCCCGTAAATAAAAGAAAA 58.565 34.615 0.00 0.00 0.00 2.29
3200 3461 6.517027 GCAAACCTCCCCGTAAATAAAAGAAA 60.517 38.462 0.00 0.00 0.00 2.52
3201 3462 5.047872 GCAAACCTCCCCGTAAATAAAAGAA 60.048 40.000 0.00 0.00 0.00 2.52
3202 3463 4.460034 GCAAACCTCCCCGTAAATAAAAGA 59.540 41.667 0.00 0.00 0.00 2.52
3203 3464 4.461431 AGCAAACCTCCCCGTAAATAAAAG 59.539 41.667 0.00 0.00 0.00 2.27
3204 3465 4.409187 AGCAAACCTCCCCGTAAATAAAA 58.591 39.130 0.00 0.00 0.00 1.52
3205 3466 4.036941 AGCAAACCTCCCCGTAAATAAA 57.963 40.909 0.00 0.00 0.00 1.40
3206 3467 3.724732 AGCAAACCTCCCCGTAAATAA 57.275 42.857 0.00 0.00 0.00 1.40
3207 3468 5.376756 AATAGCAAACCTCCCCGTAAATA 57.623 39.130 0.00 0.00 0.00 1.40
3208 3469 3.945640 ATAGCAAACCTCCCCGTAAAT 57.054 42.857 0.00 0.00 0.00 1.40
3209 3470 3.724732 AATAGCAAACCTCCCCGTAAA 57.275 42.857 0.00 0.00 0.00 2.01
3210 3471 3.724732 AAATAGCAAACCTCCCCGTAA 57.275 42.857 0.00 0.00 0.00 3.18
3211 3472 3.613030 GAAAATAGCAAACCTCCCCGTA 58.387 45.455 0.00 0.00 0.00 4.02
3212 3473 2.443416 GAAAATAGCAAACCTCCCCGT 58.557 47.619 0.00 0.00 0.00 5.28
3213 3474 1.749063 GGAAAATAGCAAACCTCCCCG 59.251 52.381 0.00 0.00 0.00 5.73
3214 3475 2.760650 CTGGAAAATAGCAAACCTCCCC 59.239 50.000 0.00 0.00 0.00 4.81
3215 3476 2.166459 GCTGGAAAATAGCAAACCTCCC 59.834 50.000 0.00 0.00 40.81 4.30
3216 3477 3.092301 AGCTGGAAAATAGCAAACCTCC 58.908 45.455 0.00 0.00 43.53 4.30
3217 3478 4.700213 TGTAGCTGGAAAATAGCAAACCTC 59.300 41.667 0.00 0.00 43.53 3.85
3218 3479 4.662278 TGTAGCTGGAAAATAGCAAACCT 58.338 39.130 0.00 0.00 43.53 3.50
3219 3480 5.582689 ATGTAGCTGGAAAATAGCAAACC 57.417 39.130 0.00 0.00 43.53 3.27
3220 3481 8.860128 GTTTAATGTAGCTGGAAAATAGCAAAC 58.140 33.333 0.00 0.00 43.53 2.93
3221 3482 8.802267 AGTTTAATGTAGCTGGAAAATAGCAAA 58.198 29.630 0.00 0.00 43.53 3.68
3261 3522 3.875134 GACGGAAGAAGGAAAAAGTGACA 59.125 43.478 0.00 0.00 0.00 3.58
3281 3542 0.179238 GCGCGCTTGAGAAGAAAGAC 60.179 55.000 26.67 0.00 0.00 3.01
3283 3544 1.225583 CGCGCGCTTGAGAAGAAAG 60.226 57.895 30.48 4.48 0.00 2.62
3284 3545 1.617755 CTCGCGCGCTTGAGAAGAAA 61.618 55.000 30.48 1.35 34.04 2.52
3293 3554 1.875813 CTCTTCATCTCGCGCGCTT 60.876 57.895 30.48 9.25 0.00 4.68
3294 3555 2.278466 CTCTTCATCTCGCGCGCT 60.278 61.111 30.48 7.24 0.00 5.92
3299 3560 2.279784 CCGGCCTCTTCATCTCGC 60.280 66.667 0.00 0.00 0.00 5.03
3370 3632 8.316497 TGATGATTCCCCTAAGATAGATGATC 57.684 38.462 0.00 0.00 34.40 2.92
3387 3650 6.416415 AGATGGATAATGGAGCTGATGATTC 58.584 40.000 0.00 0.00 0.00 2.52
3390 3653 5.837770 AAGATGGATAATGGAGCTGATGA 57.162 39.130 0.00 0.00 0.00 2.92
3393 3656 4.533707 CCCTAAGATGGATAATGGAGCTGA 59.466 45.833 0.00 0.00 0.00 4.26
3398 3661 3.916349 CCACCCCTAAGATGGATAATGGA 59.084 47.826 0.00 0.00 35.33 3.41
