Multiple sequence alignment - TraesCS5B01G482100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G482100 chr5B 100.000 2450 0 0 1 2450 654899933 654897484 0.000000e+00 4525
1 TraesCS5B01G482100 chr5B 87.361 269 15 10 1715 1975 16491845 16492102 8.570000e-75 291
2 TraesCS5B01G482100 chr5B 92.432 185 14 0 1001 1185 654892797 654892613 5.190000e-67 265
3 TraesCS5B01G482100 chr5B 83.981 206 30 3 1275 1480 654892580 654892378 6.910000e-46 195
4 TraesCS5B01G482100 chr5B 93.243 74 5 0 1106 1179 45707131 45707058 2.580000e-20 110
5 TraesCS5B01G482100 chr5D 88.552 1651 115 28 31 1642 519814592 519812977 0.000000e+00 1934
6 TraesCS5B01G482100 chr5D 92.276 479 36 1 1972 2450 421966271 421965794 0.000000e+00 678
7 TraesCS5B01G482100 chr5D 82.822 489 50 18 1001 1486 519808560 519808103 8.160000e-110 407
8 TraesCS5B01G482100 chr5D 85.606 264 21 9 1712 1973 362504836 362505084 6.720000e-66 261
9 TraesCS5B01G482100 chr5D 81.041 269 28 18 252 506 519809199 519808940 2.490000e-45 193
10 TraesCS5B01G482100 chr5D 77.876 339 50 13 1008 1322 519821738 519821401 1.160000e-43 187
11 TraesCS5B01G482100 chr5A 86.280 1086 73 25 641 1696 646565213 646564174 0.000000e+00 1110
12 TraesCS5B01G482100 chr5A 86.813 273 24 6 370 631 646565603 646565332 6.630000e-76 294
13 TraesCS5B01G482100 chr5A 81.232 341 50 8 1 332 646565932 646565597 1.870000e-66 263
14 TraesCS5B01G482100 chr5A 79.518 332 50 13 1001 1314 646597161 646596830 1.140000e-53 220
15 TraesCS5B01G482100 chr5A 88.000 150 14 2 990 1135 646556432 646556283 9.010000e-40 174
16 TraesCS5B01G482100 chr2B 93.734 383 24 0 2068 2450 550819755 550819373 2.110000e-160 575
17 TraesCS5B01G482100 chr2B 86.583 477 58 3 1974 2450 785924908 785925378 2.790000e-144 521
18 TraesCS5B01G482100 chr2B 88.843 242 15 5 1735 1975 654732611 654732841 1.110000e-73 287
19 TraesCS5B01G482100 chr2B 86.447 273 18 9 1712 1975 422987384 422987646 5.160000e-72 281
20 TraesCS5B01G482100 chr2B 87.190 242 19 5 1735 1975 654681861 654682091 5.190000e-67 265
21 TraesCS5B01G482100 chr2B 87.190 242 19 5 1735 1975 773824259 773824029 5.190000e-67 265
22 TraesCS5B01G482100 chr1D 87.137 482 56 3 1969 2450 276752020 276752495 2.140000e-150 542
23 TraesCS5B01G482100 chr3D 87.137 482 55 4 1969 2450 7409126 7409600 7.710000e-150 540
24 TraesCS5B01G482100 chr3D 86.947 475 56 4 1975 2449 453981003 453980535 1.670000e-146 529
25 TraesCS5B01G482100 chr3A 86.892 473 56 4 1978 2450 63380251 63379785 2.160000e-145 525
26 TraesCS5B01G482100 chr7D 86.667 480 55 6 1972 2450 534380669 534380198 7.760000e-145 523
27 TraesCS5B01G482100 chr7D 87.967 241 17 5 1735 1973 576325471 576325701 8.630000e-70 274
28 TraesCS5B01G482100 chr6B 86.555 476 58 3 1975 2450 663171825 663171356 1.000000e-143 520
29 TraesCS5B01G482100 chr6B 83.806 247 32 5 1735 1975 675792007 675791763 6.820000e-56 228
30 TraesCS5B01G482100 chr4B 88.430 242 13 4 1735 1975 499905290 499905517 6.670000e-71 278
31 TraesCS5B01G482100 chr4B 86.364 242 21 5 1735 1975 628972502 628972732 1.120000e-63 254
32 TraesCS5B01G482100 chrUn 87.190 242 18 5 1735 1975 23779208 23778979 1.870000e-66 263
33 TraesCS5B01G482100 chrUn 86.777 242 17 6 1735 1975 291093666 291093439 3.130000e-64 255
34 TraesCS5B01G482100 chr7B 85.606 264 22 7 1718 1975 218389233 218388980 1.870000e-66 263
35 TraesCS5B01G482100 chr1B 86.364 220 17 4 1758 1976 96511008 96511215 6.820000e-56 228
36 TraesCS5B01G482100 chr6D 90.385 156 5 3 1820 1975 412775147 412775002 1.920000e-46 196
37 TraesCS5B01G482100 chr1A 81.405 242 18 5 1735 1975 23165805 23165590 3.240000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G482100 chr5B 654897484 654899933 2449 True 4525.000000 4525 100.000000 1 2450 1 chr5B.!!$R2 2449
1 TraesCS5B01G482100 chr5D 519808103 519814592 6489 True 844.666667 1934 84.138333 31 1642 3 chr5D.!!$R3 1611
2 TraesCS5B01G482100 chr5A 646564174 646565932 1758 True 555.666667 1110 84.775000 1 1696 3 chr5A.!!$R3 1695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 303 0.0414 TGCAGCATTGACAAACGACG 60.041 50.0 0.0 0.0 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 6308 0.03213 CGACACGGATGGTAGGATGG 59.968 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.404293 CCATTTTATGGGTTAGTGCACTGTAC 60.404 42.308 29.57 23.91 46.86 2.90
48 49 3.307242 GCACTGTACTATTAGTGTGCAGC 59.693 47.826 22.89 12.08 46.88 5.25
55 56 0.881118 ATTAGTGTGCAGCCCAAACG 59.119 50.000 0.00 0.00 36.74 3.60
58 59 1.210155 GTGTGCAGCCCAAACGATC 59.790 57.895 0.00 0.00 0.00 3.69
63 64 1.269448 TGCAGCCCAAACGATCTTTTC 59.731 47.619 0.00 0.00 0.00 2.29
64 65 1.541588 GCAGCCCAAACGATCTTTTCT 59.458 47.619 0.00 0.00 0.00 2.52
66 67 2.162408 CAGCCCAAACGATCTTTTCTCC 59.838 50.000 0.00 0.00 0.00 3.71
179 185 1.142060 TCAGGTTTGGTGGACGTTGAT 59.858 47.619 0.00 0.00 0.00 2.57
201 211 0.322008 CTGACTTGGAGTTGGGAGGC 60.322 60.000 0.00 0.00 0.00 4.70
287 298 0.318022 CACGCTGCAGCATTGACAAA 60.318 50.000 36.03 0.00 42.21 2.83
288 299 0.318107 ACGCTGCAGCATTGACAAAC 60.318 50.000 36.03 5.05 42.21 2.93
289 300 1.332180 CGCTGCAGCATTGACAAACG 61.332 55.000 36.03 13.60 42.21 3.60
292 303 0.041400 TGCAGCATTGACAAACGACG 60.041 50.000 0.00 0.00 0.00 5.12
335 347 0.528684 GCACGAGAGATGGCACCTAC 60.529 60.000 0.00 0.00 0.00 3.18
367 379 0.526524 CCACTCCGAGCAGAACGATC 60.527 60.000 0.00 0.00 0.00 3.69
412 424 2.962569 GGACAAAAGCTTCGGGCC 59.037 61.111 0.00 2.36 43.05 5.80
450 462 1.079503 CCTGCTCTTTACGACTTGGC 58.920 55.000 0.00 0.00 0.00 4.52
473 485 3.354678 CCGGGTGGCTTTCACTTG 58.645 61.111 0.00 0.00 45.38 3.16
474 486 1.528309 CCGGGTGGCTTTCACTTGT 60.528 57.895 0.00 0.00 45.38 3.16
476 488 0.310854 CGGGTGGCTTTCACTTGTTC 59.689 55.000 0.00 0.00 45.38 3.18
503 515 4.836825 TGGGTGATTCATCTGTCTCTTTC 58.163 43.478 0.00 0.00 0.00 2.62
547 574 4.745837 TGGTAACCCGAAATTAAACACG 57.254 40.909 0.00 0.00 0.00 4.49
561 588 7.596749 AATTAAACACGTCCTCTGTTGATAG 57.403 36.000 0.00 0.00 32.07 2.08
574 601 1.398390 GTTGATAGCCGAAACCAGCAG 59.602 52.381 0.00 0.00 0.00 4.24
622 649 4.680237 TGAGGCGGCGTTGTCAGG 62.680 66.667 9.37 0.00 0.00 3.86
632 659 1.194772 GCGTTGTCAGGAAGTAAGTGC 59.805 52.381 0.00 0.00 0.00 4.40
658 794 2.349886 GTGCTAAACAGAATCGGAGCAG 59.650 50.000 0.00 0.00 40.38 4.24
698 834 5.776744 AGCAATAAAGCTTCAGGAAACAAG 58.223 37.500 0.00 0.00 43.70 3.16
710 846 2.165998 GGAAACAAGCTGAGCAGGATT 58.834 47.619 7.39 0.00 0.00 3.01
746 882 2.040213 GATGCCAATCTGACGGTGCG 62.040 60.000 0.00 0.00 0.00 5.34
749 885 3.853330 CAATCTGACGGTGCGGCG 61.853 66.667 0.51 0.51 37.93 6.46
776 915 2.093869 GGCTGGTCGTTGTTAGTGGATA 60.094 50.000 0.00 0.00 0.00 2.59
778 917 3.176708 CTGGTCGTTGTTAGTGGATACG 58.823 50.000 0.00 0.00 42.51 3.06
802 951 0.950836 TGTTGTCAGCCATTGTTCCG 59.049 50.000 0.00 0.00 0.00 4.30
813 962 1.069022 CATTGTTCCGGCTCACACTTG 60.069 52.381 0.00 0.00 0.00 3.16
827 976 4.122046 TCACACTTGTCACTGTCTCATTG 58.878 43.478 0.00 0.00 0.00 2.82
856 1005 9.710900 AAACCTAATTCTTTCCAATCAATTGTC 57.289 29.630 5.13 0.00 36.06 3.18
901 1054 3.193267 AGCAGCTCAAGTGTCAACAAAAA 59.807 39.130 0.00 0.00 0.00 1.94
939 1098 9.522804 AGTTCAGAATCTCGCTACTTATAAAAG 57.477 33.333 0.00 0.00 38.77 2.27
948 1111 4.809426 CGCTACTTATAAAAGGACACAGGG 59.191 45.833 0.00 0.00 37.01 4.45
994 1157 1.659954 GCAGAGCGATCGTAGCAGG 60.660 63.158 17.81 3.31 37.01 4.85
998 1161 1.202663 AGAGCGATCGTAGCAGGTAGA 60.203 52.381 17.81 0.00 37.01 2.59
1119 1285 2.030562 AACGCGTCCTTCAGGGTG 59.969 61.111 14.44 0.00 36.25 4.61
