Multiple sequence alignment - TraesCS5B01G484400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G484400 chr5B 100.000 5758 0 0 1 5758 656045465 656051222 0.000000e+00 10634.0
1 TraesCS5B01G484400 chr5B 88.596 342 33 4 943 1282 656040742 656041079 1.490000e-110 411.0
2 TraesCS5B01G484400 chr5B 92.222 90 5 2 113 200 656036914 656037003 6.060000e-25 126.0
3 TraesCS5B01G484400 chr5B 82.759 145 18 4 305 449 656037308 656037445 7.840000e-24 122.0
4 TraesCS5B01G484400 chr5B 81.522 92 13 4 944 1032 566069813 566069903 8.000000e-09 73.1
5 TraesCS5B01G484400 chr5D 95.482 3453 101 7 1302 4727 520650919 520654343 0.000000e+00 5461.0
6 TraesCS5B01G484400 chr5D 85.597 972 96 21 4765 5728 520654648 520655583 0.000000e+00 979.0
7 TraesCS5B01G484400 chr5D 85.845 657 51 14 1420 2049 520639826 520640467 0.000000e+00 660.0
8 TraesCS5B01G484400 chr5D 90.591 457 29 7 63 516 520648753 520649198 1.380000e-165 593.0
9 TraesCS5B01G484400 chr5D 88.047 343 34 5 943 1282 520639431 520639769 3.230000e-107 399.0
10 TraesCS5B01G484400 chr5D 87.833 263 26 3 596 853 520650675 520650936 2.610000e-78 303.0
11 TraesCS5B01G484400 chr5D 96.512 86 2 1 113 197 520636548 520636633 2.160000e-29 141.0
12 TraesCS5B01G484400 chr5D 86.538 104 7 3 349 449 520637216 520637315 2.190000e-19 108.0
13 TraesCS5B01G484400 chr5A 93.753 3634 167 23 1420 5006 648855009 648858629 0.000000e+00 5398.0
14 TraesCS5B01G484400 chr5A 87.185 874 78 22 4859 5720 648859008 648859859 0.000000e+00 963.0
15 TraesCS5B01G484400 chr5A 88.309 479 34 11 63 533 648851617 648852081 6.520000e-154 555.0
16 TraesCS5B01G484400 chr5A 86.804 341 41 4 943 1282 648790609 648790946 1.510000e-100 377.0
17 TraesCS5B01G484400 chr5A 86.111 288 36 4 569 853 648854240 648854526 2.020000e-79 307.0
18 TraesCS5B01G484400 chr5A 78.523 298 18 26 113 369 648787841 648788133 2.780000e-33 154.0
19 TraesCS5B01G484400 chr5A 100.000 51 0 0 1302 1352 648854508 648854558 1.710000e-15 95.3
20 TraesCS5B01G484400 chr7D 86.228 167 20 1 3190 3356 262577102 262576939 1.650000e-40 178.0
21 TraesCS5B01G484400 chr7D 79.545 176 21 9 5570 5731 175610667 175610493 1.700000e-20 111.0
22 TraesCS5B01G484400 chr7D 100.000 28 0 0 858 885 165884626 165884653 1.000000e-02 52.8
23 TraesCS5B01G484400 chr3D 73.333 555 101 37 5218 5758 571812551 571813072 1.660000e-35 161.0
24 TraesCS5B01G484400 chr3D 77.368 190 34 9 5549 5732 612294431 612294245 2.840000e-18 104.0
25 TraesCS5B01G484400 chr3D 97.059 34 1 0 852 885 605638251 605638284 2.240000e-04 58.4
26 TraesCS5B01G484400 chr1D 94.286 105 6 0 4197 4301 468374589 468374693 1.660000e-35 161.0
27 TraesCS5B01G484400 chr1D 76.077 209 28 16 5559 5747 383725227 383725433 7.950000e-14 89.8
28 TraesCS5B01G484400 chr1D 93.023 43 3 0 5397 5439 462269614 462269572 4.820000e-06 63.9
29 TraesCS5B01G484400 chr1D 94.286 35 2 0 858 892 447368301 447368335 3.000000e-03 54.7
30 TraesCS5B01G484400 chr2B 94.000 100 6 0 3339 3438 789128477 789128378 9.990000e-33 152.0
31 TraesCS5B01G484400 chr7A 92.553 94 7 0 4208 4301 671699513 671699420 1.010000e-27 135.0
32 TraesCS5B01G484400 chr7A 82.482 137 15 7 5608 5736 63385373 63385508 1.700000e-20 111.0
33 TraesCS5B01G484400 chr7A 94.286 35 2 0 852 886 696635858 696635892 3.000000e-03 54.7
34 TraesCS5B01G484400 chr2A 82.400 125 16 4 5611 5732 524863627 524863506 2.840000e-18 104.0
35 TraesCS5B01G484400 chr2A 79.487 156 19 12 5385 5532 759175730 759175880 1.320000e-16 99.0
36 TraesCS5B01G484400 chr2A 94.444 36 2 0 852 887 658470307 658470342 8.060000e-04 56.5
37 TraesCS5B01G484400 chr2A 94.286 35 2 0 852 886 735976657 735976691 3.000000e-03 54.7
38 TraesCS5B01G484400 chrUn 91.667 72 6 0 4230 4301 23722077 23722006 3.670000e-17 100.0
39 TraesCS5B01G484400 chrUn 94.000 50 1 1 3369 3416 83023730 83023779 2.230000e-09 75.0
40 TraesCS5B01G484400 chr7B 80.916 131 17 5 5609 5732 71134505 71134376 4.750000e-16 97.1
41 TraesCS5B01G484400 chr7B 93.220 59 4 0 3271 3329 43206618 43206560 2.860000e-13 87.9
42 TraesCS5B01G484400 chr6D 94.915 59 3 0 3271 3329 205119221 205119279 6.140000e-15 93.5
43 TraesCS5B01G484400 chr6D 92.105 38 3 0 852 889 433278786 433278823 3.000000e-03 54.7
44 TraesCS5B01G484400 chr1A 76.351 148 32 3 5386 5532 532473226 532473371 6.190000e-10 76.8
45 TraesCS5B01G484400 chr1A 95.238 42 2 0 3372 3413 569372776 569372735 3.720000e-07 67.6
46 TraesCS5B01G484400 chr1B 95.556 45 2 0 3369 3413 631257163 631257207 8.000000e-09 73.1
47 TraesCS5B01G484400 chr6B 90.385 52 5 0 3278 3329 720008501 720008552 1.040000e-07 69.4
48 TraesCS5B01G484400 chr3A 92.105 38 3 0 858 895 513933704 513933667 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G484400 chr5B 656045465 656051222 5757 False 10634.000000 10634 100.00000 1 5758 1 chr5B.!!$F2 5757
1 TraesCS5B01G484400 chr5B 656036914 656041079 4165 False 219.666667 411 87.85900 113 1282 3 chr5B.!!$F3 1169
2 TraesCS5B01G484400 chr5D 520648753 520655583 6830 False 1834.000000 5461 89.87575 63 5728 4 chr5D.!!$F2 5665
3 TraesCS5B01G484400 chr5D 520636548 520640467 3919 False 327.000000 660 89.23550 113 2049 4 chr5D.!!$F1 1936
4 TraesCS5B01G484400 chr5A 648851617 648859859 8242 False 1463.660000 5398 91.07160 63 5720 5 chr5A.!!$F2 5657
5 TraesCS5B01G484400 chr5A 648787841 648790946 3105 False 265.500000 377 82.66350 113 1282 2 chr5A.!!$F1 1169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 5409 0.036306 TTCCTTTTCCTCTCCACGCC 59.964 55.0 0.00 0.0 0.00 5.68 F
879 5476 0.324943 CCTTGCGAGAGGGGAAAGAA 59.675 55.0 1.22 0.0 32.94 2.52 F
1446 8667 0.612229 ACACAGCTCCATGTCTCCTG 59.388 55.0 0.00 0.0 0.00 3.86 F
2394 9658 0.908910 TGGTGGACAAGATGCCGTAT 59.091 50.0 0.00 0.0 0.00 3.06 F
3237 10501 0.317103 CGTCCGACGAAGCTATGAGG 60.317 60.0 16.03 0.0 46.05 3.86 F
4322 11586 1.074319 TTTGACACGATACCGAGCGC 61.074 55.0 0.00 0.0 38.26 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2089 9353 0.034616 GCTCCTTGTGCTGTCTCTGT 59.965 55.0 0.00 0.00 0.00 3.41 R
2200 9464 0.103208 ACCGCTTCCGAGCTCATTAG 59.897 55.0 15.40 7.99 46.96 1.73 R
3237 10501 0.958876 CCGCCCTGTTACCCACTTTC 60.959 60.0 0.00 0.00 0.00 2.62 R
3962 11226 0.941463 GTCTAGCATCCACATCGCCG 60.941 60.0 0.00 0.00 0.00 6.46 R
4675 11959 0.947244 CAACTGGAACTGCAGTCCAC 59.053 55.0 25.10 17.27 0.00 4.02 R
5286 13375 0.455633 CACAGGAAATGCGCTTCAGC 60.456 55.0 9.73 0.00 37.78 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.465632 TGACGCTGGATTACAATACTGT 57.534 40.909 0.00 0.00 39.75 3.55
22 23 4.827692 TGACGCTGGATTACAATACTGTT 58.172 39.130 0.00 0.00 36.96 3.16
23 24 4.868171 TGACGCTGGATTACAATACTGTTC 59.132 41.667 0.00 0.00 36.96 3.18
24 25 5.086104 ACGCTGGATTACAATACTGTTCT 57.914 39.130 0.00 0.00 36.96 3.01
25 26 5.488341 ACGCTGGATTACAATACTGTTCTT 58.512 37.500 0.00 0.00 36.96 2.52
26 27 5.581085 ACGCTGGATTACAATACTGTTCTTC 59.419 40.000 0.00 0.00 36.96 2.87
27 28 5.006746 CGCTGGATTACAATACTGTTCTTCC 59.993 44.000 0.00 0.00 36.96 3.46
28 29 5.297029 GCTGGATTACAATACTGTTCTTCCC 59.703 44.000 0.00 0.00 36.96 3.97
29 30 6.636454 TGGATTACAATACTGTTCTTCCCT 57.364 37.500 0.00 0.00 36.96 4.20
30 31 6.414732 TGGATTACAATACTGTTCTTCCCTG 58.585 40.000 0.00 0.00 36.96 4.45
31 32 6.214615 TGGATTACAATACTGTTCTTCCCTGA 59.785 38.462 0.00 0.00 36.96 3.86
32 33 6.763610 GGATTACAATACTGTTCTTCCCTGAG 59.236 42.308 0.00 0.00 36.96 3.35
33 34 6.928348 TTACAATACTGTTCTTCCCTGAGA 57.072 37.500 0.00 0.00 36.96 3.27
34 35 5.413309 ACAATACTGTTCTTCCCTGAGAG 57.587 43.478 0.00 0.00 28.57 3.20
35 36 5.087323 ACAATACTGTTCTTCCCTGAGAGA 58.913 41.667 0.00 0.00 28.57 3.10
36 37 5.723887 ACAATACTGTTCTTCCCTGAGAGAT 59.276 40.000 0.00 0.00 28.57 2.75
37 38 6.897966 ACAATACTGTTCTTCCCTGAGAGATA 59.102 38.462 0.00 0.00 28.57 1.98
38 39 6.969993 ATACTGTTCTTCCCTGAGAGATAC 57.030 41.667 0.00 0.00 0.00 2.24
39 40 4.027437 ACTGTTCTTCCCTGAGAGATACC 58.973 47.826 0.00 0.00 0.00 2.73
40 41 4.264623 ACTGTTCTTCCCTGAGAGATACCT 60.265 45.833 0.00 0.00 0.00 3.08
41 42 4.026744 TGTTCTTCCCTGAGAGATACCTG 58.973 47.826 0.00 0.00 0.00 4.00
42 43 3.320610 TCTTCCCTGAGAGATACCTGG 57.679 52.381 0.00 0.00 0.00 4.45
43 44 1.691434 CTTCCCTGAGAGATACCTGGC 59.309 57.143 0.00 0.00 0.00 4.85
44 45 0.468214 TCCCTGAGAGATACCTGGCG 60.468 60.000 0.00 0.00 0.00 5.69
45 46 1.365633 CCTGAGAGATACCTGGCGC 59.634 63.158 0.00 0.00 0.00 6.53
46 47 1.112315 CCTGAGAGATACCTGGCGCT 61.112 60.000 7.64 0.00 0.00 5.92
47 48 0.749649 CTGAGAGATACCTGGCGCTT 59.250 55.000 7.64 0.00 0.00 4.68
