Multiple sequence alignment - TraesCS5B01G482200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G482200 chr5B 100.000 2859 0 0 1 2859 654905641 654902783 0.000000e+00 5280.0
1 TraesCS5B01G482200 chr5B 86.935 199 20 1 1146 1344 654892797 654892605 4.800000e-53 219.0
2 TraesCS5B01G482200 chr5B 89.916 119 10 2 3 120 167332395 167332278 4.930000e-33 152.0
3 TraesCS5B01G482200 chr5B 86.777 121 14 2 1 120 390164454 390164573 1.790000e-27 134.0
4 TraesCS5B01G482200 chr5B 85.217 115 9 4 3 111 79142622 79142734 8.370000e-21 111.0
5 TraesCS5B01G482200 chr5D 88.733 1642 102 41 227 1821 519822665 519821060 0.000000e+00 1930.0
6 TraesCS5B01G482200 chr5D 87.444 446 40 6 2421 2858 519818152 519817715 1.530000e-137 499.0
7 TraesCS5B01G482200 chr5D 86.087 115 8 4 3 111 309577672 309577560 1.800000e-22 117.0
8 TraesCS5B01G482200 chr5D 77.273 176 38 2 2589 2763 531467959 531467785 5.040000e-18 102.0
9 TraesCS5B01G482200 chr5A 89.788 1371 67 23 388 1711 646597947 646596603 0.000000e+00 1688.0
10 TraesCS5B01G482200 chr5A 83.148 540 52 17 2347 2859 646568752 646568225 9.340000e-125 457.0
11 TraesCS5B01G482200 chr5A 80.346 636 51 31 659 1249 646833635 646833029 5.700000e-112 414.0
12 TraesCS5B01G482200 chr5A 85.714 217 22 2 1146 1359 646564834 646564624 1.330000e-53 220.0
13 TraesCS5B01G482200 chr5A 82.231 242 26 8 228 466 646848146 646847919 2.910000e-45 193.0
14 TraesCS5B01G482200 chr5A 95.588 68 3 0 324 391 646599423 646599356 3.010000e-20 110.0
15 TraesCS5B01G482200 chr5A 87.500 96 5 5 1777 1867 646596581 646596488 1.400000e-18 104.0
16 TraesCS5B01G482200 chr1B 91.736 121 8 2 1 120 185982467 185982586 1.760000e-37 167.0
17 TraesCS5B01G482200 chr1B 85.057 87 8 3 1923 2005 471180705 471180790 1.830000e-12 84.2
18 TraesCS5B01G482200 chr4A 91.304 115 8 2 6 119 687150994 687151107 3.810000e-34 156.0
19 TraesCS5B01G482200 chr1D 88.235 119 14 0 1 119 417988045 417988163 2.970000e-30 143.0
20 TraesCS5B01G482200 chr1D 84.127 63 10 0 2740 2802 115015390 115015328 8.550000e-06 62.1
21 TraesCS5B01G482200 chr1D 100.000 28 0 0 1977 2004 185128675 185128648 5.000000e-03 52.8
22 TraesCS5B01G482200 chr7B 87.179 117 13 2 4 119 226588840 226588725 6.430000e-27 132.0
23 TraesCS5B01G482200 chr7B 86.066 122 14 3 1 120 319659486 319659606 8.310000e-26 128.0
24 TraesCS5B01G482200 chr7B 91.525 59 5 0 2721 2779 647427539 647427597 6.570000e-12 82.4
25 TraesCS5B01G482200 chr7A 84.314 102 13 3 1925 2025 721874187 721874088 2.340000e-16 97.1
26 TraesCS5B01G482200 chr1A 92.105 38 2 1 1977 2013 400421254 400421291 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G482200 chr5B 654902783 654905641 2858 True 5280.0 5280 100.000000 1 2859 1 chr5B.!!$R3 2858
1 TraesCS5B01G482200 chr5D 519817715 519822665 4950 True 1214.5 1930 88.088500 227 2858 2 chr5D.!!$R3 2631
2 TraesCS5B01G482200 chr5A 646596488 646599423 2935 True 634.0 1688 90.958667 324 1867 3 chr5A.!!$R4 1543
3 TraesCS5B01G482200 chr5A 646833029 646833635 606 True 414.0 414 80.346000 659 1249 1 chr5A.!!$R1 590
4 TraesCS5B01G482200 chr5A 646564624 646568752 4128 True 338.5 457 84.431000 1146 2859 2 chr5A.!!$R3 1713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 2463 0.106819 GGTGCCTTGAGATCCAGCAT 60.107 55.0 0.0 0.0 35.62 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 7094 0.037734 TGTGGCTAGGTCTCACTCGA 59.962 55.0 0.0 0.0 33.04 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.038417 GCGTCAGTGCTCTGCGTT 61.038 61.111 23.36 0.00 40.46 4.84
19 20 1.945776 GCGTCAGTGCTCTGCGTTAC 61.946 60.000 23.36 12.37 40.46 2.50
20 21 1.665544 CGTCAGTGCTCTGCGTTACG 61.666 60.000 18.16 15.12 41.10 3.18
22 23 0.876399 TCAGTGCTCTGCGTTACGTA 59.124 50.000 10.95 0.00 41.10 3.57
24 25 2.094906 TCAGTGCTCTGCGTTACGTATT 60.095 45.455 10.95 0.00 41.10 1.89
25 26 3.127376 TCAGTGCTCTGCGTTACGTATTA 59.873 43.478 10.95 0.00 41.10 0.98
26 27 3.482472 CAGTGCTCTGCGTTACGTATTAG 59.518 47.826 6.63 3.95 34.79 1.73
27 28 2.787680 GTGCTCTGCGTTACGTATTAGG 59.212 50.000 6.63 0.00 0.00 2.69
28 29 1.785430 GCTCTGCGTTACGTATTAGGC 59.215 52.381 6.63 0.11 0.00 3.93
29 30 2.041966 CTCTGCGTTACGTATTAGGCG 58.958 52.381 6.63 0.00 0.00 5.52
30 31 0.501435 CTGCGTTACGTATTAGGCGC 59.499 55.000 6.63 16.30 44.29 6.53
31 32 2.580661 GCGTTACGTATTAGGCGCA 58.419 52.632 10.83 0.00 43.62 6.09
33 34 1.071698 GCGTTACGTATTAGGCGCAAG 60.072 52.381 10.83 0.00 43.62 4.01
35 36 2.599973 CGTTACGTATTAGGCGCAAGTT 59.400 45.455 10.83 0.00 41.68 2.66
36 37 3.301388 CGTTACGTATTAGGCGCAAGTTC 60.301 47.826 10.83 0.00 41.68 3.01
37 38 1.274596 ACGTATTAGGCGCAAGTTCG 58.725 50.000 10.83 9.10 41.68 3.95
38 39 0.575390 CGTATTAGGCGCAAGTTCGG 59.425 55.000 10.83 0.00 41.68 4.30
41 42 1.024579 ATTAGGCGCAAGTTCGGTGG 61.025 55.000 10.83 0.00 41.68 4.61
42 43 2.386064 TTAGGCGCAAGTTCGGTGGT 62.386 55.000 10.83 0.00 41.68 4.16
44 45 2.719354 GCGCAAGTTCGGTGGTTT 59.281 55.556 0.30 0.00 41.68 3.27
45 46 1.065109 GCGCAAGTTCGGTGGTTTT 59.935 52.632 0.30 0.00 41.68 2.43
46 47 0.526739 GCGCAAGTTCGGTGGTTTTT 60.527 50.000 0.30 0.00 41.68 1.94
66 67 4.383850 TTTGTGTCCTGGTTCAAATGTG 57.616 40.909 0.00 0.00 0.00 3.21
67 68 2.305928 TGTGTCCTGGTTCAAATGTGG 58.694 47.619 0.00 0.00 0.00 4.17
68 69 2.306847 GTGTCCTGGTTCAAATGTGGT 58.693 47.619 0.00 0.00 0.00 4.16
69 70 3.117851 TGTGTCCTGGTTCAAATGTGGTA 60.118 43.478 0.00 0.00 0.00 3.25
70 71 3.252458 GTGTCCTGGTTCAAATGTGGTAC 59.748 47.826 0.00 0.00 0.00 3.34
72 73 3.886505 GTCCTGGTTCAAATGTGGTACAA 59.113 43.478 0.00 0.00 44.16 2.41
73 74 4.339814 GTCCTGGTTCAAATGTGGTACAAA 59.660 41.667 0.00 0.00 44.16 2.83
83 84 5.777850 AATGTGGTACAAAGTTGTTACCC 57.222 39.130 1.35 1.82 44.16 3.69
84 85 4.506937 TGTGGTACAAAGTTGTTACCCT 57.493 40.909 1.35 0.00 44.16 4.34
85 86 5.627182 TGTGGTACAAAGTTGTTACCCTA 57.373 39.130 1.35 0.00 44.16 3.53
87 88 4.453478 GTGGTACAAAGTTGTTACCCTAGC 59.547 45.833 1.35 0.00 44.16 3.42
88 89 4.005650 GGTACAAAGTTGTTACCCTAGCC 58.994 47.826 1.35 0.00 42.35 3.93
89 90 3.150458 ACAAAGTTGTTACCCTAGCCC 57.850 47.619 0.00 0.00 38.47 5.19
