Multiple sequence alignment - TraesCS5B01G485600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G485600 chr5B 100.000 7722 0 0 1 7722 656910974 656903253 0.000000e+00 14260.0
1 TraesCS5B01G485600 chr5B 93.974 531 25 5 1261 1787 24169092 24168565 0.000000e+00 797.0
2 TraesCS5B01G485600 chr5B 93.208 530 27 6 1261 1787 688766544 688766021 0.000000e+00 771.0
3 TraesCS5B01G485600 chr5B 87.273 440 44 6 775 1206 688766980 688766545 6.960000e-135 492.0
4 TraesCS5B01G485600 chr5B 92.857 70 3 2 372 439 319375475 319375406 4.930000e-17 100.0
5 TraesCS5B01G485600 chr5B 92.857 70 3 2 372 439 562793770 562793701 4.930000e-17 100.0
6 TraesCS5B01G485600 chr5B 90.541 74 5 2 369 440 294083362 294083435 6.380000e-16 97.1
7 TraesCS5B01G485600 chr5B 86.022 93 5 3 505 597 599699524 599699608 8.250000e-15 93.5
8 TraesCS5B01G485600 chr5A 94.614 3825 112 34 3372 7164 649434999 649431237 0.000000e+00 5836.0
9 TraesCS5B01G485600 chr5A 93.993 1132 55 6 1261 2384 649436347 649435221 0.000000e+00 1701.0
10 TraesCS5B01G485600 chr5A 95.662 853 24 5 2382 3226 299776894 299777741 0.000000e+00 1358.0
11 TraesCS5B01G485600 chr5A 95.335 836 26 5 2403 3230 47459060 47458230 0.000000e+00 1315.0
12 TraesCS5B01G485600 chr5A 93.491 845 26 13 2385 3226 83543767 83542949 0.000000e+00 1229.0
13 TraesCS5B01G485600 chr5A 90.584 616 51 5 596 1206 649436961 649436348 0.000000e+00 809.0
14 TraesCS5B01G485600 chr5A 95.833 144 5 1 3230 3372 649435225 649435082 1.680000e-56 231.0
15 TraesCS5B01G485600 chr5A 91.667 72 5 1 7634 7705 649429565 649429495 1.770000e-16 99.0
16 TraesCS5B01G485600 chr5A 95.349 43 1 1 301 342 649437073 649437031 5.000000e-07 67.6
17 TraesCS5B01G485600 chr5D 95.966 3545 92 18 3670 7172 520896800 520893265 0.000000e+00 5707.0
18 TraesCS5B01G485600 chr5D 94.059 1801 85 7 602 2384 520899281 520897485 0.000000e+00 2713.0
19 TraesCS5B01G485600 chr5D 89.041 292 12 4 3230 3520 520897489 520897217 2.060000e-90 344.0
20 TraesCS5B01G485600 chr5D 78.000 450 57 26 7277 7721 520892953 520892541 2.150000e-60 244.0
21 TraesCS5B01G485600 chr5D 95.122 123 6 0 3547 3669 520897229 520897107 2.200000e-45 195.0
22 TraesCS5B01G485600 chr5D 92.308 52 4 0 505 556 452976820 452976871 2.990000e-09 75.0
23 TraesCS5B01G485600 chr1D 97.870 845 17 1 2384 3227 79117209 79118053 0.000000e+00 1459.0
24 TraesCS5B01G485600 chr1D 94.231 52 3 0 505 556 236235457 236235508 6.420000e-11 80.5
25 TraesCS5B01G485600 chr3A 97.527 849 16 3 2385 3229 170979899 170979052 0.000000e+00 1447.0
26 TraesCS5B01G485600 chr3A 94.231 52 3 0 505 556 422758483 422758534 6.420000e-11 80.5
27 TraesCS5B01G485600 chr3D 96.560 843 18 2 2385 3227 338919714 338920545 0.000000e+00 1386.0
28 TraesCS5B01G485600 chr3D 90.625 96 9 0 37 132 430388712 430388617 2.260000e-25 128.0
29 TraesCS5B01G485600 chr3D 90.625 96 9 0 37 132 563271701 563271606 2.260000e-25 128.0
30 TraesCS5B01G485600 chr3D 89.899 99 10 0 34 132 600835311 600835409 2.260000e-25 128.0
31 TraesCS5B01G485600 chr1A 95.673 855 23 6 2380 3226 251337305 251338153 0.000000e+00 1362.0
32 TraesCS5B01G485600 chr1A 94.258 836 21 9 2403 3228 452758714 452757896 0.000000e+00 1253.0
33 TraesCS5B01G485600 chr1A 92.000 50 2 1 7217 7264 513932818 513932867 1.390000e-07 69.4
34 TraesCS5B01G485600 chr7A 95.433 854 22 8 2385 3230 491827685 491828529 0.000000e+00 1345.0
35 TraesCS5B01G485600 chr7A 95.056 809 23 7 2385 3185 600552789 600551990 0.000000e+00 1256.0
36 TraesCS5B01G485600 chr7A 93.529 850 32 7 2385 3226 24387195 24386361 0.000000e+00 1243.0
37 TraesCS5B01G485600 chr7A 88.043 92 3 3 505 596 6324446 6324363 1.370000e-17 102.0
38 TraesCS5B01G485600 chr7A 88.043 92 3 3 505 596 703569632 703569549 1.370000e-17 102.0
39 TraesCS5B01G485600 chr2A 94.852 777 31 4 1261 2033 690512920 690513691 0.000000e+00 1205.0
40 TraesCS5B01G485600 chr2A 89.862 434 38 4 775 1203 690512484 690512916 3.150000e-153 553.0
41 TraesCS5B01G485600 chr3B 93.152 774 38 7 1261 2033 41694122 41694881 0.000000e+00 1122.0
42 TraesCS5B01G485600 chr3B 93.260 727 45 2 1261 1984 185790593 185791318 0.000000e+00 1068.0
43 TraesCS5B01G485600 chr3B 89.862 434 38 4 775 1203 41693686 41694118 3.150000e-153 553.0
44 TraesCS5B01G485600 chr3B 88.479 434 44 4 775 1203 185790157 185790589 3.190000e-143 520.0
45 TraesCS5B01G485600 chr2B 95.038 524 22 2 1261 1781 771209857 771210379 0.000000e+00 821.0
46 TraesCS5B01G485600 chr2B 94.151 530 27 2 1261 1787 40932985 40932457 0.000000e+00 804.0
47 TraesCS5B01G485600 chr2B 87.783 442 40 8 770 1203 771209418 771209853 8.940000e-139 505.0
48 TraesCS5B01G485600 chr2B 87.727 440 42 7 775 1206 40933421 40932986 3.220000e-138 503.0
49 TraesCS5B01G485600 chr2B 91.667 96 8 0 37 132 777120613 777120518 4.860000e-27 134.0
50 TraesCS5B01G485600 chr2B 94.286 70 2 2 372 439 415989442 415989511 1.060000e-18 106.0
51 TraesCS5B01G485600 chr2B 92.000 75 3 3 372 444 454680706 454680779 1.370000e-17 102.0
52 TraesCS5B01G485600 chr2B 93.056 72 1 2 1963 2033 771210385 771210453 1.370000e-17 102.0
53 TraesCS5B01G485600 chr2B 87.234 94 3 3 505 598 435690055 435689971 1.770000e-16 99.0
54 TraesCS5B01G485600 chr4A 94.847 524 23 2 1261 1781 707726609 707727131 0.000000e+00 815.0
55 TraesCS5B01G485600 chr4A 87.643 437 42 6 775 1203 707726173 707726605 1.500000e-136 497.0
56 TraesCS5B01G485600 chr4A 93.056 72 1 2 1963 2033 707727137 707727205 1.370000e-17 102.0
57 TraesCS5B01G485600 chr7B 94.340 530 26 2 1261 1787 26933529 26933001 0.000000e+00 809.0
58 TraesCS5B01G485600 chr7B 88.172 93 6 5 372 460 517095139 517095048 1.060000e-18 106.0
59 TraesCS5B01G485600 chr7B 93.056 72 1 2 1963 2033 26933001 26932933 1.370000e-17 102.0
60 TraesCS5B01G485600 chr4B 94.275 524 26 2 1261 1781 633813074 633813596 0.000000e+00 798.0
61 TraesCS5B01G485600 chr4B 90.625 96 9 0 37 132 646186291 646186196 2.260000e-25 128.0
62 TraesCS5B01G485600 chr4B 93.056 72 1 2 1963 2033 633813602 633813670 1.370000e-17 102.0
63 TraesCS5B01G485600 chr1B 93.774 530 29 2 1261 1787 34159347 34158819 0.000000e+00 793.0
64 TraesCS5B01G485600 chr1B 94.444 414 16 1 2823 3229 97370685 97371098 1.410000e-176 630.0
65 TraesCS5B01G485600 chr1B 93.056 72 1 2 1963 2033 34158819 34158751 1.370000e-17 102.0
66 TraesCS5B01G485600 chr1B 87.234 94 4 1 505 598 45048567 45048482 4.930000e-17 100.0
67 TraesCS5B01G485600 chr6D 91.837 98 8 0 34 131 469582574 469582671 3.760000e-28 137.0
68 TraesCS5B01G485600 chr6D 90.099 101 9 1 131 230 1617054 1617154 6.290000e-26 130.0
69 TraesCS5B01G485600 chr6D 94.231 52 3 0 505 556 131469991 131470042 6.420000e-11 80.5
70 TraesCS5B01G485600 chr7D 91.667 96 8 0 37 132 91749028 91748933 4.860000e-27 134.0
71 TraesCS5B01G485600 chr7D 91.667 96 8 0 37 132 91779362 91779267 4.860000e-27 134.0
72 TraesCS5B01G485600 chr7D 89.583 96 10 0 37 132 66349110 66349015 1.050000e-23 122.0
73 TraesCS5B01G485600 chr7D 97.674 43 1 0 7197 7239 603652052 603652010 2.990000e-09 75.0
74 TraesCS5B01G485600 chrUn 87.234 94 4 1 505 598 3557326 3557411 4.930000e-17 100.0
75 TraesCS5B01G485600 chrUn 87.234 94 4 1 505 598 340215287 340215372 4.930000e-17 100.0
76 TraesCS5B01G485600 chr6B 92.857 70 3 2 372 439 713974472 713974541 4.930000e-17 100.0
77 TraesCS5B01G485600 chr2D 92.857 70 3 2 372 439 418057568 418057637 4.930000e-17 100.0
78 TraesCS5B01G485600 chr2D 88.095 84 5 5 372 450 520503883 520503800 2.290000e-15 95.3
79 TraesCS5B01G485600 chr2D 88.158 76 7 1 7206 7279 77218867 77218942 1.070000e-13 89.8
80 TraesCS5B01G485600 chr4D 94.231 52 3 0 505 556 107801241 107801190 6.420000e-11 80.5
81 TraesCS5B01G485600 chr4D 94.231 52 3 0 505 556 132639748 132639799 6.420000e-11 80.5
82 TraesCS5B01G485600 chr4D 88.333 60 4 2 343 399 428968621 428968680 1.390000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G485600 chr5B 656903253 656910974 7721 True 14260.000000 14260 100.000000 1 7722 1 chr5B.!!$R4 7721
1 TraesCS5B01G485600 chr5B 24168565 24169092 527 True 797.000000 797 93.974000 1261 1787 1 chr5B.!!$R1 526
2 TraesCS5B01G485600 chr5B 688766021 688766980 959 True 631.500000 771 90.240500 775 1787 2 chr5B.!!$R5 1012
3 TraesCS5B01G485600 chr5A 649429495 649437073 7578 True 1457.266667 5836 93.673333 301 7705 6 chr5A.!!$R3 7404
4 TraesCS5B01G485600 chr5A 299776894 299777741 847 False 1358.000000 1358 95.662000 2382 3226 1 chr5A.!!$F1 844
5 TraesCS5B01G485600 chr5A 47458230 47459060 830 True 1315.000000 1315 95.335000 2403 3230 1 chr5A.!!$R1 827
6 TraesCS5B01G485600 chr5A 83542949 83543767 818 True 1229.000000 1229 93.491000 2385 3226 1 chr5A.!!$R2 841
7 TraesCS5B01G485600 chr5D 520892541 520899281 6740 True 1840.600000 5707 90.437600 602 7721 5 chr5D.!!$R1 7119
8 TraesCS5B01G485600 chr1D 79117209 79118053 844 False 1459.000000 1459 97.870000 2384 3227 1 chr1D.!!$F1 843
9 TraesCS5B01G485600 chr3A 170979052 170979899 847 True 1447.000000 1447 97.527000 2385 3229 1 chr3A.!!$R1 844
10 TraesCS5B01G485600 chr3D 338919714 338920545 831 False 1386.000000 1386 96.560000 2385 3227 1 chr3D.!!$F1 842