48 49 0.747255 TGAGAGATACCTGGCGCTTC 59.253 55.000 7.64 0.00 0.00 3.86
49 50 0.747255 GAGAGATACCTGGCGCTTCA 59.253 55.000 7.64 0.00 0.00 3.02
50 51 0.749649 AGAGATACCTGGCGCTTCAG 59.250 55.000 7.64 7.07 34.70 3.02
55 56 3.298958 CCTGGCGCTTCAGGTCTA 58.701 61.111 20.84 0.00 46.89 2.59
56 57 1.142748 CCTGGCGCTTCAGGTCTAG 59.857 63.158 20.84 0.00 46.89 2.43
57 58 1.608717 CCTGGCGCTTCAGGTCTAGT 61.609 60.000 20.84 0.00 46.89 2.57
58 59 0.247736 CTGGCGCTTCAGGTCTAGTT 59.752 55.000 7.64 0.00 0.00 2.24
59 60 0.037326 TGGCGCTTCAGGTCTAGTTG 60.037 55.000 7.64 0.00 0.00 3.16
60 61 0.741221 GGCGCTTCAGGTCTAGTTGG 60.741 60.000 7.64 0.00 0.00 3.77
61 62 0.037232 GCGCTTCAGGTCTAGTTGGT 60.037 55.000 0.00 0.00 0.00 3.67
64 65 2.288825 CGCTTCAGGTCTAGTTGGTGAA 60.289 50.000 0.00 0.00 0.00 3.18
89 91 2.467305 GTGTTGCTTTGCATACGTGTTG 59.533 45.455 0.00 0.00 38.76 3.33
107 109 0.105778 TGAAGTGACGGTCATGTGCA 59.894 50.000 14.78 7.05 0.00 4.57
108 110 0.792640 GAAGTGACGGTCATGTGCAG 59.207 55.000 14.78 0.00 0.00 4.41
109 111 0.106708 AAGTGACGGTCATGTGCAGT 59.893 50.000 14.78 0.00 0.00 4.40
110 112 0.601046 AGTGACGGTCATGTGCAGTG 60.601 55.000 14.78 0.00 0.00 3.66
111 113 1.960763 TGACGGTCATGTGCAGTGC 60.961 57.895 8.58 8.58 0.00 4.40
236 278 0.230260 CACACATGCAAAAGCAACGC 59.770 50.000 0.00 0.00 0.00 4.84
277 321 2.031420 CCTACTCGTTTCACACAGACGA 60.031 50.000 0.00 0.00 42.76 4.20
320 366 7.416154 TTTCCTAAATAATATTCCGCGTCTG 57.584 36.000 4.92 0.00 0.00 3.51
435 1033 4.953940 AGGAGATGAAATGAGGTCTAGC 57.046 45.455 0.00 0.00 0.00 3.42
444 1042 1.139947 GAGGTCTAGCGCCAGTGAC 59.860 63.158 2.29 7.47 0.00 3.67
449 1047 0.958876 TCTAGCGCCAGTGACGAAGA 60.959 55.000 2.29 1.48 0.00 2.87
477 5027 9.719355 TGATTAGAAAACTAGAGTGTTGCATAA 57.281 29.630 0.00 0.00 0.00 1.90
479 5029 6.487689 AGAAAACTAGAGTGTTGCATAAGC 57.512 37.500 0.00 0.00 42.57 3.09
510 5061 7.770801 AAAAATTCTACAAAGTGGTTTCAGC 57.229 32.000 0.00 0.00 0.00 4.26
522 5073 1.200020 GGTTTCAGCGGATGGAACTTG 59.800 52.381 16.28 0.00 45.52 3.16
524 5075 1.808411 TTCAGCGGATGGAACTTGTC 58.192 50.000 0.00 0.00 0.00 3.18
527 5078 1.734465 CAGCGGATGGAACTTGTCTTC 59.266 52.381 0.00 0.00 0.00 2.87
528 5079 1.347707 AGCGGATGGAACTTGTCTTCA 59.652 47.619 0.00 0.00 0.00 3.02
529 5080 2.151202 GCGGATGGAACTTGTCTTCAA 58.849 47.619 0.00 0.00 0.00 2.69
531 5082 3.004315 GCGGATGGAACTTGTCTTCAAAA 59.996 43.478 0.00 0.00 32.87 2.44
534 5085 6.546395 CGGATGGAACTTGTCTTCAAAATAG 58.454 40.000 0.00 0.00 32.87 1.73
535 5086 6.403636 CGGATGGAACTTGTCTTCAAAATAGG 60.404 42.308 0.00 0.00 32.87 2.57
536 5087 6.434340 GGATGGAACTTGTCTTCAAAATAGGT 59.566 38.462 0.00 0.00 32.87 3.08
538 5089 7.654022 TGGAACTTGTCTTCAAAATAGGTTT 57.346 32.000 0.00 0.00 32.87 3.27
539 5090 7.712797 TGGAACTTGTCTTCAAAATAGGTTTC 58.287 34.615 0.00 0.00 32.87 2.78
542 5093 9.581099 GAACTTGTCTTCAAAATAGGTTTCAAA 57.419 29.630 0.00 0.00 32.87 2.69
544 5095 9.533253 ACTTGTCTTCAAAATAGGTTTCAAATG 57.467 29.630 0.00 0.00 32.87 2.32
572 5137 9.790344 AAATATTTCAATCCCACAAATCAAACA 57.210 25.926 0.00 0.00 0.00 2.83
575 5140 4.615949 TCAATCCCACAAATCAAACAACG 58.384 39.130 0.00 0.00 0.00 4.10
577 5142 3.980646 TCCCACAAATCAAACAACGAG 57.019 42.857 0.00 0.00 0.00 4.18
589 5154 2.844122 ACAACGAGCACAGGAAAAAC 57.156 45.000 0.00 0.00 0.00 2.43
607 5172 7.251281 GGAAAAACTCCTTAGGATTGAAATCG 58.749 38.462 0.00 0.00 41.61 3.34
608 5173 6.759497 AAAACTCCTTAGGATTGAAATCGG 57.241 37.500 0.00 0.00 36.27 4.18
617 5193 5.164620 AGGATTGAAATCGGCCAAAATTT 57.835 34.783 2.24 5.45 36.27 1.82
620 5196 5.063817 GGATTGAAATCGGCCAAAATTTCTG 59.936 40.000 24.46 0.56 40.77 3.02
621 5197 4.599047 TGAAATCGGCCAAAATTTCTGT 57.401 36.364 24.46 2.02 40.77 3.41
623 5199 4.038522 TGAAATCGGCCAAAATTTCTGTGA 59.961 37.500 24.46 10.61 40.77 3.58
625 5201 4.599047 ATCGGCCAAAATTTCTGTGAAA 57.401 36.364 2.24 0.00 0.00 2.69
626 5202 4.599047 TCGGCCAAAATTTCTGTGAAAT 57.401 36.364 2.24 0.25 0.00 2.17
628 5204 4.987912 TCGGCCAAAATTTCTGTGAAATTC 59.012 37.500 15.67 6.31 0.00 2.17
629 5205 4.152223 CGGCCAAAATTTCTGTGAAATTCC 59.848 41.667 15.67 12.19 0.00 3.01
630 5206 5.308014 GGCCAAAATTTCTGTGAAATTCCT 58.692 37.500 15.67 6.61 0.00 3.36
632 5208 6.262944 GGCCAAAATTTCTGTGAAATTCCTTT 59.737 34.615 15.67 6.92 0.00 3.11
633 5209 7.134163 GCCAAAATTTCTGTGAAATTCCTTTG 58.866 34.615 15.67 15.26 0.00 2.77
634 5210 7.012232 GCCAAAATTTCTGTGAAATTCCTTTGA 59.988 33.333 19.44 0.00 0.00 2.69
635 5211 8.337532 CCAAAATTTCTGTGAAATTCCTTTGAC 58.662 33.333 19.44 0.00 0.00 3.18
637 5213 8.877808 AAATTTCTGTGAAATTCCTTTGACTC 57.122 30.769 15.67 0.00 30.75 3.36
638 5214 5.673337 TTCTGTGAAATTCCTTTGACTCG 57.327 39.130 0.00 0.00 30.75 4.18
640 5216 4.750098 TCTGTGAAATTCCTTTGACTCGAC 59.250 41.667 0.00 0.00 30.75 4.20
641 5217 3.813166 TGTGAAATTCCTTTGACTCGACC 59.187 43.478 0.00 0.00 30.75 4.79
642 5218 3.188667 GTGAAATTCCTTTGACTCGACCC 59.811 47.826 0.00 0.00 0.00 4.46
643 5219 3.072476 TGAAATTCCTTTGACTCGACCCT 59.928 43.478 0.00 0.00 0.00 4.34
644 5220 4.285003 TGAAATTCCTTTGACTCGACCCTA 59.715 41.667 0.00 0.00 0.00 3.53
646 5222 3.955650 TTCCTTTGACTCGACCCTAAG 57.044 47.619 0.00 0.00 0.00 2.18
647 5223 3.165087 TCCTTTGACTCGACCCTAAGA 57.835 47.619 5.49 0.00 0.00 2.10
652 5249 3.777465 TGACTCGACCCTAAGAATTCG 57.223 47.619 0.00 0.00 0.00 3.34
655 5252 4.104066 GACTCGACCCTAAGAATTCGAAC 58.896 47.826 0.00 0.00 39.83 3.95
656 5253 3.119209 ACTCGACCCTAAGAATTCGAACC 60.119 47.826 0.00 0.00 39.83 3.62
657 5254 2.827322 TCGACCCTAAGAATTCGAACCA 59.173 45.455 0.00 0.00 37.55 3.67
661 5258 3.244770 ACCCTAAGAATTCGAACCAGCAA 60.245 43.478 0.00 0.00 0.00 3.91
666 5263 3.222603 AGAATTCGAACCAGCAAAAGGT 58.777 40.909 0.00 0.00 42.34 3.50
667 5264 3.004734 AGAATTCGAACCAGCAAAAGGTG 59.995 43.478 0.00 0.00 39.86 4.00
668 5265 1.757682 TTCGAACCAGCAAAAGGTGT 58.242 45.000 0.00 0.00 39.86 4.16
670 5267 3.134574 TCGAACCAGCAAAAGGTGTAT 57.865 42.857 0.00 0.00 39.86 2.29
680 5277 6.016777 CCAGCAAAAGGTGTATATCTGATTCC 60.017 42.308 0.00 0.00 0.00 3.01
681 5278 6.543465 CAGCAAAAGGTGTATATCTGATTCCA 59.457 38.462 0.00 0.00 0.00 3.53
683 5280 7.284034 AGCAAAAGGTGTATATCTGATTCCAAG 59.716 37.037 0.00 0.00 0.00 3.61
685 5282 5.832539 AGGTGTATATCTGATTCCAAGGG 57.167 43.478 0.00 0.00 0.00 3.95
686 5283 4.042187 AGGTGTATATCTGATTCCAAGGGC 59.958 45.833 0.00 0.00 0.00 5.19
687 5284 4.202461 GGTGTATATCTGATTCCAAGGGCA 60.202 45.833 0.00 0.00 0.00 5.36
688 5285 5.515534 GGTGTATATCTGATTCCAAGGGCAT 60.516 44.000 0.00 0.00 0.00 4.40
689 5286 6.296432 GGTGTATATCTGATTCCAAGGGCATA 60.296 42.308 0.00 0.00 0.00 3.14
690 5287 7.168219 GTGTATATCTGATTCCAAGGGCATAA 58.832 38.462 0.00 0.00 0.00 1.90
692 5289 8.393259 TGTATATCTGATTCCAAGGGCATAAAT 58.607 33.333 0.00 0.00 0.00 1.40
694 5291 8.814038 ATATCTGATTCCAAGGGCATAAATAC 57.186 34.615 0.00 0.00 0.00 1.89
696 5293 6.672593 TCTGATTCCAAGGGCATAAATACTT 58.327 36.000 0.00 0.00 0.00 2.24
697 5294 6.547141 TCTGATTCCAAGGGCATAAATACTTG 59.453 38.462 0.00 0.00 39.88 3.16
698 5295 5.068987 TGATTCCAAGGGCATAAATACTTGC 59.931 40.000 0.00 0.00 39.09 4.01
699 5296 4.249638 TCCAAGGGCATAAATACTTGCT 57.750 40.909 0.00 0.00 39.09 3.91
700 5297 4.207165 TCCAAGGGCATAAATACTTGCTC 58.793 43.478 0.00 0.00 39.71 4.26
702 5299 4.586001 CCAAGGGCATAAATACTTGCTCAT 59.414 41.667 0.00 0.00 41.93 2.90
703 5300 5.278660 CCAAGGGCATAAATACTTGCTCATC 60.279 44.000 0.00 0.00 41.93 2.92
704 5301 5.316158 AGGGCATAAATACTTGCTCATCT 57.684 39.130 0.00 0.00 41.93 2.90
706 5303 7.025520 AGGGCATAAATACTTGCTCATCTAT 57.974 36.000 0.00 0.00 41.93 1.98
707 5304 7.465116 AGGGCATAAATACTTGCTCATCTATT 58.535 34.615 0.00 0.00 41.93 1.73
708 5305 7.609532 AGGGCATAAATACTTGCTCATCTATTC 59.390 37.037 0.00 0.00 41.93 1.75
709 5306 7.391554 GGGCATAAATACTTGCTCATCTATTCA 59.608 37.037 0.00 0.00 39.21 2.57
710 5307 8.233190 GGCATAAATACTTGCTCATCTATTCAC 58.767 37.037 0.00 0.00 38.88 3.18
711 5308 8.777413 GCATAAATACTTGCTCATCTATTCACA 58.223 33.333 0.00 0.00 35.95 3.58
715 5312 5.496133 ACTTGCTCATCTATTCACAATGC 57.504 39.130 0.00 0.00 0.00 3.56
716 5313 5.191426 ACTTGCTCATCTATTCACAATGCT 58.809 37.500 0.00 0.00 0.00 3.79
717 5314 5.296283 ACTTGCTCATCTATTCACAATGCTC 59.704 40.000 0.00 0.00 0.00 4.26
718 5315 4.132336 TGCTCATCTATTCACAATGCTCC 58.868 43.478 0.00 0.00 0.00 4.70
719 5316 4.132336 GCTCATCTATTCACAATGCTCCA 58.868 43.478 0.00 0.00 0.00 3.86
720 5317 4.024218 GCTCATCTATTCACAATGCTCCAC 60.024 45.833 0.00 0.00 0.00 4.02
721 5318 5.363562 TCATCTATTCACAATGCTCCACT 57.636 39.130 0.00 0.00 0.00 4.00
