Multiple sequence alignment - TraesCS5B01G483400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G483400 | chr5B | 100.000 | 3618 | 0 | 0 | 1 | 3618 | 655211559 | 655207942 | 0.000000e+00 | 6682.0 |
1 | TraesCS5B01G483400 | chr5B | 87.789 | 909 | 74 | 16 | 25 | 899 | 333191570 | 333192475 | 0.000000e+00 | 1029.0 |
2 | TraesCS5B01G483400 | chr5B | 86.294 | 912 | 81 | 23 | 25 | 902 | 425181888 | 425180987 | 0.000000e+00 | 952.0 |
3 | TraesCS5B01G483400 | chr5B | 91.603 | 393 | 31 | 2 | 511 | 903 | 87139442 | 87139052 | 3.180000e-150 | 542.0 |
4 | TraesCS5B01G483400 | chr5A | 90.771 | 2102 | 147 | 21 | 945 | 3034 | 647487952 | 647485886 | 0.000000e+00 | 2763.0 |
5 | TraesCS5B01G483400 | chr5A | 80.743 | 888 | 101 | 45 | 64 | 902 | 543566029 | 543565163 | 2.370000e-176 | 628.0 |
6 | TraesCS5B01G483400 | chr5A | 81.663 | 409 | 45 | 11 | 3220 | 3618 | 647485711 | 647485323 | 2.710000e-81 | 313.0 |
7 | TraesCS5B01G483400 | chr5D | 91.473 | 1935 | 89 | 23 | 903 | 2795 | 520201186 | 520199286 | 0.000000e+00 | 2590.0 |
8 | TraesCS5B01G483400 | chr5D | 90.465 | 409 | 22 | 8 | 3218 | 3618 | 520198901 | 520198502 | 1.150000e-144 | 523.0 |
9 | TraesCS5B01G483400 | chr5D | 91.943 | 211 | 16 | 1 | 2825 | 3034 | 520199287 | 520199077 | 9.820000e-76 | 294.0 |
10 | TraesCS5B01G483400 | chr5D | 90.476 | 105 | 9 | 1 | 3051 | 3154 | 520199009 | 520198905 | 1.750000e-28 | 137.0 |
11 | TraesCS5B01G483400 | chr3A | 89.450 | 1782 | 133 | 19 | 940 | 2702 | 170977275 | 170979020 | 0.000000e+00 | 2198.0 |
12 | TraesCS5B01G483400 | chr3A | 92.961 | 412 | 21 | 3 | 3215 | 3618 | 170980382 | 170980793 | 8.650000e-166 | 593.0 |
13 | TraesCS5B01G483400 | chr3A | 91.469 | 211 | 17 | 1 | 2825 | 3034 | 170980000 | 170980210 | 4.570000e-74 | 289.0 |
14 | TraesCS5B01G483400 | chr3A | 90.476 | 105 | 7 | 3 | 3051 | 3153 | 170980277 | 170980380 | 6.300000e-28 | 135.0 |
15 | TraesCS5B01G483400 | chr4B | 96.389 | 914 | 21 | 6 | 1 | 903 | 440918100 | 440919012 | 0.000000e+00 | 1495.0 |
16 | TraesCS5B01G483400 | chr2B | 88.222 | 883 | 63 | 16 | 25 | 903 | 649945435 | 649944590 | 0.000000e+00 | 1016.0 |
17 | TraesCS5B01G483400 | chr6B | 85.339 | 914 | 80 | 32 | 26 | 902 | 6667224 | 6668120 | 0.000000e+00 | 896.0 |
18 | TraesCS5B01G483400 | chr6B | 84.759 | 912 | 93 | 23 | 25 | 902 | 6613329 | 6612430 | 0.000000e+00 | 872.0 |
19 | TraesCS5B01G483400 | chr6B | 82.308 | 260 | 32 | 6 | 645 | 904 | 589049652 | 589049407 | 2.830000e-51 | 213.0 |
20 | TraesCS5B01G483400 | chr1B | 89.002 | 591 | 57 | 8 | 25 | 610 | 534740274 | 534740861 | 0.000000e+00 | 725.0 |
21 | TraesCS5B01G483400 | chr1B | 86.922 | 627 | 70 | 11 | 25 | 645 | 25433672 | 25434292 | 0.000000e+00 | 693.0 |
22 | TraesCS5B01G483400 | chr1B | 82.983 | 476 | 45 | 16 | 424 | 867 | 539601251 | 539600780 | 7.280000e-107 | 398.0 |
23 | TraesCS5B01G483400 | chr6A | 78.833 | 737 | 92 | 33 | 211 | 908 | 615623683 | 615622972 | 4.290000e-119 | 438.0 |
24 | TraesCS5B01G483400 | chr6D | 87.209 | 258 | 30 | 3 | 647 | 902 | 83282573 | 83282829 | 1.270000e-74 | 291.0 |
25 | TraesCS5B01G483400 | chr3D | 87.251 | 251 | 29 | 3 | 647 | 896 | 515024078 | 515023830 | 2.130000e-72 | 283.0 |
26 | TraesCS5B01G483400 | chr7A | 94.231 | 52 | 2 | 1 | 857 | 908 | 62532962 | 62532912 | 1.080000e-10 | 78.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G483400 | chr5B | 655207942 | 655211559 | 3617 | True | 6682.00 | 6682 | 100.00000 | 1 | 3618 | 1 | chr5B.!!$R3 | 3617 |
1 | TraesCS5B01G483400 | chr5B | 333191570 | 333192475 | 905 | False | 1029.00 | 1029 | 87.78900 | 25 | 899 | 1 | chr5B.!!$F1 | 874 |
2 | TraesCS5B01G483400 | chr5B | 425180987 | 425181888 | 901 | True | 952.00 | 952 | 86.29400 | 25 | 902 | 1 | chr5B.!!$R2 | 877 |
3 | TraesCS5B01G483400 | chr5A | 647485323 | 647487952 | 2629 | True | 1538.00 | 2763 | 86.21700 | 945 | 3618 | 2 | chr5A.!!$R2 | 2673 |