11 TraesCS5B01G485600 chr1A 251337305 251338153 848 False 1362.000000 1362 95.673000 2380 3226 1 chr1A.!!$F1 846
12 TraesCS5B01G485600 chr1A 452757896 452758714 818 True 1253.000000 1253 94.258000 2403 3228 1 chr1A.!!$R1 825
13 TraesCS5B01G485600 chr7A 491827685 491828529 844 False 1345.000000 1345 95.433000 2385 3230 1 chr7A.!!$F1 845
14 TraesCS5B01G485600 chr7A 600551990 600552789 799 True 1256.000000 1256 95.056000 2385 3185 1 chr7A.!!$R3 800
15 TraesCS5B01G485600 chr7A 24386361 24387195 834 True 1243.000000 1243 93.529000 2385 3226 1 chr7A.!!$R2 841
16 TraesCS5B01G485600 chr2A 690512484 690513691 1207 False 879.000000 1205 92.357000 775 2033 2 chr2A.!!$F1 1258
17 TraesCS5B01G485600 chr3B 41693686 41694881 1195 False 837.500000 1122 91.507000 775 2033 2 chr3B.!!$F1 1258
18 TraesCS5B01G485600 chr3B 185790157 185791318 1161 False 794.000000 1068 90.869500 775 1984 2 chr3B.!!$F2 1209
19 TraesCS5B01G485600 chr2B 40932457 40933421 964 True 653.500000 804 90.939000 775 1787 2 chr2B.!!$R3 1012
20 TraesCS5B01G485600 chr2B 771209418 771210453 1035 False 476.000000 821 91.959000 770 2033 3 chr2B.!!$F3 1263
21 TraesCS5B01G485600 chr4A 707726173 707727205 1032 False 471.333333 815 91.848667 775 2033 3 chr4A.!!$F1 1258
22 TraesCS5B01G485600 chr7B 26932933 26933529 596 True 455.500000 809 93.698000 1261 2033 2 chr7B.!!$R2 772
23 TraesCS5B01G485600 chr4B 633813074 633813670 596 False 450.000000 798 93.665500 1261 2033 2 chr4B.!!$F1 772
24 TraesCS5B01G485600 chr1B 34158751 34159347 596 True 447.500000 793 93.415000 1261 2033 2 chr1B.!!$R2 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 264 0.106708 AAGAAGCTGCTGTTGGACGA 59.893 50.000 1.35 0.00 0.00 4.20 F
591 597 0.106967 GCCAAAGTCAGGGGATCCTC 60.107 60.000 12.58 7.90 42.67 3.71 F
592 598 0.179000 CCAAAGTCAGGGGATCCTCG 59.821 60.000 12.58 4.32 42.67 4.63 F
619 625 0.249280 CGAAGCCCACCCAAACAAAC 60.249 55.000 0.00 0.00 0.00 2.93 F
867 873 0.533755 CTCCAGATCCACCAATCGCC 60.534 60.000 0.00 0.00 0.00 5.54 F
1617 1668 0.622136 TCCCATGAGCTTGTGCAGAT 59.378 50.000 0.00 0.00 42.74 2.90 F
2883 2948 0.820074 AGGGACGAGCGGATCTAGTG 60.820 60.000 0.00 0.00 30.48 2.74 F
3002 3067 1.209019 GAGAGCAGAAGCAATGGAGGA 59.791 52.381 0.00 0.00 45.49 3.71 F
3401 3587 2.384382 CAGTGTTTGTCCAATTCACGC 58.616 47.619 8.88 0.32 33.79 5.34 F
3808 4300 2.637382 TCTTGGAGGTGATAGTGTGCAA 59.363 45.455 0.00 0.00 0.00 4.08 F
5587 6079 1.221414 CGGAGATCGAAGAATTGGCC 58.779 55.000 0.00 0.00 43.58 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1508 0.457853 GAGATGCGCGTCAACACCTA 60.458 55.000 30.02 0.00 0.00 3.08 R
1472 1519 0.460987 ACTAACAGGCTGAGATGCGC 60.461 55.000 23.66 0.00 0.00 6.09 R
1617 1668 2.312390 GCACCAACTTAGTTTTCCCCA 58.688 47.619 0.00 0.00 0.00 4.96 R
1804 1857 2.557924 CCAGCACCAGCACAAGAATTTA 59.442 45.455 0.00 0.00 45.49 1.40 R
2094 2148 2.749621 AGGATCACAAATTCGAACAGGC 59.250 45.455 0.00 0.00 0.00 4.85 R
3059 3147 1.300620 TGCACCTTGAGTCGTTCGG 60.301 57.895 0.00 0.00 0.00 4.30 R
3808 4300 1.187087 CCCTACGAGAAAGCTGACCT 58.813 55.000 0.00 0.00 0.00 3.85 R
4879 5371 1.952367 GCCTCTGCAACATTACCAGCT 60.952 52.381 0.00 0.00 37.47 4.24 R
5398 5890 0.652592 CAGGTGAACGATTCGATGGC 59.347 55.000 13.95 0.41 0.00 4.40 R
5762 6254 2.104170 GCTCCCAGAACTAGCTACAGT 58.896 52.381 0.00 0.00 33.40 3.55 R
7436 8529 0.039527 GCACATGAACAAACCCGACC 60.040 55.000 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.322906 CTGTAATTTTGTTCATACTCAGACCA 57.677 34.615 0.00 0.00 0.00 4.02
26 27 8.862325 TGTAATTTTGTTCATACTCAGACCAT 57.138 30.769 0.00 0.00 0.00 3.55
27 28 9.295825 TGTAATTTTGTTCATACTCAGACCATT 57.704 29.630 0.00 0.00 0.00 3.16
56 57 8.927675 TTTACCAATTACAGGTACTTTGATGT 57.072 30.769 5.17 0.70 41.13 3.06
57 58 6.817765 ACCAATTACAGGTACTTTGATGTG 57.182 37.500 5.17 0.00 37.67 3.21
58 59 5.710099 ACCAATTACAGGTACTTTGATGTGG 59.290 40.000 5.17 3.32 37.67 4.17
59 60 5.943416 CCAATTACAGGTACTTTGATGTGGA 59.057 40.000 5.17 0.00 34.60 4.02
60 61 6.128007 CCAATTACAGGTACTTTGATGTGGAC 60.128 42.308 5.17 0.00 34.60 4.02
61 62 3.418684 ACAGGTACTTTGATGTGGACC 57.581 47.619 5.17 0.00 34.60 4.46
62 63 2.979678 ACAGGTACTTTGATGTGGACCT 59.020 45.455 5.17 0.00 34.60 3.85
63 64 4.164981 ACAGGTACTTTGATGTGGACCTA 58.835 43.478 0.00 0.00 34.60 3.08
64 65 4.595781 ACAGGTACTTTGATGTGGACCTAA 59.404 41.667 0.00 0.00 34.60 2.69
65 66 5.072600 ACAGGTACTTTGATGTGGACCTAAA 59.927 40.000 0.00 0.00 34.60 1.85
66 67 6.001460 CAGGTACTTTGATGTGGACCTAAAA 58.999 40.000 0.00 0.00 34.60 1.52
67 68 6.659242 CAGGTACTTTGATGTGGACCTAAAAT 59.341 38.462 0.00 0.00 34.60 1.82
68 69 6.884836 AGGTACTTTGATGTGGACCTAAAATC 59.115 38.462 0.00 0.00 35.53 2.17
69 70 6.095021 GGTACTTTGATGTGGACCTAAAATCC 59.905 42.308 0.00 0.00 36.70 3.01
70 71 5.640147 ACTTTGATGTGGACCTAAAATCCA 58.360 37.500 0.00 0.00 44.20 3.41
81 82 8.713708 TGGACCTAAAATCCAAGAAAATACAA 57.286 30.769 0.00 0.00 43.43 2.41
82 83 9.148879 TGGACCTAAAATCCAAGAAAATACAAA 57.851 29.630 0.00 0.00 43.43 2.83
83 84 9.639601 GGACCTAAAATCCAAGAAAATACAAAG 57.360 33.333 0.00 0.00 36.15 2.77
133 134 9.898152 AATAAAATCTTTTGAAAACACCTTCCA 57.102 25.926 0.00 0.00 0.00 3.53
135 136 8.437360 AAAATCTTTTGAAAACACCTTCCATC 57.563 30.769 0.00 0.00 0.00 3.51
136 137 6.983906 ATCTTTTGAAAACACCTTCCATCT 57.016 33.333 0.00 0.00 0.00 2.90
137 138 6.391227 TCTTTTGAAAACACCTTCCATCTC 57.609 37.500 0.00 0.00 0.00 2.75
138 139 6.129179 TCTTTTGAAAACACCTTCCATCTCT 58.871 36.000 0.00 0.00 0.00 3.10
139 140 6.607198 TCTTTTGAAAACACCTTCCATCTCTT 59.393 34.615 0.00 0.00 0.00 2.85
140 141 6.790232 TTTGAAAACACCTTCCATCTCTTT 57.210 33.333 0.00 0.00 0.00 2.52
141 142 5.772825 TGAAAACACCTTCCATCTCTTTG 57.227 39.130 0.00 0.00 0.00 2.77
142 143 4.584325 TGAAAACACCTTCCATCTCTTTGG 59.416 41.667 0.00 0.00 38.18 3.28
143 144 4.453480 AAACACCTTCCATCTCTTTGGA 57.547 40.909 0.00 0.00 44.08 3.53
144 145 4.664688 AACACCTTCCATCTCTTTGGAT 57.335 40.909 0.00 0.00 45.08 3.41
145 146 4.664688 ACACCTTCCATCTCTTTGGATT 57.335 40.909 0.00 0.00 45.08 3.01
146 147 4.338879 ACACCTTCCATCTCTTTGGATTG 58.661 43.478 0.00 0.00 45.08 2.67
147 148 4.043310 ACACCTTCCATCTCTTTGGATTGA 59.957 41.667 0.00 0.00 45.08 2.57
148 149 5.198965 CACCTTCCATCTCTTTGGATTGAT 58.801 41.667 0.00 0.00 45.08 2.57
149 150 6.069440 ACACCTTCCATCTCTTTGGATTGATA 60.069 38.462 0.00 0.00 45.08 2.15
150 151 6.261826 CACCTTCCATCTCTTTGGATTGATAC 59.738 42.308 0.00 0.00 45.08 2.24
151 152 5.767168 CCTTCCATCTCTTTGGATTGATACC 59.233 44.000 0.00 0.00 45.08 2.73
152 153 5.310409 TCCATCTCTTTGGATTGATACCC 57.690 43.478 0.00 0.00 40.90 3.69
153 154 4.104738 TCCATCTCTTTGGATTGATACCCC 59.895 45.833 0.00 0.00 40.90 4.95
154 155 3.838244 TCTCTTTGGATTGATACCCCG 57.162 47.619 0.00 0.00 0.00 5.73
155 156 2.158813 TCTCTTTGGATTGATACCCCGC 60.159 50.000 0.00 0.00 0.00 6.13
156 157 1.133915 TCTTTGGATTGATACCCCGCC 60.134 52.381 0.00 0.00 0.00 6.13
157 158 0.923358 TTTGGATTGATACCCCGCCT 59.077 50.000 0.00 0.00 0.00 5.52
158 159 0.182537 TTGGATTGATACCCCGCCTG 59.817 55.000 0.00 0.00 0.00 4.85
159 160 0.692756 TGGATTGATACCCCGCCTGA 60.693 55.000 0.00 0.00 0.00 3.86
160 161 0.693049 GGATTGATACCCCGCCTGAT 59.307 55.000 0.00 0.00 0.00 2.90
161 162 1.073923 GGATTGATACCCCGCCTGATT 59.926 52.381 0.00 0.00 0.00 2.57
162 163 2.489073 GGATTGATACCCCGCCTGATTT 60.489 50.000 0.00 0.00 0.00 2.17
163 164 2.341846 TTGATACCCCGCCTGATTTC 57.658 50.000 0.00 0.00 0.00 2.17
164 165 1.208706 TGATACCCCGCCTGATTTCA 58.791 50.000 0.00 0.00 0.00 2.69
165 166 1.562008 TGATACCCCGCCTGATTTCAA 59.438 47.619 0.00 0.00 0.00 2.69
166 167 2.174639 TGATACCCCGCCTGATTTCAAT 59.825 45.455 0.00 0.00 0.00 2.57
167 168 3.392947 TGATACCCCGCCTGATTTCAATA 59.607 43.478 0.00 0.00 0.00 1.90
168 169 4.042809 TGATACCCCGCCTGATTTCAATAT 59.957 41.667 0.00 0.00 0.00 1.28
169 170 5.249622 TGATACCCCGCCTGATTTCAATATA 59.750 40.000 0.00 0.00 0.00 0.86
170 171 4.447138 ACCCCGCCTGATTTCAATATAA 57.553 40.909 0.00 0.00 0.00 0.98
171 172 4.798882 ACCCCGCCTGATTTCAATATAAA 58.201 39.130 0.00 0.00 0.00 1.40
172 173 5.205056 ACCCCGCCTGATTTCAATATAAAA 58.795 37.500 0.00 0.00 0.00 1.52
173 174 5.838521 ACCCCGCCTGATTTCAATATAAAAT 59.161 36.000 0.00 0.00 0.00 1.82
174 175 6.326323 ACCCCGCCTGATTTCAATATAAAATT 59.674 34.615 0.00 0.00 0.00 1.82
175 176 6.646240 CCCCGCCTGATTTCAATATAAAATTG 59.354 38.462 0.00 0.00 0.00 2.32
176 177 6.146021 CCCGCCTGATTTCAATATAAAATTGC 59.854 38.462 0.00 0.00 0.00 3.56
177 178 6.925165 CCGCCTGATTTCAATATAAAATTGCT 59.075 34.615 0.00 0.00 0.00 3.91
178 179 8.081633 CCGCCTGATTTCAATATAAAATTGCTA 58.918 33.333 0.00 0.00 0.00 3.49
179 180 9.121517 CGCCTGATTTCAATATAAAATTGCTAG 57.878 33.333 0.00 0.00 0.00 3.42
180 181 8.919661 GCCTGATTTCAATATAAAATTGCTAGC 58.080 33.333 8.10 8.10 0.00 3.42
181 182 9.970395 CCTGATTTCAATATAAAATTGCTAGCA 57.030 29.630 14.93 14.93 0.00 3.49
196 197 9.868277 AAATTGCTAGCAGACTATGTATCTATC 57.132 33.333 18.45 0.00 0.00 2.08
197 198 8.586879 ATTGCTAGCAGACTATGTATCTATCA 57.413 34.615 18.45 0.00 0.00 2.15
198 199 8.586879 TTGCTAGCAGACTATGTATCTATCAT 57.413 34.615 18.45 0.00 0.00 2.45
199 200 8.586879 TGCTAGCAGACTATGTATCTATCATT 57.413 34.615 14.93 0.00 0.00 2.57
200 201 9.029368 TGCTAGCAGACTATGTATCTATCATTT 57.971 33.333 14.93 0.00 0.00 2.32
