Multiple sequence alignment - TraesCS5B01G484000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G484000 chr5B 100.000 2720 0 0 1 2720 655615588 655612869 0.000000e+00 5024.0
1 TraesCS5B01G484000 chr5A 90.997 1544 65 30 209 1723 648613014 648611516 0.000000e+00 2013.0
2 TraesCS5B01G484000 chr5A 88.745 231 19 2 195 419 648614621 648614392 2.670000e-70 276.0
3 TraesCS5B01G484000 chr5A 100.000 28 0 0 1826 1853 648611436 648611409 5.000000e-03 52.8
4 TraesCS5B01G484000 chr5D 92.794 1249 73 10 829 2070 520377964 520376726 0.000000e+00 1792.0
5 TraesCS5B01G484000 chr5D 89.908 545 29 7 240 765 520378510 520377973 0.000000e+00 678.0
6 TraesCS5B01G484000 chr7D 79.088 636 120 10 2071 2697 315475989 315476620 2.500000e-115 425.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G484000 chr5B 655612869 655615588 2719 True 5024.0 5024 100.000000 1 2720 1 chr5B.!!$R1 2719
1 TraesCS5B01G484000 chr5A 648611409 648614621 3212 True 780.6 2013 93.247333 195 1853 3 chr5A.!!$R1 1658
2 TraesCS5B01G484000 chr5D 520376726 520378510 1784 True 1235.0 1792 91.351000 240 2070 2 chr5D.!!$R1 1830
3 TraesCS5B01G484000 chr7D 315475989 315476620 631 False 425.0 425 79.088000 2071 2697 1 chr7D.!!$F1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.035915 GCTTCAGTTCAGGGGAGGAC 60.036 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 3626 0.040425 GTTTGCGTTGAAGATGCCGT 60.04 50.0 0.0 0.0 39.64 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.719426 CCGAGAAGGACACGTAGTTT 57.281 50.000 0.00 0.00 41.10 2.66
20 21 2.325761 CCGAGAAGGACACGTAGTTTG 58.674 52.381 0.00 0.00 41.10 2.93
21 22 2.288030 CCGAGAAGGACACGTAGTTTGT 60.288 50.000 0.00 0.00 41.10 2.83
22 23 3.378339 CGAGAAGGACACGTAGTTTGTT 58.622 45.455 0.00 0.00 41.61 2.83
23 24 3.181774 CGAGAAGGACACGTAGTTTGTTG 59.818 47.826 0.00 0.00 41.61 3.33
24 25 2.870411 AGAAGGACACGTAGTTTGTTGC 59.130 45.455 0.00 0.00 41.61 4.17
25 26 2.614829 AGGACACGTAGTTTGTTGCT 57.385 45.000 0.00 0.00 41.61 3.91
26 27 2.210116 AGGACACGTAGTTTGTTGCTG 58.790 47.619 0.00 0.00 41.61 4.41
27 28 1.937899 GGACACGTAGTTTGTTGCTGT 59.062 47.619 0.00 0.00 41.61 4.40
28 29 2.033151 GGACACGTAGTTTGTTGCTGTC 60.033 50.000 0.00 0.00 41.61 3.51
29 30 2.605818 GACACGTAGTTTGTTGCTGTCA 59.394 45.455 0.00 0.00 41.61 3.58
30 31 2.607635 ACACGTAGTTTGTTGCTGTCAG 59.392 45.455 0.00 0.00 41.61 3.51
31 32 2.032894 CACGTAGTTTGTTGCTGTCAGG 60.033 50.000 1.14 0.00 41.61 3.86
32 33 1.531149 CGTAGTTTGTTGCTGTCAGGG 59.469 52.381 1.14 0.00 0.00 4.45
33 34 2.805295 CGTAGTTTGTTGCTGTCAGGGA 60.805 50.000 1.14 0.00 0.00 4.20
34 35 1.972872 AGTTTGTTGCTGTCAGGGAG 58.027 50.000 1.14 0.00 0.00 4.30
35 36 1.490490 AGTTTGTTGCTGTCAGGGAGA 59.510 47.619 1.14 0.00 0.00 3.71
36 37 1.876156 GTTTGTTGCTGTCAGGGAGAG 59.124 52.381 1.14 0.00 0.00 3.20
37 38 1.423584 TTGTTGCTGTCAGGGAGAGA 58.576 50.000 1.14 0.00 0.00 3.10
38 39 1.423584 TGTTGCTGTCAGGGAGAGAA 58.576 50.000 1.14 0.00 0.00 2.87
39 40 1.768275 TGTTGCTGTCAGGGAGAGAAA 59.232 47.619 1.14 0.00 0.00 2.52
40 41 2.224378 TGTTGCTGTCAGGGAGAGAAAG 60.224 50.000 1.14 0.00 0.00 2.62
41 42 0.979665 TGCTGTCAGGGAGAGAAAGG 59.020 55.000 1.14 0.00 0.00 3.11
42 43 0.392327 GCTGTCAGGGAGAGAAAGGC 60.392 60.000 1.14 0.00 0.00 4.35
43 44 1.274712 CTGTCAGGGAGAGAAAGGCT 58.725 55.000 0.00 0.00 0.00 4.58
44 45 1.206849 CTGTCAGGGAGAGAAAGGCTC 59.793 57.143 0.00 0.00 44.29 4.70
45 46 1.270907 GTCAGGGAGAGAAAGGCTCA 58.729 55.000 0.00 0.00 46.45 4.26
46 47 1.625818 GTCAGGGAGAGAAAGGCTCAA 59.374 52.381 0.00 0.00 46.45 3.02
47 48 1.625818 TCAGGGAGAGAAAGGCTCAAC 59.374 52.381 0.00 0.00 46.45 3.18
48 49 1.627834 CAGGGAGAGAAAGGCTCAACT 59.372 52.381 0.00 0.00 46.45 3.16
49 50 2.834549 CAGGGAGAGAAAGGCTCAACTA 59.165 50.000 0.00 0.00 46.45 2.24
50 51 3.454082 CAGGGAGAGAAAGGCTCAACTAT 59.546 47.826 0.00 0.00 46.45 2.12
51 52 4.080638 CAGGGAGAGAAAGGCTCAACTATT 60.081 45.833 0.00 0.00 46.45 1.73
52 53 4.538089 AGGGAGAGAAAGGCTCAACTATTT 59.462 41.667 0.00 0.00 46.45 1.40
53 54 5.014649 AGGGAGAGAAAGGCTCAACTATTTT 59.985 40.000 0.00 0.00 46.45 1.82
54 55 5.124617 GGGAGAGAAAGGCTCAACTATTTTG 59.875 44.000 0.00 0.00 46.45 2.44
55 56 5.124617 GGAGAGAAAGGCTCAACTATTTTGG 59.875 44.000 0.00 0.00 46.45 3.28
56 57 5.880901 AGAGAAAGGCTCAACTATTTTGGA 58.119 37.500 0.00 0.00 46.45 3.53
57 58 5.707764 AGAGAAAGGCTCAACTATTTTGGAC 59.292 40.000 0.00 0.00 46.45 4.02
58 59 4.767409 AGAAAGGCTCAACTATTTTGGACC 59.233 41.667 0.00 0.00 0.00 4.46
59 60 3.806949 AGGCTCAACTATTTTGGACCA 57.193 42.857 0.00 0.00 0.00 4.02
60 61 4.112634 AGGCTCAACTATTTTGGACCAA 57.887 40.909 1.69 1.69 0.00 3.67
61 62 4.677182 AGGCTCAACTATTTTGGACCAAT 58.323 39.130 7.99 0.00 0.00 3.16
62 63 4.463891 AGGCTCAACTATTTTGGACCAATG 59.536 41.667 7.99 2.17 0.00 2.82
63 64 4.381932 GGCTCAACTATTTTGGACCAATGG 60.382 45.833 7.99 0.00 0.00 3.16
64 65 4.220602 GCTCAACTATTTTGGACCAATGGT 59.779 41.667 3.74 3.74 39.44 3.55
65 66 5.713025 CTCAACTATTTTGGACCAATGGTG 58.287 41.667 10.84 8.04 35.25 4.17
66 67 5.389520 TCAACTATTTTGGACCAATGGTGA 58.610 37.500 10.84 10.14 35.25 4.02
67 68 5.242838 TCAACTATTTTGGACCAATGGTGAC 59.757 40.000 10.84 2.81 35.25 3.67
81 82 3.510388 TGGTGACATAGAAAGAGCGAG 57.490 47.619 0.00 0.00 33.40 5.03
82 83 3.089284 TGGTGACATAGAAAGAGCGAGA 58.911 45.455 0.00 0.00 33.40 4.04
83 84 3.129462 TGGTGACATAGAAAGAGCGAGAG 59.871 47.826 0.00 0.00 33.40 3.20
84 85 3.378742 GGTGACATAGAAAGAGCGAGAGA 59.621 47.826 0.00 0.00 0.00 3.10
85 86 4.142359 GGTGACATAGAAAGAGCGAGAGAA 60.142 45.833 0.00 0.00 0.00 2.87
86 87 5.403246 GTGACATAGAAAGAGCGAGAGAAA 58.597 41.667 0.00 0.00 0.00 2.52
87 88 5.864474 GTGACATAGAAAGAGCGAGAGAAAA 59.136 40.000 0.00 0.00 0.00 2.29
88 89 6.034470 GTGACATAGAAAGAGCGAGAGAAAAG 59.966 42.308 0.00 0.00 0.00 2.27
89 90 5.415221 ACATAGAAAGAGCGAGAGAAAAGG 58.585 41.667 0.00 0.00 0.00 3.11
90 91 5.186021 ACATAGAAAGAGCGAGAGAAAAGGA 59.814 40.000 0.00 0.00 0.00 3.36
91 92 4.608948 AGAAAGAGCGAGAGAAAAGGAA 57.391 40.909 0.00 0.00 0.00 3.36
92 93 4.962155 AGAAAGAGCGAGAGAAAAGGAAA 58.038 39.130 0.00 0.00 0.00 3.13
93 94 5.555966 AGAAAGAGCGAGAGAAAAGGAAAT 58.444 37.500 0.00 0.00 0.00 2.17
94 95 6.000840 AGAAAGAGCGAGAGAAAAGGAAATT 58.999 36.000 0.00 0.00 0.00 1.82
95 96 5.871465 AAGAGCGAGAGAAAAGGAAATTC 57.129 39.130 0.00 0.00 0.00 2.17
96 97 4.899502 AGAGCGAGAGAAAAGGAAATTCA 58.100 39.130 0.00 0.00 0.00 2.57
97 98 4.934602 AGAGCGAGAGAAAAGGAAATTCAG 59.065 41.667 0.00 0.00 0.00 3.02
98 99 4.646572 AGCGAGAGAAAAGGAAATTCAGT 58.353 39.130 0.00 0.00 0.00 3.41
99 100 4.453819 AGCGAGAGAAAAGGAAATTCAGTG 59.546 41.667 0.00 0.00 0.00 3.66
100 101 4.716943 CGAGAGAAAAGGAAATTCAGTGC 58.283 43.478 0.00 0.00 0.00 4.40
101 102 4.214119 CGAGAGAAAAGGAAATTCAGTGCA 59.786 41.667 0.00 0.00 0.00 4.57