722 5319 5.748402 TCATCTATTCACAATGCTCCACTT 58.252 37.500 0.00 0.00 0.00 3.16
723 5320 6.182627 TCATCTATTCACAATGCTCCACTTT 58.817 36.000 0.00 0.00 0.00 2.66
724 5321 6.660521 TCATCTATTCACAATGCTCCACTTTT 59.339 34.615 0.00 0.00 0.00 2.27
725 5322 6.500684 TCTATTCACAATGCTCCACTTTTC 57.499 37.500 0.00 0.00 0.00 2.29
726 5323 6.003326 TCTATTCACAATGCTCCACTTTTCA 58.997 36.000 0.00 0.00 0.00 2.69
727 5324 4.998671 TTCACAATGCTCCACTTTTCAA 57.001 36.364 0.00 0.00 0.00 2.69
728 5325 4.998671 TCACAATGCTCCACTTTTCAAA 57.001 36.364 0.00 0.00 0.00 2.69
729 5326 5.534207 TCACAATGCTCCACTTTTCAAAT 57.466 34.783 0.00 0.00 0.00 2.32
730 5327 5.291178 TCACAATGCTCCACTTTTCAAATG 58.709 37.500 0.00 0.00 0.00 2.32
731 5328 5.051816 CACAATGCTCCACTTTTCAAATGT 58.948 37.500 0.00 0.00 0.00 2.71
732 5329 5.524646 CACAATGCTCCACTTTTCAAATGTT 59.475 36.000 0.00 0.00 0.00 2.71
733 5330 5.754890 ACAATGCTCCACTTTTCAAATGTTC 59.245 36.000 0.00 0.00 0.00 3.18
734 5331 4.320608 TGCTCCACTTTTCAAATGTTCC 57.679 40.909 0.00 0.00 0.00 3.62
735 5332 3.960102 TGCTCCACTTTTCAAATGTTCCT 59.040 39.130 0.00 0.00 0.00 3.36
736 5333 4.202141 TGCTCCACTTTTCAAATGTTCCTG 60.202 41.667 0.00 0.00 0.00 3.86
737 5334 4.301628 CTCCACTTTTCAAATGTTCCTGC 58.698 43.478 0.00 0.00 0.00 4.85
738 5335 3.703556 TCCACTTTTCAAATGTTCCTGCA 59.296 39.130 0.00 0.00 0.00 4.41
739 5336 4.053295 CCACTTTTCAAATGTTCCTGCAG 58.947 43.478 6.78 6.78 0.00 4.41
740 5337 4.202141 CCACTTTTCAAATGTTCCTGCAGA 60.202 41.667 17.39 0.00 0.00 4.26
741 5338 5.510179 CCACTTTTCAAATGTTCCTGCAGAT 60.510 40.000 17.39 0.00 0.00 2.90
742 5339 5.404366 CACTTTTCAAATGTTCCTGCAGATG 59.596 40.000 17.39 0.00 0.00 2.90
743 5340 3.581024 TTCAAATGTTCCTGCAGATGC 57.419 42.857 17.39 4.82 42.50 3.91
744 5341 2.799017 TCAAATGTTCCTGCAGATGCT 58.201 42.857 17.39 0.00 42.66 3.79
745 5342 3.159472 TCAAATGTTCCTGCAGATGCTT 58.841 40.909 17.39 0.00 42.66 3.91
746 5343 3.057104 TCAAATGTTCCTGCAGATGCTTG 60.057 43.478 17.39 10.57 42.66 4.01
747 5344 0.815734 ATGTTCCTGCAGATGCTTGC 59.184 50.000 17.39 0.00 44.33 4.01
754 5351 3.477504 GCAGATGCTTGCAAACGAA 57.522 47.368 0.00 0.00 43.53 3.85
755 5352 1.334054 GCAGATGCTTGCAAACGAAG 58.666 50.000 0.00 0.00 43.53 3.79
756 5353 1.069022 GCAGATGCTTGCAAACGAAGA 60.069 47.619 0.00 0.00 43.53 2.87
757 5354 2.415090 GCAGATGCTTGCAAACGAAGAT 60.415 45.455 0.00 0.00 43.53 2.40
758 5355 3.181507 GCAGATGCTTGCAAACGAAGATA 60.182 43.478 0.00 0.00 43.53 1.98
759 5356 4.672542 GCAGATGCTTGCAAACGAAGATAA 60.673 41.667 0.00 0.00 43.53 1.75
760 5357 5.026462 CAGATGCTTGCAAACGAAGATAAG 58.974 41.667 0.00 0.00 0.00 1.73
761 5358 3.201726 TGCTTGCAAACGAAGATAAGC 57.798 42.857 0.00 0.00 40.52 3.09
762 5359 2.551887 TGCTTGCAAACGAAGATAAGCA 59.448 40.909 13.85 13.85 45.55 3.91
763 5360 2.911102 GCTTGCAAACGAAGATAAGCAC 59.089 45.455 0.00 0.00 40.02 4.40
764 5361 3.492313 CTTGCAAACGAAGATAAGCACC 58.508 45.455 0.00 0.00 0.00 5.01
765 5362 2.778299 TGCAAACGAAGATAAGCACCT 58.222 42.857 0.00 0.00 0.00 4.00
766 5363 3.146066 TGCAAACGAAGATAAGCACCTT 58.854 40.909 0.00 0.00 0.00 3.50
767 5364 3.568007 TGCAAACGAAGATAAGCACCTTT 59.432 39.130 0.00 0.00 0.00 3.11
768 5365 4.757657 TGCAAACGAAGATAAGCACCTTTA 59.242 37.500 0.00 0.00 0.00 1.85
769 5366 5.414454 TGCAAACGAAGATAAGCACCTTTAT 59.586 36.000 0.00 0.00 0.00 1.40
770 5367 6.072175 TGCAAACGAAGATAAGCACCTTTATT 60.072 34.615 0.00 0.00 0.00 1.40
771 5368 6.469275 GCAAACGAAGATAAGCACCTTTATTC 59.531 38.462 0.00 0.00 0.00 1.75
772 5369 6.679327 AACGAAGATAAGCACCTTTATTCC 57.321 37.500 0.00 0.00 0.00 3.01
773 5370 5.741011 ACGAAGATAAGCACCTTTATTCCA 58.259 37.500 0.00 0.00 0.00 3.53
774 5371 5.585047 ACGAAGATAAGCACCTTTATTCCAC 59.415 40.000 0.00 0.00 0.00 4.02
775 5372 5.276868 CGAAGATAAGCACCTTTATTCCACG 60.277 44.000 0.00 0.00 0.00 4.94
776 5373 3.877508 AGATAAGCACCTTTATTCCACGC 59.122 43.478 0.00 0.00 0.00 5.34
777 5374 1.173913 AAGCACCTTTATTCCACGCC 58.826 50.000 0.00 0.00 0.00 5.68
778 5375 0.679960 AGCACCTTTATTCCACGCCC 60.680 55.000 0.00 0.00 0.00 6.13
779 5376 0.679960 GCACCTTTATTCCACGCCCT 60.680 55.000 0.00 0.00 0.00 5.19
780 5377 1.407712 GCACCTTTATTCCACGCCCTA 60.408 52.381 0.00 0.00 0.00 3.53
781 5378 2.561569 CACCTTTATTCCACGCCCTAG 58.438 52.381 0.00 0.00 0.00 3.02
782 5379 2.169769 CACCTTTATTCCACGCCCTAGA 59.830 50.000 0.00 0.00 0.00 2.43
783 5380 2.841881 ACCTTTATTCCACGCCCTAGAA 59.158 45.455 0.00 0.00 0.00 2.10
784 5381 3.118371 ACCTTTATTCCACGCCCTAGAAG 60.118 47.826 0.00 0.00 0.00 2.85
785 5382 3.467803 CTTTATTCCACGCCCTAGAAGG 58.532 50.000 0.00 0.00 34.30 3.46
799 5396 6.441088 CCCTAGAAGGCTATATGTTCCTTT 57.559 41.667 0.00 1.95 40.07 3.11
800 5397 6.842676 CCCTAGAAGGCTATATGTTCCTTTT 58.157 40.000 0.00 4.47 40.07 2.27
801 5398 6.937465 CCCTAGAAGGCTATATGTTCCTTTTC 59.063 42.308 0.00 0.00 40.07 2.29
802 5399 6.937465 CCTAGAAGGCTATATGTTCCTTTTCC 59.063 42.308 0.00 0.00 40.07 3.13
803 5400 6.582929 AGAAGGCTATATGTTCCTTTTCCT 57.417 37.500 0.00 0.00 40.07 3.36
804 5401 6.596621 AGAAGGCTATATGTTCCTTTTCCTC 58.403 40.000 0.00 0.00 40.07 3.71
805 5402 6.388394 AGAAGGCTATATGTTCCTTTTCCTCT 59.612 38.462 0.00 0.00 40.07 3.69
806 5403 6.181206 AGGCTATATGTTCCTTTTCCTCTC 57.819 41.667 0.00 0.00 0.00 3.20
807 5404 5.072464 AGGCTATATGTTCCTTTTCCTCTCC 59.928 44.000 0.00 0.00 0.00 3.71
808 5405 5.163195 GGCTATATGTTCCTTTTCCTCTCCA 60.163 44.000 0.00 0.00 0.00 3.86
809 5406 5.760743 GCTATATGTTCCTTTTCCTCTCCAC 59.239 44.000 0.00 0.00 0.00 4.02
810 5407 2.543777 TGTTCCTTTTCCTCTCCACG 57.456 50.000 0.00 0.00 0.00 4.94
811 5408 1.157585 GTTCCTTTTCCTCTCCACGC 58.842 55.000 0.00 0.00 0.00 5.34
812 5409 0.036306 TTCCTTTTCCTCTCCACGCC 59.964 55.000 0.00 0.00 0.00 5.68
813 5410 0.836400 TCCTTTTCCTCTCCACGCCT 60.836 55.000 0.00 0.00 0.00 5.52
814 5411 0.902531 CCTTTTCCTCTCCACGCCTA 59.097 55.000 0.00 0.00 0.00 3.93
815 5412 1.278127 CCTTTTCCTCTCCACGCCTAA 59.722 52.381 0.00 0.00 0.00 2.69
816 5413 2.092914 CCTTTTCCTCTCCACGCCTAAT 60.093 50.000 0.00 0.00 0.00 1.73
817 5414 3.610911 CTTTTCCTCTCCACGCCTAATT 58.389 45.455 0.00 0.00 0.00 1.40
818 5415 4.383770 CCTTTTCCTCTCCACGCCTAATTA 60.384 45.833 0.00 0.00 0.00 1.40
819 5416 4.829872 TTTCCTCTCCACGCCTAATTAA 57.170 40.909 0.00 0.00 0.00 1.40
820 5417 4.829872 TTCCTCTCCACGCCTAATTAAA 57.170 40.909 0.00 0.00 0.00 1.52
821 5418 4.133013 TCCTCTCCACGCCTAATTAAAC 57.867 45.455 0.00 0.00 0.00 2.01
822 5419 3.773119 TCCTCTCCACGCCTAATTAAACT 59.227 43.478 0.00 0.00 0.00 2.66
823 5420 4.957954 TCCTCTCCACGCCTAATTAAACTA 59.042 41.667 0.00 0.00 0.00 2.24
824 5421 5.422970 TCCTCTCCACGCCTAATTAAACTAA 59.577 40.000 0.00 0.00 0.00 2.24
825 5422 5.522824 CCTCTCCACGCCTAATTAAACTAAC 59.477 44.000 0.00 0.00 0.00 2.34
826 5423 6.290294 TCTCCACGCCTAATTAAACTAACT 57.710 37.500 0.00 0.00 0.00 2.24
827 5424 7.408756 TCTCCACGCCTAATTAAACTAACTA 57.591 36.000 0.00 0.00 0.00 2.24
828 5425 7.839907 TCTCCACGCCTAATTAAACTAACTAA 58.160 34.615 0.00 0.00 0.00 2.24
829 5426 7.761249 TCTCCACGCCTAATTAAACTAACTAAC 59.239 37.037 0.00 0.00 0.00 2.34
830 5427 7.614494 TCCACGCCTAATTAAACTAACTAACT 58.386 34.615 0.00 0.00 0.00 2.24
831 5428 8.748412 TCCACGCCTAATTAAACTAACTAACTA 58.252 33.333 0.00 0.00 0.00 2.24
832 5429 9.028185 CCACGCCTAATTAAACTAACTAACTAG 57.972 37.037 0.00 0.00 0.00 2.57
833 5430 8.538039 CACGCCTAATTAAACTAACTAACTAGC 58.462 37.037 0.00 0.00 0.00 3.42
834 5431 7.708322 ACGCCTAATTAAACTAACTAACTAGCC 59.292 37.037 0.00 0.00 0.00 3.93
835 5432 7.707893 CGCCTAATTAAACTAACTAACTAGCCA 59.292 37.037 0.00 0.00 0.00 4.75
836 5433 8.824781 GCCTAATTAAACTAACTAACTAGCCAC 58.175 37.037 0.00 0.00 0.00 5.01
837 5434 9.322773 CCTAATTAAACTAACTAACTAGCCACC 57.677 37.037 0.00 0.00 0.00 4.61
838 5435 9.880157 CTAATTAAACTAACTAACTAGCCACCA 57.120 33.333 0.00 0.00 0.00 4.17
840 5437 9.749340 AATTAAACTAACTAACTAGCCACCATT 57.251 29.630 0.00 0.00 0.00 3.16
841 5438 9.749340 ATTAAACTAACTAACTAGCCACCATTT 57.251 29.630 0.00 0.00 0.00 2.32
842 5439 7.683437 AAACTAACTAACTAGCCACCATTTC 57.317 36.000 0.00 0.00 0.00 2.17
843 5440 6.368779 ACTAACTAACTAGCCACCATTTCA 57.631 37.500 0.00 0.00 0.00 2.69
844 5441 6.171213 ACTAACTAACTAGCCACCATTTCAC 58.829 40.000 0.00 0.00 0.00 3.18
845 5442 3.951663 ACTAACTAGCCACCATTTCACC 58.048 45.455 0.00 0.00 0.00 4.02
846 5443 1.821216 AACTAGCCACCATTTCACCG 58.179 50.000 0.00 0.00 0.00 4.94
847 5444 0.676782 ACTAGCCACCATTTCACCGC 60.677 55.000 0.00 0.00 0.00 5.68
848 5445 1.705337 CTAGCCACCATTTCACCGCG 61.705 60.000 0.00 0.00 0.00 6.46
849 5446 2.457743 TAGCCACCATTTCACCGCGT 62.458 55.000 4.92 0.00 0.00 6.01