201 202 9.299963 GCTAGCAGACTATGTATCTATCATTTG 57.700 37.037 10.63 0.00 0.00 2.32
256 257 2.417719 CTTCGGTAAAGAAGCTGCTGT 58.582 47.619 1.35 0.00 40.76 4.40
257 258 2.543777 TCGGTAAAGAAGCTGCTGTT 57.456 45.000 1.35 0.59 0.00 3.16
258 259 2.143122 TCGGTAAAGAAGCTGCTGTTG 58.857 47.619 1.35 0.00 0.00 3.33
259 260 1.197721 CGGTAAAGAAGCTGCTGTTGG 59.802 52.381 1.35 0.00 0.00 3.77
260 261 2.504367 GGTAAAGAAGCTGCTGTTGGA 58.496 47.619 1.35 0.00 0.00 3.53
261 262 2.226674 GGTAAAGAAGCTGCTGTTGGAC 59.773 50.000 1.35 0.00 0.00 4.02
262 263 0.947244 AAAGAAGCTGCTGTTGGACG 59.053 50.000 1.35 0.00 0.00 4.79
263 264 0.106708 AAGAAGCTGCTGTTGGACGA 59.893 50.000 1.35 0.00 0.00 4.20
264 265 0.601311 AGAAGCTGCTGTTGGACGAC 60.601 55.000 1.35 0.00 0.00 4.34
265 266 0.601311 GAAGCTGCTGTTGGACGACT 60.601 55.000 1.35 0.00 0.00 4.18
266 267 0.179045 AAGCTGCTGTTGGACGACTT 60.179 50.000 1.35 0.00 0.00 3.01
267 268 0.882042 AGCTGCTGTTGGACGACTTG 60.882 55.000 0.00 0.00 0.00 3.16
268 269 0.880278 GCTGCTGTTGGACGACTTGA 60.880 55.000 0.00 0.00 0.00 3.02
269 270 1.143305 CTGCTGTTGGACGACTTGAG 58.857 55.000 0.00 0.00 0.00 3.02
270 271 0.880278 TGCTGTTGGACGACTTGAGC 60.880 55.000 0.00 0.00 0.00 4.26
271 272 0.880278 GCTGTTGGACGACTTGAGCA 60.880 55.000 0.00 0.00 0.00 4.26
272 273 1.581934 CTGTTGGACGACTTGAGCAA 58.418 50.000 0.00 0.00 0.00 3.91
273 274 1.261619 CTGTTGGACGACTTGAGCAAC 59.738 52.381 0.00 0.00 0.00 4.17
274 275 1.295792 GTTGGACGACTTGAGCAACA 58.704 50.000 0.00 0.00 0.00 3.33
275 276 1.668751 GTTGGACGACTTGAGCAACAA 59.331 47.619 0.00 0.00 36.97 2.83
276 277 2.254546 TGGACGACTTGAGCAACAAT 57.745 45.000 0.00 0.00 37.88 2.71
277 278 1.872952 TGGACGACTTGAGCAACAATG 59.127 47.619 0.00 0.00 37.88 2.82
278 279 1.873591 GGACGACTTGAGCAACAATGT 59.126 47.619 0.00 0.00 37.88 2.71
279 280 2.290641 GGACGACTTGAGCAACAATGTT 59.709 45.455 0.00 0.00 37.88 2.71
280 281 3.291585 GACGACTTGAGCAACAATGTTG 58.708 45.455 20.77 20.77 37.88 3.33
281 282 2.942376 ACGACTTGAGCAACAATGTTGA 59.058 40.909 28.10 6.10 37.88 3.18
282 283 3.242739 ACGACTTGAGCAACAATGTTGAC 60.243 43.478 28.10 19.86 37.88 3.18
283 284 3.242706 CGACTTGAGCAACAATGTTGACA 60.243 43.478 28.10 21.89 37.88 3.58
284 285 4.285292 GACTTGAGCAACAATGTTGACAG 58.715 43.478 28.10 17.95 37.88 3.51
285 286 2.780065 TGAGCAACAATGTTGACAGC 57.220 45.000 28.10 13.53 0.00 4.40
286 287 2.022934 TGAGCAACAATGTTGACAGCA 58.977 42.857 28.10 15.97 0.00 4.41
287 288 2.033675 TGAGCAACAATGTTGACAGCAG 59.966 45.455 28.10 1.70 0.00 4.24
288 289 1.338973 AGCAACAATGTTGACAGCAGG 59.661 47.619 28.10 0.96 0.00 4.85
289 290 1.603678 GCAACAATGTTGACAGCAGGG 60.604 52.381 28.10 0.23 0.00 4.45
290 291 1.000060 CAACAATGTTGACAGCAGGGG 60.000 52.381 20.50 0.00 0.00 4.79
291 292 0.478072 ACAATGTTGACAGCAGGGGA 59.522 50.000 0.00 0.00 0.00 4.81
292 293 1.076024 ACAATGTTGACAGCAGGGGAT 59.924 47.619 0.00 0.00 0.00 3.85
293 294 2.173519 CAATGTTGACAGCAGGGGATT 58.826 47.619 0.00 0.00 0.00 3.01
294 295 1.843368 ATGTTGACAGCAGGGGATTG 58.157 50.000 0.00 0.00 0.00 2.67
295 296 0.895100 TGTTGACAGCAGGGGATTGC 60.895 55.000 0.00 0.00 44.41 3.56
342 344 1.078848 GAGGCACTTCGCTGGTGAT 60.079 57.895 6.46 0.00 41.55 3.06
343 345 0.674895 GAGGCACTTCGCTGGTGATT 60.675 55.000 6.46 0.00 41.55 2.57
345 347 1.421485 GCACTTCGCTGGTGATTCG 59.579 57.895 6.46 0.00 36.89 3.34
346 348 1.014044 GCACTTCGCTGGTGATTCGA 61.014 55.000 6.46 0.00 36.89 3.71
347 349 1.428448 CACTTCGCTGGTGATTCGAA 58.572 50.000 0.00 0.00 39.51 3.71
348 350 1.798223 CACTTCGCTGGTGATTCGAAA 59.202 47.619 0.00 0.00 40.94 3.46
349 351 2.416547 CACTTCGCTGGTGATTCGAAAT 59.583 45.455 0.00 0.00 40.94 2.17
350 352 3.074412 ACTTCGCTGGTGATTCGAAATT 58.926 40.909 0.00 0.00 40.94 1.82
352 354 4.092968 ACTTCGCTGGTGATTCGAAATTAC 59.907 41.667 0.00 1.46 40.94 1.89
354 356 3.863424 TCGCTGGTGATTCGAAATTACTC 59.137 43.478 0.00 0.00 0.00 2.59
355 357 3.301835 CGCTGGTGATTCGAAATTACTCG 60.302 47.826 0.00 4.19 40.25 4.18
359 361 5.231702 TGGTGATTCGAAATTACTCGTTCA 58.768 37.500 0.00 0.00 39.84 3.18
360 362 5.697178 TGGTGATTCGAAATTACTCGTTCAA 59.303 36.000 0.00 0.00 39.84 2.69
361 363 6.203145 TGGTGATTCGAAATTACTCGTTCAAA 59.797 34.615 0.00 0.00 39.84 2.69
362 364 7.073265 GGTGATTCGAAATTACTCGTTCAAAA 58.927 34.615 0.00 0.00 39.84 2.44
363 365 7.588488 GGTGATTCGAAATTACTCGTTCAAAAA 59.412 33.333 0.00 0.00 39.84 1.94
440 442 2.816411 TCCGAATGGAGGAGTACTTGT 58.184 47.619 0.00 0.00 40.17 3.16
441 443 3.972133 TCCGAATGGAGGAGTACTTGTA 58.028 45.455 0.00 0.00 40.17 2.41
442 444 4.543689 TCCGAATGGAGGAGTACTTGTAT 58.456 43.478 0.00 0.00 40.17 2.29
443 445 5.698104 TCCGAATGGAGGAGTACTTGTATA 58.302 41.667 0.00 0.00 40.17 1.47
444 446 6.312529 TCCGAATGGAGGAGTACTTGTATAT 58.687 40.000 0.00 0.00 40.17 0.86
453 455 7.715686 GGAGGAGTACTTGTATATTTTTCCAGG 59.284 40.741 0.00 0.00 0.00 4.45
492 498 7.432869 TCATGTTTTCCATCAAAAAGGTACTG 58.567 34.615 0.00 0.00 40.86 2.74
493 499 6.783708 TGTTTTCCATCAAAAAGGTACTGT 57.216 33.333 0.00 0.00 40.86 3.55
494 500 7.883391 TGTTTTCCATCAAAAAGGTACTGTA 57.117 32.000 0.00 0.00 40.86 2.74
495 501 7.708998 TGTTTTCCATCAAAAAGGTACTGTAC 58.291 34.615 9.46 9.46 40.86 2.90
496 502 7.558444 TGTTTTCCATCAAAAAGGTACTGTACT 59.442 33.333 16.79 1.60 40.86 2.73
497 503 9.059260 GTTTTCCATCAAAAAGGTACTGTACTA 57.941 33.333 16.79 0.00 40.86 1.82
498 504 8.842358 TTTCCATCAAAAAGGTACTGTACTAG 57.158 34.615 16.79 0.00 40.86 2.57
499 505 6.942976 TCCATCAAAAAGGTACTGTACTAGG 58.057 40.000 16.79 6.79 40.86 3.02
500 506 5.585047 CCATCAAAAAGGTACTGTACTAGGC 59.415 44.000 16.79 1.35 40.86 3.93
501 507 4.813027 TCAAAAAGGTACTGTACTAGGCG 58.187 43.478 16.79 3.42 40.86 5.52
502 508 4.523943 TCAAAAAGGTACTGTACTAGGCGA 59.476 41.667 16.79 5.46 40.86 5.54
503 509 5.010922 TCAAAAAGGTACTGTACTAGGCGAA 59.989 40.000 16.79 0.00 40.86 4.70
504 510 4.715527 AAAGGTACTGTACTAGGCGAAG 57.284 45.455 16.79 0.00 40.86 3.79
517 523 3.257933 CGAAGCTGACAAGTGGGC 58.742 61.111 0.00 0.00 0.00 5.36
518 524 1.302033 CGAAGCTGACAAGTGGGCT 60.302 57.895 0.00 0.00 36.53 5.19
519 525 0.886490 CGAAGCTGACAAGTGGGCTT 60.886 55.000 8.35 8.35 45.91 4.35
520 526 3.027419 AAGCTGACAAGTGGGCTTC 57.973 52.632 0.00 0.00 40.40 3.86
521 527 0.183492 AAGCTGACAAGTGGGCTTCA 59.817 50.000 0.00 0.00 40.40 3.02
522 528 0.536006 AGCTGACAAGTGGGCTTCAC 60.536 55.000 0.00 3.17 46.39 3.18
529 535 2.594592 GTGGGCTTCACGCTTGGT 60.595 61.111 0.00 0.00 39.13 3.67
531 537 3.365265 GGGCTTCACGCTTGGTGG 61.365 66.667 0.00 0.00 46.96 4.61
532 538 3.365265 GGCTTCACGCTTGGTGGG 61.365 66.667 0.00 0.00 46.96 4.61
533 539 2.281484 GCTTCACGCTTGGTGGGA 60.281 61.111 0.00 0.00 46.96 4.37
534 540 2.617274 GCTTCACGCTTGGTGGGAC 61.617 63.158 0.00 0.00 46.96 4.46
535 541 1.966451 CTTCACGCTTGGTGGGACC 60.966 63.158 0.00 0.00 46.96 4.46
536 542 3.485346 TTCACGCTTGGTGGGACCC 62.485 63.158 2.45 2.45 46.96 4.46
537 543 4.263572 CACGCTTGGTGGGACCCA 62.264 66.667 9.95 9.95 43.16 4.51
538 544 3.256960 ACGCTTGGTGGGACCCAT 61.257 61.111 18.51 0.00 37.50 4.00
539 545 2.751436 CGCTTGGTGGGACCCATG 60.751 66.667 18.51 8.82 37.50 3.66
540 546 2.440599 GCTTGGTGGGACCCATGT 59.559 61.111 18.51 0.00 37.50 3.21
541 547 1.978617 GCTTGGTGGGACCCATGTG 60.979 63.158 18.51 8.82 37.50 3.21
542 548 1.460255 CTTGGTGGGACCCATGTGT 59.540 57.895 18.51 0.00 37.50 3.72
543 549 0.609131 CTTGGTGGGACCCATGTGTC 60.609 60.000 18.51 2.54 37.50 3.67
544 550 1.356494 TTGGTGGGACCCATGTGTCA 61.356 55.000 18.51 7.84 37.50 3.58
545 551 1.002134 GGTGGGACCCATGTGTCAG 60.002 63.158 18.51 0.00 35.28 3.51
546 552 1.761174 GTGGGACCCATGTGTCAGT 59.239 57.895 18.51 0.00 35.28 3.41
547 553 0.606401 GTGGGACCCATGTGTCAGTG 60.606 60.000 18.51 0.00 35.28 3.66
548 554 1.059584 TGGGACCCATGTGTCAGTGT 61.060 55.000 9.95 0.00 36.97 3.55
549 555 0.321653 GGGACCCATGTGTCAGTGTC 60.322 60.000 10.59 0.00 36.97 3.67
550 556 0.687354 GGACCCATGTGTCAGTGTCT 59.313 55.000 10.59 0.00 36.97 3.41
551 557 1.338200 GGACCCATGTGTCAGTGTCTC 60.338 57.143 10.59 0.00 36.97 3.36
552 558 1.344438 GACCCATGTGTCAGTGTCTCA 59.656 52.381 3.18 0.00 35.29 3.27
553 559 1.768275 ACCCATGTGTCAGTGTCTCAA 59.232 47.619 0.00 0.00 0.00 3.02
554 560 2.373169 ACCCATGTGTCAGTGTCTCAAT 59.627 45.455 0.00 0.00 0.00 2.57
555 561 2.745821 CCCATGTGTCAGTGTCTCAATG 59.254 50.000 0.00 0.00 0.00 2.82
556 562 3.405831 CCATGTGTCAGTGTCTCAATGT 58.594 45.455 0.00 0.00 31.07 2.71
557 563 3.434641 CCATGTGTCAGTGTCTCAATGTC 59.565 47.826 0.00 0.00 31.07 3.06
558 564 4.313282 CATGTGTCAGTGTCTCAATGTCT 58.687 43.478 0.00 0.00 31.07 3.41
559 565 3.982475 TGTGTCAGTGTCTCAATGTCTC 58.018 45.455 0.00 0.00 31.07 3.36
560 566 3.384467 TGTGTCAGTGTCTCAATGTCTCA 59.616 43.478 0.00 0.00 31.07 3.27
561 567 4.141959 TGTGTCAGTGTCTCAATGTCTCAA 60.142 41.667 0.00 0.00 31.07 3.02
562 568 4.993584 GTGTCAGTGTCTCAATGTCTCAAT 59.006 41.667 0.00 0.00 31.07 2.57
563 569 4.992951 TGTCAGTGTCTCAATGTCTCAATG 59.007 41.667 0.00 0.00 31.07 2.82
564 570 4.391216 GTCAGTGTCTCAATGTCTCAATGG 59.609 45.833 0.00 0.00 31.07 3.16
565 571 3.126514 CAGTGTCTCAATGTCTCAATGGC 59.873 47.826 0.00 0.00 0.00 4.40
566 572 3.076621 GTGTCTCAATGTCTCAATGGCA 58.923 45.455 0.00 0.00 33.36 4.92