102 103 5.277974 CGAGAGAAAAGGAAATTCAGTGCAA 60.278 40.000 0.00 0.00 0.00 4.08
103 104 6.081872 AGAGAAAAGGAAATTCAGTGCAAG 57.918 37.500 0.00 0.00 0.00 4.01
104 105 5.829924 AGAGAAAAGGAAATTCAGTGCAAGA 59.170 36.000 0.00 0.00 0.00 3.02
105 106 6.492772 AGAGAAAAGGAAATTCAGTGCAAGAT 59.507 34.615 0.00 0.00 0.00 2.40
106 107 7.015001 AGAGAAAAGGAAATTCAGTGCAAGATT 59.985 33.333 0.00 0.00 0.00 2.40
107 108 6.927381 AGAAAAGGAAATTCAGTGCAAGATTG 59.073 34.615 0.00 0.00 0.00 2.67
108 109 6.409524 AAAGGAAATTCAGTGCAAGATTGA 57.590 33.333 0.00 0.00 0.00 2.57
109 110 6.409524 AAGGAAATTCAGTGCAAGATTGAA 57.590 33.333 0.00 0.00 35.52 2.69
110 111 6.022163 AGGAAATTCAGTGCAAGATTGAAG 57.978 37.500 0.00 0.00 34.64 3.02
111 112 5.771666 AGGAAATTCAGTGCAAGATTGAAGA 59.228 36.000 0.00 0.00 34.64 2.87
112 113 6.266103 AGGAAATTCAGTGCAAGATTGAAGAA 59.734 34.615 0.00 0.00 34.64 2.52
113 114 6.925165 GGAAATTCAGTGCAAGATTGAAGAAA 59.075 34.615 0.00 0.00 34.64 2.52
114 115 7.095899 GGAAATTCAGTGCAAGATTGAAGAAAC 60.096 37.037 0.00 0.00 34.64 2.78
115 116 6.645790 ATTCAGTGCAAGATTGAAGAAACT 57.354 33.333 0.00 0.00 34.64 2.66
116 117 7.750229 ATTCAGTGCAAGATTGAAGAAACTA 57.250 32.000 0.00 0.00 34.64 2.24
117 118 7.750229 TTCAGTGCAAGATTGAAGAAACTAT 57.250 32.000 0.00 0.00 0.00 2.12
118 119 7.750229 TCAGTGCAAGATTGAAGAAACTATT 57.250 32.000 0.00 0.00 0.00 1.73
119 120 7.587629 TCAGTGCAAGATTGAAGAAACTATTG 58.412 34.615 0.00 0.00 0.00 1.90
120 121 6.307318 CAGTGCAAGATTGAAGAAACTATTGC 59.693 38.462 0.00 0.00 41.54 3.56
121 122 5.574443 GTGCAAGATTGAAGAAACTATTGCC 59.426 40.000 0.00 0.00 40.71 4.52
122 123 5.243507 TGCAAGATTGAAGAAACTATTGCCA 59.756 36.000 0.00 0.00 40.71 4.92
123 124 6.071221 TGCAAGATTGAAGAAACTATTGCCAT 60.071 34.615 0.00 0.00 40.71 4.40
124 125 6.255020 GCAAGATTGAAGAAACTATTGCCATG 59.745 38.462 0.00 0.00 36.64 3.66
125 126 7.318141 CAAGATTGAAGAAACTATTGCCATGT 58.682 34.615 0.00 0.00 0.00 3.21
126 127 7.472334 AGATTGAAGAAACTATTGCCATGTT 57.528 32.000 0.00 0.00 0.00 2.71
127 128 7.318141 AGATTGAAGAAACTATTGCCATGTTG 58.682 34.615 0.00 0.00 0.00 3.33
128 129 5.389859 TGAAGAAACTATTGCCATGTTGG 57.610 39.130 0.00 0.00 41.55 3.77
129 130 5.076182 TGAAGAAACTATTGCCATGTTGGA 58.924 37.500 0.00 0.00 40.96 3.53
130 131 5.048083 TGAAGAAACTATTGCCATGTTGGAC 60.048 40.000 0.00 0.00 40.96 4.02
131 132 3.763897 AGAAACTATTGCCATGTTGGACC 59.236 43.478 0.00 0.00 40.96 4.46
132 133 2.897271 ACTATTGCCATGTTGGACCA 57.103 45.000 0.00 0.00 40.96 4.02
133 134 2.446435 ACTATTGCCATGTTGGACCAC 58.554 47.619 0.00 0.00 40.96 4.16
134 135 2.224992 ACTATTGCCATGTTGGACCACA 60.225 45.455 0.00 0.00 40.96 4.17
135 136 1.941377 ATTGCCATGTTGGACCACAT 58.059 45.000 0.00 0.00 40.96 3.21
136 137 1.255882 TTGCCATGTTGGACCACATC 58.744 50.000 0.00 0.00 40.96 3.06
137 138 0.112025 TGCCATGTTGGACCACATCA 59.888 50.000 0.00 0.00 40.96 3.07
138 139 1.272592 TGCCATGTTGGACCACATCAT 60.273 47.619 0.00 0.00 40.96 2.45
139 140 1.406539 GCCATGTTGGACCACATCATC 59.593 52.381 0.00 0.00 40.96 2.92
140 141 2.725637 CCATGTTGGACCACATCATCA 58.274 47.619 0.00 0.00 40.96 3.07
141 142 3.090790 CCATGTTGGACCACATCATCAA 58.909 45.455 0.00 0.00 40.96 2.57
142 143 3.510753 CCATGTTGGACCACATCATCAAA 59.489 43.478 0.00 0.00 40.96 2.69
143 144 4.160814 CCATGTTGGACCACATCATCAAAT 59.839 41.667 0.00 0.00 40.96 2.32
144 145 5.360429 CCATGTTGGACCACATCATCAAATA 59.640 40.000 0.00 0.00 40.96 1.40
145 146 6.127394 CCATGTTGGACCACATCATCAAATAA 60.127 38.462 0.00 0.00 40.96 1.40
146 147 6.907853 TGTTGGACCACATCATCAAATAAA 57.092 33.333 0.00 0.00 0.00 1.40
147 148 6.686630 TGTTGGACCACATCATCAAATAAAC 58.313 36.000 0.00 0.00 0.00 2.01
148 149 5.913137 TGGACCACATCATCAAATAAACC 57.087 39.130 0.00 0.00 0.00 3.27
149 150 4.397730 TGGACCACATCATCAAATAAACCG 59.602 41.667 0.00 0.00 0.00 4.44
150 151 4.351192 GACCACATCATCAAATAAACCGC 58.649 43.478 0.00 0.00 0.00 5.68
151 152 4.016444 ACCACATCATCAAATAAACCGCT 58.984 39.130 0.00 0.00 0.00 5.52
152 153 4.462483 ACCACATCATCAAATAAACCGCTT 59.538 37.500 0.00 0.00 0.00 4.68
153 154 5.036737 CCACATCATCAAATAAACCGCTTC 58.963 41.667 0.00 0.00 0.00 3.86
154 155 5.392919 CCACATCATCAAATAAACCGCTTCA 60.393 40.000 0.00 0.00 0.00 3.02
155 156 5.740569 CACATCATCAAATAAACCGCTTCAG 59.259 40.000 0.00 0.00 0.00 3.02
156 157 5.415701 ACATCATCAAATAAACCGCTTCAGT 59.584 36.000 0.00 0.00 0.00 3.41
157 158 5.957842 TCATCAAATAAACCGCTTCAGTT 57.042 34.783 0.00 0.00 0.00 3.16
158 159 5.938322 TCATCAAATAAACCGCTTCAGTTC 58.062 37.500 0.00 0.00 0.00 3.01
159 160 5.471797 TCATCAAATAAACCGCTTCAGTTCA 59.528 36.000 0.00 0.00 0.00 3.18
160 161 5.356882 TCAAATAAACCGCTTCAGTTCAG 57.643 39.130 0.00 0.00 0.00 3.02
161 162 4.215399 TCAAATAAACCGCTTCAGTTCAGG 59.785 41.667 0.00 0.00 0.00 3.86
162 163 2.178912 TAAACCGCTTCAGTTCAGGG 57.821 50.000 0.00 0.00 0.00 4.45
164 165 1.415672 AACCGCTTCAGTTCAGGGGA 61.416 55.000 9.81 0.00 45.30 4.81
165 166 1.078848 CCGCTTCAGTTCAGGGGAG 60.079 63.158 0.00 0.00 45.30 4.30
166 167 1.078848 CGCTTCAGTTCAGGGGAGG 60.079 63.158 0.00 0.00 0.00 4.30
167 168 1.544825 CGCTTCAGTTCAGGGGAGGA 61.545 60.000 0.00 0.00 0.00 3.71
168 169 0.035915 GCTTCAGTTCAGGGGAGGAC 60.036 60.000 0.00 0.00 0.00 3.85
169 170 0.615850 CTTCAGTTCAGGGGAGGACC 59.384 60.000 0.00 0.00 39.11 4.46
170 171 0.104672 TTCAGTTCAGGGGAGGACCA 60.105 55.000 0.00 0.00 42.91 4.02
171 172 0.104672 TCAGTTCAGGGGAGGACCAA 60.105 55.000 0.00 0.00 42.91 3.67
172 173 0.771127 CAGTTCAGGGGAGGACCAAA 59.229 55.000 0.00 0.00 42.91 3.28
173 174 0.771755 AGTTCAGGGGAGGACCAAAC 59.228 55.000 0.00 0.00 42.91 2.93
174 175 0.476771 GTTCAGGGGAGGACCAAACA 59.523 55.000 0.00 0.00 42.91 2.83
175 176 1.075536 GTTCAGGGGAGGACCAAACAT 59.924 52.381 0.00 0.00 42.91 2.71
176 177 0.698238 TCAGGGGAGGACCAAACATG 59.302 55.000 0.00 0.00 42.91 3.21
177 178 0.405585 CAGGGGAGGACCAAACATGT 59.594 55.000 0.00 0.00 42.91 3.21
178 179 0.698818 AGGGGAGGACCAAACATGTC 59.301 55.000 0.00 0.00 42.91 3.06
179 180 0.698818 GGGGAGGACCAAACATGTCT 59.301 55.000 0.00 0.00 42.91 3.41
180 181 1.614317 GGGGAGGACCAAACATGTCTG 60.614 57.143 0.00 0.00 42.91 3.51
181 182 1.614317 GGGAGGACCAAACATGTCTGG 60.614 57.143 16.94 16.94 39.85 3.86
182 183 1.168714 GAGGACCAAACATGTCTGGC 58.831 55.000 18.43 10.66 36.03 4.85
183 184 0.773644 AGGACCAAACATGTCTGGCT 59.226 50.000 18.43 5.32 36.03 4.75
184 185 1.145738 AGGACCAAACATGTCTGGCTT 59.854 47.619 18.43 4.89 36.03 4.35
185 186 2.375174 AGGACCAAACATGTCTGGCTTA 59.625 45.455 18.43 0.00 36.03 3.09
186 187 3.153919 GGACCAAACATGTCTGGCTTAA 58.846 45.455 18.43 0.00 36.03 1.85
187 188 3.191371 GGACCAAACATGTCTGGCTTAAG 59.809 47.826 18.43 0.00 36.03 1.85
188 189 4.072131 GACCAAACATGTCTGGCTTAAGA 58.928 43.478 18.43 0.00 36.03 2.10