90 91 2.224942 ACAAAGTTGTTACCCTAGCCCC 60.225 50.000 0.00 0.00 38.47 5.80
91 92 1.750022 AAGTTGTTACCCTAGCCCCA 58.250 50.000 0.00 0.00 0.00 4.96
92 93 1.750022 AGTTGTTACCCTAGCCCCAA 58.250 50.000 0.00 0.00 0.00 4.12
95 96 1.282382 TGTTACCCTAGCCCCAAGTC 58.718 55.000 0.00 0.00 0.00 3.01
97 98 1.209747 GTTACCCTAGCCCCAAGTCTG 59.790 57.143 0.00 0.00 0.00 3.51
98 99 0.326238 TACCCTAGCCCCAAGTCTGG 60.326 60.000 0.00 0.00 43.10 3.86
99 100 1.616628 CCCTAGCCCCAAGTCTGGT 60.617 63.158 0.00 0.00 41.72 4.00
100 101 1.604378 CCTAGCCCCAAGTCTGGTG 59.396 63.158 0.00 0.00 41.72 4.17
101 102 1.604378 CTAGCCCCAAGTCTGGTGG 59.396 63.158 0.00 0.00 41.72 4.61
102 103 1.151899 TAGCCCCAAGTCTGGTGGT 60.152 57.895 0.00 0.00 41.72 4.16
104 105 1.152546 GCCCCAAGTCTGGTGGTTT 60.153 57.895 0.00 0.00 41.72 3.27
105 106 0.759060 GCCCCAAGTCTGGTGGTTTT 60.759 55.000 0.00 0.00 41.72 2.43
107 108 1.039856 CCCAAGTCTGGTGGTTTTGG 58.960 55.000 0.00 0.00 41.72 3.28
108 109 1.039856 CCAAGTCTGGTGGTTTTGGG 58.960 55.000 0.00 0.00 38.00 4.12
109 110 1.687996 CCAAGTCTGGTGGTTTTGGGT 60.688 52.381 0.00 0.00 38.00 4.51
110 111 2.423660 CCAAGTCTGGTGGTTTTGGGTA 60.424 50.000 0.00 0.00 38.00 3.69
112 113 3.673543 AGTCTGGTGGTTTTGGGTAAA 57.326 42.857 0.00 0.00 0.00 2.01
114 115 5.327737 AGTCTGGTGGTTTTGGGTAAATA 57.672 39.130 0.00 0.00 0.00 1.40
115 116 5.707495 AGTCTGGTGGTTTTGGGTAAATAA 58.293 37.500 0.00 0.00 0.00 1.40
116 117 5.537295 AGTCTGGTGGTTTTGGGTAAATAAC 59.463 40.000 0.00 0.00 0.00 1.89
117 118 5.537295 GTCTGGTGGTTTTGGGTAAATAACT 59.463 40.000 0.00 0.00 0.00 2.24
118 119 5.771165 TCTGGTGGTTTTGGGTAAATAACTC 59.229 40.000 0.00 0.00 0.00 3.01
119 120 5.455872 TGGTGGTTTTGGGTAAATAACTCA 58.544 37.500 0.00 0.00 36.54 3.41
130 131 8.600449 TGGGTAAATAACTCAAAAATTGCTTG 57.400 30.769 0.00 0.00 34.89 4.01
131 132 7.172361 TGGGTAAATAACTCAAAAATTGCTTGC 59.828 33.333 0.00 0.00 34.89 4.01
133 134 9.418045 GGTAAATAACTCAAAAATTGCTTGCTA 57.582 29.630 0.00 0.00 0.00 3.49
137 138 9.492973 AATAACTCAAAAATTGCTTGCTATGTT 57.507 25.926 0.00 0.00 0.00 2.71
138 139 7.790823 AACTCAAAAATTGCTTGCTATGTTT 57.209 28.000 0.62 0.62 0.00 2.83
141 142 7.495279 ACTCAAAAATTGCTTGCTATGTTTCAA 59.505 29.630 3.01 0.00 0.00 2.69
142 143 7.853524 TCAAAAATTGCTTGCTATGTTTCAAG 58.146 30.769 3.01 0.00 41.79 3.02
144 145 8.500773 CAAAAATTGCTTGCTATGTTTCAAGAT 58.499 29.630 6.20 0.00 41.50 2.40
146 147 9.709495 AAAATTGCTTGCTATGTTTCAAGATAA 57.291 25.926 6.20 1.67 41.50 1.75
147 148 9.880157 AAATTGCTTGCTATGTTTCAAGATAAT 57.120 25.926 6.20 3.59 41.50 1.28
148 149 8.867112 ATTGCTTGCTATGTTTCAAGATAATG 57.133 30.769 6.20 0.00 41.50 1.90
149 150 7.628769 TGCTTGCTATGTTTCAAGATAATGA 57.371 32.000 6.20 0.00 41.50 2.57
150 151 8.054152 TGCTTGCTATGTTTCAAGATAATGAA 57.946 30.769 6.20 0.00 41.50 2.57
151 152 8.522003 TGCTTGCTATGTTTCAAGATAATGAAA 58.478 29.630 6.20 0.00 44.68 2.69
177 178 9.768662 AAATAATATGAGCATGTTTTTCCATCC 57.231 29.630 0.00 0.00 0.00 3.51
178 179 3.788333 ATGAGCATGTTTTTCCATCCG 57.212 42.857 0.00 0.00 0.00 4.18
181 182 3.571828 TGAGCATGTTTTTCCATCCGAAA 59.428 39.130 0.00 0.00 38.74 3.46
182 183 4.038522 TGAGCATGTTTTTCCATCCGAAAA 59.961 37.500 0.00 0.00 46.41 2.29
190 191 5.890424 TTTTCCATCCGAAAACTATCCAC 57.110 39.130 0.00 0.00 43.89 4.02
191 192 4.561500 TTCCATCCGAAAACTATCCACA 57.438 40.909 0.00 0.00 0.00 4.17
192 193 4.771114 TCCATCCGAAAACTATCCACAT 57.229 40.909 0.00 0.00 0.00 3.21
193 194 5.110814 TCCATCCGAAAACTATCCACATT 57.889 39.130 0.00 0.00 0.00 2.71
194 195 5.505780 TCCATCCGAAAACTATCCACATTT 58.494 37.500 0.00 0.00 0.00 2.32
195 196 5.949354 TCCATCCGAAAACTATCCACATTTT 59.051 36.000 0.00 0.00 0.00 1.82
196 197 6.094881 TCCATCCGAAAACTATCCACATTTTC 59.905 38.462 0.00 0.00 38.43 2.29
197 198 5.890424 TCCGAAAACTATCCACATTTTCC 57.110 39.130 0.00 0.00 38.53 3.13
198 199 5.566469 TCCGAAAACTATCCACATTTTCCT 58.434 37.500 0.00 0.00 38.53 3.36
200 201 6.150474 TCCGAAAACTATCCACATTTTCCTTC 59.850 38.462 0.00 0.00 38.53 3.46
201 202 6.151144 CCGAAAACTATCCACATTTTCCTTCT 59.849 38.462 0.00 0.00 38.53 2.85
203 204 8.726988 CGAAAACTATCCACATTTTCCTTCTTA 58.273 33.333 0.00 0.00 38.53 2.10
207 208 8.349568 ACTATCCACATTTTCCTTCTTAAACC 57.650 34.615 0.00 0.00 0.00 3.27
208 209 5.699097 TCCACATTTTCCTTCTTAAACCG 57.301 39.130 0.00 0.00 0.00 4.44
209 210 5.134661 TCCACATTTTCCTTCTTAAACCGT 58.865 37.500 0.00 0.00 0.00 4.83
210 211 5.009210 TCCACATTTTCCTTCTTAAACCGTG 59.991 40.000 0.00 0.00 0.00 4.94
211 212 5.219633 CACATTTTCCTTCTTAAACCGTGG 58.780 41.667 0.00 0.00 0.00 4.94
212 213 3.994204 TTTTCCTTCTTAAACCGTGGC 57.006 42.857 0.00 0.00 0.00 5.01
213 214 2.642154 TTCCTTCTTAAACCGTGGCA 57.358 45.000 0.00 0.00 0.00 4.92
214 215 2.642154 TCCTTCTTAAACCGTGGCAA 57.358 45.000 0.00 0.00 0.00 4.52
215 216 2.933573 TCCTTCTTAAACCGTGGCAAA 58.066 42.857 0.00 0.00 0.00 3.68
217 218 2.621526 CCTTCTTAAACCGTGGCAAAGT 59.378 45.455 0.00 0.00 0.00 2.66
220 221 3.280295 TCTTAAACCGTGGCAAAGTCAA 58.720 40.909 0.00 0.00 0.00 3.18
221 222 3.886505 TCTTAAACCGTGGCAAAGTCAAT 59.113 39.130 0.00 0.00 0.00 2.57
222 223 2.507339 AAACCGTGGCAAAGTCAATG 57.493 45.000 0.00 0.00 0.00 2.82
223 224 1.686355 AACCGTGGCAAAGTCAATGA 58.314 45.000 0.00 0.00 0.00 2.57
224 225 1.686355 ACCGTGGCAAAGTCAATGAA 58.314 45.000 0.00 0.00 0.00 2.57
225 226 2.028130 ACCGTGGCAAAGTCAATGAAA 58.972 42.857 0.00 0.00 0.00 2.69
231 232 4.268405 GTGGCAAAGTCAATGAAAACACTG 59.732 41.667 0.00 0.00 0.00 3.66
232 233 4.159321 TGGCAAAGTCAATGAAAACACTGA 59.841 37.500 0.00 0.00 0.00 3.41
293 294 4.273148 ACATGACACCTGAAAGTCTACC 57.727 45.455 0.00 0.00 35.81 3.18
296 297 2.632996 TGACACCTGAAAGTCTACCCTG 59.367 50.000 0.00 0.00 35.81 4.45
305 306 5.399991 TGAAAGTCTACCCTGGAACTTCTA 58.600 41.667 0.00 0.00 0.00 2.10
306 307 6.023603 TGAAAGTCTACCCTGGAACTTCTAT 58.976 40.000 0.00 0.00 0.00 1.98
308 309 3.707102 AGTCTACCCTGGAACTTCTATGC 59.293 47.826 0.00 0.00 0.00 3.14
312 313 1.839994 CCCTGGAACTTCTATGCTCCA 59.160 52.381 0.00 0.00 36.53 3.86
341 342 1.257750 GGCTTGGGGGTTCCATGTTC 61.258 60.000 0.00 0.00 46.52 3.18
349 350 3.317993 GGGGGTTCCATGTTCGATTAATG 59.682 47.826 0.00 0.00 35.00 1.90