1219 1385 4.444081 CCCCGGAGTCGTCCCTCT 62.444 72.222 0.73 0.00 40.20 3.69
1221 1387 2.829458 CCGGAGTCGTCCCTCTCC 60.829 72.222 0.00 0.00 44.65 3.71
1225 1391 4.361971 AGTCGTCCCTCTCCGCCA 62.362 66.667 0.00 0.00 0.00 5.69
1226 1392 3.827898 GTCGTCCCTCTCCGCCAG 61.828 72.222 0.00 0.00 0.00 4.85
1232 1398 1.987855 CCCTCTCCGCCAGTACCAA 60.988 63.158 0.00 0.00 0.00 3.67
1273 1439 2.357034 ACGCTGGTGTTGCTACGG 60.357 61.111 0.00 0.00 0.00 4.02
1337 1503 0.624500 TTCCATGGGAAGGGGAGGAG 60.625 60.000 13.02 0.00 36.71 3.69
1454 1628 4.494350 ACATGTCATGTCTTTGAACTGC 57.506 40.909 12.87 0.00 39.92 4.40
1455 1629 3.254166 ACATGTCATGTCTTTGAACTGCC 59.746 43.478 12.87 0.00 39.92 4.85
1456 1630 1.872952 TGTCATGTCTTTGAACTGCCG 59.127 47.619 0.00 0.00 0.00 5.69
1457 1631 2.143122 GTCATGTCTTTGAACTGCCGA 58.857 47.619 0.00 0.00 0.00 5.54
1458 1632 2.096218 GTCATGTCTTTGAACTGCCGAC 60.096 50.000 0.00 0.00 0.00 4.79
1459 1633 1.136252 CATGTCTTTGAACTGCCGACG 60.136 52.381 0.00 0.00 0.00 5.12
1460 1634 0.179094 TGTCTTTGAACTGCCGACGT 60.179 50.000 0.00 0.00 0.00 4.34
1467 1641 2.711185 GAACTGCCGACGTTGCAACC 62.711 60.000 23.42 9.74 38.46 3.77
1471 1645 2.935955 CCGACGTTGCAACCTGTC 59.064 61.111 23.42 22.06 0.00 3.51
1489 1663 3.405831 TGTCTGCTGTAGTACGTACACT 58.594 45.455 26.55 12.22 36.67 3.55
1503 1677 5.209818 ACGTACACTCTTGATTTCTGGAA 57.790 39.130 0.00 0.00 0.00 3.53
1504 1678 5.607477 ACGTACACTCTTGATTTCTGGAAA 58.393 37.500 0.00 0.00 34.46 3.13
1513 1687 2.038426 TGATTTCTGGAAAGGCGACTGA 59.962 45.455 0.00 0.00 42.68 3.41
1530 1704 6.483851 CGACTGATCGTTAAACATCACTAG 57.516 41.667 0.00 0.00 43.66 2.57
1531 1705 6.028368 CGACTGATCGTTAAACATCACTAGT 58.972 40.000 0.00 0.00 43.66 2.57
1532 1706 7.184779 CGACTGATCGTTAAACATCACTAGTA 58.815 38.462 0.00 0.00 43.66 1.82
1533 1707 7.163845 CGACTGATCGTTAAACATCACTAGTAC 59.836 40.741 0.00 0.00 43.66 2.73
1534 1708 6.965500 ACTGATCGTTAAACATCACTAGTACG 59.035 38.462 0.00 0.00 0.00 3.67
1588 1763 8.612619 AGATTTTTCTTAATGCATACAGTACGG 58.387 33.333 0.00 0.00 0.00 4.02
1591 1766 3.133183 TCTTAATGCATACAGTACGGGCA 59.867 43.478 0.00 6.01 39.03 5.36
1629 1807 2.093306 TGTTCATGGTCGTGTCCATC 57.907 50.000 0.00 0.00 45.23 3.51
1634 1812 0.392998 ATGGTCGTGTCCATCTTGGC 60.393 55.000 4.33 0.00 43.85 4.52
1646 1824 5.183713 TGTCCATCTTGGCTTCTTTTATGTG 59.816 40.000 0.00 0.00 37.47 3.21
1664 2004 3.843999 TGTGACAAACTGAAAACCTTGC 58.156 40.909 0.00 0.00 0.00 4.01
1665 2005 3.256879 TGTGACAAACTGAAAACCTTGCA 59.743 39.130 0.00 0.00 0.00 4.08
1685 2025 4.471157 CAACAAATGTCAAATGGGTTGC 57.529 40.909 0.00 0.00 37.13 4.17
1691 2031 1.001068 TGTCAAATGGGTTGCTGCATG 59.999 47.619 1.84 0.00 37.13 4.06
1697 2037 0.835941 TGGGTTGCTGCATGGTTTTT 59.164 45.000 1.84 0.00 0.00 1.94
1698 2038 1.228533 GGGTTGCTGCATGGTTTTTG 58.771 50.000 1.84 0.00 0.00 2.44
1699 2039 1.228533 GGTTGCTGCATGGTTTTTGG 58.771 50.000 1.84 0.00 0.00 3.28
1701 2041 2.287769 GTTGCTGCATGGTTTTTGGTT 58.712 42.857 1.84 0.00 0.00 3.67
1702 2042 2.682352 GTTGCTGCATGGTTTTTGGTTT 59.318 40.909 1.84 0.00 0.00 3.27
1703 2043 2.286872 TGCTGCATGGTTTTTGGTTTG 58.713 42.857 0.00 0.00 0.00 2.93
1705 2045 2.682352 GCTGCATGGTTTTTGGTTTGTT 59.318 40.909 0.00 0.00 0.00 2.83
1706 2046 3.242706 GCTGCATGGTTTTTGGTTTGTTC 60.243 43.478 0.00 0.00 0.00 3.18
1707 2047 3.274288 TGCATGGTTTTTGGTTTGTTCC 58.726 40.909 0.00 0.00 0.00 3.62
1708 2048 2.286563 GCATGGTTTTTGGTTTGTTCCG 59.713 45.455 0.00 0.00 0.00 4.30
1709 2049 2.011540 TGGTTTTTGGTTTGTTCCGC 57.988 45.000 0.00 0.00 0.00 5.54
1710 2050 1.292061 GGTTTTTGGTTTGTTCCGCC 58.708 50.000 0.00 0.00 0.00 6.13
1712 2052 2.556257 GTTTTTGGTTTGTTCCGCCAT 58.444 42.857 0.00 0.00 31.71 4.40
1714 2054 2.990066 TTTGGTTTGTTCCGCCATTT 57.010 40.000 0.00 0.00 31.71 2.32
1718 2058 3.983741 TGGTTTGTTCCGCCATTTTAAG 58.016 40.909 0.00 0.00 0.00 1.85
1719 2059 3.637229 TGGTTTGTTCCGCCATTTTAAGA 59.363 39.130 0.00 0.00 0.00 2.10
1722 2062 5.524281 GGTTTGTTCCGCCATTTTAAGAAAA 59.476 36.000 0.00 0.00 34.41 2.29
1723 2063 6.037281 GGTTTGTTCCGCCATTTTAAGAAAAA 59.963 34.615 0.00 0.00 38.87 1.94
1725 2065 5.293560 TGTTCCGCCATTTTAAGAAAAAGG 58.706 37.500 2.35 2.35 41.05 3.11
1727 2067 5.128992 TCCGCCATTTTAAGAAAAAGGTC 57.871 39.130 7.54 1.17 40.42 3.85
1728 2068 4.021807 TCCGCCATTTTAAGAAAAAGGTCC 60.022 41.667 7.54 0.00 40.42 4.46
1729 2069 4.242475 CGCCATTTTAAGAAAAAGGTCCC 58.758 43.478 7.54 0.00 40.42 4.46
1730 2070 4.575885 GCCATTTTAAGAAAAAGGTCCCC 58.424 43.478 7.54 0.00 40.42 4.81
1731 2071 4.564821 GCCATTTTAAGAAAAAGGTCCCCC 60.565 45.833 7.54 0.00 40.42 5.40
1751 2091 6.884280 CCCCCTTATTACAAAGTGATCATC 57.116 41.667 0.00 0.00 0.00 2.92
1752 2092 5.770162 CCCCCTTATTACAAAGTGATCATCC 59.230 44.000 0.00 0.00 0.00 3.51
1753 2093 6.364701 CCCCTTATTACAAAGTGATCATCCA 58.635 40.000 0.00 0.00 0.00 3.41
1754 2094 6.833416 CCCCTTATTACAAAGTGATCATCCAA 59.167 38.462 0.00 0.00 0.00 3.53
1755 2095 7.506938 CCCCTTATTACAAAGTGATCATCCAAT 59.493 37.037 0.00 0.00 0.00 3.16
1756 2096 9.573166 CCCTTATTACAAAGTGATCATCCAATA 57.427 33.333 0.00 0.00 0.00 1.90
1761 2101 6.515272 ACAAAGTGATCATCCAATACAACC 57.485 37.500 0.00 0.00 0.00 3.77
1762 2102 6.009589 ACAAAGTGATCATCCAATACAACCA 58.990 36.000 0.00 0.00 0.00 3.67
1763 2103 6.493115 ACAAAGTGATCATCCAATACAACCAA 59.507 34.615 0.00 0.00 0.00 3.67
1764 2104 6.515272 AAGTGATCATCCAATACAACCAAC 57.485 37.500 0.00 0.00 0.00 3.77
1765 2105 4.635765 AGTGATCATCCAATACAACCAACG 59.364 41.667 0.00 0.00 0.00 4.10
1766 2106 4.634004 GTGATCATCCAATACAACCAACGA 59.366 41.667 0.00 0.00 0.00 3.85
1767 2107 5.296780 GTGATCATCCAATACAACCAACGAT 59.703 40.000 0.00 0.00 0.00 3.73
1768 2108 6.481976 GTGATCATCCAATACAACCAACGATA 59.518 38.462 0.00 0.00 0.00 2.92
1769 2109 6.705825 TGATCATCCAATACAACCAACGATAG 59.294 38.462 0.00 0.00 46.19 2.08
1770 2110 5.364778 TCATCCAATACAACCAACGATAGG 58.635 41.667 0.00 0.00 43.77 2.57
1771 2111 4.829872 TCCAATACAACCAACGATAGGT 57.170 40.909 0.00 0.00 42.34 3.08
1779 2119 2.511600 AACGATAGGTGCTGCGGC 60.512 61.111 11.65 11.65 43.77 6.53
1780 2120 4.873129 ACGATAGGTGCTGCGGCG 62.873 66.667 13.96 0.51 40.77 6.46
1782 2122 4.221422 GATAGGTGCTGCGGCGGA 62.221 66.667 14.15 4.40 42.25 5.54
1783 2123 3.733344 GATAGGTGCTGCGGCGGAA 62.733 63.158 14.15 0.00 42.25 4.30
1784 2124 3.740128 ATAGGTGCTGCGGCGGAAG 62.740 63.158 14.15 0.78 42.25 3.46
1797 2137 1.133253 CGGAAGCAGCACAATCACG 59.867 57.895 0.00 0.00 0.00 4.35
1798 2138 1.568612 CGGAAGCAGCACAATCACGT 61.569 55.000 0.00 0.00 0.00 4.49
1799 2139 0.166814 GGAAGCAGCACAATCACGTC 59.833 55.000 0.00 0.00 0.00 4.34
1800 2140 0.166814 GAAGCAGCACAATCACGTCC 59.833 55.000 0.00 0.00 0.00 4.79
1801 2141 0.534877 AAGCAGCACAATCACGTCCA 60.535 50.000 0.00 0.00 0.00 4.02
1802 2142 0.534877 AGCAGCACAATCACGTCCAA 60.535 50.000 0.00 0.00 0.00 3.53
1857 2197 3.824806 CGATAACGGCGGATCGAC 58.175 61.111 30.40 9.94 46.19 4.20
1859 2199 0.593008 CGATAACGGCGGATCGACAA 60.593 55.000 30.40 2.14 46.19 3.18
1861 2201 1.928503 GATAACGGCGGATCGACAAAA 59.071 47.619 13.24 0.00 32.52 2.44
1862 2202 1.793258 TAACGGCGGATCGACAAAAA 58.207 45.000 13.24 0.00 32.52 1.94
1863 2203 0.236449 AACGGCGGATCGACAAAAAC 59.764 50.000 13.24 0.00 32.52 2.43
1864 2204 1.225637 CGGCGGATCGACAAAAACG 60.226 57.895 0.00 0.00 32.52 3.60
1866 2206 0.179233 GGCGGATCGACAAAAACGAC 60.179 55.000 0.00 0.00 42.37 4.34
1867 2207 0.515717 GCGGATCGACAAAAACGACG 60.516 55.000 0.00 0.00 42.37 5.12
1868 2208 0.092351 CGGATCGACAAAAACGACGG 59.908 55.000 0.00 0.00 42.37 4.79
1870 2210 1.389106 GGATCGACAAAAACGACGGAG 59.611 52.381 0.00 0.00 42.37 4.63