189 190 4.469657 ACCAAACATGTCTGGCTTAAGAA 58.530 39.130 18.43 0.00 36.03 2.52
190 191 4.520492 ACCAAACATGTCTGGCTTAAGAAG 59.480 41.667 18.43 2.91 36.03 2.85
191 192 4.520492 CCAAACATGTCTGGCTTAAGAAGT 59.480 41.667 4.99 0.00 0.00 3.01
192 193 5.010012 CCAAACATGTCTGGCTTAAGAAGTT 59.990 40.000 4.99 0.00 0.00 2.66
193 194 6.206634 CCAAACATGTCTGGCTTAAGAAGTTA 59.793 38.462 4.99 0.00 0.00 2.24
199 200 6.650120 TGTCTGGCTTAAGAAGTTATAAGGG 58.350 40.000 6.67 0.00 31.28 3.95
211 212 5.959618 AGTTATAAGGGTGCAAGTTGTTC 57.040 39.130 4.48 0.00 0.00 3.18
212 213 5.381757 AGTTATAAGGGTGCAAGTTGTTCA 58.618 37.500 4.48 0.00 0.00 3.18
214 215 6.493458 AGTTATAAGGGTGCAAGTTGTTCAAT 59.507 34.615 4.48 0.00 0.00 2.57
264 265 3.485463 TTGTGGTTAGTTGAGGGACAG 57.515 47.619 0.00 0.00 0.00 3.51
316 323 1.739067 GGGGGAAACGAAGTGAGATG 58.261 55.000 0.00 0.00 45.00 2.90
356 1949 1.997669 ACGAGAGACTCCATTTTCGC 58.002 50.000 10.09 0.00 0.00 4.70
555 2162 0.251916 TCGCTGGGTTCGAATCCATT 59.748 50.000 29.73 0.00 38.80 3.16
587 2194 3.851098 ACTCATTAAGCAACTCGAGGAC 58.149 45.455 18.41 5.41 0.00 3.85
608 2217 6.481644 AGGACGAGAGAAATGATTTAAGATGC 59.518 38.462 0.00 0.00 0.00 3.91
671 2280 1.296392 CCATGAGAACTGGCGTCCA 59.704 57.895 0.00 0.00 0.00 4.02
709 2318 5.636543 GGATTCTTCTTTGCCAAAGTTGATG 59.363 40.000 16.33 1.56 39.52 3.07
743 2354 2.945398 GATGTCGCCGTGGAGAGCTC 62.945 65.000 5.27 5.27 0.00 4.09
762 2373 2.261671 CCGTTCAGACCTGACCCG 59.738 66.667 0.00 5.45 39.66 5.28
765 2376 3.319198 TTCAGACCTGACCCGCCC 61.319 66.667 0.00 0.00 39.66 6.13
782 2393 3.795561 GCCCGACGAAGAATCAATATG 57.204 47.619 0.00 0.00 0.00 1.78
783 2394 2.096218 GCCCGACGAAGAATCAATATGC 60.096 50.000 0.00 0.00 0.00 3.14
784 2395 3.393800 CCCGACGAAGAATCAATATGCT 58.606 45.455 0.00 0.00 0.00 3.79
785 2396 4.556233 CCCGACGAAGAATCAATATGCTA 58.444 43.478 0.00 0.00 0.00 3.49
786 2397 4.386049 CCCGACGAAGAATCAATATGCTAC 59.614 45.833 0.00 0.00 0.00 3.58
787 2398 5.223382 CCGACGAAGAATCAATATGCTACT 58.777 41.667 0.00 0.00 0.00 2.57
788 2399 5.117745 CCGACGAAGAATCAATATGCTACTG 59.882 44.000 0.00 0.00 0.00 2.74
789 2400 5.687730 CGACGAAGAATCAATATGCTACTGT 59.312 40.000 0.00 0.00 0.00 3.55
790 2401 6.856426 CGACGAAGAATCAATATGCTACTGTA 59.144 38.462 0.00 0.00 0.00 2.74
791 2402 7.060059 CGACGAAGAATCAATATGCTACTGTAG 59.940 40.741 10.48 10.48 0.00 2.74
792 2403 7.717568 ACGAAGAATCAATATGCTACTGTAGT 58.282 34.615 15.71 0.33 0.00 2.73
794 2405 8.483218 CGAAGAATCAATATGCTACTGTAGTTG 58.517 37.037 15.71 11.81 0.00 3.16
795 2406 7.721286 AGAATCAATATGCTACTGTAGTTGC 57.279 36.000 15.71 10.76 44.83 4.17
803 2414 4.766404 GCTACTGTAGTTGCAACCAATT 57.234 40.909 25.62 10.07 44.19 2.32
804 2415 5.121221 GCTACTGTAGTTGCAACCAATTT 57.879 39.130 25.62 9.68 44.19 1.82
805 2416 6.249035 GCTACTGTAGTTGCAACCAATTTA 57.751 37.500 25.62 8.62 44.19 1.40
806 2417 6.084277 GCTACTGTAGTTGCAACCAATTTAC 58.916 40.000 25.62 19.69 44.19 2.01
807 2418 6.072673 GCTACTGTAGTTGCAACCAATTTACT 60.073 38.462 25.62 7.31 44.19 2.24
808 2419 7.118680 GCTACTGTAGTTGCAACCAATTTACTA 59.881 37.037 25.62 6.25 44.19 1.82
809 2420 7.996098 ACTGTAGTTGCAACCAATTTACTAT 57.004 32.000 25.62 10.34 32.75 2.12
810 2421 8.404107 ACTGTAGTTGCAACCAATTTACTATT 57.596 30.769 25.62 5.42 32.75 1.73
811 2422 8.512138 ACTGTAGTTGCAACCAATTTACTATTC 58.488 33.333 25.62 2.24 32.75 1.75
812 2423 7.822658 TGTAGTTGCAACCAATTTACTATTCC 58.177 34.615 25.62 0.00 32.75 3.01
813 2424 7.668052 TGTAGTTGCAACCAATTTACTATTCCT 59.332 33.333 25.62 4.11 32.75 3.36
814 2425 9.169592 GTAGTTGCAACCAATTTACTATTCCTA 57.830 33.333 25.62 3.12 32.75 2.94
815 2426 8.823220 AGTTGCAACCAATTTACTATTCCTAT 57.177 30.769 25.62 0.00 32.75 2.57
816 2427 9.914834 AGTTGCAACCAATTTACTATTCCTATA 57.085 29.630 25.62 0.00 32.75 1.31
832 2443 7.716799 ATTCCTATATAGTCTGAAGGCTGAG 57.283 40.000 8.92 0.00 0.00 3.35
856 2467 2.613595 CGAGCTGCCATTGTTAATGCTA 59.386 45.455 0.00 0.00 37.57 3.49
888 2499 1.377229 GGTCAAACATCCCGGTCCA 59.623 57.895 0.00 0.00 0.00 4.02
1014 2641 3.845259 TAGATGGACGCGGTGCCC 61.845 66.667 12.47 6.61 0.00 5.36
1113 2740 1.844003 CAACGACTTCACCGTCACG 59.156 57.895 0.00 0.00 39.57 4.35
1221 2848 4.308458 CCCGTGCTCACCGTCCAA 62.308 66.667 0.00 0.00 0.00 3.53
1253 2880 2.037381 GTCTTCTTCTCCCCTTTCGTGT 59.963 50.000 0.00 0.00 0.00 4.49
1254 2881 2.299297 TCTTCTTCTCCCCTTTCGTGTC 59.701 50.000 0.00 0.00 0.00 3.67
1255 2882 0.601558 TCTTCTCCCCTTTCGTGTCG 59.398 55.000 0.00 0.00 0.00 4.35
1256 2883 1.005394 TTCTCCCCTTTCGTGTCGC 60.005 57.895 0.00 0.00 0.00 5.19
1257 2884 2.434359 CTCCCCTTTCGTGTCGCC 60.434 66.667 0.00 0.00 0.00 5.54
1258 2885 3.952628 CTCCCCTTTCGTGTCGCCC 62.953 68.421 0.00 0.00 0.00 6.13
1596 3223 3.606662 ATCGGCAGGATCGACCGG 61.607 66.667 16.62 0.00 46.87 5.28
1635 3262 2.670934 CTGCTGGGCAAGAACGCT 60.671 61.111 0.00 0.00 38.41 5.07
1671 3298 4.201679 CCCGGCATCGACTACGCA 62.202 66.667 0.00 0.00 39.00 5.24
1724 3351 2.092753 AGATGCACTACCAATGACCAGG 60.093 50.000 0.00 0.00 0.00 4.45
1729 3356 1.279271 ACTACCAATGACCAGGACTGC 59.721 52.381 0.00 0.00 0.00 4.40
1733 3360 2.173519 CCAATGACCAGGACTGCAATT 58.826 47.619 0.00 0.00 0.00 2.32
1744 3371 3.575256 AGGACTGCAATTCAAATGCTTGA 59.425 39.130 0.00 0.00 44.14 3.02
1759 3389 3.554934 TGCTTGAAGTTGGTGTCTTCAT 58.445 40.909 8.77 0.00 46.59 2.57
1760 3390 3.565482 TGCTTGAAGTTGGTGTCTTCATC 59.435 43.478 8.77 5.70 46.59 2.92
1761 3391 3.364366 GCTTGAAGTTGGTGTCTTCATCG 60.364 47.826 8.77 5.56 46.59 3.84
1762 3392 2.766313 TGAAGTTGGTGTCTTCATCGG 58.234 47.619 4.56 0.00 43.88 4.18
1764 3394 2.457366 AGTTGGTGTCTTCATCGGTC 57.543 50.000 0.00 0.00 0.00 4.79
1795 3426 1.751563 GGAGGCTCCTATGGACTGC 59.248 63.158 26.44 0.00 32.53 4.40
1801 3432 1.757118 GCTCCTATGGACTGCTGTGTA 59.243 52.381 0.00 0.00 0.00 2.90
1806 3437 2.698855 ATGGACTGCTGTGTATGTCC 57.301 50.000 0.00 0.00 46.53 4.02
1858 3499 6.092670 GCTCTGCTTTTGAGTTGATACATGTA 59.907 38.462 8.27 8.27 34.30 2.29
1865 3506 2.987149 GAGTTGATACATGTATCGGCCG 59.013 50.000 31.03 22.12 43.64 6.13
1867 3508 2.432206 TGATACATGTATCGGCCGTG 57.568 50.000 31.03 18.26 43.64 4.94
1891 3532 2.101582 AGCCTGATATGACGTTGAGGTC 59.898 50.000 0.00 0.00 37.45 3.85
1934 3575 1.469703 TGATCCGCTTCAGCAATGTTG 59.530 47.619 0.00 0.00 42.21 3.33
1974 3615 1.669795 GCCTTTGCTTGGTCCAATTCG 60.670 52.381 4.34 0.00 33.53 3.34
1976 3617 0.965439 TTTGCTTGGTCCAATTCGGG 59.035 50.000 4.34 0.00 34.36 5.14
2001 3642 1.514003 TTTACGGCATCTTCAACGCA 58.486 45.000 0.00 0.00 0.00 5.24
2002 3643 1.514003 TTACGGCATCTTCAACGCAA 58.486 45.000 0.00 0.00 0.00 4.85
2009 3650 2.227865 GCATCTTCAACGCAAACCCTTA 59.772 45.455 0.00 0.00 0.00 2.69
2014 3655 1.334243 TCAACGCAAACCCTTAAACCG 59.666 47.619 0.00 0.00 0.00 4.44