4 | TraesCS5B01G483400 | chr5A | 543565163 | 543566029 | 866 | True | 628.00 | 628 | 80.74300 | 64 | 902 | 1 | chr5A.!!$R1 | 838 |
5 | TraesCS5B01G483400 | chr5D | 520198502 | 520201186 | 2684 | True | 886.00 | 2590 | 91.08925 | 903 | 3618 | 4 | chr5D.!!$R1 | 2715 |
6 | TraesCS5B01G483400 | chr3A | 170977275 | 170980793 | 3518 | False | 803.75 | 2198 | 91.08900 | 940 | 3618 | 4 | chr3A.!!$F1 | 2678 |
7 | TraesCS5B01G483400 | chr4B | 440918100 | 440919012 | 912 | False | 1495.00 | 1495 | 96.38900 | 1 | 903 | 1 | chr4B.!!$F1 | 902 |
8 | TraesCS5B01G483400 | chr2B | 649944590 | 649945435 | 845 | True | 1016.00 | 1016 | 88.22200 | 25 | 903 | 1 | chr2B.!!$R1 | 878 |
9 | TraesCS5B01G483400 | chr6B | 6667224 | 6668120 | 896 | False | 896.00 | 896 | 85.33900 | 26 | 902 | 1 | chr6B.!!$F1 | 876 |
10 | TraesCS5B01G483400 | chr6B | 6612430 | 6613329 | 899 | True | 872.00 | 872 | 84.75900 | 25 | 902 | 1 | chr6B.!!$R1 | 877 |
11 | TraesCS5B01G483400 | chr1B | 534740274 | 534740861 | 587 | False | 725.00 | 725 | 89.00200 | 25 | 610 | 1 | chr1B.!!$F2 | 585 |
12 | TraesCS5B01G483400 | chr1B | 25433672 | 25434292 | 620 | False | 693.00 | 693 | 86.92200 | 25 | 645 | 1 | chr1B.!!$F1 | 620 |
13 | TraesCS5B01G483400 | chr6A | 615622972 | 615623683 | 711 | True | 438.00 | 438 | 78.83300 | 211 | 908 | 1 | chr6A.!!$R1 | 697 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
717 | 790 | 0.173708 | GGCAGCAGTAGTCGTTAGCT | 59.826 | 55.0 | 0.0 | 0.0 | 35.63 | 3.32 | F |
1882 | 2001 | 0.259647 | TCATTGAGGCATTGGGGAGG | 59.740 | 55.0 | 0.0 | 0.0 | 0.00 | 4.30 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1926 | 2050 | 1.067582 | GGACCGTATCCCTCTTGCG | 59.932 | 63.158 | 0.0 | 0.0 | 42.46 | 4.85 | R |
3216 | 4312 | 0.878416 | GTAGAATGTGCCCGTTTGCA | 59.122 | 50.000 | 0.0 | 0.0 | 39.37 | 4.08 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
58 | 68 | 5.583495 | TGTTCGGGAGTTTAACAAATGTTG | 58.417 | 37.500 | 8.99 | 0.00 | 38.90 | 3.33 |
209 | 230 | 4.920376 | ACAAATTTTGGTCAGAACGTGAG | 58.080 | 39.130 | 13.42 | 0.00 | 35.13 | 3.51 |
353 | 379 | 7.631750 | CGCGATTTCAATTATTTGTTCCAATTG | 59.368 | 33.333 | 0.00 | 0.00 | 34.32 | 2.32 |
717 | 790 | 0.173708 | GGCAGCAGTAGTCGTTAGCT | 59.826 | 55.000 | 0.00 | 0.00 | 35.63 | 3.32 |
778 | 867 | 1.080093 | TTCGATTCTTGGTCGCGCT | 60.080 | 52.632 | 5.56 | 0.00 | 38.88 | 5.92 |
938 | 1032 | 1.257743 | TCACCCTCTGACTTTCCTCG | 58.742 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
997 | 1101 | 0.736325 | CCAAACTCCGGTGAGCGTAG | 60.736 | 60.000 | 11.17 | 0.00 | 42.74 | 3.51 |
1114 | 1221 | 2.361771 | CCAAATCAGCCCCAGCCT | 59.638 | 61.111 | 0.00 | 0.00 | 41.25 | 4.58 |
1127 | 1234 | 4.406763 | AGCCTCCGCTCCCCTTCT | 62.407 | 66.667 | 0.00 | 0.00 | 43.95 | 2.85 |
1142 | 1249 | 1.215423 | CCTTCTCCCCATTAACCCCAG | 59.785 | 57.143 | 0.00 | 0.00 | 0.00 | 4.45 |
1481 | 1600 | 3.691575 | TGGAGGTAATGCGGAAAAATGA | 58.308 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
1503 | 1622 | 1.719529 | TCTTTCCGGACCTAACCACA | 58.280 | 50.000 | 1.83 | 0.00 | 0.00 | 4.17 |
1513 | 1632 | 1.066858 | ACCTAACCACACTGCAGATCG | 60.067 | 52.381 | 23.35 | 10.83 | 0.00 | 3.69 |
1533 | 1652 | 2.159043 | CGTCATGGATACTCTGGTTGCT | 60.159 | 50.000 | 0.00 | 0.00 | 37.61 | 3.91 |
1686 | 1805 | 2.580867 | GCCAGCTCGCTCGTACAG | 60.581 | 66.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1687 | 1806 | 2.103143 | CCAGCTCGCTCGTACAGG | 59.897 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
1688 | 1807 | 2.701780 | CCAGCTCGCTCGTACAGGT | 61.702 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
1689 | 1808 | 1.213013 | CAGCTCGCTCGTACAGGTT | 59.787 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
1690 | 1809 | 1.073216 | CAGCTCGCTCGTACAGGTTG | 61.073 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1691 | 1810 | 2.445438 | GCTCGCTCGTACAGGTTGC | 61.445 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