412 1825 1.902556 GCCTAACCTCCGGCAGTTA 59.097 57.895 13.46 13.46 45.59 2.24
420 1833 2.039879 ACCTCCGGCAGTTAAGTTCATT 59.960 45.455 0.00 0.00 0.00 2.57
425 1838 3.181510 CCGGCAGTTAAGTTCATTAGTGC 60.182 47.826 0.00 0.00 35.72 4.40
446 1860 1.342496 TCTCATCGCCTGGATCATCAC 59.658 52.381 0.00 0.00 31.28 3.06
468 1882 1.677633 TCGAGATGAGGTGGCGACA 60.678 57.895 0.00 0.00 38.70 4.35
492 1906 2.887568 GGCAGTGACCTCATCGCG 60.888 66.667 0.00 0.00 43.10 5.87
582 1998 8.858003 TCGCACAGAAAATTACAATTAAAACA 57.142 26.923 0.00 0.00 0.00 2.83
590 2006 9.673454 GAAAATTACAATTAAAACAGACCTCGT 57.327 29.630 0.00 0.00 0.00 4.18
682 2112 6.145338 ACTATACATACAGAACAAGACCCG 57.855 41.667 0.00 0.00 0.00 5.28
960 2456 2.254152 TCTGTAGGGTGCCTTGAGAT 57.746 50.000 0.00 0.00 34.61 2.75
961 2457 2.111384 TCTGTAGGGTGCCTTGAGATC 58.889 52.381 0.00 0.00 34.61 2.75
962 2458 1.139853 CTGTAGGGTGCCTTGAGATCC 59.860 57.143 0.00 0.00 34.61 3.36
963 2459 1.204146 GTAGGGTGCCTTGAGATCCA 58.796 55.000 0.00 0.00 34.61 3.41
964 2460 1.139853 GTAGGGTGCCTTGAGATCCAG 59.860 57.143 0.00 0.00 34.61 3.86
966 2462 1.300963 GGTGCCTTGAGATCCAGCA 59.699 57.895 0.00 0.00 0.00 4.41
967 2463 0.106819 GGTGCCTTGAGATCCAGCAT 60.107 55.000 0.00 0.00 35.62 3.79
1026 2522 2.496899 TTGCTTCCCCAGTTGATCTC 57.503 50.000 0.00 0.00 0.00 2.75
1042 2538 1.783284 TCTCAGCATCGTGTCACAAC 58.217 50.000 3.42 0.00 0.00 3.32
1143 2660 2.435059 GGAGAGGGCGAGCAACAC 60.435 66.667 0.00 0.00 0.00 3.32
1146 2663 2.045926 GAGGGCGAGCAACACCAT 60.046 61.111 0.00 0.00 0.00 3.55
1147 2664 2.360350 AGGGCGAGCAACACCATG 60.360 61.111 0.00 0.00 0.00 3.66
1149 2666 2.359850 GGCGAGCAACACCATGGA 60.360 61.111 21.47 0.00 0.00 3.41
1150 2667 2.690778 GGCGAGCAACACCATGGAC 61.691 63.158 21.47 1.94 0.00 4.02
1162 3936 1.499056 CATGGACACGAAGCAGCAC 59.501 57.895 0.00 0.00 0.00 4.40
1367 4150 1.542187 CGTCTCCCCGGGAAAAGAGT 61.542 60.000 26.32 0.00 0.00 3.24
1373 4156 2.033194 CCGGGAAAAGAGTCACGCC 61.033 63.158 0.00 0.00 43.23 5.68
1439 4222 2.524640 TGGGTGGTGGTGCTACGA 60.525 61.111 0.00 0.00 0.00 3.43
1666 4464 1.865970 CGGACTAGTAGCTACGGAGTG 59.134 57.143 28.56 16.88 45.73 3.51
1722 4520 2.223377 GCCCGTGAACAGTAGTTTCAAG 59.777 50.000 0.00 0.00 38.30 3.02
1754 4561 3.454375 TCTTTCGACGGGCATTTAGATC 58.546 45.455 0.00 0.00 0.00 2.75
1761 4568 3.214328 ACGGGCATTTAGATCATGGTTC 58.786 45.455 0.00 0.00 0.00 3.62
1765 4572 5.649395 CGGGCATTTAGATCATGGTTCATAT 59.351 40.000 0.00 0.00 0.00 1.78
1766 4573 6.151648 CGGGCATTTAGATCATGGTTCATATT 59.848 38.462 0.00 0.00 0.00 1.28
1767 4574 7.542025 GGGCATTTAGATCATGGTTCATATTC 58.458 38.462 0.00 0.00 0.00 1.75
1768 4575 7.363268 GGGCATTTAGATCATGGTTCATATTCC 60.363 40.741 0.00 0.00 0.00 3.01
1769 4576 7.177216 GGCATTTAGATCATGGTTCATATTCCA 59.823 37.037 0.00 0.00 38.14 3.53
1770 4577 8.746530 GCATTTAGATCATGGTTCATATTCCAT 58.253 33.333 0.00 0.00 44.15 3.41
1776 4583 8.663167 AGATCATGGTTCATATTCCATACTTCA 58.337 33.333 0.00 0.00 41.79 3.02
1777 4584 9.458727 GATCATGGTTCATATTCCATACTTCAT 57.541 33.333 0.00 0.00 41.79 2.57
1826 4633 9.674068 CAGCTCTAGTATCACCAGTTATCTATA 57.326 37.037 0.00 0.00 0.00 1.31
1828 4635 9.675464 GCTCTAGTATCACCAGTTATCTATAGT 57.325 37.037 0.00 0.00 0.00 2.12
1886 6998 2.719325 CGTGATTGCTACGTTCATGG 57.281 50.000 0.00 0.00 36.83 3.66
1887 6999 2.267426 CGTGATTGCTACGTTCATGGA 58.733 47.619 0.00 0.00 36.83 3.41
1888 7000 2.866156 CGTGATTGCTACGTTCATGGAT 59.134 45.455 0.00 0.00 36.83 3.41
1889 7001 3.060272 CGTGATTGCTACGTTCATGGATC 60.060 47.826 0.00 0.00 36.83 3.36
1890 7002 4.122776 GTGATTGCTACGTTCATGGATCT 58.877 43.478 0.00 0.00 0.00 2.75
1891 7003 4.572389 GTGATTGCTACGTTCATGGATCTT 59.428 41.667 0.00 0.00 0.00 2.40
1892 7004 5.753438 GTGATTGCTACGTTCATGGATCTTA 59.247 40.000 0.00 0.00 0.00 2.10
1893 7005 6.425114 GTGATTGCTACGTTCATGGATCTTAT 59.575 38.462 0.00 0.00 0.00 1.73
1894 7006 7.598869 GTGATTGCTACGTTCATGGATCTTATA 59.401 37.037 0.00 0.00 0.00 0.98
1895 7007 8.314021 TGATTGCTACGTTCATGGATCTTATAT 58.686 33.333 0.00 0.00 0.00 0.86
1896 7008 7.889589 TTGCTACGTTCATGGATCTTATATG 57.110 36.000 0.00 0.00 0.00 1.78
1897 7009 6.398095 TGCTACGTTCATGGATCTTATATGG 58.602 40.000 0.00 0.00 0.00 2.74
1898 7010 6.210584 TGCTACGTTCATGGATCTTATATGGA 59.789 38.462 0.00 0.00 0.00 3.41
1899 7011 6.754209 GCTACGTTCATGGATCTTATATGGAG 59.246 42.308 0.00 0.00 0.00 3.86
1900 7012 6.918067 ACGTTCATGGATCTTATATGGAGA 57.082 37.500 0.00 0.00 0.00 3.71
1901 7013 7.487822 ACGTTCATGGATCTTATATGGAGAT 57.512 36.000 0.00 3.79 36.60 2.75
1902 7014 7.551585 ACGTTCATGGATCTTATATGGAGATC 58.448 38.462 16.69 16.69 45.61 2.75
1908 7020 5.330455 GATCTTATATGGAGATCCGTGCA 57.670 43.478 15.11 0.00 42.28 4.57
1909 7021 5.724328 GATCTTATATGGAGATCCGTGCAA 58.276 41.667 15.11 0.00 42.28 4.08
1910 7022 5.545063 TCTTATATGGAGATCCGTGCAAA 57.455 39.130 3.75 0.00 39.43 3.68
1911 7023 5.924356 TCTTATATGGAGATCCGTGCAAAA 58.076 37.500 3.75 0.00 39.43 2.44
1912 7024 6.533730 TCTTATATGGAGATCCGTGCAAAAT 58.466 36.000 3.75 0.00 39.43 1.82
1913 7025 6.998074 TCTTATATGGAGATCCGTGCAAAATT 59.002 34.615 3.75 0.00 39.43 1.82
1914 7026 7.502226 TCTTATATGGAGATCCGTGCAAAATTT 59.498 33.333 3.75 0.00 39.43 1.82
1915 7027 4.806640 ATGGAGATCCGTGCAAAATTTT 57.193 36.364 0.00 0.00 39.43 1.82
1916 7028 4.173036 TGGAGATCCGTGCAAAATTTTC 57.827 40.909 0.00 0.00 39.43 2.29
1917 7029 3.826157 TGGAGATCCGTGCAAAATTTTCT 59.174 39.130 0.00 0.00 39.43 2.52
1918 7030 4.280677 TGGAGATCCGTGCAAAATTTTCTT 59.719 37.500 0.00 0.00 39.43 2.52
1919 7031 5.221422 TGGAGATCCGTGCAAAATTTTCTTT 60.221 36.000 0.00 0.00 39.43 2.52
1920 7032 5.696270 GGAGATCCGTGCAAAATTTTCTTTT 59.304 36.000 0.00 0.00 0.00 2.27
1921 7033 6.202762 GGAGATCCGTGCAAAATTTTCTTTTT 59.797 34.615 0.00 0.00 0.00 1.94
1922 7034 7.383843 GGAGATCCGTGCAAAATTTTCTTTTTA 59.616 33.333 0.00 0.00 0.00 1.52
1923 7035 8.655651 AGATCCGTGCAAAATTTTCTTTTTAA 57.344 26.923 0.00 0.00 0.00 1.52
1924 7036 9.271828 AGATCCGTGCAAAATTTTCTTTTTAAT 57.728 25.926 0.00 0.00 0.00 1.40
1925 7037 9.877137 GATCCGTGCAAAATTTTCTTTTTAATT 57.123 25.926 0.00 0.00 0.00 1.40