850 5447 2.560861 CCACCATTTCACCGCGTG 59.439 61.111 4.92 3.64 34.45 5.34
851 5448 2.126888 CACCATTTCACCGCGTGC 60.127 61.111 4.92 0.00 32.98 5.34
852 5449 3.361977 ACCATTTCACCGCGTGCC 61.362 61.111 4.92 0.00 32.98 5.01
853 5450 4.114997 CCATTTCACCGCGTGCCC 62.115 66.667 4.92 0.00 32.98 5.36
854 5451 3.055719 CATTTCACCGCGTGCCCT 61.056 61.111 4.92 0.00 32.98 5.19
855 5452 3.055719 ATTTCACCGCGTGCCCTG 61.056 61.111 4.92 0.00 32.98 4.45
856 5453 3.545124 ATTTCACCGCGTGCCCTGA 62.545 57.895 4.92 0.00 32.98 3.86
857 5454 2.819984 ATTTCACCGCGTGCCCTGAT 62.820 55.000 4.92 0.00 32.98 2.90
858 5455 3.950794 TTCACCGCGTGCCCTGATC 62.951 63.158 4.92 0.00 32.98 2.92
864 5461 3.197790 CGTGCCCTGATCGCCTTG 61.198 66.667 0.00 0.00 0.00 3.61
865 5462 3.512516 GTGCCCTGATCGCCTTGC 61.513 66.667 0.00 0.00 0.00 4.01
876 5473 2.351276 GCCTTGCGAGAGGGGAAA 59.649 61.111 1.22 0.00 37.29 3.13
877 5474 1.746991 GCCTTGCGAGAGGGGAAAG 60.747 63.158 1.22 0.00 37.29 2.62
878 5475 1.983224 CCTTGCGAGAGGGGAAAGA 59.017 57.895 1.22 0.00 32.94 2.52
879 5476 0.324943 CCTTGCGAGAGGGGAAAGAA 59.675 55.000 1.22 0.00 32.94 2.52
880 5477 1.271379 CCTTGCGAGAGGGGAAAGAAA 60.271 52.381 1.22 0.00 32.94 2.52
881 5478 2.504367 CTTGCGAGAGGGGAAAGAAAA 58.496 47.619 0.00 0.00 0.00 2.29
882 5479 2.185004 TGCGAGAGGGGAAAGAAAAG 57.815 50.000 0.00 0.00 0.00 2.27
883 5480 0.805614 GCGAGAGGGGAAAGAAAAGC 59.194 55.000 0.00 0.00 0.00 3.51
884 5481 1.611936 GCGAGAGGGGAAAGAAAAGCT 60.612 52.381 0.00 0.00 0.00 3.74
885 5482 2.784347 CGAGAGGGGAAAGAAAAGCTT 58.216 47.619 0.00 0.00 38.88 3.74
925 5522 7.992180 AAAACTTTTAGTCTCATTGCTTGTG 57.008 32.000 0.00 0.00 0.00 3.33
926 5523 6.942532 AACTTTTAGTCTCATTGCTTGTGA 57.057 33.333 0.00 0.00 0.00 3.58
927 5524 6.305693 ACTTTTAGTCTCATTGCTTGTGAC 57.694 37.500 11.87 11.87 45.16 3.67
930 5527 0.798776 GTCTCATTGCTTGTGACGGG 59.201 55.000 6.66 0.00 38.61 5.28
932 5529 1.926511 CTCATTGCTTGTGACGGGCC 61.927 60.000 0.00 0.00 0.00 5.80
934 5531 1.530419 ATTGCTTGTGACGGGCCAA 60.530 52.632 4.39 0.00 0.00 4.52
935 5532 0.899717 ATTGCTTGTGACGGGCCAAT 60.900 50.000 4.39 0.00 0.00 3.16
937 5534 1.112315 TGCTTGTGACGGGCCAATTT 61.112 50.000 4.39 0.00 0.00 1.82
939 5536 1.135402 GCTTGTGACGGGCCAATTTAG 60.135 52.381 4.39 0.00 0.00 1.85
940 5537 2.432444 CTTGTGACGGGCCAATTTAGA 58.568 47.619 4.39 0.00 0.00 2.10
941 5538 2.570415 TGTGACGGGCCAATTTAGAA 57.430 45.000 4.39 0.00 0.00 2.10
997 5610 9.750125 AGAAGTTTGAGTGAATAATTGTTTTCC 57.250 29.630 0.00 0.00 0.00 3.13
998 5611 9.750125 GAAGTTTGAGTGAATAATTGTTTTCCT 57.250 29.630 0.00 0.00 0.00 3.36
1072 7838 2.238521 ACAAATGACCAACGCAGGATT 58.761 42.857 0.10 0.00 0.00 3.01
1073 7839 2.627699 ACAAATGACCAACGCAGGATTT 59.372 40.909 0.10 0.00 0.00 2.17
1074 7840 3.069443 ACAAATGACCAACGCAGGATTTT 59.931 39.130 0.10 0.00 0.00 1.82
1075 7841 4.057432 CAAATGACCAACGCAGGATTTTT 58.943 39.130 0.10 0.00 0.00 1.94
1108 7875 6.501453 AGAATCCAAATCCTCCAAAATTTCCA 59.499 34.615 0.00 0.00 0.00 3.53
1110 7877 6.298441 TCCAAATCCTCCAAAATTTCCATC 57.702 37.500 0.00 0.00 0.00 3.51
1137 7905 1.810755 CTTTGAACCGGCCCTAAGAAC 59.189 52.381 0.00 0.00 0.00 3.01
1150 7918 4.499188 GCCCTAAGAACTCAAACCAACAAC 60.499 45.833 0.00 0.00 0.00 3.32
1284 8073 0.881159 CGTTCCACGCCCTACAAACA 60.881 55.000 0.00 0.00 33.65 2.83
1295 8084 4.454504 CGCCCTACAAACAGACTAACAATT 59.545 41.667 0.00 0.00 0.00 2.32
1298 8087 6.569801 GCCCTACAAACAGACTAACAATTTCC 60.570 42.308 0.00 0.00 0.00 3.13
1299 8088 6.715264 CCCTACAAACAGACTAACAATTTCCT 59.285 38.462 0.00 0.00 0.00 3.36
1363 8584 6.238897 CGTTCTCATCTCAGCCTCTATTTAGT 60.239 42.308 0.00 0.00 0.00 2.24
1364 8585 6.892658 TCTCATCTCAGCCTCTATTTAGTC 57.107 41.667 0.00 0.00 0.00 2.59
1377 8598 5.507637 TCTATTTAGTCTCTTCCACTCCGT 58.492 41.667 0.00 0.00 0.00 4.69
1405 8626 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1406 8627 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1407 8628 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1408 8629 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1409 8630 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1410 8631 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1411 8632 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1412 8633 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1413 8634 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1414 8635 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1415 8636 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1416 8637 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1417 8638 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1418 8639 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1419 8640 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1420 8641 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1421 8642 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1422 8643 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1429 8650 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1446 8667 0.612229 ACACAGCTCCATGTCTCCTG 59.388 55.000 0.00 0.00 0.00 3.86
1464 8686 4.148825 AGCTCACCGCCGATCACC 62.149 66.667 0.00 0.00 40.39 4.02
1491 8721 4.717629 CTGAGTTGCGCCGACCGA 62.718 66.667 4.18 0.00 40.02 4.69
1500 8730 0.935196 GCGCCGACCGAAAAAGATAT 59.065 50.000 0.00 0.00 40.02 1.63
2072 9336 4.901123 CGTGTGTGCGGACCCACA 62.901 66.667 21.11 9.68 42.99 4.17
2208 9472 1.797635 GAAGATGAGCCGCTAATGAGC 59.202 52.381 0.00 0.00 46.00 4.26
2233 9497 2.499205 CGGTGCCAGCTTCCGATA 59.501 61.111 17.19 0.00 46.05 2.92
2394 9658 0.908910 TGGTGGACAAGATGCCGTAT 59.091 50.000 0.00 0.00 0.00 3.06
2526 9790 1.475403 TCTTCGAGTGGGATCAGACC 58.525 55.000 0.00 0.00 0.00 3.85
2616 9880 2.021068 CTCCCGATGCCGATGTGTCT 62.021 60.000 0.00 0.00 38.22 3.41
3228 10492 2.338015 CCTTCTCCCGTCCGACGAA 61.338 63.158 22.40 7.49 46.05 3.85
3237 10501 0.317103 CGTCCGACGAAGCTATGAGG 60.317 60.000 16.03 0.00 46.05 3.86
3246 10510 2.093447 CGAAGCTATGAGGAAAGTGGGT 60.093 50.000 0.00 0.00 0.00 4.51
3249 10513 4.489306 AGCTATGAGGAAAGTGGGTAAC 57.511 45.455 0.00 0.00 0.00 2.50
3745 11009 1.683943 GCTAATCTTGATGCTGCCCA 58.316 50.000 0.00 0.00 0.00 5.36
3872 11136 3.461773 CCACCTGCGTCCGATCCT 61.462 66.667 0.00 0.00 0.00 3.24
3936 11200 3.749064 GTCGCTCACCTGGCTCGA 61.749 66.667 0.00 0.00 0.00 4.04
3978 11242 2.280119 GCGGCGATGTGGATGCTA 60.280 61.111 12.98 0.00 0.00 3.49
4322 11586 1.074319 TTTGACACGATACCGAGCGC 61.074 55.000 0.00 0.00 38.26 5.92
4325 11589 2.277692 CACGATACCGAGCGCGAA 60.278 61.111 12.10 0.00 38.26 4.70
4327 11591 2.326897 CGATACCGAGCGCGAAGA 59.673 61.111 12.10 0.00 40.82 2.87
4530 11794 2.362889 CCCATGAAGGTGGTGGCC 60.363 66.667 0.00 0.00 37.57 5.36
4626 11890 1.144936 GCGGCTGCCTTCTATGTCT 59.855 57.895 17.92 0.00 33.98 3.41
4707 11991 5.470098 CAGTTCCAGTTGCAGTTTGTAGTAT 59.530 40.000 0.00 0.00 0.00 2.12
4721 12005 6.592994 AGTTTGTAGTATTAGCTCGTTTTCCC 59.407 38.462 0.00 0.00 0.00 3.97
4726 12010 6.496338 AGTATTAGCTCGTTTTCCCTTTTG 57.504 37.500 0.00 0.00 0.00 2.44
4765 12298 9.986833 GTAGTACTTAGCTAGTAAAGAACACTC 57.013 37.037 0.00 4.90 40.93 3.51
4826 12379 6.497437 TGATTCTTGTGTCAAGATTTGTGTG 58.503 36.000 12.02 0.00 0.00 3.82
4840 12737 7.656707 AGATTTGTGTGGTTTATTTTCATGC 57.343 32.000 0.00 0.00 0.00 4.06
4856 12753 4.566545 TCATGCGTTGTTTCATGACTTT 57.433 36.364 0.00 0.00 42.72 2.66
4894 12976 2.445525 ACTTGCCTCTCTTTGGGGTAAA 59.554 45.455 0.00 0.00 0.00 2.01
4897 12979 2.289565 GCCTCTCTTTGGGGTAAATCG 58.710 52.381 0.00 0.00 0.00 3.34
4907 12989 7.599171 TCTTTGGGGTAAATCGATTTTCTTTC 58.401 34.615 27.10 15.25 0.00 2.62
4930 13013 2.037901 TGGCTGGATTTTTGACTTGCA 58.962 42.857 0.00 0.00 0.00 4.08
4941 13024 0.257328 TGACTTGCACCTGTTTGGGA 59.743 50.000 0.00 0.00 41.11 4.37
4953 13036 4.941873 ACCTGTTTGGGATAAGTCGAATTC 59.058 41.667 0.00 0.00 41.11 2.17
5011 13095 2.001872 GCCAAATTTTCGATTGGGCAG 58.998 47.619 15.48 0.00 45.03 4.85
5015 13099 4.157656 CCAAATTTTCGATTGGGCAGTAGA 59.842 41.667 7.51 0.00 41.93 2.59
5016 13100 5.163519 CCAAATTTTCGATTGGGCAGTAGAT 60.164 40.000 7.51 0.00 41.93 1.98
5018 13102 2.910688 TTCGATTGGGCAGTAGATCC 57.089 50.000 0.00 0.00 0.00 3.36
5021 13105 2.705658 TCGATTGGGCAGTAGATCCATT 59.294 45.455 0.00 0.00 0.00 3.16
5022 13106 3.901222 TCGATTGGGCAGTAGATCCATTA 59.099 43.478 0.00 0.00 0.00 1.90
5027 13111 6.702449 TTGGGCAGTAGATCCATTATACAT 57.298 37.500 0.00 0.00 0.00 2.29
5052 13136 7.830940 ATTGCATATGTTTATGTTTGTGTGG 57.169 32.000 4.29 0.00 37.99 4.17
5053 13137 5.718146 TGCATATGTTTATGTTTGTGTGGG 58.282 37.500 4.29 0.00 37.99 4.61