567 573 3.126514 GTGTCTCAATGTCTCAATGGCAG 59.873 47.826 0.00 0.00 31.78 4.85
568 574 3.008266 TGTCTCAATGTCTCAATGGCAGA 59.992 43.478 0.00 0.00 31.78 4.26
569 575 4.197750 GTCTCAATGTCTCAATGGCAGAT 58.802 43.478 0.00 0.00 31.78 2.90
570 576 4.639310 GTCTCAATGTCTCAATGGCAGATT 59.361 41.667 0.00 0.00 31.78 2.40
571 577 5.819379 GTCTCAATGTCTCAATGGCAGATTA 59.181 40.000 0.00 0.00 31.78 1.75
572 578 6.018098 GTCTCAATGTCTCAATGGCAGATTAG 60.018 42.308 0.00 0.00 31.78 1.73
573 579 4.577693 TCAATGTCTCAATGGCAGATTAGC 59.422 41.667 0.00 0.00 31.78 3.09
584 590 2.019984 GCAGATTAGCCAAAGTCAGGG 58.980 52.381 0.00 0.00 0.00 4.45
585 591 2.648059 CAGATTAGCCAAAGTCAGGGG 58.352 52.381 0.00 0.00 0.00 4.79
586 592 2.239654 CAGATTAGCCAAAGTCAGGGGA 59.760 50.000 0.00 0.00 0.00 4.81
587 593 3.117738 CAGATTAGCCAAAGTCAGGGGAT 60.118 47.826 0.00 0.00 0.00 3.85
588 594 3.137360 AGATTAGCCAAAGTCAGGGGATC 59.863 47.826 0.00 0.00 0.00 3.36
589 595 1.213296 TAGCCAAAGTCAGGGGATCC 58.787 55.000 1.92 1.92 0.00 3.36
590 596 0.551131 AGCCAAAGTCAGGGGATCCT 60.551 55.000 12.58 0.00 46.26 3.24
591 597 0.106967 GCCAAAGTCAGGGGATCCTC 60.107 60.000 12.58 7.90 42.67 3.71
592 598 0.179000 CCAAAGTCAGGGGATCCTCG 59.821 60.000 12.58 4.32 42.67 4.63
593 599 0.905357 CAAAGTCAGGGGATCCTCGT 59.095 55.000 12.58 0.44 42.67 4.18
594 600 1.134670 CAAAGTCAGGGGATCCTCGTC 60.135 57.143 12.58 3.66 42.67 4.20
600 606 0.479378 AGGGGATCCTCGTCCTAGAC 59.521 60.000 12.58 0.00 39.80 2.59
619 625 0.249280 CGAAGCCCACCCAAACAAAC 60.249 55.000 0.00 0.00 0.00 2.93
653 659 1.839894 CTACCCTGCAAGATCCCCC 59.160 63.158 0.00 0.00 34.07 5.40
721 727 2.233654 CGCTCCGCCTCAAATCTCG 61.234 63.158 0.00 0.00 0.00 4.04
769 775 2.041405 CTGGTCTCCCTCCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
797 803 2.285668 CAGCCTCCTTCCCCTCCA 60.286 66.667 0.00 0.00 0.00 3.86
843 849 2.447887 CGCACGGCACTCATGAGTC 61.448 63.158 25.58 18.55 40.20 3.36
845 851 2.125912 ACGGCACTCATGAGTCGC 60.126 61.111 27.54 27.74 40.20 5.19
867 873 0.533755 CTCCAGATCCACCAATCGCC 60.534 60.000 0.00 0.00 0.00 5.54
891 903 4.821589 GAGTTGCGCCCCTCTCCG 62.822 72.222 4.18 0.00 0.00 4.63
917 932 1.944024 ACCGTCGCTCTCTCTGATTAG 59.056 52.381 0.00 0.00 0.00 1.73
972 987 2.481952 GCAGAGTTCTTTGTTCGCAGAT 59.518 45.455 0.00 0.00 35.04 2.90
985 1000 1.154205 CGCAGATAGGCAGGGTTTCG 61.154 60.000 0.00 0.00 0.00 3.46
1208 1230 4.929808 GGCACAATAGTCCGGTTCATATAG 59.070 45.833 0.00 0.00 0.00 1.31
1217 1239 7.598759 AGTCCGGTTCATATAGTTTACTGAT 57.401 36.000 0.00 0.00 0.00 2.90
1272 1294 2.593026 TGTCCACCCCAATTTCAGTTC 58.407 47.619 0.00 0.00 0.00 3.01
1303 1325 2.673258 GAACCCCCTTCACTTTTGGAA 58.327 47.619 0.00 0.00 0.00 3.53
1392 1423 2.806019 GCCTCTGCTGTCATGACTATGG 60.806 54.545 25.55 18.00 32.92 2.74
1415 1446 6.016276 TGGAGAACCAAGAATTAGCAGTTTTC 60.016 38.462 0.00 0.00 43.91 2.29
1425 1459 7.224297 AGAATTAGCAGTTTTCACAGGTTCTA 58.776 34.615 0.00 0.00 0.00 2.10
1436 1483 3.266772 TCACAGGTTCTATGGGCTTTCAT 59.733 43.478 0.00 0.00 0.00 2.57
1461 1508 0.811281 GCTTGCAAGGCGGTTAGATT 59.189 50.000 27.10 0.00 0.00 2.40
1472 1519 2.601763 GCGGTTAGATTAGGTGTTGACG 59.398 50.000 0.00 0.00 0.00 4.35
1486 1533 3.260483 GACGCGCATCTCAGCCTG 61.260 66.667 5.73 0.00 0.00 4.85
1617 1668 0.622136 TCCCATGAGCTTGTGCAGAT 59.378 50.000 0.00 0.00 42.74 2.90
1804 1857 4.744631 CGCAAATCCAAAGCTTTAAACAGT 59.255 37.500 12.25 0.00 0.00 3.55
1823 1876 3.254166 CAGTAAATTCTTGTGCTGGTGCT 59.746 43.478 0.00 0.00 40.48 4.40
1924 1977 5.918011 CACCGTTAGTGTTTGCATATTTGTT 59.082 36.000 0.00 0.00 41.93 2.83
2001 2055 8.745590 AGGAGTTGTGTTAACTTTTGTGTATTT 58.254 29.630 7.22 0.00 0.00 1.40
2043 2097 2.556114 CCAAAGATGTGGAGGCCTCTTT 60.556 50.000 31.36 19.47 41.65 2.52
2094 2148 1.239296 TACGTGGACAGGGTGACTCG 61.239 60.000 0.00 0.00 0.00 4.18
2168 2222 4.988540 TGAGTTGAGATACGGACACAAAAG 59.011 41.667 0.00 0.00 0.00 2.27
2185 2239 3.503800 AAAGTAGAGCCGGAAAAGGTT 57.496 42.857 5.05 0.00 0.00 3.50
2272 2326 8.264347 TGATACTTGATACATCTAAAAGTGGCA 58.736 33.333 0.00 0.00 33.37 4.92
2319 2373 2.815503 TGATTGTCAGCATTGGACACAG 59.184 45.455 0.00 0.00 44.38 3.66
2401 2455 2.095364 AGCTCAACGTTTACGAGTCGAT 60.095 45.455 21.50 6.19 43.02 3.59
2879 2944 1.826054 CTGAGGGACGAGCGGATCT 60.826 63.158 0.00 0.00 0.00 2.75
2883 2948 0.820074 AGGGACGAGCGGATCTAGTG 60.820 60.000 0.00 0.00 30.48 2.74
3002 3067 1.209019 GAGAGCAGAAGCAATGGAGGA 59.791 52.381 0.00 0.00 45.49 3.71
3230 3328 4.421058 CTCGACTCGTAATCAATGGTTGA 58.579 43.478 0.00 0.00 45.01 3.18
3231 3329 4.421058 TCGACTCGTAATCAATGGTTGAG 58.579 43.478 0.00 0.00 43.98 3.02
3232 3330 3.000322 CGACTCGTAATCAATGGTTGAGC 60.000 47.826 0.00 0.00 43.98 4.26
3233 3331 4.184629 GACTCGTAATCAATGGTTGAGCT 58.815 43.478 0.00 0.00 43.98 4.09
3309 3408 7.392494 TGTATATCCATGCGGTTTAAAACAA 57.608 32.000 3.76 0.00 0.00 2.83
3311 3410 8.304596 TGTATATCCATGCGGTTTAAAACAAAA 58.695 29.630 3.76 0.00 0.00 2.44
3320 3419 7.217906 TGCGGTTTAAAACAAAAGGGATAATT 58.782 30.769 3.76 0.00 0.00 1.40
3321 3420 8.365647 TGCGGTTTAAAACAAAAGGGATAATTA 58.634 29.630 3.76 0.00 0.00 1.40
3322 3421 9.205719 GCGGTTTAAAACAAAAGGGATAATTAA 57.794 29.630 3.76 0.00 0.00 1.40
3401 3587 2.384382 CAGTGTTTGTCCAATTCACGC 58.616 47.619 8.88 0.32 33.79 5.34
3656 3842 5.484173 TGCAGTTGTCAACTTAAAGAGTG 57.516 39.130 15.73 4.42 40.46 3.51
3658 3844 4.201910 GCAGTTGTCAACTTAAAGAGTGCA 60.202 41.667 15.73 0.00 40.46 4.57
3808 4300 2.637382 TCTTGGAGGTGATAGTGTGCAA 59.363 45.455 0.00 0.00 0.00 4.08
4324 4816 2.749076 TCTTCATGATGAAACAAGGCCG 59.251 45.455 9.39 0.00 35.73 6.13
4690 5182 5.752955 GGCTGTCTCTGATGATCTTAACTTC 59.247 44.000 0.00 0.00 0.00 3.01
4780 5272 4.849813 TGGTTGGAGTGAAGATGATGAT 57.150 40.909 0.00 0.00 0.00 2.45
4879 5371 4.130118 GAGAGGCTGTTTCTCACAAGAAA 58.870 43.478 0.00 0.00 46.72 2.52
5104 5596 4.067896 CTCTGAAAAAGAAGGCACTAGCA 58.932 43.478 0.00 0.00 38.49 3.49
5248 5740 3.889538 GCTTTAGTTCAAAGTCCCCACTT 59.110 43.478 0.00 0.00 45.43 3.16
5276 5768 4.440808 TGAACCCCCTAGTCTGGATTTTA 58.559 43.478 0.00 0.00 0.00 1.52
5587 6079 1.221414 CGGAGATCGAAGAATTGGCC 58.779 55.000 0.00 0.00 43.58 5.36
5590 6082 3.217626 GGAGATCGAAGAATTGGCCAAT 58.782 45.455 25.73 25.73 43.58 3.16
5747 6239 2.351447 CCAGTGAATGCAGCTGAACTTG 60.351 50.000 20.43 5.51 32.39 3.16
5762 6254 0.179032 ACTTGGTGCGTCAATGGACA 60.179 50.000 0.13 0.00 44.54 4.02
5779 6271 2.166664 GGACACTGTAGCTAGTTCTGGG 59.833 54.545 0.00 0.00 0.00 4.45
5820 6312 0.804989 GTCATTTCTCAACCTGCCCG 59.195 55.000 0.00 0.00 0.00 6.13
5954 6455 1.742880 CCACATGGAGGCGACACAG 60.743 63.158 0.00 0.00 37.39 3.66
6055 6556 8.862550 AAGAATTGAAACTAGCAAAACTCTTG 57.137 30.769 0.00 0.00 29.39 3.02
6469 6970 3.114606 TCCTCAAATGATGTCTGCCCTA 58.885 45.455 0.00 0.00 0.00 3.53
6478 6979 4.870636 TGATGTCTGCCCTAAAATCCATT 58.129 39.130 0.00 0.00 0.00 3.16
6949 7487 8.903570 TGCATCCGTGTAACAAATATTTTTAG 57.096 30.769 0.00 0.00 35.74 1.85
6950 7488 8.516234 TGCATCCGTGTAACAAATATTTTTAGT 58.484 29.630 0.00 0.00 35.74 2.24
7017 7558 2.034687 CACAGGAGCAACAGGGGG 59.965 66.667 0.00 0.00 0.00 5.40
7038 7579 4.506758 GGGCCGTACAAACAATAGTAGAA 58.493 43.478 0.00 0.00 0.00 2.10
7039 7580 5.121105 GGGCCGTACAAACAATAGTAGAAT 58.879 41.667 0.00 0.00 0.00 2.40
7040 7581 5.235831 GGGCCGTACAAACAATAGTAGAATC 59.764 44.000 0.00 0.00 0.00 2.52
7051 7592 9.793252 AAACAATAGTAGAATCATCATTTGTGC 57.207 29.630 0.00 0.00 0.00 4.57
7080 7621 4.410492 CCTCAAGGTTTTCAACATCGAG 57.590 45.455 0.00 0.00 0.00 4.04
7107 7648 4.704057 AGAAAGGCTGATGAGGAAATTCAC 59.296 41.667 0.00 0.00 0.00 3.18
7109 7650 4.246712 AGGCTGATGAGGAAATTCACAT 57.753 40.909 5.02 5.02 0.00 3.21
7112 7653 5.826737 AGGCTGATGAGGAAATTCACATAAG 59.173 40.000 10.37 10.37 0.00 1.73
7113 7655 5.591877 GGCTGATGAGGAAATTCACATAAGT 59.408 40.000 13.88 0.00 0.00 2.24
7120 7662 7.885297 TGAGGAAATTCACATAAGTTTGAAGG 58.115 34.615 0.00 0.00 35.25 3.46
7122 7664 8.250143 AGGAAATTCACATAAGTTTGAAGGTT 57.750 30.769 0.00 0.00 35.25 3.50
7165 7707 3.494924 CCTCGGGATCACATTAGCATCAA 60.495 47.826 0.00 0.00 0.00 2.57
7172 7714 2.025037 TCACATTAGCATCAAGGCCCTT 60.025 45.455 0.00 0.00 0.00 3.95
7173 7715 2.100252 CACATTAGCATCAAGGCCCTTG 59.900 50.000 17.74 17.74 42.25 3.61
7174 7716 1.068127 CATTAGCATCAAGGCCCTTGC 59.932 52.381 19.00 8.28 40.84 4.01
7175 7717 0.332632 TTAGCATCAAGGCCCTTGCT 59.667 50.000 19.00 15.63 46.51 3.91
7184 8213 4.464008 TCAAGGCCCTTGCTAATATCTTG 58.536 43.478 19.00 3.30 40.84 3.02
7190 8219 4.829492 GCCCTTGCTAATATCTTGTGGATT 59.171 41.667 0.00 0.00 33.58 3.01
7192 8221 5.474876 CCCTTGCTAATATCTTGTGGATTCC 59.525 44.000 0.00 0.00 35.98 3.01
7200 8229 9.482627 CTAATATCTTGTGGATTCCAAGTACTC 57.517 37.037 7.05 0.00 40.15 2.59
7201 8230 4.553330 TCTTGTGGATTCCAAGTACTCC 57.447 45.455 7.05 0.00 40.15 3.85
7202 8231 3.263425 TCTTGTGGATTCCAAGTACTCCC 59.737 47.826 7.05 0.00 40.15 4.30
7203 8232 2.915869 TGTGGATTCCAAGTACTCCCT 58.084 47.619 7.05 0.00 34.18 4.20
7204 8233 2.838202 TGTGGATTCCAAGTACTCCCTC 59.162 50.000 7.05 0.00 34.18 4.30
7205 8234 2.170817 GTGGATTCCAAGTACTCCCTCC 59.829 54.545 7.05 0.00 34.18 4.30
7206 8235 1.413077 GGATTCCAAGTACTCCCTCCG 59.587 57.143 0.00 0.00 0.00 4.63