1871 2211 0.788391 ATCGACAAAAACGACGGAGC 59.212 50.000 0.00 0.00 42.37 4.70
1872 2212 1.203313 CGACAAAAACGACGGAGCC 59.797 57.895 0.00 0.00 0.00 4.70
1873 2213 1.219522 CGACAAAAACGACGGAGCCT 61.220 55.000 0.00 0.00 0.00 4.58
1874 2214 0.511653 GACAAAAACGACGGAGCCTC 59.488 55.000 0.00 0.00 0.00 4.70
1876 2216 2.315386 AAAAACGACGGAGCCTCGC 61.315 57.895 0.00 0.00 34.34 5.03
1899 2239 3.975246 TTGCGTCCACCGGAAATC 58.025 55.556 9.46 0.00 44.28 2.17
1901 2241 3.861263 GCGTCCACCGGAAATCGC 61.861 66.667 9.46 15.45 37.51 4.58
1902 2242 3.192922 CGTCCACCGGAAATCGCC 61.193 66.667 9.46 0.00 37.59 5.54
1903 2243 2.822701 GTCCACCGGAAATCGCCC 60.823 66.667 9.46 0.00 37.59 6.13
1904 2244 4.104183 TCCACCGGAAATCGCCCC 62.104 66.667 9.46 0.00 37.59 5.80
1928 2268 3.393360 CCCCCAAGCTTCGAGACT 58.607 61.111 0.00 0.00 0.00 3.24
1929 2269 1.219393 CCCCCAAGCTTCGAGACTC 59.781 63.158 0.00 0.00 0.00 3.36
1930 2270 1.219393 CCCCAAGCTTCGAGACTCC 59.781 63.158 0.00 0.00 0.00 3.85
1931 2271 1.153745 CCCAAGCTTCGAGACTCCG 60.154 63.158 0.00 0.00 0.00 4.63
1932 2272 1.595993 CCCAAGCTTCGAGACTCCGA 61.596 60.000 0.00 0.00 36.70 4.55
1948 2288 2.522638 CGAAGCGCCGGTACCAATC 61.523 63.158 13.54 0.00 0.00 2.67
1949 2289 1.448893 GAAGCGCCGGTACCAATCA 60.449 57.895 13.54 0.00 0.00 2.57
1951 2291 1.303091 AAGCGCCGGTACCAATCAAC 61.303 55.000 13.54 0.00 0.00 3.18
1953 2293 1.791662 CGCCGGTACCAATCAACAC 59.208 57.895 13.54 0.00 0.00 3.32
1954 2294 1.641123 CGCCGGTACCAATCAACACC 61.641 60.000 13.54 0.00 0.00 4.16
1955 2295 0.322187 GCCGGTACCAATCAACACCT 60.322 55.000 13.54 0.00 0.00 4.00
1957 2297 1.677820 CCGGTACCAATCAACACCTCC 60.678 57.143 13.54 0.00 0.00 4.30
1958 2298 1.002659 CGGTACCAATCAACACCTCCA 59.997 52.381 13.54 0.00 0.00 3.86
1960 2300 3.081804 GGTACCAATCAACACCTCCAAG 58.918 50.000 7.15 0.00 0.00 3.61
1961 2301 3.244770 GGTACCAATCAACACCTCCAAGA 60.245 47.826 7.15 0.00 0.00 3.02
1963 2303 3.490348 ACCAATCAACACCTCCAAGAAG 58.510 45.455 0.00 0.00 0.00 2.85
1964 2304 2.821969 CCAATCAACACCTCCAAGAAGG 59.178 50.000 0.00 0.00 42.55 3.46
1965 2305 2.821969 CAATCAACACCTCCAAGAAGGG 59.178 50.000 0.00 0.00 41.04 3.95
1966 2306 1.814429 TCAACACCTCCAAGAAGGGA 58.186 50.000 0.00 0.00 41.04 4.20
1969 2309 1.376037 CACCTCCAAGAAGGGACGC 60.376 63.158 0.00 0.00 41.04 5.19
1970 2310 2.125512 CCTCCAAGAAGGGACGCG 60.126 66.667 3.53 3.53 38.24 6.01
1971 2311 2.646175 CCTCCAAGAAGGGACGCGA 61.646 63.158 15.93 0.00 38.24 5.87
1972 2312 1.446272 CTCCAAGAAGGGACGCGAC 60.446 63.158 15.93 6.56 38.24 5.19
1973 2313 2.809601 CCAAGAAGGGACGCGACG 60.810 66.667 15.93 0.00 0.00 5.12
1975 2315 2.087009 CAAGAAGGGACGCGACGAC 61.087 63.158 15.93 3.01 0.00 4.34
1976 2316 2.266627 AAGAAGGGACGCGACGACT 61.267 57.895 15.93 5.77 0.00 4.18
1977 2317 1.803366 AAGAAGGGACGCGACGACTT 61.803 55.000 15.93 14.99 0.00 3.01
1978 2318 2.049433 AAGGGACGCGACGACTTG 60.049 61.111 15.93 0.00 0.00 3.16
1979 2319 2.744307 GAAGGGACGCGACGACTTGT 62.744 60.000 15.93 0.00 0.00 3.16
1980 2320 3.103911 GGGACGCGACGACTTGTG 61.104 66.667 15.93 0.00 0.00 3.33
1981 2321 2.354305 GGACGCGACGACTTGTGT 60.354 61.111 15.93 0.00 0.00 3.72
1982 2322 1.947642 GGACGCGACGACTTGTGTT 60.948 57.895 15.93 0.00 0.00 3.32
1984 2324 0.381428 GACGCGACGACTTGTGTTTG 60.381 55.000 15.93 0.00 0.00 2.93
1985 2325 1.079875 ACGCGACGACTTGTGTTTGT 61.080 50.000 15.93 0.00 0.00 2.83
1986 2326 0.650476 CGCGACGACTTGTGTTTGTG 60.650 55.000 0.00 0.00 0.00 3.33
1987 2327 0.372334 GCGACGACTTGTGTTTGTGT 59.628 50.000 0.00 0.00 0.00 3.72
1988 2328 1.850515 GCGACGACTTGTGTTTGTGTG 60.851 52.381 0.00 0.00 0.00 3.82
1990 2330 1.735571 GACGACTTGTGTTTGTGTGGT 59.264 47.619 0.00 0.00 0.00 4.16
1991 2331 1.735571 ACGACTTGTGTTTGTGTGGTC 59.264 47.619 0.00 0.00 0.00 4.02
1992 2332 1.267334 CGACTTGTGTTTGTGTGGTCG 60.267 52.381 0.00 0.00 38.86 4.79
1994 2334 0.588730 CTTGTGTTTGTGTGGTCGCG 60.589 55.000 0.00 0.00 0.00 5.87
1995 2335 1.983196 TTGTGTTTGTGTGGTCGCGG 61.983 55.000 6.13 0.00 0.00 6.46
1997 2337 4.659874 GTTTGTGTGGTCGCGGCG 62.660 66.667 17.70 17.70 0.00 6.46
2019 2508 3.790416 TTTGGCAGGCGGCTGAAGT 62.790 57.895 39.78 1.64 44.01 3.01
2022 2511 2.563427 GCAGGCGGCTGAAGTTTC 59.437 61.111 39.78 18.78 40.25 2.78
2023 2512 2.260869 GCAGGCGGCTGAAGTTTCA 61.261 57.895 39.78 0.00 40.25 2.69
2028 2517 0.109597 GCGGCTGAAGTTTCATGGTG 60.110 55.000 0.00 0.00 36.46 4.17
2030 2519 1.620822 GGCTGAAGTTTCATGGTGGT 58.379 50.000 0.00 0.00 36.46 4.16
2037 2526 4.709397 TGAAGTTTCATGGTGGTTCTTTGT 59.291 37.500 0.00 0.00 31.01 2.83
2039 2528 3.315191 AGTTTCATGGTGGTTCTTTGTCG 59.685 43.478 0.00 0.00 0.00 4.35
2040 2529 1.890876 TCATGGTGGTTCTTTGTCGG 58.109 50.000 0.00 0.00 0.00 4.79
2042 2531 0.179004 ATGGTGGTTCTTTGTCGGCA 60.179 50.000 0.00 0.00 0.00 5.69
2043 2532 1.098712 TGGTGGTTCTTTGTCGGCAC 61.099 55.000 0.00 0.00 0.00 5.01
2044 2533 0.818040 GGTGGTTCTTTGTCGGCACT 60.818 55.000 0.00 0.00 0.00 4.40
2045 2534 0.307760 GTGGTTCTTTGTCGGCACTG 59.692 55.000 0.00 0.00 0.00 3.66
2046 2535 1.282875 GGTTCTTTGTCGGCACTGC 59.717 57.895 0.00 0.00 0.00 4.40
2048 2537 0.235926 GTTCTTTGTCGGCACTGCTC 59.764 55.000 0.00 0.00 0.00 4.26
2049 2538 0.884704 TTCTTTGTCGGCACTGCTCC 60.885 55.000 0.00 0.00 0.00 4.70
2051 2540 1.572085 CTTTGTCGGCACTGCTCCAG 61.572 60.000 0.00 0.00 37.52 3.86
2052 2541 2.324014 TTTGTCGGCACTGCTCCAGT 62.324 55.000 0.00 0.00 46.51 4.00
2053 2542 2.433318 GTCGGCACTGCTCCAGTC 60.433 66.667 0.00 0.00 43.43 3.51
2055 2544 4.767255 CGGCACTGCTCCAGTCCC 62.767 72.222 0.00 0.00 43.43 4.46
2066 2555 4.838152 CAGTCCCGGCGTCCATGG 62.838 72.222 4.97 4.97 0.00 3.66
2068 2557 4.832608 GTCCCGGCGTCCATGGAC 62.833 72.222 31.59 31.59 37.73 4.02
2071 2560 4.838152 CCGGCGTCCATGGACCTG 62.838 72.222 34.05 28.64 41.76 4.00
2074 2563 4.760047 GCGTCCATGGACCTGCGT 62.760 66.667 34.05 0.00 41.76 5.24
2075 2564 2.047274 CGTCCATGGACCTGCGTT 60.047 61.111 34.05 0.00 41.76 4.84
2076 2565 2.100631 CGTCCATGGACCTGCGTTC 61.101 63.158 34.05 11.54 41.76 3.95
2077 2566 1.296715 GTCCATGGACCTGCGTTCT 59.703 57.895 31.37 0.00 39.08 3.01
2079 2568 0.036388 TCCATGGACCTGCGTTCTTC 60.036 55.000 11.44 0.00 0.00 2.87
2080 2569 0.321564 CCATGGACCTGCGTTCTTCA 60.322 55.000 5.56 0.00 0.00 3.02
2081 2570 1.081892 CATGGACCTGCGTTCTTCAG 58.918 55.000 0.00 0.00 0.00 3.02
2082 2571 0.687354 ATGGACCTGCGTTCTTCAGT 59.313 50.000 0.00 0.00 0.00 3.41
2083 2572 0.249868 TGGACCTGCGTTCTTCAGTG 60.250 55.000 0.00 0.00 0.00 3.66
2084 2573 0.249911 GGACCTGCGTTCTTCAGTGT 60.250 55.000 0.00 0.00 0.00 3.55
2085 2574 1.140816 GACCTGCGTTCTTCAGTGTC 58.859 55.000 0.00 0.00 0.00 3.67
2086 2575 0.249911 ACCTGCGTTCTTCAGTGTCC 60.250 55.000 0.00 0.00 0.00 4.02
2088 2577 1.609061 CCTGCGTTCTTCAGTGTCCAT 60.609 52.381 0.00 0.00 0.00 3.41
2089 2578 1.462283 CTGCGTTCTTCAGTGTCCATG 59.538 52.381 0.00 0.00 0.00 3.66
2092 2581 2.069273 CGTTCTTCAGTGTCCATGGTC 58.931 52.381 12.58 6.87 0.00 4.02
2093 2582 2.289072 CGTTCTTCAGTGTCCATGGTCT 60.289 50.000 12.58 6.35 0.00 3.85
2094 2583 3.070018 GTTCTTCAGTGTCCATGGTCTG 58.930 50.000 12.58 17.46 0.00 3.51
2096 2585 1.002888 CTTCAGTGTCCATGGTCTGCT 59.997 52.381 12.58 6.25 0.00 4.24
2097 2586 0.322648 TCAGTGTCCATGGTCTGCTG 59.677 55.000 12.58 17.16 0.00 4.41
2098 2587 0.675837 CAGTGTCCATGGTCTGCTGG 60.676 60.000 12.58 1.65 0.00 4.85
2099 2588 2.042831 GTGTCCATGGTCTGCTGGC 61.043 63.158 12.58 0.00 32.30 4.85
2100 2589 2.821366 GTCCATGGTCTGCTGGCG 60.821 66.667 12.58 0.00 32.30 5.69
2101 2590 3.321648 TCCATGGTCTGCTGGCGT 61.322 61.111 12.58 0.00 32.30 5.68