3407 3670 1.447643 CTCCGCCACCCCTAAGATG 59.552 63.158 0.00 0.00 0.00 2.90
3426 3689 2.348998 CTATCCGCTGCATCCCCC 59.651 66.667 0.00 0.00 0.00 5.40
3442 3705 2.048503 CGTCGAAAACCTCCGGCT 60.049 61.111 0.00 0.00 0.00 5.52
3443 3706 3.116531 CCGTCGAAAACCTCCGGC 61.117 66.667 0.00 0.00 0.00 6.13
3444 3707 2.025418 CACCGTCGAAAACCTCCGG 61.025 63.158 6.81 6.81 44.06 5.14
3445 3708 2.025418 CCACCGTCGAAAACCTCCG 61.025 63.158 0.00 0.00 0.00 4.63
3456 3719 0.386838 CTAATCCCCGTACCACCGTC 59.613 60.000 0.00 0.00 0.00 4.79
3459 3722 1.046204 CCTCTAATCCCCGTACCACC 58.954 60.000 0.00 0.00 0.00 4.61
3463 3726 1.900486 CCATCCCTCTAATCCCCGTAC 59.100 57.143 0.00 0.00 0.00 3.67
3466 3729 1.679898 GCCATCCCTCTAATCCCCG 59.320 63.158 0.00 0.00 0.00 5.73
3492 3755 1.091771 CGCATCTCGTTTCTGGCCAT 61.092 55.000 5.51 0.00 0.00 4.40
3500 3763 0.673644 CAACCTCCCGCATCTCGTTT 60.674 55.000 0.00 0.00 36.19 3.60
3505 3768 2.370445 CCCTCAACCTCCCGCATCT 61.370 63.158 0.00 0.00 0.00 2.90
3510 3774 3.771160 CGTCCCCTCAACCTCCCG 61.771 72.222 0.00 0.00 0.00 5.14
3526 3790 3.569049 AAGTCTCGTTGCCCCGTCG 62.569 63.158 0.00 0.00 0.00 5.12
3527 3791 1.301479 AAAGTCTCGTTGCCCCGTC 60.301 57.895 0.00 0.00 0.00 4.79
3528 3792 1.597027 CAAAGTCTCGTTGCCCCGT 60.597 57.895 0.00 0.00 0.00 5.28
3536 3800 1.009389 GCTACTGCGCAAAGTCTCGT 61.009 55.000 13.05 6.48 0.00 4.18
3537 3801 1.704582 GCTACTGCGCAAAGTCTCG 59.295 57.895 13.05 0.00 0.00 4.04
3583 3847 0.919289 CCTACCCCACCCAATCCACT 60.919 60.000 0.00 0.00 0.00 4.00
3584 3848 1.212250 ACCTACCCCACCCAATCCAC 61.212 60.000 0.00 0.00 0.00 4.02
3585 3849 0.917333 GACCTACCCCACCCAATCCA 60.917 60.000 0.00 0.00 0.00 3.41
3593 3857 4.728118 ACCCCCGACCTACCCCAC 62.728 72.222 0.00 0.00 0.00 4.61
3594 3858 3.944411 AACCCCCGACCTACCCCA 61.944 66.667 0.00 0.00 0.00 4.96
3595 3859 3.405318 CAACCCCCGACCTACCCC 61.405 72.222 0.00 0.00 0.00 4.95
3596 3860 4.105553 GCAACCCCCGACCTACCC 62.106 72.222 0.00 0.00 0.00 3.69
3597 3861 3.324108 TGCAACCCCCGACCTACC 61.324 66.667 0.00 0.00 0.00 3.18
3598 3862 2.240162 CTCTGCAACCCCCGACCTAC 62.240 65.000 0.00 0.00 0.00 3.18
3599 3863 1.987855 CTCTGCAACCCCCGACCTA 60.988 63.158 0.00 0.00 0.00 3.08
3607 3871 2.087646 GTTCATCCTTCTCTGCAACCC 58.912 52.381 0.00 0.00 0.00 4.11
3618 3882 1.407437 GCCACGATCTGGTTCATCCTT 60.407 52.381 11.37 0.00 42.99 3.36
3620 3884 0.179000 AGCCACGATCTGGTTCATCC 59.821 55.000 11.37 0.00 42.99 3.51
3628 3892 4.690748 TGTTTCTCTTTAAGCCACGATCTG 59.309 41.667 0.00 0.00 0.00 2.90
3641 3905 2.222027 CTCCCAAGCGTGTTTCTCTTT 58.778 47.619 0.00 0.00 0.00 2.52
3643 3907 0.035458 CCTCCCAAGCGTGTTTCTCT 59.965 55.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.