7207 8236 2.385803 GATTCCAAGTACTCCCTCCGA 58.614 52.381 0.00 0.00 0.00 4.55
7209 8238 2.068834 TCCAAGTACTCCCTCCGATC 57.931 55.000 0.00 0.00 0.00 3.69
7210 8239 1.041437 CCAAGTACTCCCTCCGATCC 58.959 60.000 0.00 0.00 0.00 3.36
7211 8240 1.688311 CCAAGTACTCCCTCCGATCCA 60.688 57.143 0.00 0.00 0.00 3.41
7213 8242 2.500098 CAAGTACTCCCTCCGATCCAAA 59.500 50.000 0.00 0.00 0.00 3.28
7215 8244 3.385115 AGTACTCCCTCCGATCCAAAAT 58.615 45.455 0.00 0.00 0.00 1.82
7217 8246 4.966805 AGTACTCCCTCCGATCCAAAATAA 59.033 41.667 0.00 0.00 0.00 1.40
7220 8249 5.133221 ACTCCCTCCGATCCAAAATAATTG 58.867 41.667 0.00 0.00 0.00 2.32
7222 8251 5.952387 TCCCTCCGATCCAAAATAATTGAT 58.048 37.500 0.00 0.00 0.00 2.57
7223 8252 5.769662 TCCCTCCGATCCAAAATAATTGATG 59.230 40.000 0.00 0.00 0.00 3.07
7224 8253 5.464168 CCTCCGATCCAAAATAATTGATGC 58.536 41.667 0.00 0.00 0.00 3.91
7225 8254 5.009911 CCTCCGATCCAAAATAATTGATGCA 59.990 40.000 0.00 0.00 0.00 3.96
7227 8256 6.272318 TCCGATCCAAAATAATTGATGCAAC 58.728 36.000 0.00 0.00 0.00 4.17
7230 8259 6.418819 CGATCCAAAATAATTGATGCAACCTC 59.581 38.462 0.00 0.00 0.00 3.85
7231 8260 6.855763 TCCAAAATAATTGATGCAACCTCT 57.144 33.333 0.00 0.00 0.00 3.69
7235 8264 9.683069 CCAAAATAATTGATGCAACCTCTATAC 57.317 33.333 0.00 0.00 0.00 1.47
7240 8269 7.886629 AATTGATGCAACCTCTATACAATGT 57.113 32.000 0.00 0.00 0.00 2.71
7242 8271 6.682423 TGATGCAACCTCTATACAATGTTG 57.318 37.500 0.00 0.00 39.35 3.33
7256 8285 5.420725 ACAATGTTGTATAGAGACTGCCA 57.579 39.130 0.00 0.00 40.16 4.92
7257 8286 5.994250 ACAATGTTGTATAGAGACTGCCAT 58.006 37.500 0.00 0.00 40.16 4.40
7258 8287 6.418101 ACAATGTTGTATAGAGACTGCCATT 58.582 36.000 0.00 0.00 40.16 3.16
7259 8288 6.886459 ACAATGTTGTATAGAGACTGCCATTT 59.114 34.615 0.00 0.00 40.16 2.32
7260 8289 8.046708 ACAATGTTGTATAGAGACTGCCATTTA 58.953 33.333 0.00 0.00 40.16 1.40
7261 8290 8.892723 CAATGTTGTATAGAGACTGCCATTTAA 58.107 33.333 0.00 0.00 0.00 1.52
7262 8291 9.632638 AATGTTGTATAGAGACTGCCATTTAAT 57.367 29.630 0.00 0.00 0.00 1.40
7264 8293 9.461312 TGTTGTATAGAGACTGCCATTTAATTT 57.539 29.630 0.00 0.00 0.00 1.82
7268 8358 9.289782 GTATAGAGACTGCCATTTAATTTGGAT 57.710 33.333 8.72 0.00 36.26 3.41
7279 8369 2.717639 AATTTGGATCGGAGGGAGTG 57.282 50.000 0.00 0.00 0.00 3.51
7306 8396 7.572910 GCTTGTTTGTTGTTTGATTTCCAGTTT 60.573 33.333 0.00 0.00 0.00 2.66
7365 8458 3.374058 CCAGTTGGTCGGAACATACATTC 59.626 47.826 0.00 0.00 0.00 2.67
7373 8466 2.951642 CGGAACATACATTCCCATGCTT 59.048 45.455 0.00 0.00 44.72 3.91
7376 8469 4.024048 GGAACATACATTCCCATGCTTACG 60.024 45.833 0.00 0.00 42.16 3.18
7382 8475 5.347620 ACATTCCCATGCTTACGTAGTTA 57.652 39.130 0.00 0.00 36.33 2.24
7387 8480 4.038763 TCCCATGCTTACGTAGTTATCAGG 59.961 45.833 0.00 0.00 37.78 3.86
7393 8486 6.869695 TGCTTACGTAGTTATCAGGAAATCA 58.130 36.000 0.00 0.00 37.78 2.57
7395 8488 7.438160 TGCTTACGTAGTTATCAGGAAATCATG 59.562 37.037 0.00 0.00 37.78 3.07
7397 8490 9.698309 CTTACGTAGTTATCAGGAAATCATGAT 57.302 33.333 14.17 14.17 45.25 2.45
7409 8502 9.040259 TCAGGAAATCATGATTACTAGGATAGG 57.960 37.037 21.00 8.93 35.81 2.57
7410 8503 9.040259 CAGGAAATCATGATTACTAGGATAGGA 57.960 37.037 21.00 0.00 44.97 2.94
7411 8504 9.796242 AGGAAATCATGATTACTAGGATAGGAT 57.204 33.333 21.00 0.81 44.97 3.24
7428 8521 4.823790 AGGATGTTTGTGTTTTCGGTAC 57.176 40.909 0.00 0.00 0.00 3.34
7431 8524 3.408288 TGTTTGTGTTTTCGGTACTGC 57.592 42.857 0.00 0.00 0.00 4.40
7436 8529 1.191647 GTGTTTTCGGTACTGCAGTCG 59.808 52.381 25.56 21.67 0.00 4.18
7437 8530 0.788391 GTTTTCGGTACTGCAGTCGG 59.212 55.000 25.56 17.99 0.00 4.79
7438 8531 0.390124 TTTTCGGTACTGCAGTCGGT 59.610 50.000 25.56 1.20 35.61 4.69
7439 8532 0.038892 TTTCGGTACTGCAGTCGGTC 60.039 55.000 25.56 12.20 33.08 4.79
7450 8543 0.531090 CAGTCGGTCGGGTTTGTTCA 60.531 55.000 0.00 0.00 0.00 3.18
7457 8550 0.179004 TCGGGTTTGTTCATGTGCCT 60.179 50.000 0.00 0.00 0.00 4.75
7464 8557 2.886862 TGTTCATGTGCCTTGTTTGG 57.113 45.000 0.00 0.00 0.00 3.28
7503 8624 5.374071 AGGAAACTGTTTTAGACGTTGGAT 58.626 37.500 7.28 0.00 41.13 3.41
7508 8629 4.684703 ACTGTTTTAGACGTTGGATTCTCG 59.315 41.667 0.00 0.00 0.00 4.04
7518 8639 3.190874 GTTGGATTCTCGTGGATGAGAC 58.809 50.000 0.00 0.00 44.38 3.36
7526 8647 0.716108 CGTGGATGAGACGTTGCTTC 59.284 55.000 0.00 0.00 32.06 3.86
7555 8676 0.588252 GTCTGTTTGATGCACGCACT 59.412 50.000 0.00 0.00 0.00 4.40
7597 8723 1.550130 TAAGCACGGGAGGGGAACAG 61.550 60.000 0.00 0.00 0.00 3.16
7598 8724 3.319198 GCACGGGAGGGGAACAGA 61.319 66.667 0.00 0.00 0.00 3.41
7602 8728 0.115745 ACGGGAGGGGAACAGACTTA 59.884 55.000 0.00 0.00 0.00 2.24
7618 8744 7.317722 ACAGACTTAGGTGGAGAAAATAACT 57.682 36.000 0.00 0.00 0.00 2.24
7632 8758 8.398665 GGAGAAAATAACTGCCATAGTAAACAG 58.601 37.037 0.00 0.00 39.18 3.16
7672 9508 3.244491 TGCCAAAATTCATCACCAAAGGG 60.244 43.478 0.00 0.00 41.29 3.95
7709 9545 9.936759 TTTCTTGTTGATACTTTCTTTTGGTTT 57.063 25.926 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.862325 ATGGTCTGAGTATGAACAAAATTACA 57.138 30.769 0.00 0.00 34.59 2.41
30 31 9.357161 ACATCAAAGTACCTGTAATTGGTAAAA 57.643 29.630 0.00 0.00 41.16 1.52
31 32 8.788806 CACATCAAAGTACCTGTAATTGGTAAA 58.211 33.333 0.00 0.00 41.16 2.01
32 33 7.392113 CCACATCAAAGTACCTGTAATTGGTAA 59.608 37.037 0.00 0.00 41.16 2.85
33 34 6.882140 CCACATCAAAGTACCTGTAATTGGTA 59.118 38.462 0.00 0.00 38.88 3.25
34 35 5.710099 CCACATCAAAGTACCTGTAATTGGT 59.290 40.000 0.00 0.00 41.28 3.67
35 36 5.943416 TCCACATCAAAGTACCTGTAATTGG 59.057 40.000 0.00 0.00 0.00 3.16
36 37 6.128007 GGTCCACATCAAAGTACCTGTAATTG 60.128 42.308 0.00 0.00 0.00 2.32
37 38 5.944007 GGTCCACATCAAAGTACCTGTAATT 59.056 40.000 0.00 0.00 0.00 1.40
38 39 5.250774 AGGTCCACATCAAAGTACCTGTAAT 59.749 40.000 0.00 0.00 36.03 1.89
39 40 4.595781 AGGTCCACATCAAAGTACCTGTAA 59.404 41.667 0.00 0.00 36.03 2.41
40 41 4.164981 AGGTCCACATCAAAGTACCTGTA 58.835 43.478 0.00 0.00 36.03 2.74
41 42 2.979678 AGGTCCACATCAAAGTACCTGT 59.020 45.455 0.00 0.00 36.03 4.00
42 43 3.703001 AGGTCCACATCAAAGTACCTG 57.297 47.619 0.00 0.00 36.03 4.00
43 44 5.836024 TTTAGGTCCACATCAAAGTACCT 57.164 39.130 0.00 0.00 40.38 3.08
44 45 6.095021 GGATTTTAGGTCCACATCAAAGTACC 59.905 42.308 0.00 0.00 35.76 3.34
45 46 6.657541 TGGATTTTAGGTCCACATCAAAGTAC 59.342 38.462 0.00 0.00 40.72 2.73
46 47 6.785076 TGGATTTTAGGTCCACATCAAAGTA 58.215 36.000 0.00 0.00 40.72 2.24
47 48 5.640147 TGGATTTTAGGTCCACATCAAAGT 58.360 37.500 0.00 0.00 40.72 2.66
48 49 6.434028 TCTTGGATTTTAGGTCCACATCAAAG 59.566 38.462 0.00 0.00 45.05 2.77
49 50 6.310941 TCTTGGATTTTAGGTCCACATCAAA 58.689 36.000 0.00 0.00 45.05 2.69
50 51 5.886609 TCTTGGATTTTAGGTCCACATCAA 58.113 37.500 0.00 0.00 45.05 2.57
51 52 5.512942 TCTTGGATTTTAGGTCCACATCA 57.487 39.130 0.00 0.00 45.05 3.07
52 53 6.834168 TTTCTTGGATTTTAGGTCCACATC 57.166 37.500 0.00 0.00 45.05 3.06
53 54 7.797121 ATTTTCTTGGATTTTAGGTCCACAT 57.203 32.000 0.00 0.00 45.05 3.21
54 55 7.726291 TGTATTTTCTTGGATTTTAGGTCCACA 59.274 33.333 0.00 0.00 45.05 4.17
55 56 8.117813 TGTATTTTCTTGGATTTTAGGTCCAC 57.882 34.615 0.00 0.00 45.05 4.02
56 57 8.713708 TTGTATTTTCTTGGATTTTAGGTCCA 57.286 30.769 0.00 0.00 43.77 4.02
57 58 9.639601 CTTTGTATTTTCTTGGATTTTAGGTCC 57.360 33.333 0.00 0.00 36.26 4.46
107 108 9.898152 TGGAAGGTGTTTTCAAAAGATTTTATT 57.102 25.926 0.00 0.00 0.00 1.40
109 110 9.541143 GATGGAAGGTGTTTTCAAAAGATTTTA 57.459 29.630 0.00 0.00 0.00 1.52
110 111 8.267183 AGATGGAAGGTGTTTTCAAAAGATTTT 58.733 29.630 0.00 0.00 0.00 1.82
111 112 7.795047 AGATGGAAGGTGTTTTCAAAAGATTT 58.205 30.769 0.00 0.00 0.00 2.17
112 113 7.288621 AGAGATGGAAGGTGTTTTCAAAAGATT 59.711 33.333 0.00 0.00 0.00 2.40
113 114 6.779539 AGAGATGGAAGGTGTTTTCAAAAGAT 59.220 34.615 0.00 0.00 0.00 2.40
114 115 6.129179 AGAGATGGAAGGTGTTTTCAAAAGA 58.871 36.000 0.00 0.00 0.00 2.52
115 116 6.396829 AGAGATGGAAGGTGTTTTCAAAAG 57.603 37.500 0.00 0.00 0.00 2.27
116 117 6.790232 AAGAGATGGAAGGTGTTTTCAAAA 57.210 33.333 0.00 0.00 0.00 2.44
117 118 6.406849 CCAAAGAGATGGAAGGTGTTTTCAAA 60.407 38.462 0.00 0.00 43.54 2.69
118 119 5.068987 CCAAAGAGATGGAAGGTGTTTTCAA 59.931 40.000 0.00 0.00 43.54 2.69
119 120 4.584325 CCAAAGAGATGGAAGGTGTTTTCA 59.416 41.667 0.00 0.00 43.54 2.69
120 121 4.827284 TCCAAAGAGATGGAAGGTGTTTTC 59.173 41.667 0.00 0.00 46.36 2.29
121 122 4.803452 TCCAAAGAGATGGAAGGTGTTTT 58.197 39.130 0.00 0.00 46.36 2.43
122 123 4.453480 TCCAAAGAGATGGAAGGTGTTT 57.547 40.909 0.00 0.00 46.36 2.83
131 132 4.401925 GGGGTATCAATCCAAAGAGATGG 58.598 47.826 0.00 0.00 42.12 3.51
132 133 4.067896 CGGGGTATCAATCCAAAGAGATG 58.932 47.826 0.00 0.00 0.00 2.90
133 134 3.496870 GCGGGGTATCAATCCAAAGAGAT 60.497 47.826 0.00 0.00 0.00 2.75
134 135 2.158813 GCGGGGTATCAATCCAAAGAGA 60.159 50.000 0.00 0.00 0.00 3.10
135 136 2.222027 GCGGGGTATCAATCCAAAGAG 58.778 52.381 0.00 0.00 0.00 2.85
136 137 1.133915 GGCGGGGTATCAATCCAAAGA 60.134 52.381 0.00 0.00 0.00 2.52
137 138 1.133792 AGGCGGGGTATCAATCCAAAG 60.134 52.381 0.00 0.00 0.00 2.77
138 139 0.923358 AGGCGGGGTATCAATCCAAA 59.077 50.000 0.00 0.00 0.00 3.28
139 140 0.182537 CAGGCGGGGTATCAATCCAA 59.817 55.000 0.00 0.00 0.00 3.53
140 141 0.692756 TCAGGCGGGGTATCAATCCA 60.693 55.000 0.00 0.00 0.00 3.41