5121 13205 3.630168 ACATGGGTATGTTATGCAGCAA 58.370 40.909 0.00 0.00 45.01 3.91
5135 13219 4.443913 TGCAGCAATTCTACTGTACGTA 57.556 40.909 0.00 0.00 36.26 3.57
5155 13239 4.430118 CGTATGTCGCGTGAAAATTCATTC 59.570 41.667 5.77 0.00 39.73 2.67
5159 13243 3.070748 TCGCGTGAAAATTCATTCTGGA 58.929 40.909 5.77 0.00 39.73 3.86
5163 13247 5.452302 CGCGTGAAAATTCATTCTGGATTAC 59.548 40.000 0.00 0.00 39.73 1.89
5207 13292 3.366070 CCTGCTTTGAGATTTGTGCTCTG 60.366 47.826 0.00 0.00 33.57 3.35
5214 13302 3.251729 TGAGATTTGTGCTCTGTTTCTGC 59.748 43.478 0.00 0.00 33.57 4.26
5216 13304 4.645535 AGATTTGTGCTCTGTTTCTGCTA 58.354 39.130 0.00 0.00 0.00 3.49
5221 13309 4.893608 TGTGCTCTGTTTCTGCTATGTTA 58.106 39.130 0.00 0.00 0.00 2.41
5272 13361 1.609208 ATCGCATATTTGGGCCTGTC 58.391 50.000 4.53 0.00 35.84 3.51
5286 13375 3.131046 GGGCCTGTCAATTCCTTAACATG 59.869 47.826 0.84 0.00 0.00 3.21
5294 13383 4.100529 CAATTCCTTAACATGCTGAAGCG 58.899 43.478 0.00 0.00 45.83 4.68
5306 13395 1.159285 CTGAAGCGCATTTCCTGTGA 58.841 50.000 11.47 0.00 37.57 3.58
5313 13402 2.799412 GCGCATTTCCTGTGAGATCTAG 59.201 50.000 0.30 0.00 37.57 2.43
5325 13414 3.056832 TGAGATCTAGCCCTCCACTCTA 58.943 50.000 0.00 0.00 0.00 2.43
5476 13566 8.665175 CAGAAGTTGCAATATTGTTTGACTAG 57.335 34.615 16.61 0.00 0.00 2.57
5479 13569 7.145932 AGTTGCAATATTGTTTGACTAGTCC 57.854 36.000 20.11 5.58 0.00 3.85
5505 13595 7.959689 TGCATACTACAAAAATGTGCAATTT 57.040 28.000 0.00 0.00 38.07 1.82
5527 13617 1.926510 GGTGCAAAGTTGTGTTGAAGC 59.073 47.619 0.00 0.00 0.00 3.86
5528 13618 2.417243 GGTGCAAAGTTGTGTTGAAGCT 60.417 45.455 0.00 0.00 30.66 3.74
5536 13626 7.435192 GCAAAGTTGTGTTGAAGCTTTTATAGT 59.565 33.333 0.00 0.00 0.00 2.12
5661 13753 8.700439 TCTTTAAGGGTAATATTAATGCCACC 57.300 34.615 0.00 2.26 0.00 4.61
5674 13766 4.476628 AATGCCACCAATTCATTCCTTC 57.523 40.909 0.00 0.00 0.00 3.46
5680 13772 5.264395 CCACCAATTCATTCCTTCTTAGGT 58.736 41.667 0.00 0.00 42.60 3.08
5684 13777 7.814587 CACCAATTCATTCCTTCTTAGGTTTTC 59.185 37.037 0.00 0.00 42.60 2.29
5689 13782 8.533569 TTCATTCCTTCTTAGGTTTTCTTTGT 57.466 30.769 0.00 0.00 42.60 2.83
5733 13826 8.309163 TGCTTCTTGTTGCATATTTTAAAAGG 57.691 30.769 6.79 0.33 33.94 3.11
5734 13827 7.095271 TGCTTCTTGTTGCATATTTTAAAAGGC 60.095 33.333 6.79 10.21 33.94 4.35
5735 13828 7.095271 GCTTCTTGTTGCATATTTTAAAAGGCA 60.095 33.333 16.24 16.24 0.00 4.75
5736 13829 7.650834 TCTTGTTGCATATTTTAAAAGGCAC 57.349 32.000 18.59 15.02 0.00 5.01
5737 13830 7.212976 TCTTGTTGCATATTTTAAAAGGCACA 58.787 30.769 18.59 16.59 0.00 4.57
5738 13831 7.712639 TCTTGTTGCATATTTTAAAAGGCACAA 59.287 29.630 18.59 20.24 0.00 3.33
5739 13832 7.183580 TGTTGCATATTTTAAAAGGCACAAC 57.816 32.000 21.10 21.10 35.45 3.32
5740 13833 6.989169 TGTTGCATATTTTAAAAGGCACAACT 59.011 30.769 24.55 6.49 35.79 3.16
5741 13834 8.144478 TGTTGCATATTTTAAAAGGCACAACTA 58.856 29.630 24.55 15.86 35.79 2.24
5742 13835 9.150348 GTTGCATATTTTAAAAGGCACAACTAT 57.850 29.630 18.59 3.41 32.91 2.12
5743 13836 9.717942 TTGCATATTTTAAAAGGCACAACTATT 57.282 25.926 18.59 0.00 0.00 1.73
5744 13837 9.717942 TGCATATTTTAAAAGGCACAACTATTT 57.282 25.926 16.24 0.00 0.00 1.40
5745 13838 9.971744 GCATATTTTAAAAGGCACAACTATTTG 57.028 29.630 6.79 0.00 38.83 2.32
5755 13848 9.638239 AAAGGCACAACTATTTGTTATTATGTG 57.362 29.630 0.00 0.00 43.89 3.21
5756 13849 7.257722 AGGCACAACTATTTGTTATTATGTGC 58.742 34.615 16.68 16.68 43.89 4.57
5757 13850 7.032580 GGCACAACTATTTGTTATTATGTGCA 58.967 34.615 23.59 0.00 46.40 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.465632 ACAGTATTGTAATCCAGCGTCA 57.534 40.909 0.00 0.00 35.25 4.35
1 2 5.109903 AGAACAGTATTGTAATCCAGCGTC 58.890 41.667 0.00 0.00 36.23 5.19
2 3 5.086104 AGAACAGTATTGTAATCCAGCGT 57.914 39.130 0.00 0.00 36.23 5.07
3 4 5.006746 GGAAGAACAGTATTGTAATCCAGCG 59.993 44.000 10.34 0.00 36.23 5.18
4 5 5.297029 GGGAAGAACAGTATTGTAATCCAGC 59.703 44.000 14.69 0.00 36.23 4.85
5 6 6.540189 CAGGGAAGAACAGTATTGTAATCCAG 59.460 42.308 14.69 6.74 36.23 3.86
6 7 6.214615 TCAGGGAAGAACAGTATTGTAATCCA 59.785 38.462 14.69 0.00 36.23 3.41
7 8 6.650120 TCAGGGAAGAACAGTATTGTAATCC 58.350 40.000 7.90 7.90 36.23 3.01
8 9 7.556844 TCTCAGGGAAGAACAGTATTGTAATC 58.443 38.462 0.00 0.00 36.23 1.75
9 10 7.400339 TCTCTCAGGGAAGAACAGTATTGTAAT 59.600 37.037 0.00 0.00 36.23 1.89
10 11 6.724441 TCTCTCAGGGAAGAACAGTATTGTAA 59.276 38.462 0.00 0.00 36.23 2.41
11 12 6.253758 TCTCTCAGGGAAGAACAGTATTGTA 58.746 40.000 0.00 0.00 36.23 2.41
12 13 5.087323 TCTCTCAGGGAAGAACAGTATTGT 58.913 41.667 0.00 0.00 39.87 2.71
13 14 5.667539 TCTCTCAGGGAAGAACAGTATTG 57.332 43.478 0.00 0.00 0.00 1.90
14 15 6.325286 GGTATCTCTCAGGGAAGAACAGTATT 59.675 42.308 0.00 0.00 0.00 1.89
15 16 5.836358 GGTATCTCTCAGGGAAGAACAGTAT 59.164 44.000 0.00 0.00 0.00 2.12
16 17 5.044030 AGGTATCTCTCAGGGAAGAACAGTA 60.044 44.000 0.00 0.00 0.00 2.74
17 18 4.027437 GGTATCTCTCAGGGAAGAACAGT 58.973 47.826 0.00 0.00 0.00 3.55
18 19 4.099266 CAGGTATCTCTCAGGGAAGAACAG 59.901 50.000 0.00 0.00 0.00 3.16
19 20 4.026744 CAGGTATCTCTCAGGGAAGAACA 58.973 47.826 0.00 0.00 0.00 3.18
20 21 3.386402 CCAGGTATCTCTCAGGGAAGAAC 59.614 52.174 0.00 0.00 0.00 3.01
21 22 3.647636 CCAGGTATCTCTCAGGGAAGAA 58.352 50.000 0.00 0.00 0.00 2.52
22 23 2.691241 GCCAGGTATCTCTCAGGGAAGA 60.691 54.545 0.00 0.00 0.00 2.87
23 24 1.691434 GCCAGGTATCTCTCAGGGAAG 59.309 57.143 0.00 0.00 0.00 3.46
24 25 1.794714 GCCAGGTATCTCTCAGGGAA 58.205 55.000 0.00 0.00 0.00 3.97
25 26 0.468214 CGCCAGGTATCTCTCAGGGA 60.468 60.000 0.00 0.00 0.00 4.20
26 27 2.045280 CGCCAGGTATCTCTCAGGG 58.955 63.158 0.00 0.00 0.00 4.45
27 28 1.112315 AGCGCCAGGTATCTCTCAGG 61.112 60.000 2.29 0.00 0.00 3.86
28 29 0.749649 AAGCGCCAGGTATCTCTCAG 59.250 55.000 2.29 0.00 0.00 3.35
29 30 0.747255 GAAGCGCCAGGTATCTCTCA 59.253 55.000 2.29 0.00 0.00 3.27
30 31 0.747255 TGAAGCGCCAGGTATCTCTC 59.253 55.000 2.29 0.00 0.00 3.20
31 32 0.749649 CTGAAGCGCCAGGTATCTCT 59.250 55.000 2.29 0.00 0.00 3.10
32 33 0.249657 CCTGAAGCGCCAGGTATCTC 60.250 60.000 20.84 0.13 46.62 2.75
33 34 1.826024 CCTGAAGCGCCAGGTATCT 59.174 57.895 20.84 0.00 46.62 1.98
34 35 4.445699 CCTGAAGCGCCAGGTATC 57.554 61.111 20.84 4.62 46.62 2.24
39 40 0.247736 AACTAGACCTGAAGCGCCAG 59.752 55.000 2.29 5.03 0.00 4.85
40 41 0.037326 CAACTAGACCTGAAGCGCCA 60.037 55.000 2.29 0.00 0.00 5.69
41 42 0.741221 CCAACTAGACCTGAAGCGCC 60.741 60.000 2.29 0.00 0.00 6.53
42 43 0.037232 ACCAACTAGACCTGAAGCGC 60.037 55.000 0.00 0.00 0.00 5.92
43 44 1.272490 TCACCAACTAGACCTGAAGCG 59.728 52.381 0.00 0.00 0.00 4.68
44 45 3.402628 TTCACCAACTAGACCTGAAGC 57.597 47.619 0.00 0.00 0.00 3.86
45 46 4.692625 CACATTCACCAACTAGACCTGAAG 59.307 45.833 0.00 0.00 0.00 3.02
46 47 4.102524 ACACATTCACCAACTAGACCTGAA 59.897 41.667 0.00 0.00 0.00 3.02
47 48 3.646162 ACACATTCACCAACTAGACCTGA 59.354 43.478 0.00 0.00 0.00 3.86
48 49 3.748048 CACACATTCACCAACTAGACCTG 59.252 47.826 0.00 0.00 0.00 4.00
49 50 3.391296 ACACACATTCACCAACTAGACCT 59.609 43.478 0.00 0.00 0.00 3.85
50 51 3.740115 ACACACATTCACCAACTAGACC 58.260 45.455 0.00 0.00 0.00 3.85
51 52 4.554723 GCAACACACATTCACCAACTAGAC 60.555 45.833 0.00 0.00 0.00 2.59
52 53 3.563808 GCAACACACATTCACCAACTAGA 59.436 43.478 0.00 0.00 0.00 2.43
53 54 3.565482 AGCAACACACATTCACCAACTAG 59.435 43.478 0.00 0.00 0.00 2.57
54 55 3.550820 AGCAACACACATTCACCAACTA 58.449 40.909 0.00 0.00 0.00 2.24
55 56 2.378038 AGCAACACACATTCACCAACT 58.622 42.857 0.00 0.00 0.00 3.16
56 57 2.869233 AGCAACACACATTCACCAAC 57.131 45.000 0.00 0.00 0.00 3.77
57 58 3.519579 CAAAGCAACACACATTCACCAA 58.480 40.909 0.00 0.00 0.00 3.67
58 59 2.738000 GCAAAGCAACACACATTCACCA 60.738 45.455 0.00 0.00 0.00 4.17
59 60 1.860326 GCAAAGCAACACACATTCACC 59.140 47.619 0.00 0.00 0.00 4.02
60 61 2.538437 TGCAAAGCAACACACATTCAC 58.462 42.857 0.00 0.00 34.76 3.18
61 62 2.955477 TGCAAAGCAACACACATTCA 57.045 40.000 0.00 0.00 34.76 2.57
64 65 2.293122 ACGTATGCAAAGCAACACACAT 59.707 40.909 0.00 0.00 43.62 3.21
89 91 0.792640 CTGCACATGACCGTCACTTC 59.207 55.000 2.57 0.00 0.00 3.01
107 109 3.687321 CTGCCGCCCACTATGCACT 62.687 63.158 0.00 0.00 0.00 4.40
108 110 3.204827 CTGCCGCCCACTATGCAC 61.205 66.667 0.00 0.00 0.00 4.57
109 111 4.488136 CCTGCCGCCCACTATGCA 62.488 66.667 0.00 0.00 0.00 3.96
110 112 3.482232 ATCCTGCCGCCCACTATGC 62.482 63.158 0.00 0.00 0.00 3.14
111 113 1.598962 CATCCTGCCGCCCACTATG 60.599 63.158 0.00 0.00 0.00 2.23
320 366 9.698309 CCCCTTCTTTATCTTTTTCTTTTTCTC 57.302 33.333 0.00 0.00 0.00 2.87