2025 3666 0.707822 CTTAAACCGTGCGCATTTGC 59.292 50.000 15.91 0.00 37.78 3.68
2027 3668 2.479412 TAAACCGTGCGCATTTGCCC 62.479 55.000 15.91 0.00 37.91 5.36
2035 3676 2.126502 GCATTTGCCCGAACCACG 60.127 61.111 0.00 0.00 42.18 4.94
2053 3694 1.757574 CGTGGTTCGAACGTGTTCTA 58.242 50.000 21.34 0.00 42.86 2.10
2054 3695 2.322161 CGTGGTTCGAACGTGTTCTAT 58.678 47.619 21.34 0.00 42.86 1.98
2067 3708 3.679917 CGTGTTCTATCATCCAAGCAGGT 60.680 47.826 0.00 0.00 39.02 4.00
2081 3722 1.618640 GCAGGTTTCACGAGCTCGAC 61.619 60.000 40.58 27.11 43.02 4.20
2085 3726 2.558286 TTTCACGAGCTCGACGGGT 61.558 57.895 40.58 17.00 43.02 5.28
2089 3730 4.717629 CGAGCTCGACGGGTGCAA 62.718 66.667 32.06 0.00 43.02 4.08
2093 3734 2.383527 GCTCGACGGGTGCAAAGAG 61.384 63.158 0.00 0.00 35.27 2.85
2103 3744 4.379174 GCAAAGAGCAAGGACGGA 57.621 55.556 0.00 0.00 44.79 4.69
2105 3746 1.301677 GCAAAGAGCAAGGACGGAGG 61.302 60.000 0.00 0.00 44.79 4.30
2119 3760 3.063084 GAGGTGACCGGAGCGAGT 61.063 66.667 9.46 0.00 0.00 4.18
2123 3764 2.362503 TGACCGGAGCGAGTGGAT 60.363 61.111 9.46 0.00 0.00 3.41
2150 3791 4.162690 GGATCCGCGGCCAACTCT 62.163 66.667 23.51 0.00 0.00 3.24
2161 3802 1.826024 CCAACTCTGGGGAGGATCG 59.174 63.158 0.00 0.00 43.46 3.69
2204 3845 3.081554 CTGCACTAGCTGGGGGTT 58.918 61.111 0.00 0.00 42.74 4.11
2206 3847 1.841302 CTGCACTAGCTGGGGGTTCA 61.841 60.000 0.00 0.00 42.74 3.18
2214 3855 0.321346 GCTGGGGGTTCAATTTGTGG 59.679 55.000 0.00 0.00 0.00 4.17
2216 3857 1.124477 TGGGGGTTCAATTTGTGGCC 61.124 55.000 0.00 0.00 0.00 5.36
2221 3862 1.270252 GGTTCAATTTGTGGCCAGTGG 60.270 52.381 5.11 4.20 0.00 4.00
2223 3864 2.079170 TCAATTTGTGGCCAGTGGAA 57.921 45.000 15.20 0.00 0.00 3.53
2225 3866 2.562298 TCAATTTGTGGCCAGTGGAATC 59.438 45.455 15.20 1.72 0.00 2.52
2228 3869 0.321564 TTGTGGCCAGTGGAATCGAG 60.322 55.000 15.20 0.00 0.00 4.04
2230 3871 1.021390 GTGGCCAGTGGAATCGAGTG 61.021 60.000 15.20 0.00 0.00 3.51
2231 3872 1.296715 GGCCAGTGGAATCGAGTGT 59.703 57.895 15.20 0.00 0.00 3.55
2233 3874 1.639298 GCCAGTGGAATCGAGTGTGC 61.639 60.000 15.20 0.00 0.00 4.57
2235 3876 1.354040 CAGTGGAATCGAGTGTGCTC 58.646 55.000 0.00 0.00 38.35 4.26
2256 3897 2.183300 CGAACGGCTCGGGAATGA 59.817 61.111 0.00 0.00 44.20 2.57
2257 3898 1.878522 CGAACGGCTCGGGAATGAG 60.879 63.158 0.00 0.00 44.20 2.90
2265 3906 3.005472 CGGCTCGGGAATGAGTCTATTTA 59.995 47.826 0.00 0.00 38.46 1.40
2270 3911 7.254852 GCTCGGGAATGAGTCTATTTATAGAG 58.745 42.308 0.00 0.00 39.87 2.43
2271 3912 7.121463 GCTCGGGAATGAGTCTATTTATAGAGA 59.879 40.741 0.00 0.00 39.87 3.10
2280 3921 6.557568 AGTCTATTTATAGAGAGAGGGGTGG 58.442 44.000 0.00 0.00 39.87 4.61
2282 3923 2.400467 TTATAGAGAGAGGGGTGGCC 57.600 55.000 0.00 0.00 0.00 5.36
2283 3924 0.112606 TATAGAGAGAGGGGTGGCCG 59.887 60.000 0.00 0.00 0.00 6.13
2284 3925 1.656092 ATAGAGAGAGGGGTGGCCGA 61.656 60.000 0.00 0.00 0.00 5.54
2287 3928 4.452733 GAGAGGGGTGGCCGAACG 62.453 72.222 0.00 0.00 0.00 3.95
2298 3939 4.421479 CCGAACGCTGAGCTCCGT 62.421 66.667 12.15 11.84 39.70 4.69
2313 3954 2.182030 CGTCGGAGAAGGGCTGTC 59.818 66.667 0.00 0.00 39.69 3.51
2320 3961 2.358247 GAAGGGCTGTCGGCGAAA 60.358 61.111 12.92 4.95 42.94 3.46
2321 3962 1.745489 GAAGGGCTGTCGGCGAAAT 60.745 57.895 12.92 0.00 42.94 2.17
2322 3963 1.706287 GAAGGGCTGTCGGCGAAATC 61.706 60.000 12.92 0.30 42.94 2.17
2332 3973 0.249238 CGGCGAAATCAGAGGGAGAG 60.249 60.000 0.00 0.00 0.00 3.20
2342 3983 4.851214 AGGGAGAGGAGCTCGGGC 62.851 72.222 7.83 0.00 44.91 6.13
2354 3995 1.975327 CTCGGGCAAGTCTTGGAGA 59.025 57.895 14.40 0.00 0.00 3.71
2355 3996 0.108424 CTCGGGCAAGTCTTGGAGAG 60.108 60.000 14.40 2.79 0.00 3.20
2363 4004 3.368948 GCAAGTCTTGGAGAGGAAGTAGG 60.369 52.174 14.40 0.00 0.00 3.18
2364 4005 2.462723 AGTCTTGGAGAGGAAGTAGGC 58.537 52.381 0.00 0.00 0.00 3.93
2365 4006 1.135333 GTCTTGGAGAGGAAGTAGGCG 59.865 57.143 0.00 0.00 0.00 5.52
2367 4008 1.407258 CTTGGAGAGGAAGTAGGCGAG 59.593 57.143 0.00 0.00 0.00 5.03
2369 4010 0.753848 GGAGAGGAAGTAGGCGAGCT 60.754 60.000 0.00 0.00 0.00 4.09
2371 4012 0.753848 AGAGGAAGTAGGCGAGCTCC 60.754 60.000 8.47 0.47 0.00 4.70
2417 4058 4.769047 TGCAGCGCACTAAGTGAA 57.231 50.000 11.47 0.00 35.23 3.18
2423 4064 0.670546 GCGCACTAAGTGAAGCAGGA 60.671 55.000 0.30 0.00 38.13 3.86
2425 4066 1.082690 GCACTAAGTGAAGCAGGAGC 58.917 55.000 0.00 0.00 36.99 4.70
2431 4072 4.704833 TGAAGCAGGAGCCGCACC 62.705 66.667 0.00 0.00 43.56 5.01
2432 4073 4.704833 GAAGCAGGAGCCGCACCA 62.705 66.667 9.69 0.00 43.56 4.17
2433 4074 4.711949 AAGCAGGAGCCGCACCAG 62.712 66.667 9.69 2.07 43.56 4.00
2445 4086 2.959357 GCACCAGCGCTCACTGTTC 61.959 63.158 7.13 0.00 35.83 3.18
2447 4088 3.114616 CCAGCGCTCACTGTTCCG 61.115 66.667 7.13 0.00 35.83 4.30
2451 4092 4.680237 CGCTCACTGTTCCGCCCA 62.680 66.667 0.00 0.00 0.00 5.36
2454 4095 1.972198 CTCACTGTTCCGCCCAGTA 59.028 57.895 0.00 0.00 41.10 2.74
2465 4112 4.814294 CCCAGTAGTGCCGCGTCC 62.814 72.222 4.92 0.00 0.00 4.79
2486 4133 3.044305 GTGCTGCCTGTCGGTGTC 61.044 66.667 0.00 0.00 0.00 3.67
2500 4147 4.414956 TGTCGGGGAGGGGCAGAT 62.415 66.667 0.00 0.00 0.00 2.90
2501 4148 3.551407 GTCGGGGAGGGGCAGATC 61.551 72.222 0.00 0.00 0.00 2.75
2502 4149 4.088351 TCGGGGAGGGGCAGATCA 62.088 66.667 0.00 0.00 0.00 2.92
2515 4162 0.393537 CAGATCAAGGCCAGGTGGAC 60.394 60.000 5.01 0.00 46.16 4.02
2543 4190 4.767255 GTGCTGAGTGGCGGAGGG 62.767 72.222 0.00 0.00 34.52 4.30
2549 4196 3.672295 GAGTGGCGGAGGGAAGCTG 62.672 68.421 0.00 0.00 0.00 4.24
2555 4202 4.785453 GGAGGGAAGCTGCGGTGG 62.785 72.222 0.00 0.00 0.00 4.61
2568 4215 4.899239 GGTGGCGCGAGGAGGATG 62.899 72.222 12.10 0.00 0.00 3.51
2574 4221 2.107141 GCGAGGAGGATGAACGGG 59.893 66.667 0.00 0.00 0.00 5.28
2577 4224 3.447025 GAGGAGGATGAACGGGCGG 62.447 68.421 0.00 0.00 0.00 6.13
2598 4245 4.247380 CAGAGAGCCCCGATGCCC 62.247 72.222 0.00 0.00 0.00 5.36
2620 4267 2.054840 CGCGTCGAATGCATGTCG 60.055 61.111 18.95 18.95 39.88 4.35
2628 4275 2.094442 TCGAATGCATGTCGAACACCTA 60.094 45.455 22.80 6.87 44.10 3.08
2632 4279 0.721718 GCATGTCGAACACCTAGCAC 59.278 55.000 0.00 0.00 0.00 4.40
2637 4284 1.741770 CGAACACCTAGCACCCAGC 60.742 63.158 0.00 0.00 46.19 4.85
2656 4303 2.028484 TGGTCACCGCGTTCACTC 59.972 61.111 4.92 0.00 0.00 3.51
2705 4352 1.927895 CCATGTCTGGCGAGTAGTTC 58.072 55.000 0.00 0.00 35.23 3.01
2706 4353 1.471676 CCATGTCTGGCGAGTAGTTCC 60.472 57.143 0.00 0.00 35.23 3.62
2707 4354 1.478510 CATGTCTGGCGAGTAGTTCCT 59.521 52.381 0.00 0.00 0.00 3.36
2708 4355 1.629043 TGTCTGGCGAGTAGTTCCTT 58.371 50.000 0.00 0.00 0.00 3.36
2709 4356 1.544691 TGTCTGGCGAGTAGTTCCTTC 59.455 52.381 0.00 0.00 0.00 3.46
2710 4357 1.544691 GTCTGGCGAGTAGTTCCTTCA 59.455 52.381 0.00 0.00 0.00 3.02
2711 4358 2.029290 GTCTGGCGAGTAGTTCCTTCAA 60.029 50.000 0.00 0.00 0.00 2.69