141 142 0.693049 ATCAGGCGGGGTATCAATCC 59.307 55.000 0.00 0.00 0.00 3.01
142 143 2.568623 AATCAGGCGGGGTATCAATC 57.431 50.000 0.00 0.00 0.00 2.67
143 144 2.174639 TGAAATCAGGCGGGGTATCAAT 59.825 45.455 0.00 0.00 0.00 2.57
144 145 1.562008 TGAAATCAGGCGGGGTATCAA 59.438 47.619 0.00 0.00 0.00 2.57
145 146 1.208706 TGAAATCAGGCGGGGTATCA 58.791 50.000 0.00 0.00 0.00 2.15
146 147 2.341846 TTGAAATCAGGCGGGGTATC 57.658 50.000 0.00 0.00 0.00 2.24
147 148 4.657814 ATATTGAAATCAGGCGGGGTAT 57.342 40.909 0.00 0.00 0.00 2.73
148 149 5.570205 TTATATTGAAATCAGGCGGGGTA 57.430 39.130 0.00 0.00 0.00 3.69
149 150 4.447138 TTATATTGAAATCAGGCGGGGT 57.553 40.909 0.00 0.00 0.00 4.95
150 151 5.782893 TTTTATATTGAAATCAGGCGGGG 57.217 39.130 0.00 0.00 0.00 5.73
151 152 6.146021 GCAATTTTATATTGAAATCAGGCGGG 59.854 38.462 0.00 0.00 0.00 6.13
152 153 6.925165 AGCAATTTTATATTGAAATCAGGCGG 59.075 34.615 0.00 0.00 0.00 6.13
153 154 7.935338 AGCAATTTTATATTGAAATCAGGCG 57.065 32.000 0.00 0.00 0.00 5.52
154 155 8.919661 GCTAGCAATTTTATATTGAAATCAGGC 58.080 33.333 10.63 0.00 0.00 4.85
155 156 9.970395 TGCTAGCAATTTTATATTGAAATCAGG 57.030 29.630 16.84 0.00 0.00 3.86
170 171 9.868277 GATAGATACATAGTCTGCTAGCAATTT 57.132 33.333 19.86 9.14 0.00 1.82
171 172 9.029368 TGATAGATACATAGTCTGCTAGCAATT 57.971 33.333 19.86 9.50 0.00 2.32
172 173 8.586879 TGATAGATACATAGTCTGCTAGCAAT 57.413 34.615 19.86 6.32 0.00 3.56
173 174 8.586879 ATGATAGATACATAGTCTGCTAGCAA 57.413 34.615 19.86 3.75 29.63 3.91
174 175 8.586879 AATGATAGATACATAGTCTGCTAGCA 57.413 34.615 18.22 18.22 0.00 3.49
175 176 9.299963 CAAATGATAGATACATAGTCTGCTAGC 57.700 37.037 8.10 8.10 0.00 3.42
228 229 6.512903 GCAGCTTCTTTACCGAAGTACTTTTT 60.513 38.462 10.02 0.00 41.84 1.94
229 230 5.049612 GCAGCTTCTTTACCGAAGTACTTTT 60.050 40.000 10.02 0.19 41.84 2.27
230 231 4.451435 GCAGCTTCTTTACCGAAGTACTTT 59.549 41.667 10.02 0.00 41.84 2.66
231 232 3.995048 GCAGCTTCTTTACCGAAGTACTT 59.005 43.478 8.13 8.13 41.84 2.24
232 233 3.258622 AGCAGCTTCTTTACCGAAGTACT 59.741 43.478 0.00 0.00 41.84 2.73
233 234 3.368236 CAGCAGCTTCTTTACCGAAGTAC 59.632 47.826 0.00 0.00 41.84 2.73
234 235 3.006537 ACAGCAGCTTCTTTACCGAAGTA 59.993 43.478 0.00 0.00 41.84 2.24
235 236 2.224305 ACAGCAGCTTCTTTACCGAAGT 60.224 45.455 0.00 0.00 41.84 3.01
236 237 2.417719 ACAGCAGCTTCTTTACCGAAG 58.582 47.619 0.00 0.00 42.52 3.79
237 238 2.543777 ACAGCAGCTTCTTTACCGAA 57.456 45.000 0.00 0.00 0.00 4.30
238 239 2.143122 CAACAGCAGCTTCTTTACCGA 58.857 47.619 0.00 0.00 0.00 4.69
239 240 1.197721 CCAACAGCAGCTTCTTTACCG 59.802 52.381 0.00 0.00 0.00 4.02
240 241 2.226674 GTCCAACAGCAGCTTCTTTACC 59.773 50.000 0.00 0.00 0.00 2.85
241 242 2.096218 CGTCCAACAGCAGCTTCTTTAC 60.096 50.000 0.00 0.00 0.00 2.01
242 243 2.143122 CGTCCAACAGCAGCTTCTTTA 58.857 47.619 0.00 0.00 0.00 1.85
243 244 0.947244 CGTCCAACAGCAGCTTCTTT 59.053 50.000 0.00 0.00 0.00 2.52
244 245 0.106708 TCGTCCAACAGCAGCTTCTT 59.893 50.000 0.00 0.00 0.00 2.52
245 246 0.601311 GTCGTCCAACAGCAGCTTCT 60.601 55.000 0.00 0.00 0.00 2.85
246 247 0.601311 AGTCGTCCAACAGCAGCTTC 60.601 55.000 0.00 0.00 0.00 3.86
247 248 0.179045 AAGTCGTCCAACAGCAGCTT 60.179 50.000 0.00 0.00 0.00 3.74
248 249 0.882042 CAAGTCGTCCAACAGCAGCT 60.882 55.000 0.00 0.00 0.00 4.24
249 250 0.880278 TCAAGTCGTCCAACAGCAGC 60.880 55.000 0.00 0.00 0.00 5.25
250 251 1.143305 CTCAAGTCGTCCAACAGCAG 58.857 55.000 0.00 0.00 0.00 4.24
251 252 0.880278 GCTCAAGTCGTCCAACAGCA 60.880 55.000 0.00 0.00 0.00 4.41
252 253 0.880278 TGCTCAAGTCGTCCAACAGC 60.880 55.000 0.00 0.00 0.00 4.40
253 254 1.261619 GTTGCTCAAGTCGTCCAACAG 59.738 52.381 0.00 0.00 36.64 3.16
254 255 1.295792 GTTGCTCAAGTCGTCCAACA 58.704 50.000 0.00 0.00 36.64 3.33
255 256 1.295792 TGTTGCTCAAGTCGTCCAAC 58.704 50.000 0.00 0.00 37.04 3.77
256 257 2.031258 TTGTTGCTCAAGTCGTCCAA 57.969 45.000 0.00 0.00 0.00 3.53
257 258 1.872952 CATTGTTGCTCAAGTCGTCCA 59.127 47.619 2.04 0.00 39.55 4.02
258 259 1.873591 ACATTGTTGCTCAAGTCGTCC 59.126 47.619 2.04 0.00 39.55 4.79
259 260 3.002246 TCAACATTGTTGCTCAAGTCGTC 59.998 43.478 22.02 0.00 39.55 4.20
260 261 2.942376 TCAACATTGTTGCTCAAGTCGT 59.058 40.909 22.02 0.00 39.55 4.34
261 262 3.242706 TGTCAACATTGTTGCTCAAGTCG 60.243 43.478 22.02 0.00 39.55 4.18
262 263 4.285292 CTGTCAACATTGTTGCTCAAGTC 58.715 43.478 22.02 8.50 39.55 3.01
263 264 3.489738 GCTGTCAACATTGTTGCTCAAGT 60.490 43.478 22.02 0.00 39.55 3.16
264 265 3.047796 GCTGTCAACATTGTTGCTCAAG 58.952 45.455 22.02 16.36 39.55 3.02
265 266 2.426381 TGCTGTCAACATTGTTGCTCAA 59.574 40.909 22.02 4.79 40.53 3.02
266 267 2.022934 TGCTGTCAACATTGTTGCTCA 58.977 42.857 22.02 20.01 0.00 4.26
267 268 2.606308 CCTGCTGTCAACATTGTTGCTC 60.606 50.000 22.02 17.21 0.00 4.26
268 269 1.338973 CCTGCTGTCAACATTGTTGCT 59.661 47.619 22.02 0.00 0.00 3.91
269 270 1.603678 CCCTGCTGTCAACATTGTTGC 60.604 52.381 22.02 17.28 0.00 4.17
270 271 1.000060 CCCCTGCTGTCAACATTGTTG 60.000 52.381 21.04 21.04 0.00 3.33
271 272 1.133513 TCCCCTGCTGTCAACATTGTT 60.134 47.619 0.00 0.00 0.00 2.83
272 273 0.478072 TCCCCTGCTGTCAACATTGT 59.522 50.000 0.00 0.00 0.00 2.71
273 274 1.843368 ATCCCCTGCTGTCAACATTG 58.157 50.000 0.00 0.00 0.00 2.82
274 275 2.173519 CAATCCCCTGCTGTCAACATT 58.826 47.619 0.00 0.00 0.00 2.71
275 276 1.843368 CAATCCCCTGCTGTCAACAT 58.157 50.000 0.00 0.00 0.00 2.71
276 277 0.895100 GCAATCCCCTGCTGTCAACA 60.895 55.000 0.00 0.00 39.34 3.33
277 278 1.885871 GCAATCCCCTGCTGTCAAC 59.114 57.895 0.00 0.00 39.34 3.18
278 279 4.421365 GCAATCCCCTGCTGTCAA 57.579 55.556 0.00 0.00 39.34 3.18
284 285 1.686325 TACTCCGAGCAATCCCCTGC 61.686 60.000 0.00 0.00 42.97 4.85
285 286 1.001406 GATACTCCGAGCAATCCCCTG 59.999 57.143 0.00 0.00 0.00 4.45
286 287 1.343069 GATACTCCGAGCAATCCCCT 58.657 55.000 0.00 0.00 0.00 4.79
287 288 1.001406 CTGATACTCCGAGCAATCCCC 59.999 57.143 0.00 0.00 0.00 4.81
288 289 1.001406 CCTGATACTCCGAGCAATCCC 59.999 57.143 0.00 0.00 0.00 3.85
289 290 1.001406 CCCTGATACTCCGAGCAATCC 59.999 57.143 0.00 0.00 0.00 3.01
290 291 1.689273 ACCCTGATACTCCGAGCAATC 59.311 52.381 0.00 0.13 0.00 2.67
291 292 1.794714 ACCCTGATACTCCGAGCAAT 58.205 50.000 0.00 0.00 0.00 3.56
292 293 2.307768 CTACCCTGATACTCCGAGCAA 58.692 52.381 0.00 0.00 0.00 3.91
293 294 1.982660 CTACCCTGATACTCCGAGCA 58.017 55.000 0.00 0.00 0.00 4.26
294 295 0.599060 GCTACCCTGATACTCCGAGC 59.401 60.000 0.00 0.00 0.00 5.03
295 296 1.609555 GTGCTACCCTGATACTCCGAG 59.390 57.143 0.00 0.00 0.00 4.63
296 297 1.214673 AGTGCTACCCTGATACTCCGA 59.785 52.381 0.00 0.00 0.00 4.55
297 298 1.338337 CAGTGCTACCCTGATACTCCG 59.662 57.143 0.00 0.00 31.38 4.63
298 299 1.069358 GCAGTGCTACCCTGATACTCC 59.931 57.143 8.18 0.00 31.38 3.85
299 300 1.069358 GGCAGTGCTACCCTGATACTC 59.931 57.143 16.11 0.00 31.38 2.59
328 329 1.428448 TTCGAATCACCAGCGAAGTG 58.572 50.000 0.00 0.00 38.89 3.16
405 407 9.116067 CCTCCATTCGGAATTACTTATTACAAA 57.884 33.333 0.00 0.00 42.21 2.83
406 408 8.487848 TCCTCCATTCGGAATTACTTATTACAA 58.512 33.333 0.00 0.00 42.21 2.41
407 409 8.025270 TCCTCCATTCGGAATTACTTATTACA 57.975 34.615 0.00 0.00 42.21 2.41
408 410 8.148999 ACTCCTCCATTCGGAATTACTTATTAC 58.851 37.037 0.00 0.00 42.21 1.89
409 411 8.258850 ACTCCTCCATTCGGAATTACTTATTA 57.741 34.615 0.00 0.00 42.21 0.98
410 412 7.138054 ACTCCTCCATTCGGAATTACTTATT 57.862 36.000 0.00 0.00 42.21 1.40
411 413 6.749036 ACTCCTCCATTCGGAATTACTTAT 57.251 37.500 0.00 0.00 42.21 1.73
412 414 6.837568 AGTACTCCTCCATTCGGAATTACTTA 59.162 38.462 0.00 0.00 42.21 2.24
413 415 5.661759 AGTACTCCTCCATTCGGAATTACTT 59.338 40.000 0.00 0.00 42.21 2.24
414 416 5.209659 AGTACTCCTCCATTCGGAATTACT 58.790 41.667 0.00 2.27 42.21 2.24
415 417 5.532664 AGTACTCCTCCATTCGGAATTAC 57.467 43.478 0.00 0.00 42.21 1.89
416 418 5.424252 ACAAGTACTCCTCCATTCGGAATTA 59.576 40.000 0.00 0.00 42.21 1.40
417 419 4.225267 ACAAGTACTCCTCCATTCGGAATT 59.775 41.667 0.00 0.00 42.21 2.17
418 420 3.775316 ACAAGTACTCCTCCATTCGGAAT 59.225 43.478 0.00 0.00 42.21 3.01
419 421 3.170717 ACAAGTACTCCTCCATTCGGAA 58.829 45.455 0.00 0.00 42.21 4.30
420 422 2.816411 ACAAGTACTCCTCCATTCGGA 58.184 47.619 0.00 0.00 39.79 4.55
421 423 4.939052 ATACAAGTACTCCTCCATTCGG 57.061 45.455 0.00 0.00 0.00 4.30
422 424 8.888579 AAAATATACAAGTACTCCTCCATTCG 57.111 34.615 0.00 0.00 0.00 3.34
424 426 9.628500 GGAAAAATATACAAGTACTCCTCCATT 57.372 33.333 0.00 0.00 0.00 3.16
425 427 8.778059 TGGAAAAATATACAAGTACTCCTCCAT 58.222 33.333 0.00 0.00 0.00 3.41
426 428 8.153221 TGGAAAAATATACAAGTACTCCTCCA 57.847 34.615 0.00 0.00 0.00 3.86
427 429 7.715686 CCTGGAAAAATATACAAGTACTCCTCC 59.284 40.741 0.00 0.00 0.00 4.30
428 430 8.265764 ACCTGGAAAAATATACAAGTACTCCTC 58.734 37.037 0.00 0.00 0.00 3.71
429 431 8.159229 ACCTGGAAAAATATACAAGTACTCCT 57.841 34.615 0.00 0.00 0.00 3.69
467 469 7.069331 ACAGTACCTTTTTGATGGAAAACATGA 59.931 33.333 0.00 0.00 40.72 3.07
477 483 5.291128 CGCCTAGTACAGTACCTTTTTGATG 59.709 44.000 7.13 0.00 0.00 3.07
492 498 2.094649 ACTTGTCAGCTTCGCCTAGTAC 60.095 50.000 0.00 0.00 0.00 2.73
493 499 2.094700 CACTTGTCAGCTTCGCCTAGTA 60.095 50.000 0.00 0.00 0.00 1.82
494 500 0.969894 ACTTGTCAGCTTCGCCTAGT 59.030 50.000 0.00 0.00 0.00 2.57