399 994 4.530553 TCATCTCCTAGGTGCACACTTTAA 59.469 41.667 20.43 0.00 0.00 1.52
400 995 4.093743 TCATCTCCTAGGTGCACACTTTA 58.906 43.478 20.43 4.43 0.00 1.85
401 996 2.906389 TCATCTCCTAGGTGCACACTTT 59.094 45.455 20.43 3.39 0.00 2.66
402 997 2.540383 TCATCTCCTAGGTGCACACTT 58.460 47.619 20.43 6.07 0.00 3.16
435 1033 1.645034 ATCATTCTTCGTCACTGGCG 58.355 50.000 0.00 0.00 0.00 5.69
444 1042 9.360093 ACACTCTAGTTTTCTAATCATTCTTCG 57.640 33.333 0.00 0.00 31.45 3.79
449 1047 8.621532 TGCAACACTCTAGTTTTCTAATCATT 57.378 30.769 0.00 0.00 31.45 2.57
489 5039 4.023193 CCGCTGAAACCACTTTGTAGAATT 60.023 41.667 0.00 0.00 0.00 2.17
491 5041 2.875933 CCGCTGAAACCACTTTGTAGAA 59.124 45.455 0.00 0.00 0.00 2.10
492 5042 2.103432 TCCGCTGAAACCACTTTGTAGA 59.897 45.455 0.00 0.00 0.00 2.59
493 5043 2.489971 TCCGCTGAAACCACTTTGTAG 58.510 47.619 0.00 0.00 0.00 2.74
495 5045 1.608590 CATCCGCTGAAACCACTTTGT 59.391 47.619 0.00 0.00 0.00 2.83
501 5052 0.400213 AGTTCCATCCGCTGAAACCA 59.600 50.000 0.00 0.00 0.00 3.67
507 5058 1.734465 GAAGACAAGTTCCATCCGCTG 59.266 52.381 0.00 0.00 0.00 5.18
508 5059 1.347707 TGAAGACAAGTTCCATCCGCT 59.652 47.619 0.00 0.00 0.00 5.52
510 5061 4.829064 TTTTGAAGACAAGTTCCATCCG 57.171 40.909 0.00 0.00 37.32 4.18
549 5114 7.383572 CGTTGTTTGATTTGTGGGATTGAAATA 59.616 33.333 0.00 0.00 0.00 1.40
551 5116 5.521735 CGTTGTTTGATTTGTGGGATTGAAA 59.478 36.000 0.00 0.00 0.00 2.69
563 5128 2.948979 TCCTGTGCTCGTTGTTTGATTT 59.051 40.909 0.00 0.00 0.00 2.17
572 5137 1.947456 GGAGTTTTTCCTGTGCTCGTT 59.053 47.619 0.00 0.00 43.16 3.85
589 5154 3.142174 GGCCGATTTCAATCCTAAGGAG 58.858 50.000 0.00 0.00 34.05 3.69
594 5159 5.930837 AATTTTGGCCGATTTCAATCCTA 57.069 34.783 0.00 0.00 31.68 2.94
600 5165 4.038522 TCACAGAAATTTTGGCCGATTTCA 59.961 37.500 27.06 13.28 42.12 2.69
601 5166 4.555262 TCACAGAAATTTTGGCCGATTTC 58.445 39.130 21.99 21.99 40.73 2.17
603 5168 4.599047 TTCACAGAAATTTTGGCCGATT 57.401 36.364 0.00 0.00 0.00 3.34
604 5169 4.599047 TTTCACAGAAATTTTGGCCGAT 57.401 36.364 0.00 0.00 0.00 4.18
607 5172 5.308014 AGGAATTTCACAGAAATTTTGGCC 58.692 37.500 16.20 13.02 30.68 5.36
608 5173 6.866010 AAGGAATTTCACAGAAATTTTGGC 57.134 33.333 16.20 6.25 30.68 4.52
617 5193 4.750098 GTCGAGTCAAAGGAATTTCACAGA 59.250 41.667 0.00 0.00 0.00 3.41
620 5196 3.188667 GGGTCGAGTCAAAGGAATTTCAC 59.811 47.826 0.00 0.00 0.00 3.18
621 5197 3.072476 AGGGTCGAGTCAAAGGAATTTCA 59.928 43.478 0.00 0.00 0.00 2.69
623 5199 3.790089 AGGGTCGAGTCAAAGGAATTT 57.210 42.857 0.00 0.00 0.00 1.82
625 5201 4.094476 TCTTAGGGTCGAGTCAAAGGAAT 58.906 43.478 0.00 0.00 0.00 3.01
626 5202 3.503365 TCTTAGGGTCGAGTCAAAGGAA 58.497 45.455 0.00 0.00 0.00 3.36
628 5204 3.955650 TTCTTAGGGTCGAGTCAAAGG 57.044 47.619 0.00 0.00 0.00 3.11
629 5205 4.563184 CGAATTCTTAGGGTCGAGTCAAAG 59.437 45.833 3.52 0.00 35.54 2.77
630 5206 4.219070 TCGAATTCTTAGGGTCGAGTCAAA 59.781 41.667 3.52 0.00 37.58 2.69
632 5208 3.349927 TCGAATTCTTAGGGTCGAGTCA 58.650 45.455 3.52 0.00 37.58 3.41
633 5209 4.104066 GTTCGAATTCTTAGGGTCGAGTC 58.896 47.826 0.00 0.00 42.83 3.36
634 5210 3.119209 GGTTCGAATTCTTAGGGTCGAGT 60.119 47.826 0.00 0.00 42.83 4.18
635 5211 3.119245 TGGTTCGAATTCTTAGGGTCGAG 60.119 47.826 0.00 0.00 42.83 4.04
637 5213 3.187700 CTGGTTCGAATTCTTAGGGTCG 58.812 50.000 0.00 0.00 34.85 4.79
638 5214 2.937149 GCTGGTTCGAATTCTTAGGGTC 59.063 50.000 0.00 0.00 0.00 4.46
640 5216 2.985896 TGCTGGTTCGAATTCTTAGGG 58.014 47.619 0.00 0.00 0.00 3.53
641 5217 5.371115 TTTTGCTGGTTCGAATTCTTAGG 57.629 39.130 0.00 0.00 0.00 2.69
642 5218 5.048713 ACCTTTTGCTGGTTCGAATTCTTAG 60.049 40.000 0.00 0.00 33.34 2.18
643 5219 4.825085 ACCTTTTGCTGGTTCGAATTCTTA 59.175 37.500 0.00 0.00 33.34 2.10
644 5220 3.636764 ACCTTTTGCTGGTTCGAATTCTT 59.363 39.130 0.00 0.00 33.34 2.52
646 5222 3.243401 ACACCTTTTGCTGGTTCGAATTC 60.243 43.478 0.00 0.00 35.28 2.17
647 5223 2.693074 ACACCTTTTGCTGGTTCGAATT 59.307 40.909 0.00 0.00 35.28 2.17
652 5249 5.880332 TCAGATATACACCTTTTGCTGGTTC 59.120 40.000 0.00 0.00 35.28 3.62
655 5252 6.016777 GGAATCAGATATACACCTTTTGCTGG 60.017 42.308 0.00 0.00 0.00 4.85
656 5253 6.543465 TGGAATCAGATATACACCTTTTGCTG 59.457 38.462 0.00 0.00 0.00 4.41
657 5254 6.662755 TGGAATCAGATATACACCTTTTGCT 58.337 36.000 0.00 0.00 0.00 3.91
661 5258 6.605119 CCCTTGGAATCAGATATACACCTTT 58.395 40.000 0.00 0.00 0.00 3.11
666 5263 5.848286 ATGCCCTTGGAATCAGATATACA 57.152 39.130 0.00 0.00 0.00 2.29
667 5264 8.814038 ATTTATGCCCTTGGAATCAGATATAC 57.186 34.615 0.00 0.00 0.00 1.47
668 5265 9.905713 GTATTTATGCCCTTGGAATCAGATATA 57.094 33.333 0.00 0.00 0.00 0.86
670 5267 7.988937 AGTATTTATGCCCTTGGAATCAGATA 58.011 34.615 0.00 0.00 0.00 1.98
680 5277 5.533903 AGATGAGCAAGTATTTATGCCCTTG 59.466 40.000 0.00 0.00 43.57 3.61
681 5278 5.699143 AGATGAGCAAGTATTTATGCCCTT 58.301 37.500 0.00 0.00 43.57 3.95
683 5280 7.391554 TGAATAGATGAGCAAGTATTTATGCCC 59.608 37.037 0.00 0.00 43.57 5.36
685 5282 8.777413 TGTGAATAGATGAGCAAGTATTTATGC 58.223 33.333 0.00 0.00 42.87 3.14
689 5286 8.133627 GCATTGTGAATAGATGAGCAAGTATTT 58.866 33.333 0.00 0.00 0.00 1.40
690 5287 7.501559 AGCATTGTGAATAGATGAGCAAGTATT 59.498 33.333 0.00 0.00 0.00 1.89
692 5289 6.351711 AGCATTGTGAATAGATGAGCAAGTA 58.648 36.000 0.00 0.00 0.00 2.24
694 5291 5.277876 GGAGCATTGTGAATAGATGAGCAAG 60.278 44.000 0.00 0.00 0.00 4.01
696 5293 4.132336 GGAGCATTGTGAATAGATGAGCA 58.868 43.478 0.00 0.00 0.00 4.26
697 5294 4.024218 GTGGAGCATTGTGAATAGATGAGC 60.024 45.833 0.00 0.00 0.00 4.26
698 5295 5.366460 AGTGGAGCATTGTGAATAGATGAG 58.634 41.667 0.00 0.00 0.00 2.90
699 5296 5.363562 AGTGGAGCATTGTGAATAGATGA 57.636 39.130 0.00 0.00 0.00 2.92
700 5297 6.446781 AAAGTGGAGCATTGTGAATAGATG 57.553 37.500 0.00 0.00 0.00 2.90
702 5299 6.003326 TGAAAAGTGGAGCATTGTGAATAGA 58.997 36.000 0.00 0.00 0.00 1.98
703 5300 6.258230 TGAAAAGTGGAGCATTGTGAATAG 57.742 37.500 0.00 0.00 0.00 1.73
704 5301 6.647334 TTGAAAAGTGGAGCATTGTGAATA 57.353 33.333 0.00 0.00 0.00 1.75
706 5303 4.998671 TTGAAAAGTGGAGCATTGTGAA 57.001 36.364 0.00 0.00 0.00 3.18
707 5304 4.998671 TTTGAAAAGTGGAGCATTGTGA 57.001 36.364 0.00 0.00 0.00 3.58
708 5305 5.051816 ACATTTGAAAAGTGGAGCATTGTG 58.948 37.500 0.00 0.00 37.94 3.33
709 5306 5.280654 ACATTTGAAAAGTGGAGCATTGT 57.719 34.783 0.00 0.00 37.94 2.71
710 5307 5.178067 GGAACATTTGAAAAGTGGAGCATTG 59.822 40.000 0.00 0.00 37.94 2.82
711 5308 5.070847 AGGAACATTTGAAAAGTGGAGCATT 59.929 36.000 0.00 0.00 37.94 3.56
712 5309 4.590222 AGGAACATTTGAAAAGTGGAGCAT 59.410 37.500 0.00 0.00 37.94 3.79
713 5310 3.960102 AGGAACATTTGAAAAGTGGAGCA 59.040 39.130 0.00 0.00 37.94 4.26
714 5311 4.301628 CAGGAACATTTGAAAAGTGGAGC 58.698 43.478 0.00 0.00 37.94 4.70
715 5312 4.202141 TGCAGGAACATTTGAAAAGTGGAG 60.202 41.667 0.00 0.00 37.94 3.86
716 5313 3.703556 TGCAGGAACATTTGAAAAGTGGA 59.296 39.130 0.00 0.00 37.94 4.02
717 5314 4.053295 CTGCAGGAACATTTGAAAAGTGG 58.947 43.478 5.57 0.00 37.94 4.00
718 5315 4.935702 TCTGCAGGAACATTTGAAAAGTG 58.064 39.130 15.13 0.00 39.72 3.16
719 5316 5.535333 CATCTGCAGGAACATTTGAAAAGT 58.465 37.500 15.13 0.00 0.00 2.66
720 5317 4.387862 GCATCTGCAGGAACATTTGAAAAG 59.612 41.667 15.13 0.00 41.59 2.27
721 5318 4.039488 AGCATCTGCAGGAACATTTGAAAA 59.961 37.500 15.13 0.00 45.16 2.29
722 5319 3.575256 AGCATCTGCAGGAACATTTGAAA 59.425 39.130 15.13 0.00 45.16 2.69
723 5320 3.159472 AGCATCTGCAGGAACATTTGAA 58.841 40.909 15.13 0.00 45.16 2.69
724 5321 2.799017 AGCATCTGCAGGAACATTTGA 58.201 42.857 15.13 0.00 45.16 2.69
725 5322 3.250744 CAAGCATCTGCAGGAACATTTG 58.749 45.455 15.13 7.87 45.16 2.32
726 5323 2.353406 GCAAGCATCTGCAGGAACATTT 60.353 45.455 15.13 0.00 45.16 2.32
727 5324 1.203994 GCAAGCATCTGCAGGAACATT 59.796 47.619 15.13 0.03 45.16 2.71
728 5325 0.815734 GCAAGCATCTGCAGGAACAT 59.184 50.000 15.13 0.00 45.16 2.71
729 5326 2.260247 GCAAGCATCTGCAGGAACA 58.740 52.632 15.13 0.00 45.16 3.18
736 5333 1.069022 TCTTCGTTTGCAAGCATCTGC 60.069 47.619 13.97 0.00 42.95 4.26
737 5334 2.975410 TCTTCGTTTGCAAGCATCTG 57.025 45.000 13.97 0.00 0.00 2.90
738 5335 4.437930 GCTTATCTTCGTTTGCAAGCATCT 60.438 41.667 13.97 0.00 38.55 2.90
739 5336 3.788163 GCTTATCTTCGTTTGCAAGCATC 59.212 43.478 13.97 0.00 38.55 3.91
740 5337 3.191162 TGCTTATCTTCGTTTGCAAGCAT 59.809 39.130 13.97 1.87 42.35 3.79
741 5338 2.551887 TGCTTATCTTCGTTTGCAAGCA 59.448 40.909 13.97 6.20 44.30 3.91
742 5339 2.911102 GTGCTTATCTTCGTTTGCAAGC 59.089 45.455 2.75 2.75 39.02 4.01
743 5340 3.189287 AGGTGCTTATCTTCGTTTGCAAG 59.811 43.478 0.00 0.00 32.10 4.01
744 5341 3.146066 AGGTGCTTATCTTCGTTTGCAA 58.854 40.909 0.00 0.00 32.10 4.08