1968 7080 9.561069 AAATGTTATGTCACTTGACTTAGACTT 57.439 29.630 10.63 5.90 44.99 3.01
1969 7081 9.561069 AATGTTATGTCACTTGACTTAGACTTT 57.439 29.630 10.63 9.94 44.99 2.66
1970 7082 8.365399 TGTTATGTCACTTGACTTAGACTTTG 57.635 34.615 10.63 0.00 44.99 2.77
1971 7083 7.985184 TGTTATGTCACTTGACTTAGACTTTGT 59.015 33.333 10.63 0.00 44.99 2.83
1972 7084 8.827677 GTTATGTCACTTGACTTAGACTTTGTT 58.172 33.333 10.63 0.00 44.99 2.83
1973 7085 7.865706 ATGTCACTTGACTTAGACTTTGTTT 57.134 32.000 10.63 0.00 44.99 2.83
1974 7086 8.958119 ATGTCACTTGACTTAGACTTTGTTTA 57.042 30.769 10.63 0.00 44.99 2.01
1975 7087 8.420374 TGTCACTTGACTTAGACTTTGTTTAG 57.580 34.615 10.63 0.00 44.99 1.85
1976 7088 8.038944 TGTCACTTGACTTAGACTTTGTTTAGT 58.961 33.333 10.63 0.00 44.99 2.24
1977 7089 8.541312 GTCACTTGACTTAGACTTTGTTTAGTC 58.459 37.037 1.92 0.00 41.72 2.59
1987 7099 5.517322 ACTTTGTTTAGTCTCAGTCGAGT 57.483 39.130 0.00 0.00 40.44 4.18
1988 7100 5.282510 ACTTTGTTTAGTCTCAGTCGAGTG 58.717 41.667 14.33 14.33 40.44 3.51
1989 7101 5.067413 ACTTTGTTTAGTCTCAGTCGAGTGA 59.933 40.000 21.32 21.32 40.44 3.41
1990 7102 4.750952 TGTTTAGTCTCAGTCGAGTGAG 57.249 45.455 34.80 34.80 44.71 3.51
1996 7108 3.254470 TCTCAGTCGAGTGAGACCTAG 57.746 52.381 37.53 20.04 46.52 3.02
1997 7109 1.668751 CTCAGTCGAGTGAGACCTAGC 59.331 57.143 36.52 0.00 46.02 3.42
1998 7110 0.736053 CAGTCGAGTGAGACCTAGCC 59.264 60.000 15.40 0.00 41.83 3.93
1999 7111 0.328592 AGTCGAGTGAGACCTAGCCA 59.671 55.000 0.00 0.00 41.83 4.75
2000 7112 0.452585 GTCGAGTGAGACCTAGCCAC 59.547 60.000 0.00 0.00 35.22 5.01
2001 7113 0.037734 TCGAGTGAGACCTAGCCACA 59.962 55.000 0.00 0.00 33.53 4.17
2002 7114 0.171455 CGAGTGAGACCTAGCCACAC 59.829 60.000 0.00 0.00 33.53 3.82
2003 7115 0.533032 GAGTGAGACCTAGCCACACC 59.467 60.000 0.00 0.00 33.53 4.16
2004 7116 0.905337 AGTGAGACCTAGCCACACCC 60.905 60.000 0.00 0.00 33.53 4.61
2005 7117 0.905337 GTGAGACCTAGCCACACCCT 60.905 60.000 0.00 0.00 0.00 4.34
2006 7118 0.708209 TGAGACCTAGCCACACCCTA 59.292 55.000 0.00 0.00 0.00 3.53
2007 7119 1.078159 TGAGACCTAGCCACACCCTAA 59.922 52.381 0.00 0.00 0.00 2.69
2008 7120 2.185387 GAGACCTAGCCACACCCTAAA 58.815 52.381 0.00 0.00 0.00 1.85
2009 7121 2.570302 GAGACCTAGCCACACCCTAAAA 59.430 50.000 0.00 0.00 0.00 1.52
2010 7122 2.983898 AGACCTAGCCACACCCTAAAAA 59.016 45.455 0.00 0.00 0.00 1.94
2011 7123 3.009143 AGACCTAGCCACACCCTAAAAAG 59.991 47.826 0.00 0.00 0.00 2.27
2012 7124 2.983898 ACCTAGCCACACCCTAAAAAGA 59.016 45.455 0.00 0.00 0.00 2.52
2013 7125 3.396611 ACCTAGCCACACCCTAAAAAGAA 59.603 43.478 0.00 0.00 0.00 2.52
2014 7126 4.044191 ACCTAGCCACACCCTAAAAAGAAT 59.956 41.667 0.00 0.00 0.00 2.40
2015 7127 5.252164 ACCTAGCCACACCCTAAAAAGAATA 59.748 40.000 0.00 0.00 0.00 1.75
2016 7128 5.823045 CCTAGCCACACCCTAAAAAGAATAG 59.177 44.000 0.00 0.00 0.00 1.73
2017 7129 5.514500 AGCCACACCCTAAAAAGAATAGA 57.486 39.130 0.00 0.00 0.00 1.98
2071 7183 1.678360 CAGCGAAGATGTTTGTGTGC 58.322 50.000 0.00 0.00 40.13 4.57
2073 7185 1.881973 AGCGAAGATGTTTGTGTGCAT 59.118 42.857 0.00 0.00 0.00 3.96
2080 7192 4.077108 AGATGTTTGTGTGCATGATGTCT 58.923 39.130 0.00 0.00 0.00 3.41
2081 7193 5.247862 AGATGTTTGTGTGCATGATGTCTA 58.752 37.500 0.00 0.00 0.00 2.59
2103 7215 7.913297 GTCTATGCCAATTTTTAGCGTGATTAA 59.087 33.333 0.00 0.00 0.00 1.40
2105 7217 6.698359 TGCCAATTTTTAGCGTGATTAAAC 57.302 33.333 0.00 0.00 0.00 2.01
2109 7221 7.275560 GCCAATTTTTAGCGTGATTAAACATCT 59.724 33.333 0.00 0.00 0.00 2.90
2110 7222 9.781834 CCAATTTTTAGCGTGATTAAACATCTA 57.218 29.630 0.00 0.00 0.00 1.98
2139 7252 7.903995 ACTTTCAGCAAAAAGACAAATTTGA 57.096 28.000 24.64 0.00 38.30 2.69
2140 7253 7.967178 ACTTTCAGCAAAAAGACAAATTTGAG 58.033 30.769 24.64 8.44 38.30 3.02
2141 7254 6.907206 TTCAGCAAAAAGACAAATTTGAGG 57.093 33.333 24.64 0.00 38.50 3.86
2142 7255 5.976458 TCAGCAAAAAGACAAATTTGAGGT 58.024 33.333 24.64 2.04 38.50 3.85
2144 7257 6.878389 TCAGCAAAAAGACAAATTTGAGGTTT 59.122 30.769 24.64 15.78 38.50 3.27
2145 7258 6.962678 CAGCAAAAAGACAAATTTGAGGTTTG 59.037 34.615 24.64 23.19 38.50 2.93
2146 7259 6.093909 AGCAAAAAGACAAATTTGAGGTTTGG 59.906 34.615 24.64 16.67 40.08 3.28
2147 7260 6.128035 GCAAAAAGACAAATTTGAGGTTTGGT 60.128 34.615 24.64 9.27 40.08 3.67
2152 7266 8.716646 AAGACAAATTTGAGGTTTGGTAAAAG 57.283 30.769 24.64 0.00 40.08 2.27
2153 7267 7.847096 AGACAAATTTGAGGTTTGGTAAAAGT 58.153 30.769 24.64 0.00 40.08 2.66
2160 7274 8.950208 TTTGAGGTTTGGTAAAAGTTTATTGG 57.050 30.769 0.00 0.00 0.00 3.16
2173 7287 8.956533 AAAAGTTTATTGGTTATGCACTGTTT 57.043 26.923 0.00 0.00 0.00 2.83
2176 7290 6.266558 AGTTTATTGGTTATGCACTGTTTGGA 59.733 34.615 0.00 0.00 0.00 3.53
2177 7291 4.519540 ATTGGTTATGCACTGTTTGGAC 57.480 40.909 0.00 0.00 0.00 4.02
2178 7292 2.235016 TGGTTATGCACTGTTTGGACC 58.765 47.619 0.00 0.00 0.00 4.46
2179 7293 1.199097 GGTTATGCACTGTTTGGACCG 59.801 52.381 0.00 0.00 0.00 4.79
2181 7295 0.398696 TATGCACTGTTTGGACCGGT 59.601 50.000 6.92 6.92 0.00 5.28
2184 7298 1.310904 GCACTGTTTGGACCGGTTTA 58.689 50.000 9.42 0.00 0.00 2.01
2185 7299 1.265905 GCACTGTTTGGACCGGTTTAG 59.734 52.381 9.42 3.88 0.00 1.85
2189 7303 4.018490 ACTGTTTGGACCGGTTTAGTTTT 58.982 39.130 9.42 0.00 0.00 2.43
2222 7336 5.450137 GCTACTAAGATCTCCAAACACGCTA 60.450 44.000 0.00 0.00 0.00 4.26
2223 7337 5.000012 ACTAAGATCTCCAAACACGCTAG 58.000 43.478 0.00 0.00 0.00 3.42
2229 7343 5.352569 AGATCTCCAAACACGCTAGAAATTG 59.647 40.000 0.00 0.00 0.00 2.32
2237 7351 1.299541 CGCTAGAAATTGGCACGGAT 58.700 50.000 0.00 0.00 31.77 4.18
2255 7369 3.622612 CGGATCACATGCACTCAAACATA 59.377 43.478 0.00 0.00 0.00 2.29
2258 7372 6.204359 GGATCACATGCACTCAAACATATTC 58.796 40.000 0.00 0.00 0.00 1.75
2260 7374 4.398988 TCACATGCACTCAAACATATTCCC 59.601 41.667 0.00 0.00 0.00 3.97
2261 7375 4.158209 CACATGCACTCAAACATATTCCCA 59.842 41.667 0.00 0.00 0.00 4.37
2263 7377 2.754552 TGCACTCAAACATATTCCCAGC 59.245 45.455 0.00 0.00 0.00 4.85
2351 7467 0.723981 GCTCGAGTGCAGAATTGGAC 59.276 55.000 15.13 0.00 45.09 4.02
2364 7480 4.398988 CAGAATTGGACATTCGGGAATCAA 59.601 41.667 0.00 0.00 33.51 2.57
2366 7482 5.300286 AGAATTGGACATTCGGGAATCAATC 59.700 40.000 7.06 0.31 33.51 2.67