2712 4359 2.029290 TCTGGCGAGTAGTTCCTTCAAC 60.029 50.000 0.00 0.00 34.86 3.18
2713 4360 1.336517 TGGCGAGTAGTTCCTTCAACG 60.337 52.381 0.00 0.00 40.32 4.10
2714 4361 1.336609 GGCGAGTAGTTCCTTCAACGT 60.337 52.381 0.00 0.00 40.32 3.99
2715 4362 1.719780 GCGAGTAGTTCCTTCAACGTG 59.280 52.381 0.00 0.00 40.32 4.49
2716 4363 2.325761 CGAGTAGTTCCTTCAACGTGG 58.674 52.381 0.00 0.00 40.32 4.94
2717 4364 2.685100 GAGTAGTTCCTTCAACGTGGG 58.315 52.381 0.00 0.00 40.32 4.61
2718 4365 1.346722 AGTAGTTCCTTCAACGTGGGG 59.653 52.381 0.00 0.00 40.32 4.96
2719 4366 0.035739 TAGTTCCTTCAACGTGGGGC 59.964 55.000 0.00 0.00 40.32 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.288030 ACAAACTACGTGTCCTTCTCGG 60.288 50.000 0.00 0.00 37.36 4.63
1 2 3.009301 ACAAACTACGTGTCCTTCTCG 57.991 47.619 0.00 0.00 38.71 4.04
2 3 3.059800 GCAACAAACTACGTGTCCTTCTC 60.060 47.826 0.00 0.00 0.00 2.87
3 4 2.870411 GCAACAAACTACGTGTCCTTCT 59.130 45.455 0.00 0.00 0.00 2.85
4 5 2.870411 AGCAACAAACTACGTGTCCTTC 59.130 45.455 0.00 0.00 0.00 3.46
5 6 2.612212 CAGCAACAAACTACGTGTCCTT 59.388 45.455 0.00 0.00 0.00 3.36
6 7 2.210116 CAGCAACAAACTACGTGTCCT 58.790 47.619 0.00 0.00 0.00 3.85
7 8 1.937899 ACAGCAACAAACTACGTGTCC 59.062 47.619 0.00 0.00 0.00 4.02
8 9 2.605818 TGACAGCAACAAACTACGTGTC 59.394 45.455 0.00 0.00 34.68 3.67
9 10 2.607635 CTGACAGCAACAAACTACGTGT 59.392 45.455 0.00 0.00 0.00 4.49
10 11 2.032894 CCTGACAGCAACAAACTACGTG 60.033 50.000 0.00 0.00 0.00 4.49
11 12 2.210116 CCTGACAGCAACAAACTACGT 58.790 47.619 0.00 0.00 0.00 3.57
12 13 1.531149 CCCTGACAGCAACAAACTACG 59.469 52.381 0.00 0.00 0.00 3.51
13 14 2.808543 CTCCCTGACAGCAACAAACTAC 59.191 50.000 0.00 0.00 0.00 2.73
14 15 2.703536 TCTCCCTGACAGCAACAAACTA 59.296 45.455 0.00 0.00 0.00 2.24
15 16 1.490490 TCTCCCTGACAGCAACAAACT 59.510 47.619 0.00 0.00 0.00 2.66
16 17 1.876156 CTCTCCCTGACAGCAACAAAC 59.124 52.381 0.00 0.00 0.00 2.93
17 18 1.768275 TCTCTCCCTGACAGCAACAAA 59.232 47.619 0.00 0.00 0.00 2.83
18 19 1.423584 TCTCTCCCTGACAGCAACAA 58.576 50.000 0.00 0.00 0.00 2.83
19 20 1.423584 TTCTCTCCCTGACAGCAACA 58.576 50.000 0.00 0.00 0.00 3.33
20 21 2.421619 CTTTCTCTCCCTGACAGCAAC 58.578 52.381 0.00 0.00 0.00 4.17
21 22 1.349026 CCTTTCTCTCCCTGACAGCAA 59.651 52.381 0.00 0.00 0.00 3.91
22 23 0.979665 CCTTTCTCTCCCTGACAGCA 59.020 55.000 0.00 0.00 0.00 4.41
23 24 0.392327 GCCTTTCTCTCCCTGACAGC 60.392 60.000 0.00 0.00 0.00 4.40
24 25 1.206849 GAGCCTTTCTCTCCCTGACAG 59.793 57.143 0.00 0.00 38.78 3.51
25 26 1.270907 GAGCCTTTCTCTCCCTGACA 58.729 55.000 0.00 0.00 38.78 3.58
26 27 1.270907 TGAGCCTTTCTCTCCCTGAC 58.729 55.000 0.00 0.00 42.38 3.51
27 28 1.625818 GTTGAGCCTTTCTCTCCCTGA 59.374 52.381 0.00 0.00 42.38 3.86
28 29 1.627834 AGTTGAGCCTTTCTCTCCCTG 59.372 52.381 0.00 0.00 42.38 4.45
29 30 2.037385 AGTTGAGCCTTTCTCTCCCT 57.963 50.000 0.00 0.00 42.38 4.20
30 31 4.495690 AATAGTTGAGCCTTTCTCTCCC 57.504 45.455 0.00 0.00 42.38 4.30
31 32 5.124617 CCAAAATAGTTGAGCCTTTCTCTCC 59.875 44.000 0.00 0.00 42.38 3.71
32 33 5.940470 TCCAAAATAGTTGAGCCTTTCTCTC 59.060 40.000 0.00 0.00 42.38 3.20
33 34 5.707764 GTCCAAAATAGTTGAGCCTTTCTCT 59.292 40.000 0.00 0.00 42.38 3.10
34 35 5.106118 GGTCCAAAATAGTTGAGCCTTTCTC 60.106 44.000 0.00 0.00 42.23 2.87
35 36 4.767409 GGTCCAAAATAGTTGAGCCTTTCT 59.233 41.667 0.00 0.00 0.00 2.52
36 37 4.522789 TGGTCCAAAATAGTTGAGCCTTTC 59.477 41.667 0.00 0.00 0.00 2.62
37 38 4.479158 TGGTCCAAAATAGTTGAGCCTTT 58.521 39.130 0.00 0.00 0.00 3.11
38 39 4.112634 TGGTCCAAAATAGTTGAGCCTT 57.887 40.909 0.00 0.00 0.00 4.35
39 40 3.806949 TGGTCCAAAATAGTTGAGCCT 57.193 42.857 0.00 0.00 0.00 4.58
40 41 4.381932 CCATTGGTCCAAAATAGTTGAGCC 60.382 45.833 8.75 0.00 0.00 4.70
41 42 4.220602 ACCATTGGTCCAAAATAGTTGAGC 59.779 41.667 8.75 0.00 0.00 4.26
42 43 5.476599 TCACCATTGGTCCAAAATAGTTGAG 59.523 40.000 8.75 0.00 31.02 3.02
43 44 5.242838 GTCACCATTGGTCCAAAATAGTTGA 59.757 40.000 8.75 3.37 31.02 3.18
44 45 5.010516 TGTCACCATTGGTCCAAAATAGTTG 59.989 40.000 8.75 0.85 31.02 3.16
45 46 5.144100 TGTCACCATTGGTCCAAAATAGTT 58.856 37.500 8.75 0.00 31.02 2.24
46 47 4.735369 TGTCACCATTGGTCCAAAATAGT 58.265 39.130 8.75 1.01 31.02 2.12
47 48 5.920193 ATGTCACCATTGGTCCAAAATAG 57.080 39.130 8.75 0.36 31.02 1.73
48 49 6.726379 TCTATGTCACCATTGGTCCAAAATA 58.274 36.000 8.75 0.00 31.02 1.40
49 50 5.579047 TCTATGTCACCATTGGTCCAAAAT 58.421 37.500 8.75 0.00 31.02 1.82
50 51 4.991776 TCTATGTCACCATTGGTCCAAAA 58.008 39.130 8.75 0.00 31.02 2.44
51 52 4.649267 TCTATGTCACCATTGGTCCAAA 57.351 40.909 8.75 0.00 31.02 3.28
52 53 4.649267 TTCTATGTCACCATTGGTCCAA 57.351 40.909 6.80 6.80 31.02 3.53
53 54 4.288366 TCTTTCTATGTCACCATTGGTCCA 59.712 41.667 5.04 6.28 31.02 4.02
54 55 4.843728 TCTTTCTATGTCACCATTGGTCC 58.156 43.478 5.04 0.00 31.02 4.46
55 56 4.333926 GCTCTTTCTATGTCACCATTGGTC 59.666 45.833 5.04 0.00 31.02 4.02
56 57 4.265073 GCTCTTTCTATGTCACCATTGGT 58.735 43.478 1.37 1.37 35.62 3.67
57 58 3.310774 CGCTCTTTCTATGTCACCATTGG 59.689 47.826 0.00 0.00 32.29 3.16
58 59 4.183865 TCGCTCTTTCTATGTCACCATTG 58.816 43.478 0.00 0.00 32.29 2.82
59 60 4.160439 TCTCGCTCTTTCTATGTCACCATT 59.840 41.667 0.00 0.00 32.29 3.16
60 61 3.701542 TCTCGCTCTTTCTATGTCACCAT 59.298 43.478 0.00 0.00 34.97 3.55
61 62 3.089284 TCTCGCTCTTTCTATGTCACCA 58.911 45.455 0.00 0.00 0.00 4.17
62 63 3.378742 TCTCTCGCTCTTTCTATGTCACC 59.621 47.826 0.00 0.00 0.00 4.02
63 64 4.624336 TCTCTCGCTCTTTCTATGTCAC 57.376 45.455 0.00 0.00 0.00 3.67
64 65 5.644977 TTTCTCTCGCTCTTTCTATGTCA 57.355 39.130 0.00 0.00 0.00 3.58
65 66 5.518487 CCTTTTCTCTCGCTCTTTCTATGTC 59.482 44.000 0.00 0.00 0.00 3.06
66 67 5.186021 TCCTTTTCTCTCGCTCTTTCTATGT 59.814 40.000 0.00 0.00 0.00 2.29
67 68 5.655488 TCCTTTTCTCTCGCTCTTTCTATG 58.345 41.667 0.00 0.00 0.00 2.23
68 69 5.923733 TCCTTTTCTCTCGCTCTTTCTAT 57.076 39.130 0.00 0.00 0.00 1.98
69 70 5.723672 TTCCTTTTCTCTCGCTCTTTCTA 57.276 39.130 0.00 0.00 0.00 2.10
70 71 4.608948 TTCCTTTTCTCTCGCTCTTTCT 57.391 40.909 0.00 0.00 0.00 2.52
71 72 5.871465 ATTTCCTTTTCTCTCGCTCTTTC 57.129 39.130 0.00 0.00 0.00 2.62
72 73 5.765182 TGAATTTCCTTTTCTCTCGCTCTTT 59.235 36.000 0.00 0.00 0.00 2.52
73 74 5.308825 TGAATTTCCTTTTCTCTCGCTCTT 58.691 37.500 0.00 0.00 0.00 2.85
74 75 4.899502 TGAATTTCCTTTTCTCTCGCTCT 58.100 39.130 0.00 0.00 0.00 4.09
75 76 4.693095 ACTGAATTTCCTTTTCTCTCGCTC 59.307 41.667 0.00 0.00 0.00 5.03
76 77 4.453819 CACTGAATTTCCTTTTCTCTCGCT 59.546 41.667 0.00 0.00 0.00 4.93
77 78 4.716943 CACTGAATTTCCTTTTCTCTCGC 58.283 43.478 0.00 0.00 0.00 5.03
78 79 4.214119 TGCACTGAATTTCCTTTTCTCTCG 59.786 41.667 0.00 0.00 0.00 4.04
79 80 5.695851 TGCACTGAATTTCCTTTTCTCTC 57.304 39.130 0.00 0.00 0.00 3.20
80 81 5.829924 TCTTGCACTGAATTTCCTTTTCTCT 59.170 36.000 0.00 0.00 0.00 3.10