745 5342 2.778299 AGGTGCTTATCTTCGTTTGCA 58.222 42.857 0.00 0.00 0.00 4.08
746 5343 3.831715 AAGGTGCTTATCTTCGTTTGC 57.168 42.857 0.00 0.00 0.00 3.68
747 5344 6.967199 GGAATAAAGGTGCTTATCTTCGTTTG 59.033 38.462 0.00 0.00 0.00 2.93
748 5345 6.657541 TGGAATAAAGGTGCTTATCTTCGTTT 59.342 34.615 0.00 0.00 0.00 3.60
749 5346 6.093633 GTGGAATAAAGGTGCTTATCTTCGTT 59.906 38.462 0.00 0.00 0.00 3.85
750 5347 5.585047 GTGGAATAAAGGTGCTTATCTTCGT 59.415 40.000 0.00 0.00 0.00 3.85
751 5348 5.276868 CGTGGAATAAAGGTGCTTATCTTCG 60.277 44.000 0.00 0.00 0.00 3.79
752 5349 5.504173 GCGTGGAATAAAGGTGCTTATCTTC 60.504 44.000 0.00 0.00 0.00 2.87
753 5350 4.335594 GCGTGGAATAAAGGTGCTTATCTT 59.664 41.667 0.00 0.00 0.00 2.40
754 5351 3.877508 GCGTGGAATAAAGGTGCTTATCT 59.122 43.478 0.00 0.00 0.00 1.98
755 5352 3.003378 GGCGTGGAATAAAGGTGCTTATC 59.997 47.826 0.00 0.00 0.00 1.75
756 5353 2.949644 GGCGTGGAATAAAGGTGCTTAT 59.050 45.455 0.00 0.00 0.00 1.73
757 5354 2.361789 GGCGTGGAATAAAGGTGCTTA 58.638 47.619 0.00 0.00 0.00 3.09
758 5355 1.173913 GGCGTGGAATAAAGGTGCTT 58.826 50.000 0.00 0.00 0.00 3.91
759 5356 0.679960 GGGCGTGGAATAAAGGTGCT 60.680 55.000 0.00 0.00 0.00 4.40
760 5357 0.679960 AGGGCGTGGAATAAAGGTGC 60.680 55.000 0.00 0.00 0.00 5.01
761 5358 2.169769 TCTAGGGCGTGGAATAAAGGTG 59.830 50.000 0.00 0.00 0.00 4.00
762 5359 2.474112 TCTAGGGCGTGGAATAAAGGT 58.526 47.619 0.00 0.00 0.00 3.50
763 5360 3.467803 CTTCTAGGGCGTGGAATAAAGG 58.532 50.000 6.45 0.00 0.00 3.11
764 5361 3.467803 CCTTCTAGGGCGTGGAATAAAG 58.532 50.000 6.45 0.00 0.00 1.85
765 5362 2.420967 GCCTTCTAGGGCGTGGAATAAA 60.421 50.000 6.45 0.00 42.82 1.40
766 5363 1.140252 GCCTTCTAGGGCGTGGAATAA 59.860 52.381 6.45 0.00 42.82 1.40
767 5364 0.756903 GCCTTCTAGGGCGTGGAATA 59.243 55.000 6.45 0.00 42.82 1.75
768 5365 1.527370 GCCTTCTAGGGCGTGGAAT 59.473 57.895 6.45 0.00 42.82 3.01
769 5366 2.987125 GCCTTCTAGGGCGTGGAA 59.013 61.111 5.86 5.86 42.82 3.53
776 5373 6.441088 AAAGGAACATATAGCCTTCTAGGG 57.559 41.667 0.00 0.00 40.97 3.53
777 5374 6.937465 GGAAAAGGAACATATAGCCTTCTAGG 59.063 42.308 0.00 0.00 40.97 3.02
778 5375 7.740805 AGGAAAAGGAACATATAGCCTTCTAG 58.259 38.462 0.00 0.00 40.97 2.43
779 5376 7.569111 AGAGGAAAAGGAACATATAGCCTTCTA 59.431 37.037 0.00 0.00 40.97 2.10
780 5377 6.388394 AGAGGAAAAGGAACATATAGCCTTCT 59.612 38.462 0.00 0.00 40.97 2.85
781 5378 6.596621 AGAGGAAAAGGAACATATAGCCTTC 58.403 40.000 0.00 0.00 40.97 3.46
782 5379 6.409810 GGAGAGGAAAAGGAACATATAGCCTT 60.410 42.308 0.00 0.00 43.56 4.35
783 5380 5.072464 GGAGAGGAAAAGGAACATATAGCCT 59.928 44.000 0.00 0.00 0.00 4.58
784 5381 5.163195 TGGAGAGGAAAAGGAACATATAGCC 60.163 44.000 0.00 0.00 0.00 3.93
785 5382 5.760743 GTGGAGAGGAAAAGGAACATATAGC 59.239 44.000 0.00 0.00 0.00 2.97
786 5383 5.986135 CGTGGAGAGGAAAAGGAACATATAG 59.014 44.000 0.00 0.00 0.00 1.31
787 5384 5.684030 GCGTGGAGAGGAAAAGGAACATATA 60.684 44.000 0.00 0.00 0.00 0.86
788 5385 4.770795 CGTGGAGAGGAAAAGGAACATAT 58.229 43.478 0.00 0.00 0.00 1.78
789 5386 3.618997 GCGTGGAGAGGAAAAGGAACATA 60.619 47.826 0.00 0.00 0.00 2.29
790 5387 2.876079 GCGTGGAGAGGAAAAGGAACAT 60.876 50.000 0.00 0.00 0.00 2.71
791 5388 1.542547 GCGTGGAGAGGAAAAGGAACA 60.543 52.381 0.00 0.00 0.00 3.18
792 5389 1.157585 GCGTGGAGAGGAAAAGGAAC 58.842 55.000 0.00 0.00 0.00 3.62
793 5390 0.036306 GGCGTGGAGAGGAAAAGGAA 59.964 55.000 0.00 0.00 0.00 3.36
794 5391 0.836400 AGGCGTGGAGAGGAAAAGGA 60.836 55.000 0.00 0.00 0.00 3.36
795 5392 0.902531 TAGGCGTGGAGAGGAAAAGG 59.097 55.000 0.00 0.00 0.00 3.11
796 5393 2.762535 TTAGGCGTGGAGAGGAAAAG 57.237 50.000 0.00 0.00 0.00 2.27
797 5394 3.713826 AATTAGGCGTGGAGAGGAAAA 57.286 42.857 0.00 0.00 0.00 2.29
798 5395 4.829872 TTAATTAGGCGTGGAGAGGAAA 57.170 40.909 0.00 0.00 0.00 3.13
799 5396 4.224370 AGTTTAATTAGGCGTGGAGAGGAA 59.776 41.667 0.00 0.00 0.00 3.36
800 5397 3.773119 AGTTTAATTAGGCGTGGAGAGGA 59.227 43.478 0.00 0.00 0.00 3.71
801 5398 4.138487 AGTTTAATTAGGCGTGGAGAGG 57.862 45.455 0.00 0.00 0.00 3.69
802 5399 6.338937 AGTTAGTTTAATTAGGCGTGGAGAG 58.661 40.000 0.00 0.00 0.00 3.20
803 5400 6.290294 AGTTAGTTTAATTAGGCGTGGAGA 57.710 37.500 0.00 0.00 0.00 3.71
804 5401 7.763071 AGTTAGTTAGTTTAATTAGGCGTGGAG 59.237 37.037 0.00 0.00 0.00 3.86
805 5402 7.614494 AGTTAGTTAGTTTAATTAGGCGTGGA 58.386 34.615 0.00 0.00 0.00 4.02
806 5403 7.838771 AGTTAGTTAGTTTAATTAGGCGTGG 57.161 36.000 0.00 0.00 0.00 4.94
807 5404 8.538039 GCTAGTTAGTTAGTTTAATTAGGCGTG 58.462 37.037 0.00 0.00 0.00 5.34
808 5405 7.708322 GGCTAGTTAGTTAGTTTAATTAGGCGT 59.292 37.037 5.72 0.00 36.71 5.68
809 5406 7.707893 TGGCTAGTTAGTTAGTTTAATTAGGCG 59.292 37.037 12.77 0.00 43.03 5.52
810 5407 8.824781 GTGGCTAGTTAGTTAGTTTAATTAGGC 58.175 37.037 11.52 11.52 41.77 3.93
811 5408 9.322773 GGTGGCTAGTTAGTTAGTTTAATTAGG 57.677 37.037 0.00 0.00 0.00 2.69
812 5409 9.880157 TGGTGGCTAGTTAGTTAGTTTAATTAG 57.120 33.333 0.00 0.00 0.00 1.73
814 5411 9.749340 AATGGTGGCTAGTTAGTTAGTTTAATT 57.251 29.630 0.00 0.00 0.00 1.40
815 5412 9.749340 AAATGGTGGCTAGTTAGTTAGTTTAAT 57.251 29.630 0.00 0.00 0.00 1.40
816 5413 9.223099 GAAATGGTGGCTAGTTAGTTAGTTTAA 57.777 33.333 0.00 0.00 0.00 1.52
817 5414 8.377034 TGAAATGGTGGCTAGTTAGTTAGTTTA 58.623 33.333 0.00 0.00 0.00 2.01
818 5415 7.174426 GTGAAATGGTGGCTAGTTAGTTAGTTT 59.826 37.037 0.00 0.00 0.00 2.66
819 5416 6.653740 GTGAAATGGTGGCTAGTTAGTTAGTT 59.346 38.462 0.00 0.00 0.00 2.24
820 5417 6.171213 GTGAAATGGTGGCTAGTTAGTTAGT 58.829 40.000 0.00 0.00 0.00 2.24
821 5418 5.585047 GGTGAAATGGTGGCTAGTTAGTTAG 59.415 44.000 0.00 0.00 0.00 2.34
822 5419 5.493809 GGTGAAATGGTGGCTAGTTAGTTA 58.506 41.667 0.00 0.00 0.00 2.24
823 5420 4.332828 GGTGAAATGGTGGCTAGTTAGTT 58.667 43.478 0.00 0.00 0.00 2.24
824 5421 3.618997 CGGTGAAATGGTGGCTAGTTAGT 60.619 47.826 0.00 0.00 0.00 2.24
825 5422 2.936498 CGGTGAAATGGTGGCTAGTTAG 59.064 50.000 0.00 0.00 0.00 2.34
826 5423 2.937873 GCGGTGAAATGGTGGCTAGTTA 60.938 50.000 0.00 0.00 0.00 2.24
827 5424 1.821216 CGGTGAAATGGTGGCTAGTT 58.179 50.000 0.00 0.00 0.00 2.24
828 5425 0.676782 GCGGTGAAATGGTGGCTAGT 60.677 55.000 0.00 0.00 0.00 2.57
829 5426 1.705337 CGCGGTGAAATGGTGGCTAG 61.705 60.000 0.00 0.00 0.00 3.42
830 5427 1.743623 CGCGGTGAAATGGTGGCTA 60.744 57.895 0.00 0.00 0.00 3.93
831 5428 3.055719 CGCGGTGAAATGGTGGCT 61.056 61.111 0.00 0.00 0.00 4.75
832 5429 3.361977 ACGCGGTGAAATGGTGGC 61.362 61.111 12.47 0.00 0.00 5.01
833 5430 2.560861 CACGCGGTGAAATGGTGG 59.439 61.111 12.47 0.00 35.23 4.61
834 5431 2.126888 GCACGCGGTGAAATGGTG 60.127 61.111 12.47 0.00 35.23 4.17
835 5432 3.361977 GGCACGCGGTGAAATGGT 61.362 61.111 12.47 0.00 35.23 3.55
836 5433 4.114997 GGGCACGCGGTGAAATGG 62.115 66.667 12.47 0.00 35.23 3.16
837 5434 3.055719 AGGGCACGCGGTGAAATG 61.056 61.111 12.47 0.00 35.23 2.32
838 5435 2.819984 ATCAGGGCACGCGGTGAAAT 62.820 55.000 12.47 0.00 35.23 2.17
839 5436 3.545124 ATCAGGGCACGCGGTGAAA 62.545 57.895 12.47 0.00 35.23 2.69
840 5437 3.950794 GATCAGGGCACGCGGTGAA 62.951 63.158 12.47 0.00 35.23 3.18
841 5438 4.451150 GATCAGGGCACGCGGTGA 62.451 66.667 12.47 5.42 35.23 4.02
847 5444 3.197790 CAAGGCGATCAGGGCACG 61.198 66.667 0.00 0.00 34.40 5.34
848 5445 3.512516 GCAAGGCGATCAGGGCAC 61.513 66.667 0.00 0.00 34.40 5.01
859 5456 1.746991 CTTTCCCCTCTCGCAAGGC 60.747 63.158 0.00 0.00 34.88 4.35
860 5457 0.324943 TTCTTTCCCCTCTCGCAAGG 59.675 55.000 0.00 0.00 36.08 3.61
861 5458 2.185004 TTTCTTTCCCCTCTCGCAAG 57.815 50.000 0.00 0.00 0.00 4.01
862 5459 2.504367 CTTTTCTTTCCCCTCTCGCAA 58.496 47.619 0.00 0.00 0.00 4.85
863 5460 1.882352 GCTTTTCTTTCCCCTCTCGCA 60.882 52.381 0.00 0.00 0.00 5.10
864 5461 0.805614 GCTTTTCTTTCCCCTCTCGC 59.194 55.000 0.00 0.00 0.00 5.03
865 5462 2.481289 AGCTTTTCTTTCCCCTCTCG 57.519 50.000 0.00 0.00 0.00 4.04
900 5497 8.250332 TCACAAGCAATGAGACTAAAAGTTTTT 58.750 29.630 6.10 0.00 0.00 1.94
901 5498 7.702348 GTCACAAGCAATGAGACTAAAAGTTTT 59.298 33.333 6.06 6.06 43.71 2.43
903 5500 6.511767 CGTCACAAGCAATGAGACTAAAAGTT 60.512 38.462 14.66 0.00 44.54 2.66
908 5505 3.325870 CCGTCACAAGCAATGAGACTAA 58.674 45.455 14.66 0.00 44.54 2.24
913 5510 1.503542 GCCCGTCACAAGCAATGAG 59.496 57.895 0.00 0.00 0.00 2.90
918 5515 1.112315 AAATTGGCCCGTCACAAGCA 61.112 50.000 0.00 0.00 0.00 3.91
920 5517 2.432444 TCTAAATTGGCCCGTCACAAG 58.568 47.619 0.00 0.00 0.00 3.16
921 5518 2.570415 TCTAAATTGGCCCGTCACAA 57.430 45.000 0.00 0.00 0.00 3.33
923 5520 2.479560 GCATTCTAAATTGGCCCGTCAC 60.480 50.000 0.00 0.00 0.00 3.67
925 5522 1.748493 TGCATTCTAAATTGGCCCGTC 59.252 47.619 0.00 0.00 0.00 4.79