2370 7486 4.080356 TGGACATTCGGGAATCAATCTCTT 60.080 41.667 0.00 0.00 0.00 2.85
2398 7517 7.786178 TTAATAACAGGAATCAATCTCGGTG 57.214 36.000 0.00 0.00 0.00 4.94
2402 7521 3.517901 ACAGGAATCAATCTCGGTGGTTA 59.482 43.478 0.00 0.00 0.00 2.85
2414 7533 4.992319 TCTCGGTGGTTACAAACATTACTG 59.008 41.667 0.00 0.00 0.00 2.74
2415 7534 4.958509 TCGGTGGTTACAAACATTACTGA 58.041 39.130 0.00 0.00 0.00 3.41
2419 7538 5.529800 GGTGGTTACAAACATTACTGACAGT 59.470 40.000 13.68 13.68 0.00 3.55
2444 7709 5.299028 TCCGTGTAAACTATAGGCGACAATA 59.701 40.000 4.43 0.00 0.00 1.90
2449 7714 9.467258 GTGTAAACTATAGGCGACAATATTGTA 57.533 33.333 20.83 5.78 42.43 2.41
2489 7754 5.030147 TGGGATCACAGGTTGTCTAATACT 58.970 41.667 0.00 0.00 0.00 2.12
2491 7756 6.097839 TGGGATCACAGGTTGTCTAATACTAC 59.902 42.308 0.00 0.00 33.63 2.73
2496 7761 9.787435 ATCACAGGTTGTCTAATACTACAAAAA 57.213 29.630 0.00 0.00 37.35 1.94
2587 7860 8.665643 TTAGAAGAACAAAAGTTACAATCGGA 57.334 30.769 0.00 0.00 0.00 4.55
2613 7886 5.239744 CAGTAGATCACCTAGCGACAACTAT 59.760 44.000 0.00 0.00 0.00 2.12
2621 7894 3.795101 CCTAGCGACAACTATAAACACCG 59.205 47.826 0.00 0.00 0.00 4.94
2625 7898 3.841643 CGACAACTATAAACACCGGAGT 58.158 45.455 9.46 2.22 0.00 3.85
2638 7911 0.951040 CCGGAGTGAGTCAAAGGCAC 60.951 60.000 0.00 0.00 0.00 5.01
2639 7912 0.249868 CGGAGTGAGTCAAAGGCACA 60.250 55.000 0.00 0.00 35.08 4.57
2640 7913 1.609061 CGGAGTGAGTCAAAGGCACAT 60.609 52.381 0.00 0.00 35.08 3.21
2645 7918 0.716108 GAGTCAAAGGCACATCGTCG 59.284 55.000 0.00 0.00 0.00 5.12
2651 7924 0.246360 AAGGCACATCGTCGTCATCA 59.754 50.000 0.00 0.00 0.00 3.07
2652 7925 0.461548 AGGCACATCGTCGTCATCAT 59.538 50.000 0.00 0.00 0.00 2.45
2659 7932 1.763968 TCGTCGTCATCATCCCTCTT 58.236 50.000 0.00 0.00 0.00 2.85
2662 7935 2.159240 CGTCGTCATCATCCCTCTTTCA 60.159 50.000 0.00 0.00 0.00 2.69
2665 7938 2.555199 GTCATCATCCCTCTTTCACCG 58.445 52.381 0.00 0.00 0.00 4.94
2669 7942 0.905357 CATCCCTCTTTCACCGGAGT 59.095 55.000 9.46 0.00 0.00 3.85
2671 7944 1.215647 CCCTCTTTCACCGGAGTCG 59.784 63.158 9.46 0.00 0.00 4.18
2692 7965 7.803724 AGTCGGAAAATGTTGTTGTAATAGAC 58.196 34.615 0.00 0.00 0.00 2.59
2696 7969 7.744715 CGGAAAATGTTGTTGTAATAGACAGTC 59.255 37.037 0.00 0.00 39.88 3.51
2744 8017 1.816224 GGACCAACGCACCATAACAAT 59.184 47.619 0.00 0.00 0.00 2.71
2751 8024 4.893424 ACGCACCATAACAATAATCACC 57.107 40.909 0.00 0.00 0.00 4.02
2763 8036 2.509052 TAATCACCGCCGATGAAGAG 57.491 50.000 0.00 0.00 0.00 2.85
2766 8039 0.173481 TCACCGCCGATGAAGAGAAG 59.827 55.000 0.00 0.00 0.00 2.85
2775 8048 4.112634 CCGATGAAGAGAAGCGTAAATCA 58.887 43.478 0.00 0.00 0.00 2.57
2788 8061 7.595130 AGAAGCGTAAATCAAAAGAATCAAACC 59.405 33.333 0.00 0.00 0.00 3.27
2789 8062 6.744112 AGCGTAAATCAAAAGAATCAAACCA 58.256 32.000 0.00 0.00 0.00 3.67
2858 8131 2.546368 CGAAAGAACAACACCCATCGAA 59.454 45.455 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.733041 TAACGCAGAGCACTGACGC 60.733 57.895 15.88 0.00 46.03 5.19
1 2 1.665544 CGTAACGCAGAGCACTGACG 61.666 60.000 15.88 18.34 46.03 4.35
3 4 0.876399 TACGTAACGCAGAGCACTGA 59.124 50.000 15.88 0.00 46.03 3.41
4 5 1.909376 ATACGTAACGCAGAGCACTG 58.091 50.000 6.80 6.80 45.91 3.66
5 6 2.649331 AATACGTAACGCAGAGCACT 57.351 45.000 0.00 0.00 0.00 4.40
6 7 2.787680 CCTAATACGTAACGCAGAGCAC 59.212 50.000 0.00 0.00 0.00 4.40
8 9 1.785430 GCCTAATACGTAACGCAGAGC 59.215 52.381 0.00 0.00 0.00 4.09
9 10 2.041966 CGCCTAATACGTAACGCAGAG 58.958 52.381 0.00 0.00 0.00 3.35
10 11 1.861202 GCGCCTAATACGTAACGCAGA 60.861 52.381 18.75 0.00 45.25 4.26
11 12 0.501435 GCGCCTAATACGTAACGCAG 59.499 55.000 18.75 7.08 45.25 5.18
12 13 2.580661 GCGCCTAATACGTAACGCA 58.419 52.632 18.75 0.00 45.25 5.24
13 14 0.922717 TTGCGCCTAATACGTAACGC 59.077 50.000 4.18 17.57 46.05 4.84
14 15 2.187707 ACTTGCGCCTAATACGTAACG 58.812 47.619 4.18 0.19 31.83 3.18
15 16 3.301388 CGAACTTGCGCCTAATACGTAAC 60.301 47.826 4.18 0.00 31.83 2.50
16 17 2.853594 CGAACTTGCGCCTAATACGTAA 59.146 45.455 4.18 0.00 34.05 3.18
17 18 2.453080 CGAACTTGCGCCTAATACGTA 58.547 47.619 4.18 0.00 0.00 3.57
19 20 0.575390 CCGAACTTGCGCCTAATACG 59.425 55.000 4.18 3.91 0.00 3.06
20 21 1.326548 CACCGAACTTGCGCCTAATAC 59.673 52.381 4.18 0.00 0.00 1.89
22 23 1.024579 CCACCGAACTTGCGCCTAAT 61.025 55.000 4.18 0.00 0.00 1.73
24 25 2.047655 CCACCGAACTTGCGCCTA 60.048 61.111 4.18 0.00 0.00 3.93
25 26 3.767630 AACCACCGAACTTGCGCCT 62.768 57.895 4.18 0.00 0.00 5.52
26 27 2.344521 AAAACCACCGAACTTGCGCC 62.345 55.000 4.18 0.00 0.00 6.53
27 28 0.526739 AAAAACCACCGAACTTGCGC 60.527 50.000 0.00 0.00 0.00 6.09
28 29 3.633573 AAAAACCACCGAACTTGCG 57.366 47.368 0.00 0.00 0.00 4.85
44 45 4.382470 CCACATTTGAACCAGGACACAAAA 60.382 41.667 0.00 0.00 36.19 2.44
45 46 3.131933 CCACATTTGAACCAGGACACAAA 59.868 43.478 0.00 3.28 36.82 2.83
46 47 2.692557 CCACATTTGAACCAGGACACAA 59.307 45.455 0.00 0.00 0.00 3.33
48 49 2.306847 ACCACATTTGAACCAGGACAC 58.693 47.619 0.00 0.00 0.00 3.67
50 51 3.482436 TGTACCACATTTGAACCAGGAC 58.518 45.455 0.00 0.00 0.00 3.85
51 52 3.866703 TGTACCACATTTGAACCAGGA 57.133 42.857 0.00 0.00 0.00 3.86
52 53 4.340950 ACTTTGTACCACATTTGAACCAGG 59.659 41.667 0.00 0.00 0.00 4.45
53 54 5.514274 ACTTTGTACCACATTTGAACCAG 57.486 39.130 0.00 0.00 0.00 4.00
54 55 5.186021 ACAACTTTGTACCACATTTGAACCA 59.814 36.000 0.00 0.00 40.16 3.67
55 56 5.656480 ACAACTTTGTACCACATTTGAACC 58.344 37.500 0.00 0.00 40.16 3.62
56 57 7.221259 GGTAACAACTTTGTACCACATTTGAAC 59.779 37.037 12.27 0.00 41.31 3.18
58 59 6.183360 GGGTAACAACTTTGTACCACATTTGA 60.183 38.462 16.14 0.00 41.31 2.69
63 64 4.506937 AGGGTAACAACTTTGTACCACA 57.493 40.909 16.14 0.00 41.31 4.17
64 65 4.453478 GCTAGGGTAACAACTTTGTACCAC 59.547 45.833 16.14 7.50 41.31 4.16
66 67 4.005650 GGCTAGGGTAACAACTTTGTACC 58.994 47.826 0.00 4.13 41.31 3.34
67 68 4.005650 GGGCTAGGGTAACAACTTTGTAC 58.994 47.826 0.00 0.00 41.31 2.90
68 69 3.009363 GGGGCTAGGGTAACAACTTTGTA 59.991 47.826 0.00 0.00 41.31 2.41
69 70 2.224942 GGGGCTAGGGTAACAACTTTGT 60.225 50.000 0.00 0.00 44.72 2.83
70 71 2.224917 TGGGGCTAGGGTAACAACTTTG 60.225 50.000 0.00 0.00 39.74 2.77