1692 | 1811 | 1.805945 | CTCGCTCGTACAGGTTGCC | 60.806 | 63.158 | 0.00 | 0.00 | 0.00 | 4.52 |
1693 | 1812 | 2.813908 | CGCTCGTACAGGTTGCCC | 60.814 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
1694 | 1813 | 2.345991 | GCTCGTACAGGTTGCCCA | 59.654 | 61.111 | 0.00 | 0.00 | 0.00 | 5.36 |
1695 | 1814 | 1.741770 | GCTCGTACAGGTTGCCCAG | 60.742 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
1696 | 1815 | 1.741770 | CTCGTACAGGTTGCCCAGC | 60.742 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
1697 | 1816 | 2.172483 | CTCGTACAGGTTGCCCAGCT | 62.172 | 60.000 | 0.00 | 0.00 | 0.00 | 4.24 |
1698 | 1817 | 1.741770 | CGTACAGGTTGCCCAGCTC | 60.742 | 63.158 | 0.00 | 0.00 | 0.00 | 4.09 |
1699 | 1818 | 1.741770 | GTACAGGTTGCCCAGCTCG | 60.742 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
1700 | 1819 | 3.605749 | TACAGGTTGCCCAGCTCGC | 62.606 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
1701 | 1820 | 4.711949 | CAGGTTGCCCAGCTCGCT | 62.712 | 66.667 | 4.06 | 0.00 | 0.00 | 4.93 |
1702 | 1821 | 4.400961 | AGGTTGCCCAGCTCGCTC | 62.401 | 66.667 | 4.06 | 0.00 | 0.00 | 5.03 |
1705 | 1824 | 3.378602 | TTGCCCAGCTCGCTCGTA | 61.379 | 61.111 | 4.06 | 0.00 | 0.00 | 3.43 |
1706 | 1825 | 3.642778 | TTGCCCAGCTCGCTCGTAC | 62.643 | 63.158 | 4.06 | 0.00 | 0.00 | 3.67 |
1707 | 1826 | 4.129737 | GCCCAGCTCGCTCGTACA | 62.130 | 66.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1711 | 1830 | 1.213013 | CAGCTCGCTCGTACAGGTT | 59.787 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
1821 | 1940 | 5.546416 | CAGCATTTCTGGGCAATGATGCA | 62.546 | 47.826 | 8.58 | 0.00 | 44.33 | 3.96 |
1881 | 2000 | 1.213678 | TCTCATTGAGGCATTGGGGAG | 59.786 | 52.381 | 13.59 | 0.00 | 0.00 | 4.30 |
1882 | 2001 | 0.259647 | TCATTGAGGCATTGGGGAGG | 59.740 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1883 | 2002 | 0.757935 | CATTGAGGCATTGGGGAGGG | 60.758 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1884 | 2003 | 2.594365 | ATTGAGGCATTGGGGAGGGC | 62.594 | 60.000 | 0.00 | 0.00 | 34.40 | 5.19 |
1885 | 2004 | 3.743017 | GAGGCATTGGGGAGGGCA | 61.743 | 66.667 | 0.00 | 0.00 | 37.02 | 5.36 |
1926 | 2050 | 2.627699 | TCAGGGTGTTTGAGAAAATGGC | 59.372 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1939 | 2063 | 1.680338 | AAATGGCGCAAGAGGGATAC | 58.320 | 50.000 | 10.83 | 0.00 | 43.02 | 2.24 |
2031 | 2155 | 7.553044 | GTCCATTAGGTATTACAAGGATATGGC | 59.447 | 40.741 | 0.00 | 0.00 | 35.89 | 4.40 |
2317 | 2441 | 1.006220 | CAGGTTTGGGAAAAGCGGC | 60.006 | 57.895 | 0.00 | 0.00 | 35.49 | 6.53 |
2434 | 2558 | 2.283145 | AGGTTGATGCTGCTGTTTCT | 57.717 | 45.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2497 | 2621 | 7.121315 | GGGAGAGTTGTTTATAGCAAACTGAAT | 59.879 | 37.037 | 2.00 | 0.00 | 0.00 | 2.57 |
2596 | 2720 | 3.740044 | AATTCACGCAACTATTGTCGG | 57.260 | 42.857 | 9.16 | 1.59 | 35.52 | 4.79 |
2612 | 2736 | 2.414785 | CGGGCTAATGGTTGGCACC | 61.415 | 63.158 | 0.00 | 0.00 | 44.56 | 5.01 |
2630 | 2754 | 4.158394 | GGCACCTGTGATTTGTGAACATAT | 59.842 | 41.667 | 0.51 | 0.00 | 31.66 | 1.78 |
2633 | 2757 | 7.312154 | GCACCTGTGATTTGTGAACATATTTA | 58.688 | 34.615 | 0.51 | 0.00 | 31.66 | 1.40 |
2635 | 2759 | 7.485913 | CACCTGTGATTTGTGAACATATTTAGC | 59.514 | 37.037 | 0.00 | 0.00 | 31.66 | 3.09 |
2643 | 2767 | 3.374058 | GTGAACATATTTAGCTGGCACGT | 59.626 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
2663 | 2787 | 4.873827 | ACGTAACTATTTGGTATGCTGGTG | 59.126 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
2738 | 3736 | 2.583143 | AGTTTGGCTGGTGAAAGGTAC | 58.417 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
2801 | 3844 | 6.726258 | CATGCATACCATGTTATCGTGTAT | 57.274 | 37.500 | 0.00 | 0.00 | 45.05 | 2.29 |
2802 | 3845 | 7.826260 | CATGCATACCATGTTATCGTGTATA | 57.174 | 36.000 | 0.00 | 0.00 | 45.05 | 1.47 |