2103 2592 2.821366 CATGGTCTGCTGGCGTCC 60.821 66.667 0.00 0.00 0.00 4.79
2104 2593 4.101448 ATGGTCTGCTGGCGTCCC 62.101 66.667 0.00 0.00 0.00 4.46
2142 4833 2.480555 CGATTGACCGGTTGCTGC 59.519 61.111 9.42 0.00 0.00 5.25
2143 4834 2.480555 GATTGACCGGTTGCTGCG 59.519 61.111 9.42 0.00 0.00 5.18
2144 4835 3.667429 GATTGACCGGTTGCTGCGC 62.667 63.158 9.42 0.00 0.00 6.09
2156 6218 4.809496 CTGCGCCCCTTCCAGCAT 62.809 66.667 4.18 0.00 39.02 3.79
2159 6221 2.273449 CGCCCCTTCCAGCATCTT 59.727 61.111 0.00 0.00 0.00 2.40
2161 6223 1.821332 GCCCCTTCCAGCATCTTCG 60.821 63.158 0.00 0.00 0.00 3.79
2164 6226 0.035056 CCCTTCCAGCATCTTCGGTT 60.035 55.000 0.00 0.00 0.00 4.44
2167 6229 1.734465 CTTCCAGCATCTTCGGTTCAC 59.266 52.381 0.00 0.00 0.00 3.18
2168 6230 0.036388 TCCAGCATCTTCGGTTCACC 60.036 55.000 0.00 0.00 0.00 4.02
2179 6241 4.309950 GTTCACCGGCGTCCTGGT 62.310 66.667 6.01 0.00 39.66 4.00
2185 6247 4.814294 CGGCGTCCTGGTGGCTAC 62.814 72.222 0.00 0.00 0.00 3.58
2186 6248 4.814294 GGCGTCCTGGTGGCTACG 62.814 72.222 10.56 6.18 36.86 3.51
2197 6259 2.820037 GGCTACGCCTCCAGCAAC 60.820 66.667 0.00 0.00 46.69 4.17
2199 6261 2.391389 GCTACGCCTCCAGCAACAC 61.391 63.158 0.00 0.00 44.04 3.32
2200 6262 2.048597 TACGCCTCCAGCAACACG 60.049 61.111 0.00 0.00 44.04 4.49
2201 6263 3.583276 TACGCCTCCAGCAACACGG 62.583 63.158 0.00 0.00 44.04 4.94
2202 6264 4.680237 CGCCTCCAGCAACACGGA 62.680 66.667 0.00 0.00 44.04 4.69
2204 6266 2.743718 CCTCCAGCAACACGGAGT 59.256 61.111 4.83 0.00 46.31 3.85
2205 6267 1.071471 CCTCCAGCAACACGGAGTT 59.929 57.895 4.83 0.00 46.31 3.01
2218 6280 0.865769 CGGAGTTGTGTTTCCTTCCG 59.134 55.000 0.00 0.00 41.15 4.30
2219 6281 1.235724 GGAGTTGTGTTTCCTTCCGG 58.764 55.000 0.00 0.00 0.00 5.14
2220 6282 0.591659 GAGTTGTGTTTCCTTCCGGC 59.408 55.000 0.00 0.00 0.00 6.13
2221 6283 0.182775 AGTTGTGTTTCCTTCCGGCT 59.817 50.000 0.00 0.00 0.00 5.52
2223 6285 0.536460 TTGTGTTTCCTTCCGGCTCC 60.536 55.000 0.00 0.00 0.00 4.70
2224 6286 1.072505 GTGTTTCCTTCCGGCTCCA 59.927 57.895 0.00 0.00 0.00 3.86
2225 6287 0.955919 GTGTTTCCTTCCGGCTCCAG 60.956 60.000 0.00 0.00 0.00 3.86
2226 6288 1.375326 GTTTCCTTCCGGCTCCAGT 59.625 57.895 0.00 0.00 0.00 4.00
2227 6289 0.250770 GTTTCCTTCCGGCTCCAGTT 60.251 55.000 0.00 0.00 0.00 3.16
2228 6290 0.476771 TTTCCTTCCGGCTCCAGTTT 59.523 50.000 0.00 0.00 0.00 2.66
2231 6293 2.282180 TTCCGGCTCCAGTTTGCC 60.282 61.111 0.00 0.00 45.25 4.52
2235 6297 3.365265 GGCTCCAGTTTGCCGGTG 61.365 66.667 1.90 0.00 39.71 4.94
2236 6298 3.365265 GCTCCAGTTTGCCGGTGG 61.365 66.667 1.90 1.70 0.00 4.61
2256 6318 2.731571 GCTGGTCGCCATCCTACCA 61.732 63.158 0.00 0.00 40.94 3.25
2257 6319 2.044806 GCTGGTCGCCATCCTACCAT 62.045 60.000 0.00 0.00 42.23 3.55
2258 6320 0.034059 CTGGTCGCCATCCTACCATC 59.966 60.000 0.00 0.00 42.23 3.51
2260 6322 1.006102 GTCGCCATCCTACCATCCG 60.006 63.158 0.00 0.00 0.00 4.18
2261 6323 1.456892 TCGCCATCCTACCATCCGT 60.457 57.895 0.00 0.00 0.00 4.69
2262 6324 1.300931 CGCCATCCTACCATCCGTG 60.301 63.158 0.00 0.00 0.00 4.94
2263 6325 1.830145 GCCATCCTACCATCCGTGT 59.170 57.895 0.00 0.00 0.00 4.49
2264 6326 0.249911 GCCATCCTACCATCCGTGTC 60.250 60.000 0.00 0.00 0.00 3.67
2265 6327 0.032130 CCATCCTACCATCCGTGTCG 59.968 60.000 0.00 0.00 0.00 4.35
2266 6328 1.029681 CATCCTACCATCCGTGTCGA 58.970 55.000 0.00 0.00 0.00 4.20
2267 6329 1.030457 ATCCTACCATCCGTGTCGAC 58.970 55.000 9.11 9.11 0.00 4.20
2268 6330 0.034767 TCCTACCATCCGTGTCGACT 60.035 55.000 17.92 0.00 0.00 4.18
2270 6332 1.380524 CTACCATCCGTGTCGACTCT 58.619 55.000 17.92 0.00 0.00 3.24
2271 6333 1.331138 CTACCATCCGTGTCGACTCTC 59.669 57.143 17.92 6.51 0.00 3.20
2272 6334 0.322636 ACCATCCGTGTCGACTCTCT 60.323 55.000 17.92 0.00 0.00 3.10
2273 6335 0.099613 CCATCCGTGTCGACTCTCTG 59.900 60.000 17.92 9.89 0.00 3.35
2274 6336 0.524392 CATCCGTGTCGACTCTCTGC 60.524 60.000 17.92 0.00 0.00 4.26
2277 6339 2.574399 GTGTCGACTCTCTGCCCC 59.426 66.667 17.92 0.00 0.00 5.80
2278 6340 3.062466 TGTCGACTCTCTGCCCCG 61.062 66.667 17.92 0.00 0.00 5.73
2279 6341 4.500116 GTCGACTCTCTGCCCCGC 62.500 72.222 8.70 0.00 0.00 6.13
2280 6342 4.742649 TCGACTCTCTGCCCCGCT 62.743 66.667 0.00 0.00 0.00 5.52
2282 6344 4.828925 GACTCTCTGCCCCGCTGC 62.829 72.222 0.00 0.00 0.00 5.25
2290 6352 4.722700 GCCCCGCTGCCTCTTCAA 62.723 66.667 0.00 0.00 0.00 2.69
2292 6354 2.747855 CCCGCTGCCTCTTCAACC 60.748 66.667 0.00 0.00 0.00 3.77
2293 6355 2.747855 CCGCTGCCTCTTCAACCC 60.748 66.667 0.00 0.00 0.00 4.11
2295 6357 2.747855 GCTGCCTCTTCAACCCCG 60.748 66.667 0.00 0.00 0.00 5.73
2296 6358 2.750350 CTGCCTCTTCAACCCCGT 59.250 61.111 0.00 0.00 0.00 5.28
2298 6360 2.046217 GCCTCTTCAACCCCGTCC 60.046 66.667 0.00 0.00 0.00 4.79
2299 6361 2.890766 GCCTCTTCAACCCCGTCCA 61.891 63.158 0.00 0.00 0.00 4.02
2301 6363 1.003718 CTCTTCAACCCCGTCCACC 60.004 63.158 0.00 0.00 0.00 4.61
2302 6364 1.460689 TCTTCAACCCCGTCCACCT 60.461 57.895 0.00 0.00 0.00 4.00
2303 6365 0.178926 TCTTCAACCCCGTCCACCTA 60.179 55.000 0.00 0.00 0.00 3.08
2304 6366 0.036671 CTTCAACCCCGTCCACCTAC 60.037 60.000 0.00 0.00 0.00 3.18
2305 6367 0.763604 TTCAACCCCGTCCACCTACA 60.764 55.000 0.00 0.00 0.00 2.74
2306 6368 1.004200 CAACCCCGTCCACCTACAC 60.004 63.158 0.00 0.00 0.00 2.90
2312 6374 2.047560 GTCCACCTACACGGCACC 60.048 66.667 0.00 0.00 35.61 5.01
2313 6375 2.524640 TCCACCTACACGGCACCA 60.525 61.111 0.00 0.00 35.61 4.17
2314 6376 2.141448 TCCACCTACACGGCACCAA 61.141 57.895 0.00 0.00 35.61 3.67
2315 6377 1.002624 CCACCTACACGGCACCAAT 60.003 57.895 0.00 0.00 35.61 3.16
2316 6378 0.608035 CCACCTACACGGCACCAATT 60.608 55.000 0.00 0.00 35.61 2.32
2317 6379 0.521291 CACCTACACGGCACCAATTG 59.479 55.000 0.00 0.00 35.61 2.32
2327 6389 2.437850 CACCAATTGCAAAGCTCGC 58.562 52.632 1.71 1.17 0.00 5.03
2328 6390 1.081242 ACCAATTGCAAAGCTCGCG 60.081 52.632 1.71 0.00 0.00 5.87
2329 6391 1.081242 CCAATTGCAAAGCTCGCGT 60.081 52.632 5.77 0.00 0.00 6.01
2330 6392 0.664166 CCAATTGCAAAGCTCGCGTT 60.664 50.000 5.77 0.00 0.00 4.84
2331 6393 1.130955 CAATTGCAAAGCTCGCGTTT 58.869 45.000 5.77 0.00 0.00 3.60
2332 6394 1.522258 CAATTGCAAAGCTCGCGTTTT 59.478 42.857 5.77 2.99 0.00 2.43
2333 6395 1.851658 ATTGCAAAGCTCGCGTTTTT 58.148 40.000 5.77 2.61 0.00 1.94
2334 6396 0.919981 TTGCAAAGCTCGCGTTTTTG 59.080 45.000 20.21 20.21 35.47 2.44
2335 6397 1.199126 GCAAAGCTCGCGTTTTTGC 59.801 52.632 27.48 27.48 46.48 3.68
2336 6398 1.845985 CAAAGCTCGCGTTTTTGCC 59.154 52.632 5.77 0.00 0.00 4.52
2337 6399 1.657181 AAAGCTCGCGTTTTTGCCG 60.657 52.632 5.77 0.00 0.00 5.69
2338 6400 2.054140 AAAGCTCGCGTTTTTGCCGA 62.054 50.000 5.77 0.00 0.00 5.54
2339 6401 1.852067 AAGCTCGCGTTTTTGCCGAT 61.852 50.000 5.77 0.00 0.00 4.18
2340 6402 2.145905 GCTCGCGTTTTTGCCGATG 61.146 57.895 5.77 0.00 0.00 3.84
2341 6403 1.511887 CTCGCGTTTTTGCCGATGG 60.512 57.895 5.77 0.00 0.00 3.51
2380 6442 0.099082 CTTCTGAGGTAGCGGTCGAC 59.901 60.000 7.13 7.13 0.00 4.20
2381 6443 0.607217 TTCTGAGGTAGCGGTCGACA 60.607 55.000 18.91 0.00 0.00 4.35
2382 6444 0.393944 TCTGAGGTAGCGGTCGACAT 60.394 55.000 18.91 5.12 0.00 3.06
2383 6445 0.248661 CTGAGGTAGCGGTCGACATG 60.249 60.000 18.91 10.32 0.00 3.21
2386 6448 1.227263 GGTAGCGGTCGACATGCAT 60.227 57.895 27.03 17.08 0.00 3.96
2388 6450 0.806102 GTAGCGGTCGACATGCATGT 60.806 55.000 31.82 31.82 45.16 3.21
2389 6451 0.108377 TAGCGGTCGACATGCATGTT 60.108 50.000 31.82 17.24 41.95 2.71
2390 6452 0.955428 AGCGGTCGACATGCATGTTT 60.955 50.000 31.82 11.87 41.95 2.83
2391 6453 0.724549 GCGGTCGACATGCATGTTTA 59.275 50.000 31.82 20.24 41.95 2.01