926 5523 1.846007 TGCATTCTAAATTGGCCCGT 58.154 45.000 0.00 0.00 0.00 5.28
927 5524 3.057315 CCTATGCATTCTAAATTGGCCCG 60.057 47.826 3.54 0.00 0.00 6.13
928 5525 4.151883 TCCTATGCATTCTAAATTGGCCC 58.848 43.478 3.54 0.00 0.00 5.80
929 5526 5.789643 TTCCTATGCATTCTAAATTGGCC 57.210 39.130 3.54 0.00 0.00 5.36
930 5527 7.548780 TGTTTTTCCTATGCATTCTAAATTGGC 59.451 33.333 3.54 0.00 0.00 4.52
1049 7815 2.428890 TCCTGCGTTGGTCATTTGTTTT 59.571 40.909 0.00 0.00 0.00 2.43
1052 7818 1.909700 ATCCTGCGTTGGTCATTTGT 58.090 45.000 0.00 0.00 0.00 2.83
1074 7840 7.245292 TGGAGGATTTGGATTCTTAGGAAAAA 58.755 34.615 0.00 0.00 34.90 1.94
1075 7841 6.799827 TGGAGGATTTGGATTCTTAGGAAAA 58.200 36.000 0.00 0.00 34.90 2.29
1108 7875 3.306710 GGGCCGGTTCAAAGAAATTTGAT 60.307 43.478 1.90 0.00 40.25 2.57
1110 7877 2.037121 AGGGCCGGTTCAAAGAAATTTG 59.963 45.455 1.90 0.00 0.00 2.32
1124 7891 1.450025 GTTTGAGTTCTTAGGGCCGG 58.550 55.000 0.00 0.00 0.00 6.13
1137 7905 6.817765 ATATACACCTGTTGTTGGTTTGAG 57.182 37.500 0.00 0.00 39.91 3.02
1150 7918 6.998074 TGCCCTTAGAATCAAATATACACCTG 59.002 38.462 0.00 0.00 0.00 4.00
1212 7980 4.879545 GCGGGTATATTTGAAAAGTGGAGA 59.120 41.667 0.00 0.00 0.00 3.71
1233 8001 2.173951 TTCGTGTGCAAGCATCTGCG 62.174 55.000 0.00 1.53 45.74 5.18
1295 8084 3.126171 CACGCGGTGAAAATGATTAGGAA 59.874 43.478 12.47 0.00 35.23 3.36
1298 8087 2.440501 GCACGCGGTGAAAATGATTAG 58.559 47.619 12.47 0.00 35.23 1.73
1299 8088 1.131504 GGCACGCGGTGAAAATGATTA 59.868 47.619 12.47 0.00 35.23 1.75
1377 8598 1.548269 TGTGTGTGTGTGTCAGTGAGA 59.452 47.619 0.00 0.00 0.00 3.27
1405 8626 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1406 8627 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1407 8628 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1408 8629 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1409 8630 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1410 8631 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1411 8632 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1412 8633 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1413 8634 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
1414 8635 0.179192 GCTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
1415 8636 0.321564 AGCTGTGTGTGTGTGTGTGT 60.322 50.000 0.00 0.00 0.00 3.72
1416 8637 0.374758 GAGCTGTGTGTGTGTGTGTG 59.625 55.000 0.00 0.00 0.00 3.82
1417 8638 0.744414 GGAGCTGTGTGTGTGTGTGT 60.744 55.000 0.00 0.00 0.00 3.72
1418 8639 0.744057 TGGAGCTGTGTGTGTGTGTG 60.744 55.000 0.00 0.00 0.00 3.82
1419 8640 0.181114 ATGGAGCTGTGTGTGTGTGT 59.819 50.000 0.00 0.00 0.00 3.72
1420 8641 0.589708 CATGGAGCTGTGTGTGTGTG 59.410 55.000 0.00 0.00 0.00 3.82
1421 8642 0.181114 ACATGGAGCTGTGTGTGTGT 59.819 50.000 0.00 0.00 0.00 3.72
1422 8643 0.870393 GACATGGAGCTGTGTGTGTG 59.130 55.000 0.00 0.00 0.00 3.82
1429 8650 1.193323 CTCAGGAGACATGGAGCTGT 58.807 55.000 0.00 0.00 0.00 4.40
1465 8687 3.797546 GCAACTCAGCGCCTCAGC 61.798 66.667 2.29 0.00 37.41 4.26
1500 8730 5.105877 CGATGGAAGTCGCCTAGGATTATTA 60.106 44.000 14.75 0.00 34.56 0.98
1683 8935 1.219664 CTCGTTCCATGCCGGGTTA 59.780 57.895 2.18 0.00 34.36 2.85
1809 9061 2.966309 GCCGAGGAAGTTGTTGCGG 61.966 63.158 0.00 0.00 41.51 5.69
2072 9336 1.123861 TGTCACCTCTGCTTCTGGCT 61.124 55.000 0.00 0.00 42.39 4.75
2089 9353 0.034616 GCTCCTTGTGCTGTCTCTGT 59.965 55.000 0.00 0.00 0.00 3.41
2200 9464 0.103208 ACCGCTTCCGAGCTCATTAG 59.897 55.000 15.40 7.99 46.96 1.73
2233 9497 3.753434 CCTCTCTGACGCCGCTGT 61.753 66.667 0.00 0.00 0.00 4.40
2255 9519 4.467107 GCGGGGTCTCCTCCTCCT 62.467 72.222 0.00 0.00 0.00 3.69
2604 9868 4.730081 GCGATAGACACATCGGCA 57.270 55.556 7.52 0.00 46.20 5.69
2986 10250 1.909781 TCGTGCGGGTCTTTAGGGT 60.910 57.895 0.00 0.00 0.00 4.34
3228 10492 3.844211 TGTTACCCACTTTCCTCATAGCT 59.156 43.478 0.00 0.00 0.00 3.32
3237 10501 0.958876 CCGCCCTGTTACCCACTTTC 60.959 60.000 0.00 0.00 0.00 2.62
3246 10510 4.040426 TGCATGGCCGCCCTGTTA 62.040 61.111 15.24 3.63 0.00 2.41
3332 10596 1.396543 GAAGTCACTGCTCGCGTACG 61.397 60.000 11.84 11.84 42.01 3.67
3745 11009 2.436646 CATCCTCTTTGCGCCGGT 60.437 61.111 4.18 0.00 0.00 5.28
3872 11136 4.351938 CCTCGCGGTTCACGGACA 62.352 66.667 6.13 0.00 44.51 4.02
3920 11184 3.443925 CTCGAGCCAGGTGAGCGA 61.444 66.667 0.00 0.00 34.64 4.93
3962 11226 0.941463 GTCTAGCATCCACATCGCCG 60.941 60.000 0.00 0.00 0.00 6.46
4206 11470 2.047655 CTGCGCCGGTACTTCCAA 60.048 61.111 4.18 0.00 35.57 3.53
4322 11586 4.796231 CCACCTCCGCCGTCTTCG 62.796 72.222 0.00 0.00 0.00 3.79
4530 11794 3.751246 TAGAACCCGGCGACCACG 61.751 66.667 9.30 0.00 42.93 4.94
4626 11890 4.262036 GGCAGATCCTACATGATACGTTCA 60.262 45.833 0.00 0.00 39.12 3.18
4675 11959 0.947244 CAACTGGAACTGCAGTCCAC 59.053 55.000 25.10 17.27 0.00 4.02
4707 11991 3.822940 TCCAAAAGGGAAAACGAGCTAA 58.177 40.909 0.00 0.00 44.80 3.09
4721 12005 4.911390 ACTACAAGGTCCATCTCCAAAAG 58.089 43.478 0.00 0.00 0.00 2.27
4726 12010 5.221283 GCTAAGTACTACAAGGTCCATCTCC 60.221 48.000 0.00 0.00 0.00 3.71
4798 12350 7.863877 CACAAATCTTGACACAAGAATCAATGA 59.136 33.333 16.22 0.00 34.43 2.57
4800 12352 7.650504 CACACAAATCTTGACACAAGAATCAAT 59.349 33.333 16.22 0.00 34.43 2.57
4801 12353 6.974048 CACACAAATCTTGACACAAGAATCAA 59.026 34.615 16.22 0.00 33.82 2.57
4826 12379 6.517914 TGAAACAACGCATGAAAATAAACC 57.482 33.333 0.00 0.00 0.00 3.27
4840 12737 5.399301 CAGCCTAAAAAGTCATGAAACAACG 59.601 40.000 0.00 0.00 0.00 4.10
4894 12976 3.445096 CCAGCCAAGGAAAGAAAATCGAT 59.555 43.478 0.00 0.00 0.00 3.59
4897 12979 5.411831 AATCCAGCCAAGGAAAGAAAATC 57.588 39.130 0.00 0.00 41.92 2.17
4907 12989 3.656559 CAAGTCAAAAATCCAGCCAAGG 58.343 45.455 0.00 0.00 0.00 3.61
4930 13013 4.569719 ATTCGACTTATCCCAAACAGGT 57.430 40.909 0.00 0.00 34.66 4.00
4953 13036 5.703130 AGCAAGTCCAAAACTTAGCTAGAAG 59.297 40.000 0.00 0.00 46.69 2.85
5002 13086 6.711277 TGTATAATGGATCTACTGCCCAATC 58.289 40.000 0.00 0.00 33.15 2.67
5027 13111 7.978414 CCCACACAAACATAAACATATGCAATA 59.022 33.333 1.58 0.00 0.00 1.90
5037 13121 4.873259 AGCAAAACCCACACAAACATAAAC 59.127 37.500 0.00 0.00 0.00 2.01
5041 13125 3.625649 AAGCAAAACCCACACAAACAT 57.374 38.095 0.00 0.00 0.00 2.71
5045 13129 2.079925 GCAAAAGCAAAACCCACACAA 58.920 42.857 0.00 0.00 0.00 3.33
5048 13132 2.777832 AAGCAAAAGCAAAACCCACA 57.222 40.000 0.00 0.00 0.00 4.17
5051 13135 4.963276 AAGAAAAGCAAAAGCAAAACCC 57.037 36.364 0.00 0.00 0.00 4.11
5099 13183 4.429854 TGCTGCATAACATACCCATGTA 57.570 40.909 0.00 0.00 44.83 2.29
5110 13194 5.291128 ACGTACAGTAGAATTGCTGCATAAC 59.709 40.000 1.84 0.00 40.30 1.89
5113 13197 3.861840 ACGTACAGTAGAATTGCTGCAT 58.138 40.909 1.84 0.00 40.30 3.96
5121 13205 3.310774 ACGCGACATACGTACAGTAGAAT 59.689 43.478 15.93 0.00 43.02 2.40
5135 13219 4.406069 CAGAATGAATTTTCACGCGACAT 58.594 39.130 15.93 2.29 40.49 3.06
5172 13257 5.535783 TCTCAAAGCAGGAAATCAATGACAA 59.464 36.000 0.00 0.00 0.00 3.18
5185 13270 2.818432 AGAGCACAAATCTCAAAGCAGG 59.182 45.455 0.00 0.00 33.15 4.85
5207 13292 5.292101 AGAACTCGCATAACATAGCAGAAAC 59.708 40.000 0.00 0.00 0.00 2.78
5214 13302 5.730568 GCCCAAAAGAACTCGCATAACATAG 60.731 44.000 0.00 0.00 0.00 2.23
5216 13304 3.119495 GCCCAAAAGAACTCGCATAACAT 60.119 43.478 0.00 0.00 0.00 2.71
5221 13309 2.290323 ACTAGCCCAAAAGAACTCGCAT 60.290 45.455 0.00 0.00 0.00 4.73
5251 13340 3.146066 GACAGGCCCAAATATGCGATTA 58.854 45.455 0.00 0.00 0.00 1.75
5272 13361 4.100529 CGCTTCAGCATGTTAAGGAATTG 58.899 43.478 0.00 0.00 42.21 2.32
5286 13375 0.455633 CACAGGAAATGCGCTTCAGC 60.456 55.000 9.73 0.00 37.78 4.26
5294 13383 3.137533 GGCTAGATCTCACAGGAAATGC 58.862 50.000 0.00 0.00 0.00 3.56
5306 13395 3.011257 GGATAGAGTGGAGGGCTAGATCT 59.989 52.174 0.00 0.00 0.00 2.75
5313 13402 1.141858 CAAAGGGATAGAGTGGAGGGC 59.858 57.143 0.00 0.00 0.00 5.19
5325 13414 7.684428 GCAGTAAACAGAAAAGAACAAAGGGAT 60.684 37.037 0.00 0.00 0.00 3.85
5405 13495 7.859325 GTGTATACATTTACACTCACCCAAT 57.141 36.000 9.18 0.00 45.48 3.16
5462 13552 8.267894 AGTATGCAAGGACTAGTCAAACAATAT 58.732 33.333 23.91 11.14 0.00 1.28
5469 13559 6.599356 TTGTAGTATGCAAGGACTAGTCAA 57.401 37.500 23.91 3.18 35.19 3.18
5473 13563 8.177663 CACATTTTTGTAGTATGCAAGGACTAG 58.822 37.037 6.72 0.00 42.90 2.57
5476 13566 5.572896 GCACATTTTTGTAGTATGCAAGGAC 59.427 40.000 0.00 0.00 42.90 3.85
5505 13595 1.454201 TCAACACAACTTTGCACCGA 58.546 45.000 0.00 0.00 0.00 4.69
5652 13744 5.271598 AGAAGGAATGAATTGGTGGCATTA 58.728 37.500 0.00 0.00 32.80 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.