2803 | 3846 | 8.424274 | CATGCATACCATGTTATCGTGTATAT | 57.576 | 34.615 | 0.00 | 0.00 | 45.05 | 0.86 |
2804 | 3847 | 9.528018 | CATGCATACCATGTTATCGTGTATATA | 57.472 | 33.333 | 0.00 | 0.00 | 45.05 | 0.86 |
2874 | 3917 | 6.073327 | TGATGAGTAGTGGATTAAGTAGCG | 57.927 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
2892 | 3935 | 3.764885 | GCGGAAAGCTACATGAAACAT | 57.235 | 42.857 | 0.00 | 0.00 | 44.04 | 2.71 |
2902 | 3945 | 6.672147 | AGCTACATGAAACATTGAGACAAAC | 58.328 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2911 | 3955 | 8.819015 | TGAAACATTGAGACAAACAATCAAATG | 58.181 | 29.630 | 0.00 | 0.00 | 36.59 | 2.32 |
2919 | 3963 | 6.981722 | AGACAAACAATCAAATGGGTAGAAC | 58.018 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2928 | 3972 | 5.253330 | TCAAATGGGTAGAACAGAATGGAC | 58.747 | 41.667 | 0.00 | 0.00 | 43.62 | 4.02 |
2945 | 3989 | 5.947228 | ATGGACAGACATGTACTGTTTTG | 57.053 | 39.130 | 23.09 | 7.92 | 46.57 | 2.44 |
2967 | 4011 | 1.963515 | TGTGTACTTCTGCTGCTCTGA | 59.036 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
3039 | 4123 | 2.555227 | GGGGAAATGCAGAGAACTTGGA | 60.555 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
3078 | 4173 | 6.904626 | AGCCTGATGTATCCTTGAATAACTT | 58.095 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
3154 | 4250 | 7.116948 | CCGATCCTTAGCTGAACTTGTTATATG | 59.883 | 40.741 | 0.00 | 0.00 | 0.00 | 1.78 |
3155 | 4251 | 7.867909 | CGATCCTTAGCTGAACTTGTTATATGA | 59.132 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
3156 | 4252 | 9.717942 | GATCCTTAGCTGAACTTGTTATATGAT | 57.282 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
3157 | 4253 | 8.893219 | TCCTTAGCTGAACTTGTTATATGATG | 57.107 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
3158 | 4254 | 7.442364 | TCCTTAGCTGAACTTGTTATATGATGC | 59.558 | 37.037 | 0.00 | 0.00 | 0.00 | 3.91 |
3159 | 4255 | 7.308229 | CCTTAGCTGAACTTGTTATATGATGCC | 60.308 | 40.741 | 0.00 | 0.00 | 0.00 | 4.40 |
3160 | 4256 | 5.439721 | AGCTGAACTTGTTATATGATGCCA | 58.560 | 37.500 | 0.00 | 0.00 | 0.00 | 4.92 |
3161 | 4257 | 5.530171 | AGCTGAACTTGTTATATGATGCCAG | 59.470 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3162 | 4258 | 5.297776 | GCTGAACTTGTTATATGATGCCAGT | 59.702 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3163 | 4259 | 6.183360 | GCTGAACTTGTTATATGATGCCAGTT | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
3164 | 4260 | 7.012327 | GCTGAACTTGTTATATGATGCCAGTTA | 59.988 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
3165 | 4261 | 8.978874 | TGAACTTGTTATATGATGCCAGTTAT | 57.021 | 30.769 | 0.00 | 0.00 | 0.00 | 1.89 |
3166 | 4262 | 9.056005 | TGAACTTGTTATATGATGCCAGTTATC | 57.944 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3167 | 4263 | 8.978874 | AACTTGTTATATGATGCCAGTTATCA | 57.021 | 30.769 | 0.00 | 0.00 | 38.76 | 2.15 |
3168 | 4264 | 9.578576 | AACTTGTTATATGATGCCAGTTATCAT | 57.421 | 29.630 | 0.00 | 0.00 | 44.86 | 2.45 |
3178 | 4274 | 9.970553 | ATGATGCCAGTTATCATATATGAAGTT | 57.029 | 29.630 | 19.03 | 6.07 | 41.99 | 2.66 |
3179 | 4275 | 9.440773 | TGATGCCAGTTATCATATATGAAGTTC | 57.559 | 33.333 | 19.03 | 10.06 | 40.69 | 3.01 |
3180 | 4276 | 9.440773 | GATGCCAGTTATCATATATGAAGTTCA | 57.559 | 33.333 | 19.03 | 8.27 | 40.69 | 3.18 |
3181 | 4277 | 9.797642 | ATGCCAGTTATCATATATGAAGTTCAA | 57.202 | 29.630 | 19.03 | 6.31 | 40.69 | 2.69 |
3182 | 4278 | 9.797642 | TGCCAGTTATCATATATGAAGTTCAAT | 57.202 | 29.630 | 19.03 | 7.57 | 40.69 | 2.57 |
3191 | 4287 | 8.685427 | TCATATATGAAGTTCAATTGTTGTGGG | 58.315 | 33.333 | 13.12 | 0.00 | 33.08 | 4.61 |
3192 | 4288 | 6.916360 | ATATGAAGTTCAATTGTTGTGGGT | 57.084 | 33.333 | 10.14 | 0.00 | 0.00 | 4.51 |
3193 | 4289 | 5.612725 | ATGAAGTTCAATTGTTGTGGGTT | 57.387 | 34.783 | 10.14 | 0.00 | 0.00 | 4.11 |
3194 | 4290 | 6.723298 | ATGAAGTTCAATTGTTGTGGGTTA | 57.277 | 33.333 | 10.14 | 0.00 | 0.00 | 2.85 |
3195 | 4291 | 6.723298 | TGAAGTTCAATTGTTGTGGGTTAT | 57.277 | 33.333 | 2.20 | 0.00 | 0.00 | 1.89 |