72 73 1.750022 TGGGGCTAGGGTAACAACTT 58.250 50.000 0.00 0.00 39.74 2.66
73 74 1.633945 CTTGGGGCTAGGGTAACAACT 59.366 52.381 0.00 0.00 39.74 3.16
77 78 1.209747 CAGACTTGGGGCTAGGGTAAC 59.790 57.143 0.00 0.00 0.00 2.50
78 79 1.580059 CAGACTTGGGGCTAGGGTAA 58.420 55.000 0.00 0.00 0.00 2.85
90 91 1.775385 ACCCAAAACCACCAGACTTG 58.225 50.000 0.00 0.00 0.00 3.16
91 92 3.673543 TTACCCAAAACCACCAGACTT 57.326 42.857 0.00 0.00 0.00 3.01
92 93 3.673543 TTTACCCAAAACCACCAGACT 57.326 42.857 0.00 0.00 0.00 3.24
95 96 5.536916 TGAGTTATTTACCCAAAACCACCAG 59.463 40.000 0.00 0.00 0.00 4.00
97 98 6.408107 TTGAGTTATTTACCCAAAACCACC 57.592 37.500 0.00 0.00 0.00 4.61
98 99 8.719560 TTTTTGAGTTATTTACCCAAAACCAC 57.280 30.769 0.00 0.00 42.05 4.16
99 100 9.907229 AATTTTTGAGTTATTTACCCAAAACCA 57.093 25.926 0.00 0.00 42.05 3.67
101 102 9.658475 GCAATTTTTGAGTTATTTACCCAAAAC 57.342 29.630 0.00 0.00 42.05 2.43
102 103 9.620259 AGCAATTTTTGAGTTATTTACCCAAAA 57.380 25.926 0.00 0.00 41.07 2.44
104 105 9.050601 CAAGCAATTTTTGAGTTATTTACCCAA 57.949 29.630 0.00 0.00 0.00 4.12
105 106 7.172361 GCAAGCAATTTTTGAGTTATTTACCCA 59.828 33.333 4.11 0.00 0.00 4.51
107 108 8.310406 AGCAAGCAATTTTTGAGTTATTTACC 57.690 30.769 4.11 0.00 0.00 2.85
110 111 9.492973 ACATAGCAAGCAATTTTTGAGTTATTT 57.507 25.926 4.11 0.00 0.00 1.40
112 113 9.492973 AAACATAGCAAGCAATTTTTGAGTTAT 57.507 25.926 4.11 0.00 0.00 1.89
114 115 7.495279 TGAAACATAGCAAGCAATTTTTGAGTT 59.505 29.630 4.11 0.00 0.00 3.01
115 116 6.985645 TGAAACATAGCAAGCAATTTTTGAGT 59.014 30.769 4.11 0.00 0.00 3.41
116 117 7.410800 TGAAACATAGCAAGCAATTTTTGAG 57.589 32.000 4.11 0.00 0.00 3.02
117 118 7.710044 TCTTGAAACATAGCAAGCAATTTTTGA 59.290 29.630 0.00 0.00 40.89 2.69
118 119 7.853524 TCTTGAAACATAGCAAGCAATTTTTG 58.146 30.769 0.00 0.00 40.89 2.44
119 120 8.611654 ATCTTGAAACATAGCAAGCAATTTTT 57.388 26.923 0.00 0.00 40.89 1.94
120 121 9.709495 TTATCTTGAAACATAGCAAGCAATTTT 57.291 25.926 0.00 0.00 40.89 1.82
121 122 9.880157 ATTATCTTGAAACATAGCAAGCAATTT 57.120 25.926 0.00 0.00 40.89 1.82
122 123 9.309516 CATTATCTTGAAACATAGCAAGCAATT 57.690 29.630 0.00 0.00 40.89 2.32
123 124 8.689061 TCATTATCTTGAAACATAGCAAGCAAT 58.311 29.630 0.00 0.00 40.89 3.56
124 125 8.054152 TCATTATCTTGAAACATAGCAAGCAA 57.946 30.769 0.00 0.00 40.89 3.91
125 126 7.628769 TCATTATCTTGAAACATAGCAAGCA 57.371 32.000 0.00 0.00 40.89 3.91
126 127 8.915871 TTTCATTATCTTGAAACATAGCAAGC 57.084 30.769 0.00 0.00 39.91 4.01
151 152 9.768662 GGATGGAAAAACATGCTCATATTATTT 57.231 29.630 0.00 0.00 36.42 1.40
152 153 8.084073 CGGATGGAAAAACATGCTCATATTATT 58.916 33.333 0.00 0.00 37.09 1.40
153 154 7.448161 TCGGATGGAAAAACATGCTCATATTAT 59.552 33.333 0.00 0.00 37.09 1.28
154 155 6.770303 TCGGATGGAAAAACATGCTCATATTA 59.230 34.615 0.00 0.00 37.09 0.98
156 157 5.132502 TCGGATGGAAAAACATGCTCATAT 58.867 37.500 0.00 0.00 37.09 1.78
157 158 4.522114 TCGGATGGAAAAACATGCTCATA 58.478 39.130 0.00 0.00 37.09 2.15
158 159 3.355378 TCGGATGGAAAAACATGCTCAT 58.645 40.909 0.00 0.00 37.09 2.90
159 160 2.789213 TCGGATGGAAAAACATGCTCA 58.211 42.857 0.00 0.00 37.09 4.26
160 161 3.848272 TTCGGATGGAAAAACATGCTC 57.152 42.857 0.00 0.00 37.09 4.26
169 170 4.912586 TGTGGATAGTTTTCGGATGGAAA 58.087 39.130 0.00 0.00 42.75 3.13
170 171 4.561500 TGTGGATAGTTTTCGGATGGAA 57.438 40.909 0.00 0.00 0.00 3.53
171 172 4.771114 ATGTGGATAGTTTTCGGATGGA 57.229 40.909 0.00 0.00 0.00 3.41
172 173 5.835113 AAATGTGGATAGTTTTCGGATGG 57.165 39.130 0.00 0.00 0.00 3.51
173 174 6.095440 AGGAAAATGTGGATAGTTTTCGGATG 59.905 38.462 0.00 0.00 40.80 3.51
175 176 5.566469 AGGAAAATGTGGATAGTTTTCGGA 58.434 37.500 0.00 0.00 40.80 4.55
176 177 5.897377 AGGAAAATGTGGATAGTTTTCGG 57.103 39.130 0.00 0.00 40.80 4.30
177 178 7.145932 AGAAGGAAAATGTGGATAGTTTTCG 57.854 36.000 0.00 0.00 40.80 3.46
181 182 8.803235 GGTTTAAGAAGGAAAATGTGGATAGTT 58.197 33.333 0.00 0.00 0.00 2.24
182 183 7.120726 CGGTTTAAGAAGGAAAATGTGGATAGT 59.879 37.037 0.00 0.00 0.00 2.12
183 184 7.120726 ACGGTTTAAGAAGGAAAATGTGGATAG 59.879 37.037 0.00 0.00 0.00 2.08
185 186 5.773176 ACGGTTTAAGAAGGAAAATGTGGAT 59.227 36.000 0.00 0.00 0.00 3.41
187 188 5.219633 CACGGTTTAAGAAGGAAAATGTGG 58.780 41.667 0.00 0.00 0.00 4.17
188 189 5.219633 CCACGGTTTAAGAAGGAAAATGTG 58.780 41.667 0.00 0.00 0.00 3.21
190 191 4.234574 GCCACGGTTTAAGAAGGAAAATG 58.765 43.478 0.00 0.00 0.00 2.32
191 192 3.892588 TGCCACGGTTTAAGAAGGAAAAT 59.107 39.130 0.00 0.00 0.00 1.82
192 193 3.288964 TGCCACGGTTTAAGAAGGAAAA 58.711 40.909 0.00 0.00 0.00 2.29
193 194 2.933573 TGCCACGGTTTAAGAAGGAAA 58.066 42.857 0.00 0.00 0.00 3.13
194 195 2.642154 TGCCACGGTTTAAGAAGGAA 57.358 45.000 0.00 0.00 0.00 3.36
195 196 2.642154 TTGCCACGGTTTAAGAAGGA 57.358 45.000 0.00 0.00 0.00 3.36
196 197 2.621526 ACTTTGCCACGGTTTAAGAAGG 59.378 45.455 0.00 0.00 0.00 3.46
197 198 3.314080 TGACTTTGCCACGGTTTAAGAAG 59.686 43.478 0.00 0.00 0.00 2.85
198 199 3.280295 TGACTTTGCCACGGTTTAAGAA 58.720 40.909 0.00 0.00 0.00 2.52
200 201 3.701532 TTGACTTTGCCACGGTTTAAG 57.298 42.857 0.00 0.00 0.00 1.85
201 202 3.632604 TCATTGACTTTGCCACGGTTTAA 59.367 39.130 0.00 0.00 0.00 1.52
203 204 2.028130 TCATTGACTTTGCCACGGTTT 58.972 42.857 0.00 0.00 0.00 3.27
204 205 1.686355 TCATTGACTTTGCCACGGTT 58.314 45.000 0.00 0.00 0.00 4.44
206 207 2.791383 TTTCATTGACTTTGCCACGG 57.209 45.000 0.00 0.00 0.00 4.94
207 208 3.242712 GTGTTTTCATTGACTTTGCCACG 59.757 43.478 0.00 0.00 0.00 4.94
208 209 4.268405 CAGTGTTTTCATTGACTTTGCCAC 59.732 41.667 0.00 0.00 39.43 5.01
209 210 4.159321 TCAGTGTTTTCATTGACTTTGCCA 59.841 37.500 0.00 0.00 40.67 4.92
210 211 4.681744 TCAGTGTTTTCATTGACTTTGCC 58.318 39.130 0.00 0.00 40.67 4.52
211 212 9.793252 ATATATCAGTGTTTTCATTGACTTTGC 57.207 29.630 0.00 0.00 46.35 3.68
224 225 8.506437 CGGATGCATACAAATATATCAGTGTTT 58.494 33.333 10.18 0.00 0.00 2.83
225 226 7.877612 TCGGATGCATACAAATATATCAGTGTT 59.122 33.333 10.18 0.00 0.00 3.32
231 232 7.307493 TGCTTCGGATGCATACAAATATATC 57.693 36.000 13.84 0.00 35.31 1.63
232 233 7.627088 GCTTGCTTCGGATGCATACAAATATAT 60.627 37.037 17.81 0.00 40.34 0.86
296 297 4.187694 CTGACTTGGAGCATAGAAGTTCC 58.812 47.826 0.00 0.00 39.14 3.62