2393 6455 1.999735 CGGTCGACATGCATGTTTACT 59.000 47.619 31.82 10.25 41.95 2.24
2394 6456 2.029244 CGGTCGACATGCATGTTTACTC 59.971 50.000 31.82 21.68 41.95 2.59
2395 6457 3.262420 GGTCGACATGCATGTTTACTCT 58.738 45.455 31.82 8.67 41.95 3.24
2396 6458 3.684788 GGTCGACATGCATGTTTACTCTT 59.315 43.478 31.82 7.87 41.95 2.85
2397 6459 4.436050 GGTCGACATGCATGTTTACTCTTG 60.436 45.833 31.82 12.30 41.95 3.02
2398 6460 3.125146 TCGACATGCATGTTTACTCTTGC 59.875 43.478 31.82 15.28 41.95 4.01
2399 6461 3.120234 CGACATGCATGTTTACTCTTGCA 60.120 43.478 31.82 9.04 46.70 4.08
2404 6466 5.300969 TGCATGTTTACTCTTGCATCTTC 57.699 39.130 0.00 0.00 41.30 2.87
2406 6468 4.337763 CATGTTTACTCTTGCATCTTCGC 58.662 43.478 0.00 0.00 0.00 4.70
2407 6469 2.411748 TGTTTACTCTTGCATCTTCGCG 59.588 45.455 0.00 0.00 33.35 5.87
2408 6470 2.363788 TTACTCTTGCATCTTCGCGT 57.636 45.000 5.77 0.00 33.35 6.01
2409 6471 1.909376 TACTCTTGCATCTTCGCGTC 58.091 50.000 5.77 0.00 33.35 5.19
2410 6472 0.737715 ACTCTTGCATCTTCGCGTCC 60.738 55.000 5.77 0.00 33.35 4.79
2411 6473 0.459237 CTCTTGCATCTTCGCGTCCT 60.459 55.000 5.77 0.00 33.35 3.85
2412 6474 0.737367 TCTTGCATCTTCGCGTCCTG 60.737 55.000 5.77 0.99 33.35 3.86
2413 6475 0.737367 CTTGCATCTTCGCGTCCTGA 60.737 55.000 5.77 0.50 33.35 3.86
2414 6476 0.108186 TTGCATCTTCGCGTCCTGAT 60.108 50.000 5.77 3.08 33.35 2.90
2418 6480 0.387202 ATCTTCGCGTCCTGATCTGG 59.613 55.000 12.30 12.30 0.00 3.86
2419 6481 1.880340 CTTCGCGTCCTGATCTGGC 60.880 63.158 13.60 8.11 0.00 4.85
2422 6484 3.838271 GCGTCCTGATCTGGCGGA 61.838 66.667 25.06 0.00 0.00 5.54
2423 6485 3.133014 CGTCCTGATCTGGCGGAT 58.867 61.111 8.96 8.96 37.37 4.18
2424 6486 1.806461 GCGTCCTGATCTGGCGGATA 61.806 60.000 25.06 5.54 34.33 2.59
2425 6487 0.891373 CGTCCTGATCTGGCGGATAT 59.109 55.000 20.04 0.00 34.33 1.63
2426 6488 1.403382 CGTCCTGATCTGGCGGATATG 60.403 57.143 20.04 5.00 34.33 1.78
2428 6490 0.251354 CCTGATCTGGCGGATATGGG 59.749 60.000 9.22 7.92 34.33 4.00
2429 6491 1.269958 CTGATCTGGCGGATATGGGA 58.730 55.000 9.22 0.00 34.33 4.37
2430 6492 1.836166 CTGATCTGGCGGATATGGGAT 59.164 52.381 9.22 0.00 34.33 3.85
2434 6496 0.037303 CTGGCGGATATGGGATTGCT 59.963 55.000 0.00 0.00 0.00 3.91
2435 6497 0.036732 TGGCGGATATGGGATTGCTC 59.963 55.000 0.00 0.00 0.00 4.26
2436 6498 1.021390 GGCGGATATGGGATTGCTCG 61.021 60.000 0.00 0.00 0.00 5.03
2437 6499 1.021390 GCGGATATGGGATTGCTCGG 61.021 60.000 0.00 0.00 0.00 4.63
2438 6500 0.608130 CGGATATGGGATTGCTCGGA 59.392 55.000 0.00 0.00 0.00 4.55
2442 6504 1.788229 TATGGGATTGCTCGGACTCA 58.212 50.000 0.00 0.00 0.00 3.41
2443 6505 0.911769 ATGGGATTGCTCGGACTCAA 59.088 50.000 0.00 0.00 0.00 3.02
2446 6508 1.092345 GGATTGCTCGGACTCAAGGC 61.092 60.000 0.00 0.00 0.00 4.35
2447 6509 1.078143 ATTGCTCGGACTCAAGGCC 60.078 57.895 0.00 0.00 0.00 5.19
2448 6510 1.841302 ATTGCTCGGACTCAAGGCCA 61.841 55.000 5.01 0.00 0.00 5.36
2449 6511 2.125350 GCTCGGACTCAAGGCCAG 60.125 66.667 5.01 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.481643 AGTACAGTGCACTAACCCATAAAAT 58.518 36.000 21.20 0.00 0.00 1.82
14 15 6.801718 ATAGTACAGTGCACTAACCCATAA 57.198 37.500 21.20 0.88 32.47 1.90
15 16 6.801718 AATAGTACAGTGCACTAACCCATA 57.198 37.500 21.20 9.71 32.47 2.74
18 19 6.040878 CACTAATAGTACAGTGCACTAACCC 58.959 44.000 21.20 7.92 36.09 4.11
23 24 4.021456 TGCACACTAATAGTACAGTGCACT 60.021 41.667 24.08 15.25 44.96 4.40
29 30 3.118775 TGGGCTGCACACTAATAGTACAG 60.119 47.826 0.00 10.92 0.00 2.74
34 35 2.095853 CGTTTGGGCTGCACACTAATAG 59.904 50.000 2.89 0.00 0.00 1.73
48 49 3.146066 TGTGGAGAAAAGATCGTTTGGG 58.854 45.455 11.50 0.00 0.00 4.12
179 185 2.106511 CCTCCCAACTCCAAGTCAGAAA 59.893 50.000 0.00 0.00 0.00 2.52
270 281 1.332180 CGTTTGTCAATGCTGCAGCG 61.332 55.000 32.11 19.09 45.83 5.18
287 298 1.443872 GTCCTCGCATTGTCGTCGT 60.444 57.895 0.00 0.00 0.00 4.34
288 299 2.497092 CGTCCTCGCATTGTCGTCG 61.497 63.158 0.00 0.00 0.00 5.12
289 300 0.179181 TACGTCCTCGCATTGTCGTC 60.179 55.000 0.00 0.00 41.18 4.20
292 303 1.135489 TGACTACGTCCTCGCATTGTC 60.135 52.381 0.00 0.00 41.18 3.18
320 332 1.964933 GGTAGGTAGGTGCCATCTCTC 59.035 57.143 0.00 0.00 0.00 3.20
335 347 1.676014 CGGAGTGGCAAAAGAGGTAGG 60.676 57.143 0.00 0.00 0.00 3.18
384 396 0.934496 CTTTTGTCCGACGCTGAACA 59.066 50.000 0.00 0.00 0.00 3.18
412 424 3.062639 CAGGAATTTGTACGTAGCAGCTG 59.937 47.826 10.11 10.11 0.00 4.24
417 429 3.522553 AGAGCAGGAATTTGTACGTAGC 58.477 45.455 0.00 0.00 0.00 3.58
473 485 3.441572 CAGATGAATCACCCAACTGGAAC 59.558 47.826 0.00 0.00 37.39 3.62
474 486 3.074390 ACAGATGAATCACCCAACTGGAA 59.926 43.478 0.00 0.00 38.32 3.53
476 488 3.012518 GACAGATGAATCACCCAACTGG 58.987 50.000 0.00 0.00 38.32 4.00
547 574 2.930682 GTTTCGGCTATCAACAGAGGAC 59.069 50.000 0.00 0.00 0.00 3.85
561 588 2.564721 AAAGCCTGCTGGTTTCGGC 61.565 57.895 12.03 0.00 40.55 5.54
574 601 2.105766 AGCAAATGGAGATGGAAAGCC 58.894 47.619 0.00 0.00 0.00 4.35
622 649 5.694910 TGTTTAGCACTGTAGCACTTACTTC 59.305 40.000 5.32 0.00 36.85 3.01
632 659 4.744570 TCCGATTCTGTTTAGCACTGTAG 58.255 43.478 0.00 0.00 0.00 2.74
658 794 1.268352 TGCTTAACCACCACGATTTGC 59.732 47.619 0.00 0.00 0.00 3.68
690 826 1.831580 ATCCTGCTCAGCTTGTTTCC 58.168 50.000 0.00 0.00 0.00 3.13
698 834 0.254178 TTCCTCCAATCCTGCTCAGC 59.746 55.000 0.00 0.00 0.00 4.26
710 846 3.009723 GCATCGACAAGAAATTCCTCCA 58.990 45.455 0.00 0.00 0.00 3.86
749 885 3.414700 CAACGACCAGCCGCTGAC 61.415 66.667 22.35 13.59 32.44 3.51
776 915 2.594592 GGCTGACAACAAGCCCGT 60.595 61.111 2.95 0.00 42.52 5.28
797 936 0.531974 TGACAAGTGTGAGCCGGAAC 60.532 55.000 5.05 0.00 0.00 3.62
802 951 1.202580 AGACAGTGACAAGTGTGAGCC 60.203 52.381 0.00 0.00 40.16 4.70
813 962 7.724305 TTAGGTTTAACAATGAGACAGTGAC 57.276 36.000 6.22 0.00 33.46 3.67
994 1157 1.936547 CTGCTTCGAGCCCATTTCTAC 59.063 52.381 4.73 0.00 41.51 2.59
998 1161 1.303561 TGCTGCTTCGAGCCCATTT 60.304 52.632 0.00 0.00 41.51 2.32
1077 1243 2.179517 CTCGACCGCTCACTCACC 59.820 66.667 0.00 0.00 0.00 4.02
1083 1249 4.400109 GTCACGCTCGACCGCTCA 62.400 66.667 0.00 0.00 0.00 4.26
1119 1285 3.255379 GCGCGCAGGCTGTAGTAC 61.255 66.667 29.10 0.00 36.88 2.73
1219 1385 2.047655 CGCTTTGGTACTGGCGGA 60.048 61.111 0.00 0.00 43.25 5.54
1225 1391 1.374252 CGCTGGTCGCTTTGGTACT 60.374 57.895 0.00 0.00 36.13 2.73
1226 1392 2.388232 CCGCTGGTCGCTTTGGTAC 61.388 63.158 0.00 0.00 36.73 3.34
1250 1416 3.716006 CAACACCAGCGTCGGCAG 61.716 66.667 0.00 0.00 43.41 4.85
1253 1419 2.048597 TAGCAACACCAGCGTCGG 60.049 61.111 0.00 0.00 37.01 4.79
1254 1420 2.716828 CGTAGCAACACCAGCGTCG 61.717 63.158 0.00 0.00 37.01 5.12
1255 1421 2.380410 CCGTAGCAACACCAGCGTC 61.380 63.158 0.00 0.00 37.01 5.19
1256 1422 2.357034 CCGTAGCAACACCAGCGT 60.357 61.111 0.00 0.00 37.01 5.07
1265 1431 2.047274 GAGGCAGCACCGTAGCAA 60.047 61.111 0.00 0.00 46.52 3.91
1357 1523 2.124570 CCTCACAATGCCTCCCGG 60.125 66.667 0.00 0.00 0.00 5.73
1453 1627 3.236618 GACAGGTTGCAACGTCGGC 62.237 63.158 21.24 15.04 0.00 5.54
1454 1628 1.594293 AGACAGGTTGCAACGTCGG 60.594 57.895 21.24 13.86 33.56 4.79
1455 1629 1.564622 CAGACAGGTTGCAACGTCG 59.435 57.895 21.24 17.77 33.56 5.12
1456 1630 1.160329 AGCAGACAGGTTGCAACGTC 61.160 55.000 21.24 22.04 43.92 4.34
1457 1631 1.153168 AGCAGACAGGTTGCAACGT 60.153 52.632 22.67 20.67 43.92 3.99
1458 1632 1.280746 CAGCAGACAGGTTGCAACG 59.719 57.895 22.67 12.75 43.92 4.10
1459 1633 1.532868 CTACAGCAGACAGGTTGCAAC 59.467 52.381 21.59 21.59 43.92 4.17
1460 1634 1.140852 ACTACAGCAGACAGGTTGCAA 59.859 47.619 0.00 0.00 43.92 4.08
1467 1641 3.436015 AGTGTACGTACTACAGCAGACAG 59.564 47.826 25.12 0.00 35.93 3.51