3196 | 4292 | 6.744112 | TGAAGTTCAATTGTTGTGGGTTATC | 58.256 | 36.000 | 2.20 | 0.00 | 0.00 | 1.75 |
3197 | 4293 | 6.322456 | TGAAGTTCAATTGTTGTGGGTTATCA | 59.678 | 34.615 | 2.20 | 0.00 | 0.00 | 2.15 |
3198 | 4294 | 6.916360 | AGTTCAATTGTTGTGGGTTATCAT | 57.084 | 33.333 | 5.13 | 0.00 | 0.00 | 2.45 |
3199 | 4295 | 8.415950 | AAGTTCAATTGTTGTGGGTTATCATA | 57.584 | 30.769 | 5.13 | 0.00 | 0.00 | 2.15 |
3200 | 4296 | 8.593945 | AGTTCAATTGTTGTGGGTTATCATAT | 57.406 | 30.769 | 5.13 | 0.00 | 0.00 | 1.78 |
3201 | 4297 | 9.693739 | AGTTCAATTGTTGTGGGTTATCATATA | 57.306 | 29.630 | 5.13 | 0.00 | 0.00 | 0.86 |
3204 | 4300 | 9.467796 | TCAATTGTTGTGGGTTATCATATAACA | 57.532 | 29.630 | 5.13 | 0.00 | 0.00 | 2.41 |
3207 | 4303 | 8.871629 | TTGTTGTGGGTTATCATATAACAAGT | 57.128 | 30.769 | 10.92 | 0.00 | 33.44 | 3.16 |
3208 | 4304 | 8.871629 | TGTTGTGGGTTATCATATAACAAGTT | 57.128 | 30.769 | 10.92 | 0.00 | 0.00 | 2.66 |
3209 | 4305 | 9.961264 | TGTTGTGGGTTATCATATAACAAGTTA | 57.039 | 29.630 | 10.92 | 0.00 | 0.00 | 2.24 |
3424 | 4522 | 3.625764 | GGTGTTACTCTTTGTTCTGCACA | 59.374 | 43.478 | 0.00 | 0.00 | 0.00 | 4.57 |
3425 | 4523 | 4.495844 | GGTGTTACTCTTTGTTCTGCACAC | 60.496 | 45.833 | 0.00 | 0.00 | 33.98 | 3.82 |
3481 | 4580 | 8.367911 | TCTGTAACTACCTATGCCATTATCTTG | 58.632 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
3495 | 4594 | 2.604046 | ATCTTGACACGATGTAGGCC | 57.396 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3500 | 4599 | 1.079405 | ACACGATGTAGGCCGTTGG | 60.079 | 57.895 | 0.00 | 0.00 | 36.83 | 3.77 |
3501 | 4600 | 1.813753 | CACGATGTAGGCCGTTGGG | 60.814 | 63.158 | 0.00 | 0.00 | 36.83 | 4.12 |
3520 | 4625 | 2.491693 | GGGTTTTCATGAAGATGCGGAA | 59.508 | 45.455 | 8.41 | 0.00 | 0.00 | 4.30 |
3524 | 4629 | 5.401550 | GTTTTCATGAAGATGCGGAATCAA | 58.598 | 37.500 | 8.41 | 0.00 | 37.81 | 2.57 |
3534 | 4639 | 7.500227 | TGAAGATGCGGAATCAAGAGATAATTT | 59.500 | 33.333 | 0.00 | 0.00 | 37.81 | 1.82 |
3556 | 4661 | 2.012673 | CCAGAACAGTTGCTATCAGGC | 58.987 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 7.674471 | AAACTCCCGAACAAAATTTCAAAAA | 57.326 | 28.000 | 0.00 | 0.00 | 0.00 | 1.94 |
58 | 68 | 8.903570 | AATTTCGAACAAAATTTGAAAAACCC | 57.096 | 26.923 | 13.19 | 0.00 | 35.78 | 4.11 |
209 | 230 | 7.449934 | ACATTTTCTGAAACGTGAACATTTC | 57.550 | 32.000 | 16.91 | 0.00 | 35.73 | 2.17 |
353 | 379 | 6.317789 | TGAAAAGTGGAGACATTTCATGAC | 57.682 | 37.500 | 0.00 | 0.00 | 41.79 | 3.06 |
717 | 790 | 1.472878 | CAAGCACTACTAGCCACTCGA | 59.527 | 52.381 | 0.00 | 0.00 | 0.00 | 4.04 |
997 | 1101 | 2.517166 | GAGGAGGCGGGCCATTTC | 60.517 | 66.667 | 12.97 | 0.48 | 38.92 | 2.17 |
1089 | 1196 | 1.543944 | GGGCTGATTTGGTGGGGTTG | 61.544 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1114 | 1221 | 4.798682 | GGGGAGAAGGGGAGCGGA | 62.799 | 72.222 | 0.00 | 0.00 | 0.00 | 5.54 |
1127 | 1234 | 0.922243 | GGGACTGGGGTTAATGGGGA | 60.922 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
1383 | 1502 | 3.267483 | GTTGCAGGTATGTACGGAATGT | 58.733 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
1385 | 1504 | 3.620427 | TGTTGCAGGTATGTACGGAAT | 57.380 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
1446 | 1565 | 4.704103 | TCCAGGGCAGGCTCGACT | 62.704 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
1481 | 1600 | 2.027469 | GTGGTTAGGTCCGGAAAGATGT | 60.027 | 50.000 | 5.23 | 0.00 | 0.00 | 3.06 |
1503 | 1622 | 2.961741 | AGTATCCATGACGATCTGCAGT | 59.038 | 45.455 | 14.67 | 0.42 | 0.00 | 4.40 |
1513 | 1632 | 3.201290 | CAGCAACCAGAGTATCCATGAC | 58.799 | 50.000 | 0.00 | 0.00 | 33.66 | 3.06 |
1533 | 1652 | 1.529010 | CTTGTTGACCTGCCTGGCA | 60.529 | 57.895 | 21.96 | 21.96 | 40.22 | 4.92 |
1687 | 1806 | 3.642778 | TACGAGCGAGCTGGGCAAC | 62.643 | 63.158 | 11.55 | 2.33 | 0.00 | 4.17 |
1688 | 1807 | 3.378602 | TACGAGCGAGCTGGGCAA | 61.379 | 61.111 | 11.55 | 0.00 | 0.00 | 4.52 |