81 82 6.076981 TCTTGCACTGAATTTCCTTTTCTC 57.923 37.500 0.00 0.00 0.00 2.87
82 83 6.661304 ATCTTGCACTGAATTTCCTTTTCT 57.339 33.333 0.00 0.00 0.00 2.52
83 84 6.925165 TCAATCTTGCACTGAATTTCCTTTTC 59.075 34.615 0.00 0.00 0.00 2.29
84 85 6.819284 TCAATCTTGCACTGAATTTCCTTTT 58.181 32.000 0.00 0.00 0.00 2.27
85 86 6.409524 TCAATCTTGCACTGAATTTCCTTT 57.590 33.333 0.00 0.00 0.00 3.11
86 87 6.266103 TCTTCAATCTTGCACTGAATTTCCTT 59.734 34.615 0.00 0.00 0.00 3.36
87 88 5.771666 TCTTCAATCTTGCACTGAATTTCCT 59.228 36.000 0.00 0.00 0.00 3.36
88 89 6.017400 TCTTCAATCTTGCACTGAATTTCC 57.983 37.500 0.00 0.00 0.00 3.13
89 90 7.650903 AGTTTCTTCAATCTTGCACTGAATTTC 59.349 33.333 0.00 0.00 0.00 2.17
90 91 7.495055 AGTTTCTTCAATCTTGCACTGAATTT 58.505 30.769 0.00 0.00 0.00 1.82
91 92 7.047460 AGTTTCTTCAATCTTGCACTGAATT 57.953 32.000 0.00 0.00 0.00 2.17
92 93 6.645790 AGTTTCTTCAATCTTGCACTGAAT 57.354 33.333 0.00 0.00 0.00 2.57
93 94 7.750229 ATAGTTTCTTCAATCTTGCACTGAA 57.250 32.000 0.00 0.00 0.00 3.02
94 95 7.587629 CAATAGTTTCTTCAATCTTGCACTGA 58.412 34.615 0.00 0.00 0.00 3.41
95 96 6.307318 GCAATAGTTTCTTCAATCTTGCACTG 59.693 38.462 0.00 0.00 0.00 3.66
96 97 6.385033 GCAATAGTTTCTTCAATCTTGCACT 58.615 36.000 0.00 0.00 0.00 4.40
97 98 5.574443 GGCAATAGTTTCTTCAATCTTGCAC 59.426 40.000 0.00 0.00 33.81 4.57
98 99 5.243507 TGGCAATAGTTTCTTCAATCTTGCA 59.756 36.000 0.00 0.00 33.81 4.08
99 100 5.713025 TGGCAATAGTTTCTTCAATCTTGC 58.287 37.500 0.00 0.00 0.00 4.01
100 101 7.318141 ACATGGCAATAGTTTCTTCAATCTTG 58.682 34.615 0.00 0.00 0.00 3.02
101 102 7.472334 ACATGGCAATAGTTTCTTCAATCTT 57.528 32.000 0.00 0.00 0.00 2.40
102 103 7.318141 CAACATGGCAATAGTTTCTTCAATCT 58.682 34.615 0.00 0.00 0.00 2.40
103 104 6.532657 CCAACATGGCAATAGTTTCTTCAATC 59.467 38.462 0.00 0.00 0.00 2.67
104 105 6.211184 TCCAACATGGCAATAGTTTCTTCAAT 59.789 34.615 0.00 0.00 37.47 2.57
105 106 5.538053 TCCAACATGGCAATAGTTTCTTCAA 59.462 36.000 0.00 0.00 37.47 2.69
106 107 5.048083 GTCCAACATGGCAATAGTTTCTTCA 60.048 40.000 0.00 0.00 37.47 3.02
107 108 5.402398 GTCCAACATGGCAATAGTTTCTTC 58.598 41.667 0.00 0.00 37.47 2.87
108 109 4.220602 GGTCCAACATGGCAATAGTTTCTT 59.779 41.667 0.00 0.00 37.47 2.52
109 110 3.763897 GGTCCAACATGGCAATAGTTTCT 59.236 43.478 0.00 0.00 37.47 2.52
110 111 3.509575 TGGTCCAACATGGCAATAGTTTC 59.490 43.478 0.00 0.00 37.47 2.78
111 112 3.258123 GTGGTCCAACATGGCAATAGTTT 59.742 43.478 0.00 0.00 37.47 2.66
112 113 2.825532 GTGGTCCAACATGGCAATAGTT 59.174 45.455 0.00 0.00 37.47 2.24
113 114 2.224992 TGTGGTCCAACATGGCAATAGT 60.225 45.455 0.00 0.00 37.47 2.12
114 115 2.445427 TGTGGTCCAACATGGCAATAG 58.555 47.619 0.00 0.00 37.47 1.73
115 116 2.593925 TGTGGTCCAACATGGCAATA 57.406 45.000 0.00 0.00 37.47 1.90
116 117 1.826720 GATGTGGTCCAACATGGCAAT 59.173 47.619 10.53 0.00 40.87 3.56
117 118 1.255882 GATGTGGTCCAACATGGCAA 58.744 50.000 10.53 0.00 40.87 4.52
118 119 0.112025 TGATGTGGTCCAACATGGCA 59.888 50.000 10.53 0.00 40.87 4.92
119 120 1.406539 GATGATGTGGTCCAACATGGC 59.593 52.381 10.53 1.00 40.87 4.40
120 121 2.725637 TGATGATGTGGTCCAACATGG 58.274 47.619 10.53 0.00 40.87 3.66
121 122 4.787260 TTTGATGATGTGGTCCAACATG 57.213 40.909 10.53 0.00 40.87 3.21
122 123 7.322664 GTTTATTTGATGATGTGGTCCAACAT 58.677 34.615 0.00 0.00 43.47 2.71
123 124 6.295011 GGTTTATTTGATGATGTGGTCCAACA 60.295 38.462 0.00 0.00 0.00 3.33
124 125 6.099341 GGTTTATTTGATGATGTGGTCCAAC 58.901 40.000 0.00 0.00 0.00 3.77
125 126 5.105957 CGGTTTATTTGATGATGTGGTCCAA 60.106 40.000 0.00 0.00 0.00 3.53
126 127 4.397730 CGGTTTATTTGATGATGTGGTCCA 59.602 41.667 0.00 0.00 0.00 4.02
127 128 4.733523 GCGGTTTATTTGATGATGTGGTCC 60.734 45.833 0.00 0.00 0.00 4.46
128 129 4.096382 AGCGGTTTATTTGATGATGTGGTC 59.904 41.667 0.00 0.00 0.00 4.02
129 130 4.016444 AGCGGTTTATTTGATGATGTGGT 58.984 39.130 0.00 0.00 0.00 4.16
130 131 4.637483 AGCGGTTTATTTGATGATGTGG 57.363 40.909 0.00 0.00 0.00 4.17
131 132 5.639757 TGAAGCGGTTTATTTGATGATGTG 58.360 37.500 0.00 0.00 0.00 3.21
132 133 5.415701 ACTGAAGCGGTTTATTTGATGATGT 59.584 36.000 0.00 0.00 0.00 3.06
133 134 5.883661 ACTGAAGCGGTTTATTTGATGATG 58.116 37.500 0.00 0.00 0.00 3.07
134 135 6.150976 TGAACTGAAGCGGTTTATTTGATGAT 59.849 34.615 0.00 0.00 32.62 2.45
135 136 5.471797 TGAACTGAAGCGGTTTATTTGATGA 59.528 36.000 0.00 0.00 32.62 2.92
136 137 5.698832 TGAACTGAAGCGGTTTATTTGATG 58.301 37.500 0.00 0.00 32.62 3.07
137 138 5.106157 CCTGAACTGAAGCGGTTTATTTGAT 60.106 40.000 0.00 0.00 32.62 2.57
138 139 4.215399 CCTGAACTGAAGCGGTTTATTTGA 59.785 41.667 0.00 0.00 32.62 2.69
139 140 4.475944 CCTGAACTGAAGCGGTTTATTTG 58.524 43.478 0.00 0.00 32.62 2.32
140 141 3.506067 CCCTGAACTGAAGCGGTTTATTT 59.494 43.478 0.00 0.00 32.62 1.40
141 142 3.081804 CCCTGAACTGAAGCGGTTTATT 58.918 45.455 0.00 0.00 32.62 1.40
142 143 2.618045 CCCCTGAACTGAAGCGGTTTAT 60.618 50.000 0.00 0.00 32.62 1.40
143 144 1.271163 CCCCTGAACTGAAGCGGTTTA 60.271 52.381 0.00 0.00 32.62 2.01
144 145 0.537371 CCCCTGAACTGAAGCGGTTT 60.537 55.000 0.00 0.00 32.62 3.27
145 146 1.073199 CCCCTGAACTGAAGCGGTT 59.927 57.895 0.00 0.00 35.46 4.44
146 147 1.831652 CTCCCCTGAACTGAAGCGGT 61.832 60.000 0.00 0.00 0.00 5.68
147 148 1.078848 CTCCCCTGAACTGAAGCGG 60.079 63.158 0.00 0.00 0.00 5.52
148 149 1.078848 CCTCCCCTGAACTGAAGCG 60.079 63.158 0.00 0.00 0.00 4.68
149 150 0.035915 GTCCTCCCCTGAACTGAAGC 60.036 60.000 0.00 0.00 0.00 3.86
150 151 0.615850 GGTCCTCCCCTGAACTGAAG 59.384 60.000 0.00 0.00 0.00 3.02
151 152 0.104672 TGGTCCTCCCCTGAACTGAA 60.105 55.000 0.00 0.00 0.00 3.02
152 153 0.104672 TTGGTCCTCCCCTGAACTGA 60.105 55.000 0.00 0.00 0.00 3.41
153 154 0.771127 TTTGGTCCTCCCCTGAACTG 59.229 55.000 0.00 0.00 0.00 3.16
154 155 0.771755 GTTTGGTCCTCCCCTGAACT 59.228 55.000 0.00 0.00 0.00 3.01
155 156 0.476771 TGTTTGGTCCTCCCCTGAAC 59.523 55.000 0.00 0.00 0.00 3.18
156 157 1.075374 CATGTTTGGTCCTCCCCTGAA 59.925 52.381 0.00 0.00 0.00 3.02
157 158 0.698238 CATGTTTGGTCCTCCCCTGA 59.302 55.000 0.00 0.00 0.00 3.86
158 159 0.405585 ACATGTTTGGTCCTCCCCTG 59.594 55.000 0.00 0.00 0.00 4.45
159 160 0.698818 GACATGTTTGGTCCTCCCCT 59.301 55.000 0.00 0.00 0.00 4.79
160 161 0.698818 AGACATGTTTGGTCCTCCCC 59.301 55.000 0.00 0.00 35.89 4.81
161 162 1.614317 CCAGACATGTTTGGTCCTCCC 60.614 57.143 24.01 0.00 35.89 4.30
162 163 1.826385 CCAGACATGTTTGGTCCTCC 58.174 55.000 24.01 0.00 35.89 4.30
163 164 1.168714 GCCAGACATGTTTGGTCCTC 58.831 55.000 30.11 14.32 37.20 3.71
164 165 0.773644 AGCCAGACATGTTTGGTCCT 59.226 50.000 30.11 19.65 37.20 3.85
165 166 1.620822 AAGCCAGACATGTTTGGTCC 58.379 50.000 30.11 17.98 37.20 4.46
166 167 4.072131 TCTTAAGCCAGACATGTTTGGTC 58.928 43.478 30.11 23.04 37.20 4.02
167 168 4.098914 TCTTAAGCCAGACATGTTTGGT 57.901 40.909 30.11 17.66 37.20 3.67