1471 1645 4.153655 TCAAGAGTGTACGTACTACAGCAG 59.846 45.833 25.12 10.75 35.93 4.24
1489 1663 3.074412 GTCGCCTTTCCAGAAATCAAGA 58.926 45.455 0.00 0.00 0.00 3.02
1513 1687 7.081526 ACTCGTACTAGTGATGTTTAACGAT 57.918 36.000 12.22 3.05 37.47 3.73
1529 1703 6.631962 AGAGCTTTTAATTGCTACTCGTACT 58.368 36.000 3.19 0.00 39.91 2.73
1530 1704 6.889019 AGAGCTTTTAATTGCTACTCGTAC 57.111 37.500 3.19 0.00 39.91 3.67
1531 1705 7.148474 CCAAAGAGCTTTTAATTGCTACTCGTA 60.148 37.037 3.19 0.00 39.91 3.43
1532 1706 6.348540 CCAAAGAGCTTTTAATTGCTACTCGT 60.349 38.462 3.19 0.00 39.91 4.18
1533 1707 6.024049 CCAAAGAGCTTTTAATTGCTACTCG 58.976 40.000 3.19 0.00 39.91 4.18
1534 1708 6.914259 ACCAAAGAGCTTTTAATTGCTACTC 58.086 36.000 3.19 0.00 39.91 2.59
1564 1738 7.681065 GCCCGTACTGTATGCATTAAGAAAAAT 60.681 37.037 3.54 0.00 0.00 1.82
1629 1807 6.418819 CAGTTTGTCACATAAAAGAAGCCAAG 59.581 38.462 0.00 0.00 0.00 3.61
1634 1812 8.807581 GGTTTTCAGTTTGTCACATAAAAGAAG 58.192 33.333 0.00 0.00 0.00 2.85
1646 1824 4.241681 TGTTGCAAGGTTTTCAGTTTGTC 58.758 39.130 0.00 0.00 0.00 3.18
1664 2004 4.024725 CAGCAACCCATTTGACATTTGTTG 60.025 41.667 0.00 0.00 37.39 3.33
1665 2005 4.128643 CAGCAACCCATTTGACATTTGTT 58.871 39.130 0.00 0.00 37.39 2.83
1685 2025 3.312146 GGAACAAACCAAAAACCATGCAG 59.688 43.478 0.00 0.00 0.00 4.41
1691 2031 1.292061 GGCGGAACAAACCAAAAACC 58.708 50.000 0.00 0.00 0.00 3.27
1697 2037 3.637229 TCTTAAAATGGCGGAACAAACCA 59.363 39.130 0.00 0.00 37.99 3.67
1698 2038 4.245845 TCTTAAAATGGCGGAACAAACC 57.754 40.909 0.00 0.00 0.00 3.27
1699 2039 6.591313 TTTTCTTAAAATGGCGGAACAAAC 57.409 33.333 0.00 0.00 0.00 2.93
1701 2041 5.755861 CCTTTTTCTTAAAATGGCGGAACAA 59.244 36.000 4.66 0.00 38.39 2.83
1702 2042 5.163395 ACCTTTTTCTTAAAATGGCGGAACA 60.163 36.000 13.87 0.00 44.95 3.18
1703 2043 5.294356 ACCTTTTTCTTAAAATGGCGGAAC 58.706 37.500 13.87 0.00 44.95 3.62
1705 2045 4.021807 GGACCTTTTTCTTAAAATGGCGGA 60.022 41.667 13.87 0.00 44.95 5.54
1706 2046 4.242475 GGACCTTTTTCTTAAAATGGCGG 58.758 43.478 13.87 1.50 44.95 6.13
1707 2047 4.242475 GGGACCTTTTTCTTAAAATGGCG 58.758 43.478 13.87 0.00 44.95 5.69
1728 2068 5.770162 GGATGATCACTTTGTAATAAGGGGG 59.230 44.000 0.00 0.00 0.00 5.40
1729 2069 6.364701 TGGATGATCACTTTGTAATAAGGGG 58.635 40.000 0.00 0.00 0.00 4.79
1730 2070 7.880160 TTGGATGATCACTTTGTAATAAGGG 57.120 36.000 0.00 0.00 0.00 3.95
1735 2075 8.686334 GGTTGTATTGGATGATCACTTTGTAAT 58.314 33.333 0.00 0.00 0.00 1.89
1736 2076 7.667635 TGGTTGTATTGGATGATCACTTTGTAA 59.332 33.333 0.00 0.00 0.00 2.41
1737 2077 7.171653 TGGTTGTATTGGATGATCACTTTGTA 58.828 34.615 0.00 0.00 0.00 2.41
1739 2079 6.513806 TGGTTGTATTGGATGATCACTTTG 57.486 37.500 0.00 0.00 0.00 2.77
1741 2081 5.123820 CGTTGGTTGTATTGGATGATCACTT 59.876 40.000 0.00 0.00 0.00 3.16
1742 2082 4.635765 CGTTGGTTGTATTGGATGATCACT 59.364 41.667 0.00 0.00 0.00 3.41
1743 2083 4.634004 TCGTTGGTTGTATTGGATGATCAC 59.366 41.667 0.00 0.00 0.00 3.06
1744 2084 4.837972 TCGTTGGTTGTATTGGATGATCA 58.162 39.130 0.00 0.00 0.00 2.92
1745 2085 6.147821 CCTATCGTTGGTTGTATTGGATGATC 59.852 42.308 0.00 0.00 0.00 2.92
1746 2086 5.997746 CCTATCGTTGGTTGTATTGGATGAT 59.002 40.000 0.00 0.00 0.00 2.45
1747 2087 5.104693 ACCTATCGTTGGTTGTATTGGATGA 60.105 40.000 0.00 0.00 33.34 2.92
1748 2088 5.007626 CACCTATCGTTGGTTGTATTGGATG 59.992 44.000 0.00 0.00 35.28 3.51
1749 2089 5.123227 CACCTATCGTTGGTTGTATTGGAT 58.877 41.667 0.00 0.00 35.28 3.41
1750 2090 4.509616 CACCTATCGTTGGTTGTATTGGA 58.490 43.478 0.00 0.00 35.28 3.53
1751 2091 3.064820 GCACCTATCGTTGGTTGTATTGG 59.935 47.826 0.00 0.00 35.28 3.16
1752 2092 3.938963 AGCACCTATCGTTGGTTGTATTG 59.061 43.478 0.00 0.00 35.28 1.90
1753 2093 3.938963 CAGCACCTATCGTTGGTTGTATT 59.061 43.478 0.00 0.00 35.28 1.89
1754 2094 3.531538 CAGCACCTATCGTTGGTTGTAT 58.468 45.455 0.00 0.00 35.28 2.29
1755 2095 2.933492 GCAGCACCTATCGTTGGTTGTA 60.933 50.000 0.00 0.00 35.28 2.41
1756 2096 1.808411 CAGCACCTATCGTTGGTTGT 58.192 50.000 0.00 0.00 35.28 3.32
1757 2097 0.447801 GCAGCACCTATCGTTGGTTG 59.552 55.000 0.00 0.00 35.28 3.77
1758 2098 1.019278 CGCAGCACCTATCGTTGGTT 61.019 55.000 0.00 0.00 35.28 3.67
1759 2099 1.447838 CGCAGCACCTATCGTTGGT 60.448 57.895 0.00 0.00 38.53 3.67
1760 2100 2.173669 CCGCAGCACCTATCGTTGG 61.174 63.158 0.00 0.00 0.00 3.77
1761 2101 2.813179 GCCGCAGCACCTATCGTTG 61.813 63.158 0.00 0.00 39.53 4.10
1762 2102 2.511600 GCCGCAGCACCTATCGTT 60.512 61.111 0.00 0.00 39.53 3.85
1763 2103 4.873129 CGCCGCAGCACCTATCGT 62.873 66.667 0.00 0.00 39.83 3.73
1765 2105 3.733344 TTCCGCCGCAGCACCTATC 62.733 63.158 0.00 0.00 39.83 2.08
1766 2106 3.740128 CTTCCGCCGCAGCACCTAT 62.740 63.158 0.00 0.00 39.83 2.57
1767 2107 4.451150 CTTCCGCCGCAGCACCTA 62.451 66.667 0.00 0.00 39.83 3.08
1776 2116 3.386867 GATTGTGCTGCTTCCGCCG 62.387 63.158 0.00 0.00 34.43 6.46
1777 2117 2.334946 TGATTGTGCTGCTTCCGCC 61.335 57.895 0.00 0.00 34.43 6.13
1778 2118 1.154150 GTGATTGTGCTGCTTCCGC 60.154 57.895 0.00 0.00 0.00 5.54
1779 2119 1.133253 CGTGATTGTGCTGCTTCCG 59.867 57.895 0.00 0.00 0.00 4.30
1780 2120 0.166814 GACGTGATTGTGCTGCTTCC 59.833 55.000 0.00 0.00 0.00 3.46
1781 2121 0.166814 GGACGTGATTGTGCTGCTTC 59.833 55.000 0.00 0.00 0.00 3.86
1782 2122 0.534877 TGGACGTGATTGTGCTGCTT 60.535 50.000 0.00 0.00 0.00 3.91
1783 2123 0.534877 TTGGACGTGATTGTGCTGCT 60.535 50.000 0.00 0.00 0.00 4.24
1784 2124 0.310543 TTTGGACGTGATTGTGCTGC 59.689 50.000 0.00 0.00 0.00 5.25
1785 2125 2.772568 TTTTGGACGTGATTGTGCTG 57.227 45.000 0.00 0.00 0.00 4.41
1843 2183 1.460359 GTTTTTGTCGATCCGCCGTTA 59.540 47.619 0.00 0.00 0.00 3.18
1844 2184 0.236449 GTTTTTGTCGATCCGCCGTT 59.764 50.000 0.00 0.00 0.00 4.44
1846 2186 1.225637 CGTTTTTGTCGATCCGCCG 60.226 57.895 0.00 0.00 0.00 6.46
1847 2187 0.179233 GTCGTTTTTGTCGATCCGCC 60.179 55.000 0.00 0.00 39.45 6.13
1848 2188 0.515717 CGTCGTTTTTGTCGATCCGC 60.516 55.000 0.00 0.00 39.45 5.54
1850 2190 1.389106 CTCCGTCGTTTTTGTCGATCC 59.611 52.381 0.00 0.00 39.45 3.36
1851 2191 1.201780 GCTCCGTCGTTTTTGTCGATC 60.202 52.381 0.00 0.00 39.45 3.69
1853 2193 1.216941 GGCTCCGTCGTTTTTGTCGA 61.217 55.000 0.00 0.00 34.91 4.20
1854 2194 1.203313 GGCTCCGTCGTTTTTGTCG 59.797 57.895 0.00 0.00 0.00 4.35
1855 2195 0.511653 GAGGCTCCGTCGTTTTTGTC 59.488 55.000 2.15 0.00 0.00 3.18
1857 2197 1.491563 CGAGGCTCCGTCGTTTTTG 59.508 57.895 9.32 0.00 32.62 2.44
1859 2199 2.737376 GCGAGGCTCCGTCGTTTT 60.737 61.111 9.32 0.00 39.69 2.43
1880 2220 2.235536 GATTTCCGGTGGACGCAACG 62.236 60.000 0.00 0.00 42.52 4.10
1881 2221 1.500396 GATTTCCGGTGGACGCAAC 59.500 57.895 0.00 0.00 42.52 4.17
1882 2222 2.030401 CGATTTCCGGTGGACGCAA 61.030 57.895 0.00 0.00 42.52 4.85
1883 2223 2.433491 CGATTTCCGGTGGACGCA 60.433 61.111 0.00 0.00 42.52 5.24
1884 2224 3.861263 GCGATTTCCGGTGGACGC 61.861 66.667 18.18 18.18 42.52 5.19
1885 2225 3.192922 GGCGATTTCCGGTGGACG 61.193 66.667 0.00 5.43 43.80 4.79
1886 2226 2.822701 GGGCGATTTCCGGTGGAC 60.823 66.667 0.00 0.00 39.04 4.02
1887 2227 4.104183 GGGGCGATTTCCGGTGGA 62.104 66.667 0.00 0.00 39.04 4.02
1912 2252 1.219393 GGAGTCTCGAAGCTTGGGG 59.781 63.158 2.10 1.56 0.00 4.96
1913 2253 1.153745 CGGAGTCTCGAAGCTTGGG 60.154 63.158 2.10 0.00 0.00 4.12
1914 2254 0.243907 TTCGGAGTCTCGAAGCTTGG 59.756 55.000 2.10 1.69 43.12 3.61
1915 2255 3.794690 TTCGGAGTCTCGAAGCTTG 57.205 52.632 2.10 0.00 43.12 4.01
1921 2261 3.812019 GGCGCTTCGGAGTCTCGA 61.812 66.667 7.64 0.31 37.38 4.04
1930 2270 2.510691 ATTGGTACCGGCGCTTCG 60.511 61.111 7.64 2.53 0.00 3.79
1931 2271 1.022451 TTGATTGGTACCGGCGCTTC 61.022 55.000 7.64 0.00 0.00 3.86