1689 | 1808 | 4.129737 | GTACGAGCGAGCTGGGCA | 62.130 | 66.667 | 11.55 | 0.00 | 0.00 | 5.36 |
1690 | 1809 | 4.129737 | TGTACGAGCGAGCTGGGC | 62.130 | 66.667 | 11.55 | 0.00 | 0.00 | 5.36 |
1691 | 1810 | 2.103143 | CTGTACGAGCGAGCTGGG | 59.897 | 66.667 | 11.55 | 2.09 | 0.00 | 4.45 |
1692 | 1811 | 2.103143 | CCTGTACGAGCGAGCTGG | 59.897 | 66.667 | 0.84 | 3.56 | 0.00 | 4.85 |
1693 | 1812 | 1.073216 | CAACCTGTACGAGCGAGCTG | 61.073 | 60.000 | 0.84 | 0.00 | 0.00 | 4.24 |
1694 | 1813 | 1.213013 | CAACCTGTACGAGCGAGCT | 59.787 | 57.895 | 0.00 | 0.00 | 0.00 | 4.09 |
1695 | 1814 | 2.445438 | GCAACCTGTACGAGCGAGC | 61.445 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
1696 | 1815 | 1.805945 | GGCAACCTGTACGAGCGAG | 60.806 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
1697 | 1816 | 2.260434 | GGCAACCTGTACGAGCGA | 59.740 | 61.111 | 0.00 | 0.00 | 0.00 | 4.93 |
1821 | 1940 | 3.978164 | GCACTAGCCCATCCTCCT | 58.022 | 61.111 | 0.00 | 0.00 | 33.58 | 3.69 |
1840 | 1959 | 2.093890 | TGGCAATGCGAAACATCATCT | 58.906 | 42.857 | 0.00 | 0.00 | 38.34 | 2.90 |
1926 | 2050 | 1.067582 | GGACCGTATCCCTCTTGCG | 59.932 | 63.158 | 0.00 | 0.00 | 42.46 | 4.85 |
1939 | 2063 | 1.520787 | GGCCATCGTAGTTGGACCG | 60.521 | 63.158 | 0.00 | 0.00 | 36.14 | 4.79 |
1984 | 2108 | 1.075374 | CTGTCCAAATCCCCCAGTGAA | 59.925 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
2011 | 2135 | 5.186409 | GTCCGCCATATCCTTGTAATACCTA | 59.814 | 44.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2317 | 2441 | 3.243501 | CCTCCCAAATGTTCAACACTGTG | 60.244 | 47.826 | 6.19 | 6.19 | 0.00 | 3.66 |
2434 | 2558 | 2.571653 | CCTAAGTGATTCCTCCACCACA | 59.428 | 50.000 | 0.00 | 0.00 | 35.23 | 4.17 |
2497 | 2621 | 1.600638 | CATCTCCAGCAGCCTGTCA | 59.399 | 57.895 | 0.00 | 0.00 | 37.38 | 3.58 |
2612 | 2736 | 7.699391 | CCAGCTAAATATGTTCACAAATCACAG | 59.301 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
2630 | 2754 | 4.393680 | CCAAATAGTTACGTGCCAGCTAAA | 59.606 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
2633 | 2757 | 2.290071 | ACCAAATAGTTACGTGCCAGCT | 60.290 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
2635 | 2759 | 4.260620 | GCATACCAAATAGTTACGTGCCAG | 60.261 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
2643 | 2767 | 6.094881 | GCTTTCACCAGCATACCAAATAGTTA | 59.905 | 38.462 | 0.00 | 0.00 | 39.83 | 2.24 |
2663 | 2787 | 6.524101 | TTAAACCCATATGGAACTGCTTTC | 57.476 | 37.500 | 24.00 | 0.00 | 37.39 | 2.62 |
2738 | 3736 | 7.819415 | TGTCAGAAATATGGACAGTCAAGTAAG | 59.181 | 37.037 | 2.17 | 0.00 | 36.69 | 2.34 |
2739 | 3737 | 7.676004 | TGTCAGAAATATGGACAGTCAAGTAA | 58.324 | 34.615 | 2.17 | 0.00 | 36.69 | 2.24 |
2740 | 3738 | 7.239763 | TGTCAGAAATATGGACAGTCAAGTA | 57.760 | 36.000 | 2.17 | 0.00 | 36.69 | 2.24 |
2741 | 3739 | 6.114187 | TGTCAGAAATATGGACAGTCAAGT | 57.886 | 37.500 | 2.17 | 0.00 | 36.69 | 3.16 |
2750 | 3762 | 5.263599 | AGCCAAACATGTCAGAAATATGGA | 58.736 | 37.500 | 0.00 | 0.00 | 31.12 | 3.41 |
2755 | 3767 | 7.230849 | TGAAATAGCCAAACATGTCAGAAAT | 57.769 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2803 | 3846 | 8.527810 | CCCCATCAAAACTAGCAAGTAAAAATA | 58.472 | 33.333 | 0.00 | 0.00 | 33.75 | 1.40 |
2804 | 3847 | 7.016170 | ACCCCATCAAAACTAGCAAGTAAAAAT | 59.984 | 33.333 | 0.00 | 0.00 | 33.75 | 1.82 |
2805 | 3848 | 6.325286 | ACCCCATCAAAACTAGCAAGTAAAAA | 59.675 | 34.615 | 0.00 | 0.00 | 33.75 | 1.94 |
2806 | 3849 | 5.836358 | ACCCCATCAAAACTAGCAAGTAAAA | 59.164 | 36.000 | 0.00 | 0.00 | 33.75 | 1.52 |
2807 | 3850 | 5.390387 | ACCCCATCAAAACTAGCAAGTAAA | 58.610 | 37.500 | 0.00 | 0.00 | 33.75 | 2.01 |
2808 | 3851 | 4.993028 | ACCCCATCAAAACTAGCAAGTAA | 58.007 | 39.130 | 0.00 | 0.00 | 33.75 | 2.24 |
2809 | 3852 | 4.650972 | ACCCCATCAAAACTAGCAAGTA | 57.349 | 40.909 | 0.00 | 0.00 | 33.75 | 2.24 |
2810 | 3853 | 3.525800 | ACCCCATCAAAACTAGCAAGT | 57.474 | 42.857 | 0.00 | 0.00 | 37.65 | 3.16 |