168 169 4.520492 ACTTCTTAAGCCAGACATGTTTGG 59.480 41.667 27.08 27.08 37.85 3.28
169 170 5.695851 ACTTCTTAAGCCAGACATGTTTG 57.304 39.130 9.38 9.38 0.00 2.93
170 171 9.515226 TTATAACTTCTTAAGCCAGACATGTTT 57.485 29.630 0.00 0.00 0.00 2.83
171 172 9.167311 CTTATAACTTCTTAAGCCAGACATGTT 57.833 33.333 0.00 3.37 0.00 2.71
172 173 7.770897 CCTTATAACTTCTTAAGCCAGACATGT 59.229 37.037 0.00 0.00 0.00 3.21
173 174 7.227512 CCCTTATAACTTCTTAAGCCAGACATG 59.772 40.741 8.15 0.00 0.00 3.21
174 175 7.092399 ACCCTTATAACTTCTTAAGCCAGACAT 60.092 37.037 8.15 4.26 0.00 3.06
175 176 6.214819 ACCCTTATAACTTCTTAAGCCAGACA 59.785 38.462 8.15 0.00 0.00 3.41
176 177 6.539103 CACCCTTATAACTTCTTAAGCCAGAC 59.461 42.308 8.15 0.00 0.00 3.51
177 178 6.650120 CACCCTTATAACTTCTTAAGCCAGA 58.350 40.000 8.15 0.00 0.00 3.86
178 179 5.297029 GCACCCTTATAACTTCTTAAGCCAG 59.703 44.000 0.00 0.00 0.00 4.85
179 180 5.190677 GCACCCTTATAACTTCTTAAGCCA 58.809 41.667 0.00 0.00 0.00 4.75
180 181 5.190677 TGCACCCTTATAACTTCTTAAGCC 58.809 41.667 0.00 0.00 0.00 4.35
181 182 6.374613 ACTTGCACCCTTATAACTTCTTAAGC 59.625 38.462 0.00 0.00 0.00 3.09
182 183 7.923414 ACTTGCACCCTTATAACTTCTTAAG 57.077 36.000 0.00 0.00 0.00 1.85
183 184 7.722285 ACAACTTGCACCCTTATAACTTCTTAA 59.278 33.333 0.00 0.00 0.00 1.85
184 185 7.228590 ACAACTTGCACCCTTATAACTTCTTA 58.771 34.615 0.00 0.00 0.00 2.10
185 186 6.068670 ACAACTTGCACCCTTATAACTTCTT 58.931 36.000 0.00 0.00 0.00 2.52
186 187 5.631119 ACAACTTGCACCCTTATAACTTCT 58.369 37.500 0.00 0.00 0.00 2.85
187 188 5.959618 ACAACTTGCACCCTTATAACTTC 57.040 39.130 0.00 0.00 0.00 3.01
188 189 5.830991 TGAACAACTTGCACCCTTATAACTT 59.169 36.000 0.00 0.00 0.00 2.66
189 190 5.381757 TGAACAACTTGCACCCTTATAACT 58.618 37.500 0.00 0.00 0.00 2.24
190 191 5.699097 TGAACAACTTGCACCCTTATAAC 57.301 39.130 0.00 0.00 0.00 1.89
191 192 6.909550 ATTGAACAACTTGCACCCTTATAA 57.090 33.333 0.00 0.00 0.00 0.98
192 193 6.909550 AATTGAACAACTTGCACCCTTATA 57.090 33.333 0.00 0.00 0.00 0.98
193 194 5.806654 AATTGAACAACTTGCACCCTTAT 57.193 34.783 0.00 0.00 0.00 1.73
199 200 7.755582 ACTCTAAAAATTGAACAACTTGCAC 57.244 32.000 0.00 0.00 0.00 4.57
245 246 2.684943 TCTGTCCCTCAACTAACCACA 58.315 47.619 0.00 0.00 0.00 4.17
249 250 6.937392 AGTCTATTTCTGTCCCTCAACTAAC 58.063 40.000 0.00 0.00 0.00 2.34
264 265 9.026074 CATCGTAGAAAGAGGAAAGTCTATTTC 57.974 37.037 4.42 4.42 43.58 2.17
356 1949 1.153086 CAGAAATGGGCCCTCTCGG 60.153 63.158 25.70 13.25 0.00 4.63
386 1979 3.465122 CGACCTCCGGTTTATTGTTTG 57.535 47.619 0.00 0.00 35.25 2.93
555 2162 8.677148 AGTTGCTTAATGAGTAAACAAAGAGA 57.323 30.769 0.00 0.00 31.29 3.10
587 2194 8.900511 TTTTGCATCTTAAATCATTTCTCTCG 57.099 30.769 0.00 0.00 0.00 4.04
625 2234 2.182030 GAAGCAGGGGAGTCGTCG 59.818 66.667 0.00 0.00 0.00 5.12
743 2354 2.663196 GGTCAGGTCTGAACGGGG 59.337 66.667 1.86 0.00 41.85 5.73
762 2373 2.096218 GCATATTGATTCTTCGTCGGGC 60.096 50.000 0.00 0.00 0.00 6.13
765 2376 5.687730 ACAGTAGCATATTGATTCTTCGTCG 59.312 40.000 0.00 0.00 32.04 5.12
780 2391 3.417069 TGGTTGCAACTACAGTAGCAT 57.583 42.857 27.64 0.00 36.80 3.79
781 2392 2.920724 TGGTTGCAACTACAGTAGCA 57.079 45.000 27.64 12.54 34.79 3.49
782 2393 4.766404 AATTGGTTGCAACTACAGTAGC 57.234 40.909 27.64 10.07 0.00 3.58
783 2394 7.435068 AGTAAATTGGTTGCAACTACAGTAG 57.565 36.000 27.64 6.00 0.00 2.57
784 2395 9.509956 AATAGTAAATTGGTTGCAACTACAGTA 57.490 29.630 27.64 14.02 0.00 2.74
785 2396 7.996098 ATAGTAAATTGGTTGCAACTACAGT 57.004 32.000 27.64 12.97 0.00 3.55
786 2397 7.968405 GGAATAGTAAATTGGTTGCAACTACAG 59.032 37.037 27.64 0.00 0.00 2.74
787 2398 7.668052 AGGAATAGTAAATTGGTTGCAACTACA 59.332 33.333 27.64 16.11 0.00 2.74
788 2399 8.051901 AGGAATAGTAAATTGGTTGCAACTAC 57.948 34.615 27.64 20.46 0.00 2.73
789 2400 9.914834 ATAGGAATAGTAAATTGGTTGCAACTA 57.085 29.630 27.64 20.61 0.00 2.24
790 2401 8.823220 ATAGGAATAGTAAATTGGTTGCAACT 57.177 30.769 27.64 11.27 0.00 3.16
804 2415 9.688091 CAGCCTTCAGACTATATAGGAATAGTA 57.312 37.037 14.25 0.00 41.65 1.82
805 2416 8.394822 TCAGCCTTCAGACTATATAGGAATAGT 58.605 37.037 14.25 0.00 43.72 2.12
806 2417 8.815565 TCAGCCTTCAGACTATATAGGAATAG 57.184 38.462 14.25 4.86 35.86 1.73
807 2418 7.836685 CCTCAGCCTTCAGACTATATAGGAATA 59.163 40.741 14.25 0.00 0.00 1.75
808 2419 6.667414 CCTCAGCCTTCAGACTATATAGGAAT 59.333 42.308 14.25 0.00 0.00 3.01
809 2420 6.013379 CCTCAGCCTTCAGACTATATAGGAA 58.987 44.000 14.25 7.12 0.00 3.36
810 2421 5.575157 CCTCAGCCTTCAGACTATATAGGA 58.425 45.833 14.25 0.00 0.00 2.94
811 2422 4.159506 GCCTCAGCCTTCAGACTATATAGG 59.840 50.000 14.25 0.00 0.00 2.57
812 2423 5.323371 GCCTCAGCCTTCAGACTATATAG 57.677 47.826 8.27 8.27 0.00 1.31
856 2467 2.113986 GACCAGCTTGGCACCACT 59.886 61.111 0.00 0.00 42.67 4.00
888 2499 1.145119 GTCTTCCCCTGTCCTGGTTTT 59.855 52.381 0.00 0.00 0.00 2.43
911 2526 4.193893 TGGGGATGATGGGCGCAG 62.194 66.667 10.83 0.00 0.00 5.18
996 2623 2.585247 GGCACCGCGTCCATCTAC 60.585 66.667 4.92 0.00 0.00 2.59
1221 2848 2.498078 GAGAAGAAGACCCACCGATTCT 59.502 50.000 0.00 0.00 33.51 2.40
1563 3190 0.870307 CGATGACGGTGTCGGATTCC 60.870 60.000 5.00 0.00 41.39 3.01
1671 3298 3.323136 GCGAGCGCGACGATGAAT 61.323 61.111 27.55 0.00 40.82 2.57
1733 3360 3.953612 AGACACCAACTTCAAGCATTTGA 59.046 39.130 0.00 0.00 41.44 2.69
1744 3371 2.550208 GGACCGATGAAGACACCAACTT 60.550 50.000 0.00 0.00 0.00 2.66
1745 3372 1.002087 GGACCGATGAAGACACCAACT 59.998 52.381 0.00 0.00 0.00 3.16
1747 3374 1.001974 CAGGACCGATGAAGACACCAA 59.998 52.381 0.00 0.00 0.00 3.67
1748 3375 0.608130 CAGGACCGATGAAGACACCA 59.392 55.000 0.00 0.00 0.00 4.17
1751 3378 1.751351 CTAGCAGGACCGATGAAGACA 59.249 52.381 0.00 0.00 0.00 3.41
1759 3389 1.754621 CTGGAGCTAGCAGGACCGA 60.755 63.158 18.83 5.22 0.00 4.69
1760 3390 2.790791 CCTGGAGCTAGCAGGACCG 61.791 68.421 18.83 10.22 38.33 4.79
1761 3391 1.381872 TCCTGGAGCTAGCAGGACC 60.382 63.158 18.83 14.36 39.92 4.46
1762 3392 1.398958 CCTCCTGGAGCTAGCAGGAC 61.399 65.000 18.83 4.26 39.92 3.85
1764 3394 2.806009 GCCTCCTGGAGCTAGCAGG 61.806 68.421 18.83 15.20 37.45 4.85
1792 3423 2.034104 AGCATGGACATACACAGCAG 57.966 50.000 0.00 0.00 0.00 4.24
1795 3426 3.503363 ACACAAAGCATGGACATACACAG 59.497 43.478 0.00 0.00 0.00 3.66
1801 3432 2.621407 CCCCTACACAAAGCATGGACAT 60.621 50.000 0.00 0.00 0.00 3.06
1806 3437 3.129287 GTGATTCCCCTACACAAAGCATG 59.871 47.826 0.00 0.00 35.06 4.06
1865 3506 3.119291 CAACGTCATATCAGGCTCTCAC 58.881 50.000 0.00 0.00 0.00 3.51
1867 3508 3.551863 CCTCAACGTCATATCAGGCTCTC 60.552 52.174 0.00 0.00 0.00 3.20
1891 3532 1.858091 ACTCTGTTTCACAGCGTCAG 58.142 50.000 0.00 0.00 39.73 3.51
1934 3575 1.079750 GTCAACCGAGTGCCCTCTC 60.080 63.158 0.00 0.00 35.43 3.20
1954 3595 1.669795 CGAATTGGACCAAGCAAAGGC 60.670 52.381 13.43 0.00 41.61 4.35