1932 2272 1.003112 TTGATTGGTACCGGCGCTT 60.003 52.632 7.64 0.00 0.00 4.68
1934 2274 2.036006 TGTTGATTGGTACCGGCGC 61.036 57.895 7.57 0.00 0.00 6.53
1935 2275 1.641123 GGTGTTGATTGGTACCGGCG 61.641 60.000 7.57 0.00 0.00 6.46
1936 2276 0.322187 AGGTGTTGATTGGTACCGGC 60.322 55.000 7.57 0.00 38.24 6.13
1939 2279 2.871096 TGGAGGTGTTGATTGGTACC 57.129 50.000 4.43 4.43 0.00 3.34
1940 2280 4.015872 TCTTGGAGGTGTTGATTGGTAC 57.984 45.455 0.00 0.00 0.00 3.34
1941 2281 4.506625 CCTTCTTGGAGGTGTTGATTGGTA 60.507 45.833 0.00 0.00 38.35 3.25
1942 2282 3.490348 CTTCTTGGAGGTGTTGATTGGT 58.510 45.455 0.00 0.00 0.00 3.67
1944 2284 2.821969 CCCTTCTTGGAGGTGTTGATTG 59.178 50.000 0.00 0.00 38.35 2.67
1948 2288 1.878102 CGTCCCTTCTTGGAGGTGTTG 60.878 57.143 0.00 0.00 38.35 3.33
1949 2289 0.396811 CGTCCCTTCTTGGAGGTGTT 59.603 55.000 0.00 0.00 38.35 3.32
1951 2291 1.376037 GCGTCCCTTCTTGGAGGTG 60.376 63.158 0.00 0.00 41.34 4.00
1953 2293 2.125512 CGCGTCCCTTCTTGGAGG 60.126 66.667 0.00 0.00 42.01 4.30
1954 2294 1.446272 GTCGCGTCCCTTCTTGGAG 60.446 63.158 5.77 0.00 38.35 3.86
1955 2295 2.654877 GTCGCGTCCCTTCTTGGA 59.345 61.111 5.77 0.00 38.35 3.53
1957 2297 2.087009 GTCGTCGCGTCCCTTCTTG 61.087 63.158 5.77 0.00 0.00 3.02
1958 2298 1.803366 AAGTCGTCGCGTCCCTTCTT 61.803 55.000 5.77 2.27 0.00 2.52
1960 2300 2.087009 CAAGTCGTCGCGTCCCTTC 61.087 63.158 5.77 0.00 0.00 3.46
1961 2301 2.049433 CAAGTCGTCGCGTCCCTT 60.049 61.111 5.77 1.34 0.00 3.95
1963 2303 3.103911 CACAAGTCGTCGCGTCCC 61.104 66.667 5.77 0.00 0.00 4.46
1964 2304 1.485032 AAACACAAGTCGTCGCGTCC 61.485 55.000 5.77 0.00 0.00 4.79
1965 2305 0.381428 CAAACACAAGTCGTCGCGTC 60.381 55.000 5.77 0.00 0.00 5.19
1966 2306 1.079875 ACAAACACAAGTCGTCGCGT 61.080 50.000 5.77 0.00 0.00 6.01
1969 2309 1.267334 CCACACAAACACAAGTCGTCG 60.267 52.381 0.00 0.00 0.00 5.12
1970 2310 1.735571 ACCACACAAACACAAGTCGTC 59.264 47.619 0.00 0.00 0.00 4.20
1971 2311 1.735571 GACCACACAAACACAAGTCGT 59.264 47.619 0.00 0.00 0.00 4.34
1972 2312 1.267334 CGACCACACAAACACAAGTCG 60.267 52.381 0.00 0.00 39.51 4.18
1973 2313 1.531058 GCGACCACACAAACACAAGTC 60.531 52.381 0.00 0.00 0.00 3.01
1975 2315 0.588730 CGCGACCACACAAACACAAG 60.589 55.000 0.00 0.00 0.00 3.16
1976 2316 1.425825 CGCGACCACACAAACACAA 59.574 52.632 0.00 0.00 0.00 3.33
1977 2317 2.465299 CCGCGACCACACAAACACA 61.465 57.895 8.23 0.00 0.00 3.72
1978 2318 2.326550 CCGCGACCACACAAACAC 59.673 61.111 8.23 0.00 0.00 3.32
1979 2319 3.578272 GCCGCGACCACACAAACA 61.578 61.111 8.23 0.00 0.00 2.83
1980 2320 4.659874 CGCCGCGACCACACAAAC 62.660 66.667 8.23 0.00 0.00 2.93
2000 2340 2.985282 TTCAGCCGCCTGCCAAAG 60.985 61.111 0.00 0.00 42.71 2.77
2001 2341 2.985282 CTTCAGCCGCCTGCCAAA 60.985 61.111 0.00 0.00 42.71 3.28
2002 2342 3.790416 AACTTCAGCCGCCTGCCAA 62.790 57.895 0.00 0.00 42.71 4.52
2003 2343 3.790416 AAACTTCAGCCGCCTGCCA 62.790 57.895 0.00 0.00 42.71 4.92
2004 2344 2.982744 GAAACTTCAGCCGCCTGCC 61.983 63.158 0.00 0.00 42.71 4.85
2007 2347 0.962356 CCATGAAACTTCAGCCGCCT 60.962 55.000 0.00 0.00 41.08 5.52
2009 2349 0.109597 CACCATGAAACTTCAGCCGC 60.110 55.000 0.00 0.00 41.08 6.53
2010 2350 0.523072 CCACCATGAAACTTCAGCCG 59.477 55.000 0.00 0.00 41.08 5.52
2011 2351 1.620822 ACCACCATGAAACTTCAGCC 58.379 50.000 0.00 0.00 41.08 4.85
2012 2352 2.887152 AGAACCACCATGAAACTTCAGC 59.113 45.455 0.00 0.00 41.08 4.26
2013 2353 5.163519 ACAAAGAACCACCATGAAACTTCAG 60.164 40.000 0.00 0.00 41.08 3.02
2014 2354 4.709397 ACAAAGAACCACCATGAAACTTCA 59.291 37.500 0.00 0.00 42.14 3.02
2015 2355 5.262588 ACAAAGAACCACCATGAAACTTC 57.737 39.130 0.00 0.00 0.00 3.01
2019 2508 2.621055 CCGACAAAGAACCACCATGAAA 59.379 45.455 0.00 0.00 0.00 2.69
2022 2511 0.240945 GCCGACAAAGAACCACCATG 59.759 55.000 0.00 0.00 0.00 3.66
2023 2512 0.179004 TGCCGACAAAGAACCACCAT 60.179 50.000 0.00 0.00 0.00 3.55
2028 2517 1.166531 AGCAGTGCCGACAAAGAACC 61.167 55.000 12.58 0.00 0.00 3.62
2030 2519 0.884704 GGAGCAGTGCCGACAAAGAA 60.885 55.000 12.58 0.00 0.00 2.52
2037 2526 3.695606 GGACTGGAGCAGTGCCGA 61.696 66.667 12.58 0.00 45.44 5.54
2048 2537 4.838152 CATGGACGCCGGGACTGG 62.838 72.222 2.18 0.00 0.00 4.00
2049 2538 4.838152 CCATGGACGCCGGGACTG 62.838 72.222 5.56 0.00 0.00 3.51
2051 2540 4.832608 GTCCATGGACGCCGGGAC 62.833 72.222 28.52 17.25 41.15 4.46
2059 2548 0.321653 AAGAACGCAGGTCCATGGAC 60.322 55.000 33.14 33.14 43.87 4.02
2060 2549 0.036388 GAAGAACGCAGGTCCATGGA 60.036 55.000 11.44 11.44 0.00 3.41
2061 2550 0.321564 TGAAGAACGCAGGTCCATGG 60.322 55.000 4.97 4.97 0.00 3.66
2062 2551 1.081892 CTGAAGAACGCAGGTCCATG 58.918 55.000 0.00 0.00 0.00 3.66
2063 2552 0.687354 ACTGAAGAACGCAGGTCCAT 59.313 50.000 0.00 0.00 37.69 3.41
2066 2555 1.140816 GACACTGAAGAACGCAGGTC 58.859 55.000 0.00 0.00 37.69 3.85
2067 2556 0.249911 GGACACTGAAGAACGCAGGT 60.250 55.000 0.00 0.00 37.69 4.00
2068 2557 0.249868 TGGACACTGAAGAACGCAGG 60.250 55.000 0.00 0.00 37.69 4.85
2069 2558 1.462283 CATGGACACTGAAGAACGCAG 59.538 52.381 0.00 0.00 39.26 5.18
2070 2559 1.511850 CATGGACACTGAAGAACGCA 58.488 50.000 0.00 0.00 0.00 5.24
2071 2560 0.798776 CCATGGACACTGAAGAACGC 59.201 55.000 5.56 0.00 0.00 4.84
2072 2561 2.069273 GACCATGGACACTGAAGAACG 58.931 52.381 21.47 0.00 0.00 3.95
2073 2562 3.070018 CAGACCATGGACACTGAAGAAC 58.930 50.000 21.47 0.00 32.90 3.01
2074 2563 2.550855 GCAGACCATGGACACTGAAGAA 60.551 50.000 28.08 0.00 32.90 2.52
2075 2564 1.002430 GCAGACCATGGACACTGAAGA 59.998 52.381 28.08 0.00 32.90 2.87
2076 2565 1.002888 AGCAGACCATGGACACTGAAG 59.997 52.381 28.08 12.68 32.90 3.02
2077 2566 1.059098 AGCAGACCATGGACACTGAA 58.941 50.000 28.08 0.00 32.90 3.02
2079 2568 0.675837 CCAGCAGACCATGGACACTG 60.676 60.000 21.47 21.74 39.02 3.66
2080 2569 1.681666 CCAGCAGACCATGGACACT 59.318 57.895 21.47 11.34 39.02 3.55
2081 2570 2.042831 GCCAGCAGACCATGGACAC 61.043 63.158 21.47 8.99 39.02 3.67
2082 2571 2.352422 GCCAGCAGACCATGGACA 59.648 61.111 21.47 0.00 39.02 4.02
2083 2572 2.821366 CGCCAGCAGACCATGGAC 60.821 66.667 21.47 13.40 39.02 4.02
2084 2573 3.315142 GACGCCAGCAGACCATGGA 62.315 63.158 21.47 0.00 39.02 3.41
2085 2574 2.821366 GACGCCAGCAGACCATGG 60.821 66.667 11.19 11.19 39.73 3.66
2086 2575 2.821366 GGACGCCAGCAGACCATG 60.821 66.667 0.00 0.00 0.00 3.66
2139 4830 4.809496 ATGCTGGAAGGGGCGCAG 62.809 66.667 10.83 0.00 35.66 5.18
2142 4833 1.821332 GAAGATGCTGGAAGGGGCG 60.821 63.158 0.00 0.00 0.00 6.13
2143 4834 1.821332 CGAAGATGCTGGAAGGGGC 60.821 63.158 0.00 0.00 0.00 5.80
2144 4835 1.153086 CCGAAGATGCTGGAAGGGG 60.153 63.158 0.00 0.00 0.00 4.79
2168 6230 4.814294 GTAGCCACCAGGACGCCG 62.814 72.222 0.00 0.00 36.89 6.46
2183 6245 2.048597 CGTGTTGCTGGAGGCGTA 60.049 61.111 0.00 0.00 45.43 4.42
2184 6246 4.988598 CCGTGTTGCTGGAGGCGT 62.989 66.667 0.00 0.00 45.43 5.68
2185 6247 4.680237 TCCGTGTTGCTGGAGGCG 62.680 66.667 0.00 0.00 45.43 5.52
2186 6248 2.743928 CTCCGTGTTGCTGGAGGC 60.744 66.667 0.24 0.00 46.55 4.70
2197 6259 1.602377 GGAAGGAAACACAACTCCGTG 59.398 52.381 0.00 0.00 42.81 4.94
2199 6261 0.865769 CGGAAGGAAACACAACTCCG 59.134 55.000 0.00 0.00 36.78 4.63
2213 6275 2.335712 GGCAAACTGGAGCCGGAAG 61.336 63.158 5.05 0.00 41.70 3.46
2214 6276 2.282180 GGCAAACTGGAGCCGGAA 60.282 61.111 5.05 0.00 41.70 4.30
2218 6280 3.365265 CACCGGCAAACTGGAGCC 61.365 66.667 0.00 0.00 46.41 4.70
2219 6281 3.365265 CCACCGGCAAACTGGAGC 61.365 66.667 0.00 0.00 46.41 4.70
2239 6301 0.034059 GATGGTAGGATGGCGACCAG 59.966 60.000 4.90 0.00 46.11 4.00
2240 6302 1.407656 GGATGGTAGGATGGCGACCA 61.408 60.000 1.01 1.01 46.92 4.02