305 306 0.035630 GCCTGACTGACTTGGAGCAT 60.036 55.000 0.00 0.00 0.00 3.79
306 307 1.123861 AGCCTGACTGACTTGGAGCA 61.124 55.000 0.00 0.00 0.00 4.26
308 309 1.805869 CAAGCCTGACTGACTTGGAG 58.194 55.000 1.17 0.00 37.68 3.86
312 313 1.763770 CCCCAAGCCTGACTGACTT 59.236 57.895 0.00 0.00 0.00 3.01
341 342 5.327091 CAGCAAGTTCTGGTTCATTAATCG 58.673 41.667 0.00 0.00 31.85 3.34
349 350 3.375782 AATTGCAGCAAGTTCTGGTTC 57.624 42.857 14.47 0.00 34.74 3.62
412 1825 3.868077 GCGATGAGAGCACTAATGAACTT 59.132 43.478 0.00 0.00 34.19 2.66
420 1833 0.395724 TCCAGGCGATGAGAGCACTA 60.396 55.000 0.00 0.00 36.08 2.74
425 1838 1.617357 TGATGATCCAGGCGATGAGAG 59.383 52.381 0.00 0.00 0.00 3.20
446 1860 2.808315 CCACCTCATCTCGACCCG 59.192 66.667 0.00 0.00 0.00 5.28
492 1906 3.944422 AAATTACGCGTGATGATCCAC 57.056 42.857 24.59 0.00 0.00 4.02
590 2006 0.885879 ACAGTACGCGATCTGAACCA 59.114 50.000 29.59 0.00 35.84 3.67
654 2084 9.601217 GGTCTTGTTCTGTATGTATAGTTGATT 57.399 33.333 0.00 0.00 0.00 2.57
656 2086 7.553334 GGGTCTTGTTCTGTATGTATAGTTGA 58.447 38.462 0.00 0.00 0.00 3.18
657 2087 6.475727 CGGGTCTTGTTCTGTATGTATAGTTG 59.524 42.308 0.00 0.00 0.00 3.16
682 2112 3.644884 TTCTTCAGGACTTGACGACTC 57.355 47.619 0.00 0.00 34.19 3.36
960 2456 0.984961 AGCTAGGCTGGAATGCTGGA 60.985 55.000 0.43 0.00 37.57 3.86
961 2457 1.530771 AGCTAGGCTGGAATGCTGG 59.469 57.895 0.43 0.00 37.57 4.85
1007 2503 1.704628 TGAGATCAACTGGGGAAGCAA 59.295 47.619 0.00 0.00 0.00 3.91
1026 2522 1.193203 GTGAGTTGTGACACGATGCTG 59.807 52.381 0.00 0.00 0.00 4.41
1042 2538 0.538057 AGGTGCATGTGGGTTGTGAG 60.538 55.000 0.00 0.00 0.00 3.51
1143 2660 1.672030 TGCTGCTTCGTGTCCATGG 60.672 57.895 4.97 4.97 0.00 3.66
1146 2663 2.280797 GGTGCTGCTTCGTGTCCA 60.281 61.111 0.00 0.00 0.00 4.02
1147 2664 2.029844 GAGGTGCTGCTTCGTGTCC 61.030 63.158 0.00 0.00 0.00 4.02
1149 2666 2.356313 CGAGGTGCTGCTTCGTGT 60.356 61.111 0.00 0.00 41.08 4.49
1150 2667 3.782244 GCGAGGTGCTGCTTCGTG 61.782 66.667 17.79 1.79 46.58 4.35
1666 4464 1.594862 CGCTCTGATTGATTCGTTCCC 59.405 52.381 0.00 0.00 0.00 3.97
1738 4536 1.800586 CCATGATCTAAATGCCCGTCG 59.199 52.381 0.00 0.00 0.00 5.12
1754 4561 9.730705 AGTATGAAGTATGGAATATGAACCATG 57.269 33.333 15.26 0.00 45.08 3.66
1761 4568 8.839343 TGTTTGCAGTATGAAGTATGGAATATG 58.161 33.333 0.00 0.00 39.69 1.78
1765 4572 7.537715 CATTGTTTGCAGTATGAAGTATGGAA 58.462 34.615 0.00 0.00 39.69 3.53
1766 4573 7.087409 CATTGTTTGCAGTATGAAGTATGGA 57.913 36.000 0.00 0.00 39.69 3.41
1826 4633 9.836864 TTCACTTGATGTATCATTATGCTTACT 57.163 29.630 0.00 0.00 36.56 2.24
1828 4635 9.612066 TGTTCACTTGATGTATCATTATGCTTA 57.388 29.630 0.00 0.00 36.56 3.09
1829 4636 8.510243 TGTTCACTTGATGTATCATTATGCTT 57.490 30.769 0.00 0.00 36.56 3.91
1868 6980 4.122776 AGATCCATGAACGTAGCAATCAC 58.877 43.478 0.00 0.00 0.00 3.06
1869 6981 4.406648 AGATCCATGAACGTAGCAATCA 57.593 40.909 0.00 0.00 0.00 2.57
1870 6982 8.598924 CATATAAGATCCATGAACGTAGCAATC 58.401 37.037 0.00 0.00 0.00 2.67
1871 6983 7.550551 CCATATAAGATCCATGAACGTAGCAAT 59.449 37.037 0.00 0.00 0.00 3.56
1872 6984 6.873605 CCATATAAGATCCATGAACGTAGCAA 59.126 38.462 0.00 0.00 0.00 3.91
1873 6985 6.210584 TCCATATAAGATCCATGAACGTAGCA 59.789 38.462 0.00 0.00 0.00 3.49
1874 6986 6.631016 TCCATATAAGATCCATGAACGTAGC 58.369 40.000 0.00 0.00 0.00 3.58
1875 6987 8.056407 TCTCCATATAAGATCCATGAACGTAG 57.944 38.462 0.00 0.00 0.00 3.51
1876 6988 8.595362 ATCTCCATATAAGATCCATGAACGTA 57.405 34.615 0.00 0.00 0.00 3.57
1877 6989 6.918067 TCTCCATATAAGATCCATGAACGT 57.082 37.500 0.00 0.00 0.00 3.99
1886 6998 5.330455 TGCACGGATCTCCATATAAGATC 57.670 43.478 14.68 14.68 45.54 2.75
1887 6999 5.745312 TTGCACGGATCTCCATATAAGAT 57.255 39.130 0.00 0.53 36.19 2.40
1888 7000 5.545063 TTTGCACGGATCTCCATATAAGA 57.455 39.130 0.00 0.00 35.14 2.10
1889 7001 6.808008 ATTTTGCACGGATCTCCATATAAG 57.192 37.500 0.00 0.00 35.14 1.73
1890 7002 7.581213 AAATTTTGCACGGATCTCCATATAA 57.419 32.000 0.00 0.00 35.14 0.98
1891 7003 7.502226 AGAAAATTTTGCACGGATCTCCATATA 59.498 33.333 8.47 0.00 35.14 0.86
1892 7004 6.322201 AGAAAATTTTGCACGGATCTCCATAT 59.678 34.615 8.47 0.00 35.14 1.78
1893 7005 5.652014 AGAAAATTTTGCACGGATCTCCATA 59.348 36.000 8.47 0.00 35.14 2.74
1894 7006 4.463891 AGAAAATTTTGCACGGATCTCCAT 59.536 37.500 8.47 0.00 35.14 3.41
1895 7007 3.826157 AGAAAATTTTGCACGGATCTCCA 59.174 39.130 8.47 0.00 35.14 3.86
1896 7008 4.440839 AGAAAATTTTGCACGGATCTCC 57.559 40.909 8.47 0.00 0.00 3.71
1897 7009 6.769608 AAAAGAAAATTTTGCACGGATCTC 57.230 33.333 8.47 0.00 0.00 2.75
1898 7010 8.655651 TTAAAAAGAAAATTTTGCACGGATCT 57.344 26.923 8.47 0.00 34.51 2.75
1899 7011 9.877137 AATTAAAAAGAAAATTTTGCACGGATC 57.123 25.926 8.47 0.00 34.51 3.36
1951 7063 8.421673 ACTAAACAAAGTCTAAGTCAAGTGAC 57.578 34.615 3.12 3.12 45.08 3.67
1952 7064 8.644318 GACTAAACAAAGTCTAAGTCAAGTGA 57.356 34.615 0.00 0.00 42.21 3.41
1964 7076 5.399892 CACTCGACTGAGACTAAACAAAGTC 59.600 44.000 0.00 0.00 45.57 3.01
1965 7077 5.067413 TCACTCGACTGAGACTAAACAAAGT 59.933 40.000 0.00 0.00 45.57 2.66
1966 7078 5.520632 TCACTCGACTGAGACTAAACAAAG 58.479 41.667 0.00 0.00 45.57 2.77
1967 7079 5.298527 TCTCACTCGACTGAGACTAAACAAA 59.701 40.000 17.60 0.00 45.57 2.83
1968 7080 4.820173 TCTCACTCGACTGAGACTAAACAA 59.180 41.667 17.60 0.00 45.57 2.83
1969 7081 4.386711 TCTCACTCGACTGAGACTAAACA 58.613 43.478 17.60 0.00 45.57 2.83
1976 7088 2.678479 GCTAGGTCTCACTCGACTGAGA 60.678 54.545 17.60 17.60 45.57 3.27
1978 7090 1.679336 GGCTAGGTCTCACTCGACTGA 60.679 57.143 0.00 0.00 34.38 3.41
1979 7091 0.736053 GGCTAGGTCTCACTCGACTG 59.264 60.000 0.00 0.00 34.38 3.51
1980 7092 0.328592 TGGCTAGGTCTCACTCGACT 59.671 55.000 0.00 0.00 34.38 4.18
1981 7093 0.452585 GTGGCTAGGTCTCACTCGAC 59.547 60.000 0.00 0.00 0.00 4.20
1982 7094 0.037734 TGTGGCTAGGTCTCACTCGA 59.962 55.000 0.00 0.00 33.04 4.04
1983 7095 0.171455 GTGTGGCTAGGTCTCACTCG 59.829 60.000 0.00 0.00 33.04 4.18
1984 7096 0.533032 GGTGTGGCTAGGTCTCACTC 59.467 60.000 4.75 0.00 33.04 3.51
1985 7097 0.905337 GGGTGTGGCTAGGTCTCACT 60.905 60.000 4.75 0.00 33.04 3.41