1960 3601 0.966179 AAACCCGAATTGGACCAAGC 59.034 50.000 13.43 6.44 42.00 4.01
1982 3623 1.514003 TGCGTTGAAGATGCCGTAAA 58.486 45.000 0.00 0.00 39.64 2.01
1983 3624 1.514003 TTGCGTTGAAGATGCCGTAA 58.486 45.000 0.00 0.00 39.64 3.18
1985 3626 0.040425 GTTTGCGTTGAAGATGCCGT 60.040 50.000 0.00 0.00 39.64 5.68
1986 3627 0.729140 GGTTTGCGTTGAAGATGCCG 60.729 55.000 0.00 0.00 39.64 5.69
1992 3633 3.377439 GGTTTAAGGGTTTGCGTTGAAG 58.623 45.455 0.00 0.00 0.00 3.02
1994 3635 1.334243 CGGTTTAAGGGTTTGCGTTGA 59.666 47.619 0.00 0.00 0.00 3.18
1998 3639 0.662077 GCACGGTTTAAGGGTTTGCG 60.662 55.000 0.00 0.00 0.00 4.85
2001 3642 1.102222 TGCGCACGGTTTAAGGGTTT 61.102 50.000 5.66 0.00 0.00 3.27
2002 3643 0.891904 ATGCGCACGGTTTAAGGGTT 60.892 50.000 14.90 0.00 0.00 4.11
2009 3650 2.355718 GGCAAATGCGCACGGTTT 60.356 55.556 14.90 7.00 43.26 3.27
2035 3676 3.311106 TGATAGAACACGTTCGAACCAC 58.689 45.455 22.07 9.21 43.97 4.16
2040 3681 4.421058 CTTGGATGATAGAACACGTTCGA 58.579 43.478 4.35 0.00 43.97 3.71
2042 3683 3.932710 TGCTTGGATGATAGAACACGTTC 59.067 43.478 1.54 1.54 39.78 3.95
2043 3684 3.935203 CTGCTTGGATGATAGAACACGTT 59.065 43.478 0.00 0.00 0.00 3.99
2053 3694 2.086869 CGTGAAACCTGCTTGGATGAT 58.913 47.619 3.40 0.00 39.71 2.45
2054 3695 1.071542 TCGTGAAACCTGCTTGGATGA 59.928 47.619 3.40 0.00 39.71 2.92
2067 3708 2.257371 CCCGTCGAGCTCGTGAAA 59.743 61.111 33.33 13.67 40.80 2.69
2089 3730 0.832135 TCACCTCCGTCCTTGCTCTT 60.832 55.000 0.00 0.00 0.00 2.85
2093 3734 2.047179 GGTCACCTCCGTCCTTGC 60.047 66.667 0.00 0.00 0.00 4.01
2103 3744 3.374402 CACTCGCTCCGGTCACCT 61.374 66.667 0.00 0.00 0.00 4.00
2105 3746 2.711922 ATCCACTCGCTCCGGTCAC 61.712 63.158 0.00 0.00 0.00 3.67
2111 3752 4.899239 CGGCCATCCACTCGCTCC 62.899 72.222 2.24 0.00 0.00 4.70
2116 3757 4.489771 CCCCACGGCCATCCACTC 62.490 72.222 2.24 0.00 0.00 3.51
2142 3783 1.529309 GATCCTCCCCAGAGTTGGC 59.471 63.158 0.00 0.00 43.58 4.52
2146 3787 2.444895 GCCGATCCTCCCCAGAGT 60.445 66.667 0.00 0.00 38.58 3.24
2150 3791 4.146156 TACCGCCGATCCTCCCCA 62.146 66.667 0.00 0.00 0.00 4.96
2153 3794 2.203451 TCCTACCGCCGATCCTCC 60.203 66.667 0.00 0.00 0.00 4.30
2198 3839 1.124477 TGGCCACAAATTGAACCCCC 61.124 55.000 0.00 0.00 0.00 5.40
2202 3843 1.686052 TCCACTGGCCACAAATTGAAC 59.314 47.619 0.00 0.00 0.00 3.18
2204 3845 2.079170 TTCCACTGGCCACAAATTGA 57.921 45.000 0.00 0.00 0.00 2.57
2206 3847 1.545582 CGATTCCACTGGCCACAAATT 59.454 47.619 0.00 0.00 0.00 1.82
2214 3855 1.639298 GCACACTCGATTCCACTGGC 61.639 60.000 0.00 0.00 0.00 4.85
2216 3857 1.354040 GAGCACACTCGATTCCACTG 58.646 55.000 0.00 0.00 32.04 3.66
2248 3889 8.568676 TCTCTCTATAAATAGACTCATTCCCG 57.431 38.462 0.00 0.00 35.64 5.14
2252 3893 8.461033 ACCCCTCTCTCTATAAATAGACTCATT 58.539 37.037 0.00 0.00 35.64 2.57
2256 3897 6.557568 CCACCCCTCTCTCTATAAATAGACT 58.442 44.000 0.00 0.00 35.64 3.24
2257 3898 5.186215 GCCACCCCTCTCTCTATAAATAGAC 59.814 48.000 0.00 0.00 35.64 2.59
2265 3906 1.152440 CGGCCACCCCTCTCTCTAT 60.152 63.158 2.24 0.00 0.00 1.98
2270 3911 4.452733 CGTTCGGCCACCCCTCTC 62.453 72.222 2.24 0.00 0.00 3.20
2282 3923 2.876645 GACGGAGCTCAGCGTTCG 60.877 66.667 17.19 11.08 0.00 3.95
2283 3924 2.876645 CGACGGAGCTCAGCGTTC 60.877 66.667 17.19 4.49 0.00 3.95
2284 3925 4.421479 CCGACGGAGCTCAGCGTT 62.421 66.667 17.19 0.00 0.00 4.84
2298 3939 3.068691 CCGACAGCCCTTCTCCGA 61.069 66.667 0.00 0.00 0.00 4.55
2307 3948 1.424493 CTCTGATTTCGCCGACAGCC 61.424 60.000 0.00 0.00 38.78 4.85
2313 3954 0.249238 CTCTCCCTCTGATTTCGCCG 60.249 60.000 0.00 0.00 0.00 6.46
2320 3961 0.178992 CGAGCTCCTCTCCCTCTGAT 60.179 60.000 8.47 0.00 38.62 2.90
2321 3962 1.225983 CGAGCTCCTCTCCCTCTGA 59.774 63.158 8.47 0.00 38.62 3.27
2322 3963 1.827789 CCGAGCTCCTCTCCCTCTG 60.828 68.421 8.47 0.00 38.62 3.35
2332 3973 1.743252 CAAGACTTGCCCGAGCTCC 60.743 63.158 8.47 0.00 40.80 4.70
2342 3983 3.368948 GCCTACTTCCTCTCCAAGACTTG 60.369 52.174 8.31 8.31 0.00 3.16
2343 3984 2.835156 GCCTACTTCCTCTCCAAGACTT 59.165 50.000 0.00 0.00 0.00 3.01
2354 3995 2.122167 CGGAGCTCGCCTACTTCCT 61.122 63.158 7.83 0.00 0.00 3.36
2355 3996 2.065906 CTCGGAGCTCGCCTACTTCC 62.066 65.000 7.83 0.00 39.05 3.46
2402 4043 0.441533 CTGCTTCACTTAGTGCGCTG 59.558 55.000 20.59 17.53 33.36 5.18
2413 4054 3.426568 GTGCGGCTCCTGCTTCAC 61.427 66.667 0.00 0.00 39.59 3.18
2416 4057 4.711949 CTGGTGCGGCTCCTGCTT 62.712 66.667 20.53 0.00 39.59 3.91
2431 4072 3.782244 GCGGAACAGTGAGCGCTG 61.782 66.667 18.48 2.93 41.92 5.18
2436 4077 2.743718 ACTGGGCGGAACAGTGAG 59.256 61.111 0.00 0.00 46.67 3.51
2442 4083 2.436115 GGCACTACTGGGCGGAAC 60.436 66.667 0.00 0.00 0.00 3.62
2468 4115 4.969196 ACACCGACAGGCAGCACG 62.969 66.667 0.00 0.00 42.76 5.34
2483 4130 4.414956 ATCTGCCCCTCCCCGACA 62.415 66.667 0.00 0.00 0.00 4.35
2486 4133 3.089874 TTGATCTGCCCCTCCCCG 61.090 66.667 0.00 0.00 0.00 5.73
2497 4144 1.903877 CGTCCACCTGGCCTTGATCT 61.904 60.000 3.32 0.00 34.44 2.75
2499 4146 2.671070 CGTCCACCTGGCCTTGAT 59.329 61.111 3.32 0.00 34.44 2.57
2500 4147 4.329545 GCGTCCACCTGGCCTTGA 62.330 66.667 3.32 0.00 34.44 3.02
2517 4164 3.699894 ACTCAGCACCCTCCTGCG 61.700 66.667 0.00 0.00 42.42 5.18
2520 4167 3.325753 GCCACTCAGCACCCTCCT 61.326 66.667 0.00 0.00 0.00 3.69
2525 4172 4.767255 CCTCCGCCACTCAGCACC 62.767 72.222 0.00 0.00 0.00 5.01
2529 4176 2.581354 CTTCCCTCCGCCACTCAG 59.419 66.667 0.00 0.00 0.00 3.35
2555 4202 2.956964 CGTTCATCCTCCTCGCGC 60.957 66.667 0.00 0.00 0.00 6.86
2559 4206 2.107141 CGCCCGTTCATCCTCCTC 59.893 66.667 0.00 0.00 0.00 3.71
2577 4224 3.532155 ATCGGGGCTCTCTGTCGC 61.532 66.667 0.00 0.00 0.00 5.19
2598 4245 2.520039 ATGCATTCGACGCGCTCTG 61.520 57.895 5.73 0.00 0.00 3.35
2605 4252 0.713329 TGTTCGACATGCATTCGACG 59.287 50.000 24.02 14.97 44.89 5.12
2607 4254 1.075542 GGTGTTCGACATGCATTCGA 58.924 50.000 21.84 21.84 43.59 3.71
2610 4257 2.009774 GCTAGGTGTTCGACATGCATT 58.990 47.619 0.00 0.00 0.00 3.56
2611 4258 1.066215 TGCTAGGTGTTCGACATGCAT 60.066 47.619 0.00 0.00 0.00 3.96
2620 4267 1.741770 CGCTGGGTGCTAGGTGTTC 60.742 63.158 0.00 0.00 40.11 3.18
2628 4275 4.626081 GTGACCACGCTGGGTGCT 62.626 66.667 18.35 5.85 45.62 4.40
2637 4284 3.698463 GTGAACGCGGTGACCACG 61.698 66.667 10.89 10.89 0.00 4.94
2638 4285 2.279918 AGTGAACGCGGTGACCAC 60.280 61.111 10.98 8.39 0.00 4.16
2697 4344 2.612221 CCCCACGTTGAAGGAACTACTC 60.612 54.545 0.00 0.00 38.49 2.59
2698 4345 1.346722 CCCCACGTTGAAGGAACTACT 59.653 52.381 0.00 0.00 38.49 2.57
2699 4346 1.804601 CCCCACGTTGAAGGAACTAC 58.195 55.000 0.00 0.00 38.49 2.73
2700 4347 0.035739 GCCCCACGTTGAAGGAACTA 59.964 55.000 0.00 0.00 38.49 2.24
2702 4349 3.351450 GCCCCACGTTGAAGGAAC 58.649 61.111 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.