2241 6303 1.371558 GGATGGTAGGATGGCGACC 59.628 63.158 0.00 0.00 0.00 4.79
2242 6304 1.006102 CGGATGGTAGGATGGCGAC 60.006 63.158 0.00 0.00 0.00 5.19
2243 6305 1.456892 ACGGATGGTAGGATGGCGA 60.457 57.895 0.00 0.00 0.00 5.54
2244 6306 1.300931 CACGGATGGTAGGATGGCG 60.301 63.158 0.00 0.00 0.00 5.69
2245 6307 0.249911 GACACGGATGGTAGGATGGC 60.250 60.000 0.00 0.00 0.00 4.40
2246 6308 0.032130 CGACACGGATGGTAGGATGG 59.968 60.000 0.00 0.00 0.00 3.51
2249 6311 0.034767 AGTCGACACGGATGGTAGGA 60.035 55.000 19.50 0.00 0.00 2.94
2251 6313 1.331138 GAGAGTCGACACGGATGGTAG 59.669 57.143 19.50 0.00 0.00 3.18
2252 6314 1.065636 AGAGAGTCGACACGGATGGTA 60.066 52.381 19.50 0.00 0.00 3.25
2253 6315 0.322636 AGAGAGTCGACACGGATGGT 60.323 55.000 19.50 0.00 0.00 3.55
2256 6318 1.658686 GGCAGAGAGTCGACACGGAT 61.659 60.000 19.50 0.00 0.00 4.18
2257 6319 2.333417 GGCAGAGAGTCGACACGGA 61.333 63.158 19.50 0.00 0.00 4.69
2258 6320 2.179517 GGCAGAGAGTCGACACGG 59.820 66.667 19.50 10.30 0.00 4.94
2260 6322 2.574399 GGGGCAGAGAGTCGACAC 59.426 66.667 19.50 12.15 0.00 3.67
2261 6323 3.062466 CGGGGCAGAGAGTCGACA 61.062 66.667 19.50 0.00 0.00 4.35
2262 6324 4.500116 GCGGGGCAGAGAGTCGAC 62.500 72.222 7.70 7.70 0.00 4.20
2263 6325 4.742649 AGCGGGGCAGAGAGTCGA 62.743 66.667 0.00 0.00 0.00 4.20
2264 6326 4.504916 CAGCGGGGCAGAGAGTCG 62.505 72.222 0.00 0.00 0.00 4.18
2265 6327 4.828925 GCAGCGGGGCAGAGAGTC 62.829 72.222 0.00 0.00 0.00 3.36
2273 6335 4.722700 TTGAAGAGGCAGCGGGGC 62.723 66.667 0.00 0.00 43.80 5.80
2274 6336 2.747855 GTTGAAGAGGCAGCGGGG 60.748 66.667 0.00 0.00 0.00 5.73
2277 6339 2.747855 GGGGTTGAAGAGGCAGCG 60.748 66.667 0.00 0.00 0.00 5.18
2278 6340 2.747855 CGGGGTTGAAGAGGCAGC 60.748 66.667 0.00 0.00 0.00 5.25
2279 6341 1.376037 GACGGGGTTGAAGAGGCAG 60.376 63.158 0.00 0.00 0.00 4.85
2280 6342 2.747686 GACGGGGTTGAAGAGGCA 59.252 61.111 0.00 0.00 0.00 4.75
2282 6344 1.003718 GTGGACGGGGTTGAAGAGG 60.004 63.158 0.00 0.00 0.00 3.69
2283 6345 1.003718 GGTGGACGGGGTTGAAGAG 60.004 63.158 0.00 0.00 0.00 2.85
2284 6346 0.178926 TAGGTGGACGGGGTTGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
2287 6349 1.152290 TGTAGGTGGACGGGGTTGA 60.152 57.895 0.00 0.00 0.00 3.18
2289 6351 2.576832 CGTGTAGGTGGACGGGGTT 61.577 63.158 0.00 0.00 31.84 4.11
2290 6352 2.993264 CGTGTAGGTGGACGGGGT 60.993 66.667 0.00 0.00 31.84 4.95
2295 6357 2.047560 GGTGCCGTGTAGGTGGAC 60.048 66.667 0.00 0.00 43.70 4.02
2296 6358 1.485294 ATTGGTGCCGTGTAGGTGGA 61.485 55.000 0.00 0.00 43.70 4.02
2298 6360 0.521291 CAATTGGTGCCGTGTAGGTG 59.479 55.000 0.00 0.00 43.70 4.00
2299 6361 2.941210 CAATTGGTGCCGTGTAGGT 58.059 52.632 0.00 0.00 43.70 3.08
2309 6371 1.339235 CGCGAGCTTTGCAATTGGTG 61.339 55.000 0.00 0.00 0.00 4.17
2310 6372 1.081242 CGCGAGCTTTGCAATTGGT 60.081 52.632 0.00 1.73 0.00 3.67
2312 6374 1.130955 AAACGCGAGCTTTGCAATTG 58.869 45.000 15.93 0.00 0.00 2.32
2313 6375 1.851658 AAAACGCGAGCTTTGCAATT 58.148 40.000 15.93 3.35 0.00 2.32
2314 6376 1.522258 CAAAAACGCGAGCTTTGCAAT 59.478 42.857 15.93 0.00 32.68 3.56
2315 6377 0.919981 CAAAAACGCGAGCTTTGCAA 59.080 45.000 15.93 0.00 32.68 4.08
2316 6378 2.576083 CAAAAACGCGAGCTTTGCA 58.424 47.368 15.93 0.00 32.68 4.08
2318 6380 1.845985 GGCAAAAACGCGAGCTTTG 59.154 52.632 15.93 18.88 39.13 2.77
2319 6381 1.657181 CGGCAAAAACGCGAGCTTT 60.657 52.632 15.93 6.43 0.00 3.51
2320 6382 1.852067 ATCGGCAAAAACGCGAGCTT 61.852 50.000 15.93 0.00 0.00 3.74
2321 6383 2.325082 ATCGGCAAAAACGCGAGCT 61.325 52.632 15.93 0.00 0.00 4.09
2322 6384 2.145905 CATCGGCAAAAACGCGAGC 61.146 57.895 15.93 8.44 0.00 5.03
2323 6385 1.511887 CCATCGGCAAAAACGCGAG 60.512 57.895 15.93 0.00 0.00 5.03
2324 6386 2.558821 CCATCGGCAAAAACGCGA 59.441 55.556 15.93 0.00 0.00 5.87
2347 6409 4.432741 GAAGGAGGGTGGGGCTGC 62.433 72.222 0.00 0.00 0.00 5.25
2348 6410 2.612115 AGAAGGAGGGTGGGGCTG 60.612 66.667 0.00 0.00 0.00 4.85
2349 6411 2.612115 CAGAAGGAGGGTGGGGCT 60.612 66.667 0.00 0.00 0.00 5.19
2350 6412 2.610859 TCAGAAGGAGGGTGGGGC 60.611 66.667 0.00 0.00 0.00 5.80
2351 6413 3.732938 CTCAGAAGGAGGGTGGGG 58.267 66.667 0.00 0.00 40.13 4.96
2358 6420 0.741915 GACCGCTACCTCAGAAGGAG 59.258 60.000 0.00 0.00 46.67 3.69
2359 6421 1.030488 CGACCGCTACCTCAGAAGGA 61.030 60.000 0.00 0.00 46.67 3.36
2361 6423 0.099082 GTCGACCGCTACCTCAGAAG 59.901 60.000 3.51 0.00 0.00 2.85
2362 6424 0.607217 TGTCGACCGCTACCTCAGAA 60.607 55.000 14.12 0.00 0.00 3.02
2363 6425 0.393944 ATGTCGACCGCTACCTCAGA 60.394 55.000 14.12 0.00 0.00 3.27
2369 6431 0.806102 ACATGCATGTCGACCGCTAC 60.806 55.000 26.61 6.45 35.87 3.58
2370 6432 0.108377 AACATGCATGTCGACCGCTA 60.108 50.000 31.45 12.73 40.80 4.26
2383 6445 4.337763 CGAAGATGCAAGAGTAAACATGC 58.662 43.478 0.00 0.00 39.22 4.06
2386 6448 2.411748 CGCGAAGATGCAAGAGTAAACA 59.588 45.455 0.00 0.00 34.15 2.83
2388 6450 2.666508 GACGCGAAGATGCAAGAGTAAA 59.333 45.455 15.93 0.00 34.15 2.01
2389 6451 2.259618 GACGCGAAGATGCAAGAGTAA 58.740 47.619 15.93 0.00 34.15 2.24
2390 6452 1.469251 GGACGCGAAGATGCAAGAGTA 60.469 52.381 15.93 0.00 34.15 2.59
2391 6453 0.737715 GGACGCGAAGATGCAAGAGT 60.738 55.000 15.93 0.00 34.15 3.24
2393 6455 0.737367 CAGGACGCGAAGATGCAAGA 60.737 55.000 15.93 0.00 34.15 3.02
2394 6456 0.737367 TCAGGACGCGAAGATGCAAG 60.737 55.000 15.93 0.00 34.15 4.01
2395 6457 0.108186 ATCAGGACGCGAAGATGCAA 60.108 50.000 15.93 0.00 34.15 4.08
2396 6458 0.528466 GATCAGGACGCGAAGATGCA 60.528 55.000 15.93 0.00 34.15 3.96
2397 6459 0.249238 AGATCAGGACGCGAAGATGC 60.249 55.000 15.93 0.00 0.00 3.91
2398 6460 1.485397 CAGATCAGGACGCGAAGATG 58.515 55.000 15.93 6.04 0.00 2.90
2399 6461 0.387202 CCAGATCAGGACGCGAAGAT 59.613 55.000 15.93 10.14 0.00 2.40
2400 6462 1.809869 CCAGATCAGGACGCGAAGA 59.190 57.895 15.93 4.93 0.00 2.87
2401 6463 1.880340 GCCAGATCAGGACGCGAAG 60.880 63.158 15.93 0.00 0.00 3.79
2402 6464 2.184322 GCCAGATCAGGACGCGAA 59.816 61.111 15.93 0.00 0.00 4.70
2403 6465 4.193334 CGCCAGATCAGGACGCGA 62.193 66.667 15.93 0.00 45.41 5.87
2406 6468 0.891373 ATATCCGCCAGATCAGGACG 59.109 55.000 8.61 10.68 36.81 4.79
2407 6469 1.066573 CCATATCCGCCAGATCAGGAC 60.067 57.143 8.61 0.00 36.81 3.85
2408 6470 1.269958 CCATATCCGCCAGATCAGGA 58.730 55.000 8.61 5.06 36.33 3.86
2409 6471 0.251354 CCCATATCCGCCAGATCAGG 59.749 60.000 0.00 0.00 36.33 3.86
2410 6472 1.269958 TCCCATATCCGCCAGATCAG 58.730 55.000 0.00 0.00 36.33 2.90
2411 6473 1.956869 ATCCCATATCCGCCAGATCA 58.043 50.000 0.00 0.00 36.33 2.92
2412 6474 2.636830 CAATCCCATATCCGCCAGATC 58.363 52.381 0.00 0.00 36.33 2.75
2413 6475 1.340405 GCAATCCCATATCCGCCAGAT 60.340 52.381 0.00 0.00 39.15 2.90
2414 6476 0.036732 GCAATCCCATATCCGCCAGA 59.963 55.000 0.00 0.00 0.00 3.86
2418 6480 1.021390 CCGAGCAATCCCATATCCGC 61.021 60.000 0.00 0.00 0.00 5.54
2419 6481 0.608130 TCCGAGCAATCCCATATCCG 59.392 55.000 0.00 0.00 0.00 4.18
2420 6482 1.625818 AGTCCGAGCAATCCCATATCC 59.374 52.381 0.00 0.00 0.00 2.59
2422 6484 2.329267 TGAGTCCGAGCAATCCCATAT 58.671 47.619 0.00 0.00 0.00 1.78
2423 6485 1.788229 TGAGTCCGAGCAATCCCATA 58.212 50.000 0.00 0.00 0.00 2.74
2424 6486 0.911769 TTGAGTCCGAGCAATCCCAT 59.088 50.000 0.00 0.00 0.00 4.00
2425 6487 0.250234 CTTGAGTCCGAGCAATCCCA 59.750 55.000 0.00 0.00 0.00 4.37
2426 6488 0.462759 CCTTGAGTCCGAGCAATCCC 60.463 60.000 0.00 0.00 0.00 3.85
2428 6490 1.092345 GGCCTTGAGTCCGAGCAATC 61.092 60.000 0.00 0.00 0.00 2.67
2429 6491 1.078143 GGCCTTGAGTCCGAGCAAT 60.078 57.895 0.00 0.00 0.00 3.56
2430 6492 2.347490 GGCCTTGAGTCCGAGCAA 59.653 61.111 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.