495 501 1.354040 CACTTGTCAGCTTCGCCTAG 58.646 55.000 0.00 0.00 0.00 3.02
496 502 0.037326 CCACTTGTCAGCTTCGCCTA 60.037 55.000 0.00 0.00 0.00 3.93
497 503 1.302033 CCACTTGTCAGCTTCGCCT 60.302 57.895 0.00 0.00 0.00 5.52
498 504 2.328099 CCCACTTGTCAGCTTCGCC 61.328 63.158 0.00 0.00 0.00 5.54
499 505 2.970974 GCCCACTTGTCAGCTTCGC 61.971 63.158 0.00 0.00 0.00 4.70
500 506 0.886490 AAGCCCACTTGTCAGCTTCG 60.886 55.000 0.00 0.00 41.60 3.79
501 507 3.027419 AAGCCCACTTGTCAGCTTC 57.973 52.632 0.00 0.00 41.60 3.86
503 509 0.536006 GTGAAGCCCACTTGTCAGCT 60.536 55.000 0.07 0.00 42.44 4.24
504 510 1.845809 CGTGAAGCCCACTTGTCAGC 61.846 60.000 5.47 0.00 43.53 4.26
505 511 1.845809 GCGTGAAGCCCACTTGTCAG 61.846 60.000 5.47 0.00 43.53 3.51
506 512 1.891919 GCGTGAAGCCCACTTGTCA 60.892 57.895 5.47 0.00 43.53 3.58
507 513 2.946762 GCGTGAAGCCCACTTGTC 59.053 61.111 5.47 0.00 43.53 3.18
516 522 2.281484 TCCCACCAAGCGTGAAGC 60.281 61.111 0.00 0.00 46.20 3.86
517 523 1.966451 GGTCCCACCAAGCGTGAAG 60.966 63.158 0.00 0.00 46.20 3.02
518 524 2.112297 GGTCCCACCAAGCGTGAA 59.888 61.111 0.00 0.00 46.20 3.18
519 525 3.948719 GGGTCCCACCAAGCGTGA 61.949 66.667 1.78 0.00 46.20 4.35
520 526 3.567579 ATGGGTCCCACCAAGCGTG 62.568 63.158 14.57 0.00 45.13 5.34
521 527 3.256960 ATGGGTCCCACCAAGCGT 61.257 61.111 14.57 0.00 45.13 5.07
522 528 2.751436 CATGGGTCCCACCAAGCG 60.751 66.667 14.57 0.00 45.13 4.68
523 529 1.978617 CACATGGGTCCCACCAAGC 60.979 63.158 14.57 0.00 45.13 4.01
524 530 0.609131 GACACATGGGTCCCACCAAG 60.609 60.000 17.79 6.34 45.13 3.61
525 531 1.356494 TGACACATGGGTCCCACCAA 61.356 55.000 25.06 2.26 45.13 3.67
526 532 1.772156 TGACACATGGGTCCCACCA 60.772 57.895 25.06 3.80 46.24 4.17
527 533 1.002134 CTGACACATGGGTCCCACC 60.002 63.158 25.06 0.76 35.80 4.61
528 534 0.606401 CACTGACACATGGGTCCCAC 60.606 60.000 25.06 1.17 35.80 4.61
529 535 1.059584 ACACTGACACATGGGTCCCA 61.060 55.000 25.06 14.64 36.97 4.37
530 536 0.321653 GACACTGACACATGGGTCCC 60.322 60.000 25.06 0.00 36.97 4.46
531 537 0.687354 AGACACTGACACATGGGTCC 59.313 55.000 25.06 9.33 36.97 4.46
532 538 1.344438 TGAGACACTGACACATGGGTC 59.656 52.381 21.62 21.62 38.29 4.46
533 539 1.423584 TGAGACACTGACACATGGGT 58.576 50.000 0.00 0.00 0.00 4.51
534 540 2.549064 TTGAGACACTGACACATGGG 57.451 50.000 0.00 0.00 0.00 4.00
535 541 3.405831 ACATTGAGACACTGACACATGG 58.594 45.455 0.00 0.00 0.00 3.66
536 542 4.313282 AGACATTGAGACACTGACACATG 58.687 43.478 0.00 0.00 0.00 3.21
537 543 4.039609 TGAGACATTGAGACACTGACACAT 59.960 41.667 0.00 0.00 0.00 3.21
538 544 3.384467 TGAGACATTGAGACACTGACACA 59.616 43.478 0.00 0.00 0.00 3.72
539 545 3.982475 TGAGACATTGAGACACTGACAC 58.018 45.455 0.00 0.00 0.00 3.67
540 546 4.670896 TTGAGACATTGAGACACTGACA 57.329 40.909 0.00 0.00 0.00 3.58
541 547 4.391216 CCATTGAGACATTGAGACACTGAC 59.609 45.833 0.00 0.00 0.00 3.51
542 548 4.572909 CCATTGAGACATTGAGACACTGA 58.427 43.478 0.00 0.00 0.00 3.41
543 549 3.126514 GCCATTGAGACATTGAGACACTG 59.873 47.826 0.00 0.00 0.00 3.66
544 550 3.244665 TGCCATTGAGACATTGAGACACT 60.245 43.478 0.00 0.00 0.00 3.55
545 551 3.076621 TGCCATTGAGACATTGAGACAC 58.923 45.455 0.00 0.00 0.00 3.67
546 552 3.008266 TCTGCCATTGAGACATTGAGACA 59.992 43.478 0.00 0.00 0.00 3.41
547 553 3.603532 TCTGCCATTGAGACATTGAGAC 58.396 45.455 0.00 0.00 0.00 3.36
548 554 3.986996 TCTGCCATTGAGACATTGAGA 57.013 42.857 0.00 0.00 0.00 3.27
549 555 5.277876 GCTAATCTGCCATTGAGACATTGAG 60.278 44.000 0.00 0.00 0.00 3.02
550 556 4.577693 GCTAATCTGCCATTGAGACATTGA 59.422 41.667 0.00 0.00 0.00 2.57
551 557 4.856664 GCTAATCTGCCATTGAGACATTG 58.143 43.478 0.00 0.00 0.00 2.82
564 570 2.019984 CCCTGACTTTGGCTAATCTGC 58.980 52.381 0.00 0.00 0.00 4.26
565 571 2.239654 TCCCCTGACTTTGGCTAATCTG 59.760 50.000 0.00 0.00 0.00 2.90
566 572 2.562296 TCCCCTGACTTTGGCTAATCT 58.438 47.619 0.00 0.00 0.00 2.40
567 573 3.481453 GATCCCCTGACTTTGGCTAATC 58.519 50.000 0.00 0.00 0.00 1.75
568 574 2.175715 GGATCCCCTGACTTTGGCTAAT 59.824 50.000 0.00 0.00 0.00 1.73
569 575 1.564348 GGATCCCCTGACTTTGGCTAA 59.436 52.381 0.00 0.00 0.00 3.09
570 576 1.213296 GGATCCCCTGACTTTGGCTA 58.787 55.000 0.00 0.00 0.00 3.93
571 577 0.551131 AGGATCCCCTGACTTTGGCT 60.551 55.000 8.55 0.00 42.42 4.75
572 578 0.106967 GAGGATCCCCTGACTTTGGC 60.107 60.000 8.55 0.00 44.53 4.52
573 579 0.179000 CGAGGATCCCCTGACTTTGG 59.821 60.000 8.55 0.00 44.53 3.28
574 580 0.905357 ACGAGGATCCCCTGACTTTG 59.095 55.000 8.55 0.00 44.53 2.77
575 581 1.196012 GACGAGGATCCCCTGACTTT 58.804 55.000 8.55 0.00 44.53 2.66
576 582 0.688087 GGACGAGGATCCCCTGACTT 60.688 60.000 8.55 0.00 44.53 3.01
577 583 1.075896 GGACGAGGATCCCCTGACT 60.076 63.158 8.55 0.00 44.53 3.41
578 584 0.185416 TAGGACGAGGATCCCCTGAC 59.815 60.000 15.52 3.97 44.53 3.51
579 585 0.478942 CTAGGACGAGGATCCCCTGA 59.521 60.000 15.52 2.13 44.53 3.86
580 586 0.478942 TCTAGGACGAGGATCCCCTG 59.521 60.000 15.52 5.84 44.53 4.45
582 588 3.039452 GTCTAGGACGAGGATCCCC 57.961 63.158 8.55 1.84 39.91 4.81
592 598 1.516423 GGTGGGCTTCGTCTAGGAC 59.484 63.158 0.00 0.00 0.00 3.85
593 599 1.684734 GGGTGGGCTTCGTCTAGGA 60.685 63.158 0.00 0.00 0.00 2.94
594 600 1.550130 TTGGGTGGGCTTCGTCTAGG 61.550 60.000 0.00 0.00 0.00 3.02
600 606 0.249280 GTTTGTTTGGGTGGGCTTCG 60.249 55.000 0.00 0.00 0.00 3.79
619 625 1.453379 TAGCCCTCGGAGGTCTTCG 60.453 63.158 22.07 7.98 31.93 3.79
636 642 0.988145 CAGGGGGATCTTGCAGGGTA 60.988 60.000 0.00 0.00 0.00 3.69
653 659 4.785453 GCCGGAGTCCAAGGGCAG 62.785 72.222 18.72 0.00 44.91 4.85
797 803 1.536662 AAGGCGAGGTGGAAGAGGT 60.537 57.895 0.00 0.00 0.00 3.85
843 849 2.202987 GGTGGATCTGGAGCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
845 851 1.809271 CGATTGGTGGATCTGGAGCAG 60.809 57.143 0.00 0.00 0.00 4.24
867 873 2.743928 GGGCGCAACTCCTGACTG 60.744 66.667 10.83 0.00 0.00 3.51
897 909 1.944024 CTAATCAGAGAGAGCGACGGT 59.056 52.381 0.00 0.00 0.00 4.83
917 932 3.895232 TCACTAGAACCCAGATGAAGC 57.105 47.619 0.00 0.00 0.00 3.86
972 987 1.980052 CAGGACGAAACCCTGCCTA 59.020 57.895 0.00 0.00 43.93 3.93
1086 1101 4.127171 GTGTAAACAAGGAGAACTGAGCA 58.873 43.478 0.00 0.00 0.00 4.26
1208 1230 2.154462 ACTGCAGCACCATCAGTAAAC 58.846 47.619 15.27 0.00 39.08 2.01
1217 1239 0.746063 CAAAGGAAACTGCAGCACCA 59.254 50.000 15.27 0.00 42.68 4.17
1392 1423 6.858478 GTGAAAACTGCTAATTCTTGGTTCTC 59.142 38.462 0.00 0.00 0.00 2.87
1415 1446 3.071874 TGAAAGCCCATAGAACCTGTG 57.928 47.619 0.00 0.00 0.00 3.66
1425 1459 2.154567 AGCACATGATGAAAGCCCAT 57.845 45.000 0.00 0.00 0.00 4.00
1436 1483 2.628696 CCGCCTTGCAAGCACATGA 61.629 57.895 21.43 0.00 0.00 3.07
1461 1508 0.457853 GAGATGCGCGTCAACACCTA 60.458 55.000 30.02 0.00 0.00 3.08
1472 1519 0.460987 ACTAACAGGCTGAGATGCGC 60.461 55.000 23.66 0.00 0.00 6.09
1486 1533 4.774586 CTGTGATCCGATCGAGTACTAAC 58.225 47.826 18.66 6.03 0.00 2.34
1617 1668 2.312390 GCACCAACTTAGTTTTCCCCA 58.688 47.619 0.00 0.00 0.00 4.96
1739 1792 6.199908 GCATAAAACAAACATGCAGTACAACA 59.800 34.615 0.00 0.00 43.59 3.33
1804 1857 2.557924 CCAGCACCAGCACAAGAATTTA 59.442 45.455 0.00 0.00 45.49 1.40
1823 1876 4.916041 ATCCAAACTTCATGAGAGACCA 57.084 40.909 10.61 0.00 0.00 4.02
2094 2148 2.749621 AGGATCACAAATTCGAACAGGC 59.250 45.455 0.00 0.00 0.00 4.85
2168 2222 5.892160 AAATTAACCTTTTCCGGCTCTAC 57.108 39.130 0.00 0.00 0.00 2.59
2185 2239 8.845227 TGATAGAAAGCGCATGGAAATAAATTA 58.155 29.630 11.47 0.00 0.00 1.40
2912 2977 2.314549 CTCTCCCTAGATCTGCCCCTAT 59.685 54.545 5.18 0.00 0.00 2.57
3002 3067 3.521452 AGCCACCCTGCCCCTTTT 61.521 61.111 0.00 0.00 0.00 2.27
3059 3147 1.300620 TGCACCTTGAGTCGTTCGG 60.301 57.895 0.00 0.00 0.00 4.30
3230 3328 4.098722 GAGCTCAGCCCTGCAGCT 62.099 66.667 8.66 16.58 46.45 4.24
3231 3329 4.098722 AGAGCTCAGCCCTGCAGC 62.099 66.667 17.77 0.00 35.48 5.25
3232 3330 2.125065 CAGAGCTCAGCCCTGCAG 60.125 66.667 17.77 6.78 0.00 4.41
3320 3419 7.172342 AGCACCATTGTTAGGTTATTCAGTTA 58.828 34.615 0.00 0.00 37.23 2.24
3321 3420 6.010219 AGCACCATTGTTAGGTTATTCAGTT 58.990 36.000 0.00 0.00 37.23 3.16
3322 3421 5.570320 AGCACCATTGTTAGGTTATTCAGT 58.430 37.500 0.00 0.00 37.23 3.41
3323 3422 6.515272 AAGCACCATTGTTAGGTTATTCAG 57.485 37.500 0.00 0.00 37.23 3.02
3393 3579 7.132213 CAGGAACATATTAAATCGCGTGAATT 58.868 34.615 5.77 3.10 0.00 2.17
3401 3587 7.910162 CCAGACAAACAGGAACATATTAAATCG 59.090 37.037 0.00 0.00 0.00 3.34
3631 3817 7.293745 CACTCTTTAAGTTGACAACTGCATAG 58.706 38.462 21.24 16.01 41.91 2.23
3637 3823 4.941263 TGTGCACTCTTTAAGTTGACAACT 59.059 37.500 19.41 15.23 45.46 3.16
3684 4176 7.885297 TGCAAGTCAAGTATTTCTAGCAAAAT 58.115 30.769 0.00 0.00 33.54 1.82
3719 4211 6.413818 GTGTTAGCTGTGAAAACAACATACAC 59.586 38.462 0.00 0.00 35.08 2.90
3808 4300 1.187087 CCCTACGAGAAAGCTGACCT 58.813 55.000 0.00 0.00 0.00 3.85
4324 4816 4.081972 TCTCCTTCAACACTCATAGCAGTC 60.082 45.833 0.00 0.00 0.00 3.51
4552 5044 4.440880 CCAAGTCATCATCAGACTCTTCC 58.559 47.826 0.00 0.00 45.11 3.46
4690 5182 4.033932 TCTGTAACATCGAAATTGCCATCG 59.966 41.667 0.00 0.00 40.31 3.84
4879 5371 1.952367 GCCTCTGCAACATTACCAGCT 60.952 52.381 0.00 0.00 37.47 4.24
5104 5596 3.245407 CCACCTTTCCTTCCCTTCTCAAT 60.245 47.826 0.00 0.00 0.00 2.57
5199 5691 0.685458 TTCCCTGGCTACGGGTCTAC 60.685 60.000 6.91 0.00 41.93 2.59