2811 | 3854 | 6.378280 | AGAATAACCCCATCAAAACTAGCAAG | 59.622 | 38.462 | 0.00 | 0.00 | 0.00 | 4.01 |
2812 | 3855 | 6.152661 | CAGAATAACCCCATCAAAACTAGCAA | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 3.91 |
2813 | 3856 | 5.652014 | CAGAATAACCCCATCAAAACTAGCA | 59.348 | 40.000 | 0.00 | 0.00 | 0.00 | 3.49 |
2814 | 3857 | 5.885912 | TCAGAATAACCCCATCAAAACTAGC | 59.114 | 40.000 | 0.00 | 0.00 | 0.00 | 3.42 |
2815 | 3858 | 7.112779 | AGTCAGAATAACCCCATCAAAACTAG | 58.887 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2816 | 3859 | 7.027874 | AGTCAGAATAACCCCATCAAAACTA | 57.972 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2817 | 3860 | 5.892348 | AGTCAGAATAACCCCATCAAAACT | 58.108 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
2818 | 3861 | 7.696992 | TTAGTCAGAATAACCCCATCAAAAC | 57.303 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2819 | 3862 | 8.893563 | ATTTAGTCAGAATAACCCCATCAAAA | 57.106 | 30.769 | 0.00 | 0.00 | 0.00 | 2.44 |
2820 | 3863 | 8.336235 | AGATTTAGTCAGAATAACCCCATCAAA | 58.664 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2821 | 3864 | 7.872138 | AGATTTAGTCAGAATAACCCCATCAA | 58.128 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2822 | 3865 | 7.451731 | AGATTTAGTCAGAATAACCCCATCA | 57.548 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2823 | 3866 | 7.255277 | GCAAGATTTAGTCAGAATAACCCCATC | 60.255 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
2824 | 3867 | 6.547510 | GCAAGATTTAGTCAGAATAACCCCAT | 59.452 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
2825 | 3868 | 5.885912 | GCAAGATTTAGTCAGAATAACCCCA | 59.114 | 40.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2874 | 3917 | 6.072508 | TGTCTCAATGTTTCATGTAGCTTTCC | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
2886 | 3929 | 8.277713 | CCATTTGATTGTTTGTCTCAATGTTTC | 58.722 | 33.333 | 0.00 | 0.00 | 35.94 | 2.78 |
2892 | 3935 | 5.867903 | ACCCATTTGATTGTTTGTCTCAA | 57.132 | 34.783 | 0.00 | 0.00 | 0.00 | 3.02 |
2902 | 3945 | 6.377996 | TCCATTCTGTTCTACCCATTTGATTG | 59.622 | 38.462 | 0.00 | 0.00 | 0.00 | 2.67 |
2911 | 3955 | 3.260884 | TGTCTGTCCATTCTGTTCTACCC | 59.739 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
2919 | 3963 | 4.825422 | ACAGTACATGTCTGTCCATTCTG | 58.175 | 43.478 | 19.10 | 10.56 | 41.52 | 3.02 |
2928 | 3972 | 5.879237 | ACACAACAAAACAGTACATGTCTG | 58.121 | 37.500 | 18.12 | 18.12 | 43.00 | 3.51 |
2945 | 3989 | 2.478134 | CAGAGCAGCAGAAGTACACAAC | 59.522 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2967 | 4011 | 8.105829 | AGATTCCATCTGATGTTTGTAGTTCTT | 58.894 | 33.333 | 15.95 | 0.00 | 38.44 | 2.52 |
3017 | 4061 | 2.517959 | CAAGTTCTCTGCATTTCCCCA | 58.482 | 47.619 | 0.00 | 0.00 | 0.00 | 4.96 |
3099 | 4195 | 7.813645 | ACCGGTTCAACTTTCAAGTATTAATC | 58.186 | 34.615 | 0.00 | 0.00 | 38.57 | 1.75 |
3101 | 4197 | 7.388500 | CCTACCGGTTCAACTTTCAAGTATTAA | 59.612 | 37.037 | 15.04 | 0.00 | 38.57 | 1.40 |
3132 | 4228 | 7.442364 | GCATCATATAACAAGTTCAGCTAAGGA | 59.558 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
3138 | 4234 | 5.297776 | ACTGGCATCATATAACAAGTTCAGC | 59.702 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3154 | 4250 | 9.440773 | TGAACTTCATATATGATAACTGGCATC | 57.559 | 33.333 | 16.06 | 6.00 | 36.56 | 3.91 |
3155 | 4251 | 9.797642 | TTGAACTTCATATATGATAACTGGCAT | 57.202 | 29.630 | 16.06 | 0.00 | 36.56 | 4.40 |
3156 | 4252 | 9.797642 | ATTGAACTTCATATATGATAACTGGCA | 57.202 | 29.630 | 16.06 | 6.22 | 36.56 | 4.92 |
3165 | 4261 | 8.685427 | CCCACAACAATTGAACTTCATATATGA | 58.315 | 33.333 | 13.59 | 11.49 | 34.44 | 2.15 |
3166 | 4262 | 8.469200 | ACCCACAACAATTGAACTTCATATATG | 58.531 | 33.333 | 13.59 | 6.36 | 0.00 | 1.78 |
3167 | 4263 | 8.593945 | ACCCACAACAATTGAACTTCATATAT | 57.406 | 30.769 | 13.59 | 0.00 | 0.00 | 0.86 |
3168 | 4264 | 8.415950 | AACCCACAACAATTGAACTTCATATA | 57.584 | 30.769 | 13.59 | 0.00 | 0.00 | 0.86 |