1986 7098 0.905337 AGGGTGTGGCTAGGTCTCAC 60.905 60.000 0.00 0.00 0.00 3.51
1987 7099 0.708209 TAGGGTGTGGCTAGGTCTCA 59.292 55.000 0.00 0.00 0.00 3.27
1988 7100 1.861982 TTAGGGTGTGGCTAGGTCTC 58.138 55.000 0.00 0.00 0.00 3.36
1989 7101 2.337359 TTTAGGGTGTGGCTAGGTCT 57.663 50.000 0.00 0.00 0.00 3.85
1990 7102 3.008704 TCTTTTTAGGGTGTGGCTAGGTC 59.991 47.826 0.00 0.00 0.00 3.85
1991 7103 2.983898 TCTTTTTAGGGTGTGGCTAGGT 59.016 45.455 0.00 0.00 0.00 3.08
1992 7104 3.713826 TCTTTTTAGGGTGTGGCTAGG 57.286 47.619 0.00 0.00 0.00 3.02
1993 7105 6.650120 TCTATTCTTTTTAGGGTGTGGCTAG 58.350 40.000 0.00 0.00 0.00 3.42
1994 7106 6.630203 TCTATTCTTTTTAGGGTGTGGCTA 57.370 37.500 0.00 0.00 0.00 3.93
1995 7107 5.514500 TCTATTCTTTTTAGGGTGTGGCT 57.486 39.130 0.00 0.00 0.00 4.75
1996 7108 5.944007 TCTTCTATTCTTTTTAGGGTGTGGC 59.056 40.000 0.00 0.00 0.00 5.01
1997 7109 6.940298 TGTCTTCTATTCTTTTTAGGGTGTGG 59.060 38.462 0.00 0.00 0.00 4.17
1998 7110 7.979444 TGTCTTCTATTCTTTTTAGGGTGTG 57.021 36.000 0.00 0.00 0.00 3.82
1999 7111 8.990163 TTTGTCTTCTATTCTTTTTAGGGTGT 57.010 30.769 0.00 0.00 0.00 4.16
2054 7166 1.980844 CATGCACACAAACATCTTCGC 59.019 47.619 0.00 0.00 0.00 4.70
2056 7168 4.801891 ACATCATGCACACAAACATCTTC 58.198 39.130 0.00 0.00 0.00 2.87
2071 7183 6.361481 CGCTAAAAATTGGCATAGACATCATG 59.639 38.462 0.00 0.00 36.91 3.07
2073 7185 5.356751 ACGCTAAAAATTGGCATAGACATCA 59.643 36.000 0.00 0.00 36.91 3.07
2080 7192 8.029522 TGTTTAATCACGCTAAAAATTGGCATA 58.970 29.630 0.00 0.00 36.91 3.14
2081 7193 6.870965 TGTTTAATCACGCTAAAAATTGGCAT 59.129 30.769 0.00 0.00 36.91 4.40
2084 7196 8.687824 AGATGTTTAATCACGCTAAAAATTGG 57.312 30.769 0.00 0.00 0.00 3.16
2118 7230 6.405538 ACCTCAAATTTGTCTTTTTGCTGAA 58.594 32.000 17.47 0.00 33.77 3.02
2128 7241 7.847096 ACTTTTACCAAACCTCAAATTTGTCT 58.153 30.769 17.47 0.00 35.65 3.41
2139 7252 9.990360 CATAACCAATAAACTTTTACCAAACCT 57.010 29.630 0.00 0.00 0.00 3.50
2140 7253 8.714179 GCATAACCAATAAACTTTTACCAAACC 58.286 33.333 0.00 0.00 0.00 3.27
2141 7254 9.262358 TGCATAACCAATAAACTTTTACCAAAC 57.738 29.630 0.00 0.00 0.00 2.93
2142 7255 9.262358 GTGCATAACCAATAAACTTTTACCAAA 57.738 29.630 0.00 0.00 0.00 3.28
2144 7257 8.085296 CAGTGCATAACCAATAAACTTTTACCA 58.915 33.333 0.00 0.00 0.00 3.25
2145 7258 8.085909 ACAGTGCATAACCAATAAACTTTTACC 58.914 33.333 0.00 0.00 0.00 2.85
2146 7259 9.471084 AACAGTGCATAACCAATAAACTTTTAC 57.529 29.630 0.00 0.00 0.00 2.01
2152 7266 6.364976 GTCCAAACAGTGCATAACCAATAAAC 59.635 38.462 0.00 0.00 0.00 2.01
2153 7267 6.451393 GTCCAAACAGTGCATAACCAATAAA 58.549 36.000 0.00 0.00 0.00 1.40
2160 7274 1.199097 CCGGTCCAAACAGTGCATAAC 59.801 52.381 0.00 0.00 0.00 1.89
2189 7303 6.427441 TGGAGATCTTAGTAGCTCTCAGAAA 58.573 40.000 0.00 0.00 42.71 2.52
2194 7308 6.270064 GTGTTTGGAGATCTTAGTAGCTCTC 58.730 44.000 0.00 0.00 41.05 3.20
2222 7336 2.198827 TGTGATCCGTGCCAATTTCT 57.801 45.000 0.00 0.00 0.00 2.52
2223 7337 2.801063 CATGTGATCCGTGCCAATTTC 58.199 47.619 0.00 0.00 0.00 2.17
2237 7351 4.398988 GGGAATATGTTTGAGTGCATGTGA 59.601 41.667 0.00 0.00 0.00 3.58
2322 7438 2.292845 CTGCACTCGAGCTCATCTGATA 59.707 50.000 13.61 0.00 34.99 2.15
2325 7441 0.455005 TCTGCACTCGAGCTCATCTG 59.545 55.000 13.61 2.95 34.99 2.90
2327 7443 2.222007 ATTCTGCACTCGAGCTCATC 57.778 50.000 13.61 0.00 34.99 2.92
2332 7448 0.723981 GTCCAATTCTGCACTCGAGC 59.276 55.000 13.61 0.00 0.00 5.03
2398 7517 6.565247 CGGAACTGTCAGTAATGTTTGTAACC 60.565 42.308 5.77 0.00 0.00 2.85
2402 7521 4.272504 CACGGAACTGTCAGTAATGTTTGT 59.727 41.667 5.77 0.00 30.33 2.83
2414 7533 4.802563 GCCTATAGTTTACACGGAACTGTC 59.197 45.833 0.00 0.00 37.84 3.51
2415 7534 4.676196 CGCCTATAGTTTACACGGAACTGT 60.676 45.833 0.00 0.00 37.84 3.55
2419 7538 3.443329 TGTCGCCTATAGTTTACACGGAA 59.557 43.478 0.00 0.00 0.00 4.30
2444 7709 8.160106 TCCCAAAAATTAAAATGCCACTACAAT 58.840 29.630 0.00 0.00 0.00 2.71
2449 7714 6.654582 GTGATCCCAAAAATTAAAATGCCACT 59.345 34.615 0.00 0.00 0.00 4.00
2576 7849 5.921408 GGTGATCTACTGATCCGATTGTAAC 59.079 44.000 0.00 0.00 46.34 2.50
2585 7858 3.189702 GTCGCTAGGTGATCTACTGATCC 59.810 52.174 0.00 0.00 46.34 3.36
2586 7859 3.815962 TGTCGCTAGGTGATCTACTGATC 59.184 47.826 0.00 0.00 46.89 2.92
2587 7860 3.821748 TGTCGCTAGGTGATCTACTGAT 58.178 45.455 0.00 0.00 35.26 2.90
2613 7886 3.493699 CCTTTGACTCACTCCGGTGTTTA 60.494 47.826 6.39 0.00 43.41 2.01
2621 7894 2.079925 GATGTGCCTTTGACTCACTCC 58.920 52.381 0.00 0.00 0.00 3.85
2625 7898 1.795768 GACGATGTGCCTTTGACTCA 58.204 50.000 0.00 0.00 0.00 3.41
2628 7901 0.438830 GACGACGATGTGCCTTTGAC 59.561 55.000 0.00 0.00 0.00 3.18
2631 7904 1.337728 TGATGACGACGATGTGCCTTT 60.338 47.619 0.00 0.00 0.00 3.11
2638 7911 1.611006 AGAGGGATGATGACGACGATG 59.389 52.381 0.00 0.00 0.00 3.84
2639 7912 1.988293 AGAGGGATGATGACGACGAT 58.012 50.000 0.00 0.00 0.00 3.73
2640 7913 1.763968 AAGAGGGATGATGACGACGA 58.236 50.000 0.00 0.00 0.00 4.20
2645 7918 2.555199 CGGTGAAAGAGGGATGATGAC 58.445 52.381 0.00 0.00 0.00 3.06
2651 7924 1.196012 GACTCCGGTGAAAGAGGGAT 58.804 55.000 11.17 0.00 34.27 3.85
2652 7925 1.248785 CGACTCCGGTGAAAGAGGGA 61.249 60.000 11.17 0.00 34.27 4.20
2665 7938 3.982576 ACAACAACATTTTCCGACTCC 57.017 42.857 0.00 0.00 0.00 3.85
2669 7942 7.442969 ACTGTCTATTACAACAACATTTTCCGA 59.557 33.333 0.00 0.00 37.74 4.55
2671 7944 8.564574 TGACTGTCTATTACAACAACATTTTCC 58.435 33.333 9.51 0.00 37.74 3.13
2702 7975 2.447408 TGAGGCCTTTGCATGATGAT 57.553 45.000 6.77 0.00 40.13 2.45
2705 7978 2.444388 TCCTATGAGGCCTTTGCATGAT 59.556 45.455 6.77 0.00 40.13 2.45
2744 8017 2.028876 TCTCTTCATCGGCGGTGATTA 58.971 47.619 25.04 13.80 0.00 1.75
2751 8024 0.248498 TACGCTTCTCTTCATCGGCG 60.248 55.000 0.00 0.00 46.47 6.46
2763 8036 7.381139 TGGTTTGATTCTTTTGATTTACGCTTC 59.619 33.333 0.00 0.00 0.00 3.86
2766 8039 6.640907 ACTGGTTTGATTCTTTTGATTTACGC 59.359 34.615 0.00 0.00 0.00 4.42
2775 8048 7.556275 TCTTGTGTCTACTGGTTTGATTCTTTT 59.444 33.333 0.00 0.00 0.00 2.27
2788 8061 2.095161 GTCCTCGGTCTTGTGTCTACTG 60.095 54.545 0.00 0.00 0.00 2.74
2789 8062 2.161030 GTCCTCGGTCTTGTGTCTACT 58.839 52.381 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.