5248 5740 2.771943 CAGACTAGGGGGTTCAGCATTA 59.228 50.000 0.00 0.00 0.00 1.90
5276 5768 3.776969 TCAGGTTCATAGCCTTCATCAGT 59.223 43.478 0.00 0.00 33.31 3.41
5398 5890 0.652592 CAGGTGAACGATTCGATGGC 59.347 55.000 13.95 0.41 0.00 4.40
5587 6079 6.044682 ACCTTTTTGAGAAGCAGTTGAATTG 58.955 36.000 0.00 0.00 0.00 2.32
5590 6082 5.184864 TGAACCTTTTTGAGAAGCAGTTGAA 59.815 36.000 0.00 0.00 0.00 2.69
5655 6147 4.286297 TGAACATTAGGGACCTGTTGAG 57.714 45.455 0.00 0.00 33.46 3.02
5662 6154 4.130118 CAGTAGCATGAACATTAGGGACC 58.870 47.826 0.00 0.00 0.00 4.46
5762 6254 2.104170 GCTCCCAGAACTAGCTACAGT 58.896 52.381 0.00 0.00 33.40 3.55
5779 6271 3.843999 TGTTTCAGTTTGTGGTTTGCTC 58.156 40.909 0.00 0.00 0.00 4.26
5820 6312 3.795623 ATGCTCCATCACTTGATTTGC 57.204 42.857 0.00 0.00 31.21 3.68
6055 6556 1.021920 GGGCTTCAAGACGCTTCTCC 61.022 60.000 0.00 0.00 0.00 3.71
6159 6660 2.520741 GGTTGGTGTGGGTGGTGG 60.521 66.667 0.00 0.00 0.00 4.61
6886 7409 1.403814 TGAAAACAATCGTTGCCCCA 58.596 45.000 0.00 0.00 34.86 4.96
6893 7420 5.299279 ACTTTGGAGTCATGAAAACAATCGT 59.701 36.000 0.00 1.42 0.00 3.73
7017 7558 5.813672 TGATTCTACTATTGTTTGTACGGCC 59.186 40.000 0.00 0.00 0.00 6.13
7018 7559 6.897259 TGATTCTACTATTGTTTGTACGGC 57.103 37.500 0.00 0.00 0.00 5.68
7038 7579 0.523968 GCGCACGCACAAATGATGAT 60.524 50.000 10.65 0.00 41.49 2.45
7039 7580 1.154244 GCGCACGCACAAATGATGA 60.154 52.632 10.65 0.00 41.49 2.92
7040 7581 3.365955 GCGCACGCACAAATGATG 58.634 55.556 10.65 0.00 41.49 3.07
7069 7610 3.994392 GCCTTTCTACACTCGATGTTGAA 59.006 43.478 15.18 15.18 46.84 2.69
7080 7621 3.895232 TCCTCATCAGCCTTTCTACAC 57.105 47.619 0.00 0.00 0.00 2.90
7107 7648 5.221422 TGCCCTCAAAACCTTCAAACTTATG 60.221 40.000 0.00 0.00 0.00 1.90
7109 7650 4.282496 TGCCCTCAAAACCTTCAAACTTA 58.718 39.130 0.00 0.00 0.00 2.24
7112 7653 3.181466 ACATGCCCTCAAAACCTTCAAAC 60.181 43.478 0.00 0.00 0.00 2.93
7113 7655 3.037549 ACATGCCCTCAAAACCTTCAAA 58.962 40.909 0.00 0.00 0.00 2.69
7120 7662 1.974543 CCCCACATGCCCTCAAAAC 59.025 57.895 0.00 0.00 0.00 2.43
7122 7664 2.283821 GCCCCACATGCCCTCAAA 60.284 61.111 0.00 0.00 0.00 2.69
7165 7707 3.435601 CCACAAGATATTAGCAAGGGCCT 60.436 47.826 0.00 0.00 42.56 5.19
7172 7714 6.662755 ACTTGGAATCCACAAGATATTAGCA 58.337 36.000 0.00 0.00 46.27 3.49
7173 7715 7.934120 AGTACTTGGAATCCACAAGATATTAGC 59.066 37.037 0.00 0.00 46.27 3.09
7174 7716 9.482627 GAGTACTTGGAATCCACAAGATATTAG 57.517 37.037 0.00 0.00 46.27 1.73
7175 7717 8.429641 GGAGTACTTGGAATCCACAAGATATTA 58.570 37.037 0.00 0.00 46.27 0.98
7184 8213 2.170817 GGAGGGAGTACTTGGAATCCAC 59.829 54.545 0.00 0.00 30.78 4.02
7190 8219 1.411216 GGATCGGAGGGAGTACTTGGA 60.411 57.143 0.00 0.00 0.00 3.53
7192 8221 1.776662 TGGATCGGAGGGAGTACTTG 58.223 55.000 0.00 0.00 0.00 3.16
7200 8229 5.565439 GCATCAATTATTTTGGATCGGAGGG 60.565 44.000 0.00 0.00 0.00 4.30
7201 8230 5.009911 TGCATCAATTATTTTGGATCGGAGG 59.990 40.000 0.00 0.00 0.00 4.30
7202 8231 6.075762 TGCATCAATTATTTTGGATCGGAG 57.924 37.500 0.00 0.00 0.00 4.63
7203 8232 6.272318 GTTGCATCAATTATTTTGGATCGGA 58.728 36.000 0.00 0.00 0.00 4.55
7204 8233 5.463061 GGTTGCATCAATTATTTTGGATCGG 59.537 40.000 0.00 0.00 0.00 4.18
7205 8234 6.275335 AGGTTGCATCAATTATTTTGGATCG 58.725 36.000 0.00 0.00 0.00 3.69
7206 8235 7.495055 AGAGGTTGCATCAATTATTTTGGATC 58.505 34.615 0.00 0.00 0.00 3.36
7207 8236 7.427989 AGAGGTTGCATCAATTATTTTGGAT 57.572 32.000 0.00 0.00 0.00 3.41
7209 8238 9.683069 GTATAGAGGTTGCATCAATTATTTTGG 57.317 33.333 0.00 0.00 0.00 3.28
7215 8244 8.978874 ACATTGTATAGAGGTTGCATCAATTA 57.021 30.769 0.00 0.00 0.00 1.40
7217 8246 7.340232 ACAACATTGTATAGAGGTTGCATCAAT 59.660 33.333 13.15 0.00 41.80 2.57
7220 8249 6.683974 ACAACATTGTATAGAGGTTGCATC 57.316 37.500 13.15 0.00 41.80 3.91
7235 8264 6.932356 AATGGCAGTCTCTATACAACATTG 57.068 37.500 0.00 0.00 0.00 2.82
7236 8265 9.632638 ATTAAATGGCAGTCTCTATACAACATT 57.367 29.630 0.00 0.00 0.00 2.71
7237 8266 9.632638 AATTAAATGGCAGTCTCTATACAACAT 57.367 29.630 0.00 0.00 0.00 2.71
7238 8267 9.461312 AAATTAAATGGCAGTCTCTATACAACA 57.539 29.630 0.00 0.00 0.00 3.33
7239 8268 9.722056 CAAATTAAATGGCAGTCTCTATACAAC 57.278 33.333 0.00 0.00 0.00 3.32
7240 8269 8.902806 CCAAATTAAATGGCAGTCTCTATACAA 58.097 33.333 0.00 0.00 0.00 2.41
7242 8271 8.677148 TCCAAATTAAATGGCAGTCTCTATAC 57.323 34.615 5.91 0.00 37.88 1.47
7247 8276 5.506317 CCGATCCAAATTAAATGGCAGTCTC 60.506 44.000 5.91 0.00 37.88 3.36
7249 8278 4.338118 TCCGATCCAAATTAAATGGCAGTC 59.662 41.667 5.91 4.17 37.88 3.51
7250 8279 4.277476 TCCGATCCAAATTAAATGGCAGT 58.723 39.130 5.91 0.00 37.88 4.40
7251 8280 4.261741 CCTCCGATCCAAATTAAATGGCAG 60.262 45.833 5.91 1.27 37.88 4.85
7252 8281 3.636300 CCTCCGATCCAAATTAAATGGCA 59.364 43.478 5.91 0.00 37.88 4.92
7253 8282 3.005791 CCCTCCGATCCAAATTAAATGGC 59.994 47.826 5.91 0.00 37.88 4.40
7254 8283 4.469657 TCCCTCCGATCCAAATTAAATGG 58.530 43.478 4.64 4.64 39.41 3.16
7255 8284 5.009010 CACTCCCTCCGATCCAAATTAAATG 59.991 44.000 0.00 0.00 0.00 2.32
7256 8285 5.133221 CACTCCCTCCGATCCAAATTAAAT 58.867 41.667 0.00 0.00 0.00 1.40
7257 8286 4.523083 CACTCCCTCCGATCCAAATTAAA 58.477 43.478 0.00 0.00 0.00 1.52
7258 8287 3.118038 CCACTCCCTCCGATCCAAATTAA 60.118 47.826 0.00 0.00 0.00 1.40
7259 8288 2.438021 CCACTCCCTCCGATCCAAATTA 59.562 50.000 0.00 0.00 0.00 1.40
7260 8289 1.212935 CCACTCCCTCCGATCCAAATT 59.787 52.381 0.00 0.00 0.00 1.82
7261 8290 0.839946 CCACTCCCTCCGATCCAAAT 59.160 55.000 0.00 0.00 0.00 2.32
7262 8291 1.910580 GCCACTCCCTCCGATCCAAA 61.911 60.000 0.00 0.00 0.00 3.28
7264 8293 2.764128 GCCACTCCCTCCGATCCA 60.764 66.667 0.00 0.00 0.00 3.41
7268 8358 1.415672 AAACAAGCCACTCCCTCCGA 61.416 55.000 0.00 0.00 0.00 4.55
7279 8369 4.633565 TGGAAATCAAACAACAAACAAGCC 59.366 37.500 0.00 0.00 0.00 4.35
7365 8458 4.038763 TCCTGATAACTACGTAAGCATGGG 59.961 45.833 0.00 0.00 45.62 4.00
7393 8486 8.938883 ACACAAACATCCTATCCTAGTAATCAT 58.061 33.333 0.00 0.00 0.00 2.45
7395 8488 9.614792 AAACACAAACATCCTATCCTAGTAATC 57.385 33.333 0.00 0.00 0.00 1.75
7397 8490 9.444600 GAAAACACAAACATCCTATCCTAGTAA 57.555 33.333 0.00 0.00 0.00 2.24
7401 8494 5.878116 CCGAAAACACAAACATCCTATCCTA 59.122 40.000 0.00 0.00 0.00 2.94
7402 8495 4.700213 CCGAAAACACAAACATCCTATCCT 59.300 41.667 0.00 0.00 0.00 3.24
7403 8496 4.457949 ACCGAAAACACAAACATCCTATCC 59.542 41.667 0.00 0.00 0.00 2.59
7404 8497 5.622770 ACCGAAAACACAAACATCCTATC 57.377 39.130 0.00 0.00 0.00 2.08
7405 8498 6.148811 CAGTACCGAAAACACAAACATCCTAT 59.851 38.462 0.00 0.00 0.00 2.57
7406 8499 5.467399 CAGTACCGAAAACACAAACATCCTA 59.533 40.000 0.00 0.00 0.00 2.94
7407 8500 4.274950 CAGTACCGAAAACACAAACATCCT 59.725 41.667 0.00 0.00 0.00 3.24
7408 8501 4.533222 CAGTACCGAAAACACAAACATCC 58.467 43.478 0.00 0.00 0.00 3.51
7409 8502 3.972502 GCAGTACCGAAAACACAAACATC 59.027 43.478 0.00 0.00 0.00 3.06
7410 8503 3.378742 TGCAGTACCGAAAACACAAACAT 59.621 39.130 0.00 0.00 0.00 2.71
7411 8504 2.747989 TGCAGTACCGAAAACACAAACA 59.252 40.909 0.00 0.00 0.00 2.83
7416 8509 1.191647 CGACTGCAGTACCGAAAACAC 59.808 52.381 21.73 1.75 0.00 3.32
7428 8521 2.030562 AAACCCGACCGACTGCAG 59.969 61.111 13.48 13.48 0.00 4.41
7431 8524 0.531090 TGAACAAACCCGACCGACTG 60.531 55.000 0.00 0.00 0.00 3.51
7436 8529 0.039527 GCACATGAACAAACCCGACC 60.040 55.000 0.00 0.00 0.00 4.79
7437 8530 0.039527 GGCACATGAACAAACCCGAC 60.040 55.000 0.00 0.00 0.00 4.79
7438 8531 0.179004 AGGCACATGAACAAACCCGA 60.179 50.000 0.00 0.00 0.00 5.14
7439 8532 0.673437 AAGGCACATGAACAAACCCG 59.327 50.000 0.00 0.00 0.00 5.28
7450 8543 0.675633 GCAGTCCAAACAAGGCACAT 59.324 50.000 0.00 0.00 0.00 3.21
7457 8550 1.824230 ACAAGCAAGCAGTCCAAACAA 59.176 42.857 0.00 0.00 0.00 2.83
7482 8575 6.956047 AGAATCCAACGTCTAAAACAGTTTC 58.044 36.000 0.00 0.00 0.00 2.78
7486 8579 4.684703 ACGAGAATCCAACGTCTAAAACAG 59.315 41.667 0.00 0.00 35.33 3.16
7488 8581 4.143179 CCACGAGAATCCAACGTCTAAAAC 60.143 45.833 0.00 0.00 38.18 2.43
7490 8583 3.256383 TCCACGAGAATCCAACGTCTAAA 59.744 43.478 0.00 0.00 38.18 1.85
7493 8586 1.254026 TCCACGAGAATCCAACGTCT 58.746 50.000 0.00 0.00 38.18 4.18
7494 8587 1.927174 CATCCACGAGAATCCAACGTC 59.073 52.381 0.00 0.00 38.18 4.34
7496 8589 2.159240 TCTCATCCACGAGAATCCAACG 60.159 50.000 0.00 0.00 39.09 4.10
7497 8590 3.190874 GTCTCATCCACGAGAATCCAAC 58.809 50.000 0.00 0.00 43.51 3.77
7503 8624 1.668919 GCAACGTCTCATCCACGAGAA 60.669 52.381 0.00 0.00 43.51 2.87
7508 8629 1.728971 CAGAAGCAACGTCTCATCCAC 59.271 52.381 0.00 0.00 0.00 4.02
7518 8639 2.609459 AGACAGACAAACAGAAGCAACG 59.391 45.455 0.00 0.00 0.00 4.10
7526 8647 4.201940 TGCATCAAACAGACAGACAAACAG 60.202 41.667 0.00 0.00 0.00 3.16
7555 8676 1.140312 GGACCCAGGATTGCAGGATA 58.860 55.000 0.00 0.00 0.00 2.59
7597 8723 5.354513 GGCAGTTATTTTCTCCACCTAAGTC 59.645 44.000 0.00 0.00 0.00 3.01
7598 8724 5.222048 TGGCAGTTATTTTCTCCACCTAAGT 60.222 40.000 0.00 0.00 0.00 2.24
7602 8728 3.806949 TGGCAGTTATTTTCTCCACCT 57.193 42.857 0.00 0.00 0.00 4.00
7618 8744 6.239176 CCCTTTTGTTTCTGTTTACTATGGCA 60.239 38.462 0.00 0.00 0.00 4.92
7632 8758 1.810031 GCACCAAGGCCCTTTTGTTTC 60.810 52.381 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.