3169 | 4265 | 6.916360 | ACCCACAACAATTGAACTTCATAT | 57.084 | 33.333 | 13.59 | 0.00 | 0.00 | 1.78 |
3170 | 4266 | 6.723298 | AACCCACAACAATTGAACTTCATA | 57.277 | 33.333 | 13.59 | 0.00 | 0.00 | 2.15 |
3171 | 4267 | 5.612725 | AACCCACAACAATTGAACTTCAT | 57.387 | 34.783 | 13.59 | 0.00 | 0.00 | 2.57 |
3172 | 4268 | 6.322456 | TGATAACCCACAACAATTGAACTTCA | 59.678 | 34.615 | 13.59 | 0.00 | 0.00 | 3.02 |
3173 | 4269 | 6.744112 | TGATAACCCACAACAATTGAACTTC | 58.256 | 36.000 | 13.59 | 0.00 | 0.00 | 3.01 |
3174 | 4270 | 6.723298 | TGATAACCCACAACAATTGAACTT | 57.277 | 33.333 | 13.59 | 0.00 | 0.00 | 2.66 |
3175 | 4271 | 6.916360 | ATGATAACCCACAACAATTGAACT | 57.084 | 33.333 | 13.59 | 0.00 | 0.00 | 3.01 |
3178 | 4274 | 9.467796 | TGTTATATGATAACCCACAACAATTGA | 57.532 | 29.630 | 13.59 | 0.00 | 0.00 | 2.57 |
3181 | 4277 | 9.474313 | ACTTGTTATATGATAACCCACAACAAT | 57.526 | 29.630 | 6.85 | 0.00 | 35.01 | 2.71 |
3182 | 4278 | 8.871629 | ACTTGTTATATGATAACCCACAACAA | 57.128 | 30.769 | 6.85 | 0.00 | 34.51 | 2.83 |
3183 | 4279 | 8.871629 | AACTTGTTATATGATAACCCACAACA | 57.128 | 30.769 | 6.85 | 0.00 | 0.00 | 3.33 |
3198 | 4294 | 9.828852 | CCGTTTGCAATTAGTTAACTTGTTATA | 57.171 | 29.630 | 14.49 | 0.00 | 0.00 | 0.98 |
3199 | 4295 | 7.810759 | CCCGTTTGCAATTAGTTAACTTGTTAT | 59.189 | 33.333 | 14.49 | 0.29 | 0.00 | 1.89 |
3200 | 4296 | 7.140048 | CCCGTTTGCAATTAGTTAACTTGTTA | 58.860 | 34.615 | 14.49 | 0.00 | 0.00 | 2.41 |
3201 | 4297 | 5.980715 | CCCGTTTGCAATTAGTTAACTTGTT | 59.019 | 36.000 | 14.49 | 6.40 | 0.00 | 2.83 |
3202 | 4298 | 5.525199 | CCCGTTTGCAATTAGTTAACTTGT | 58.475 | 37.500 | 14.49 | 0.00 | 0.00 | 3.16 |
3203 | 4299 | 4.384547 | GCCCGTTTGCAATTAGTTAACTTG | 59.615 | 41.667 | 14.49 | 7.43 | 0.00 | 3.16 |
3204 | 4300 | 4.038162 | TGCCCGTTTGCAATTAGTTAACTT | 59.962 | 37.500 | 14.49 | 0.00 | 38.56 | 2.66 |
3205 | 4301 | 3.570550 | TGCCCGTTTGCAATTAGTTAACT | 59.429 | 39.130 | 13.68 | 13.68 | 38.56 | 2.24 |
3206 | 4302 | 3.671459 | GTGCCCGTTTGCAATTAGTTAAC | 59.329 | 43.478 | 0.00 | 0.00 | 44.11 | 2.01 |
3207 | 4303 | 3.318275 | TGTGCCCGTTTGCAATTAGTTAA | 59.682 | 39.130 | 0.00 | 0.00 | 44.11 | 2.01 |
3208 | 4304 | 2.885266 | TGTGCCCGTTTGCAATTAGTTA | 59.115 | 40.909 | 0.00 | 0.00 | 44.11 | 2.24 |
3209 | 4305 | 1.683917 | TGTGCCCGTTTGCAATTAGTT | 59.316 | 42.857 | 0.00 | 0.00 | 44.11 | 2.24 |
3210 | 4306 | 1.323412 | TGTGCCCGTTTGCAATTAGT | 58.677 | 45.000 | 0.00 | 0.00 | 44.11 | 2.24 |
3211 | 4307 | 2.652941 | ATGTGCCCGTTTGCAATTAG | 57.347 | 45.000 | 0.00 | 0.00 | 44.11 | 1.73 |
3212 | 4308 | 2.560542 | AGAATGTGCCCGTTTGCAATTA | 59.439 | 40.909 | 0.00 | 0.00 | 44.11 | 1.40 |
3213 | 4309 | 1.344114 | AGAATGTGCCCGTTTGCAATT | 59.656 | 42.857 | 0.00 | 0.00 | 44.11 | 2.32 |
3214 | 4310 | 0.968405 | AGAATGTGCCCGTTTGCAAT | 59.032 | 45.000 | 0.00 | 0.00 | 44.11 | 3.56 |
3215 | 4311 | 1.268352 | GTAGAATGTGCCCGTTTGCAA | 59.732 | 47.619 | 0.00 | 0.00 | 44.11 | 4.08 |
3216 | 4312 | 0.878416 | GTAGAATGTGCCCGTTTGCA | 59.122 | 50.000 | 0.00 | 0.00 | 39.37 | 4.08 |
3481 | 4580 | 1.082117 | CCAACGGCCTACATCGTGTC | 61.082 | 60.000 | 0.00 | 0.00 | 39.70 | 3.67 |
3495 | 4594 | 3.244976 | GCATCTTCATGAAAACCCAACG | 58.755 | 45.455 | 9.88 | 0.00 | 30.57 | 4.10 |
3500 | 4599 | 3.848272 | TTCCGCATCTTCATGAAAACC | 57.152 | 42.857 | 9.88 | 0.00 | 30.57 | 3.27 |
3501 | 4600 | 4.985413 | TGATTCCGCATCTTCATGAAAAC | 58.015 | 39.130 | 9.88 | 0.00 | 32.34 | 2.43 |
3520 | 4625 | 7.637511 | ACTGTTCTGGGAAATTATCTCTTGAT | 58.362 | 34.615 | 0.00 | 0.00 | 36.74 | 2.57 |
3524 | 4629 | 5.649831 | GCAACTGTTCTGGGAAATTATCTCT | 59.350 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3534 | 4639 | 2.237143 | CCTGATAGCAACTGTTCTGGGA | 59.763 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
3556 | 4661 | 6.259550 | TCACGTGATATATCAGTCCTCATG | 57.740 | 41.667 | 15.76 | 3.15 | 37.51 | 3.07 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.