Multiple sequence alignment - TraesCS5B01G481200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G481200 chr5B 100.000 5724 0 0 1 5724 653793170 653798893 0.000000e+00 10571
1 TraesCS5B01G481200 chr5B 94.915 531 17 6 1817 2345 440100428 440100950 0.000000e+00 822
2 TraesCS5B01G481200 chr5D 92.050 5006 215 80 483 5393 519421665 519426582 0.000000e+00 6870
3 TraesCS5B01G481200 chr5A 94.056 1716 88 9 1838 3544 645998753 646000463 0.000000e+00 2591
4 TraesCS5B01G481200 chr5A 88.112 1859 134 31 4 1813 645996948 645998768 0.000000e+00 2128
5 TraesCS5B01G481200 chr5A 95.225 1110 40 9 4354 5461 646001350 646002448 0.000000e+00 1744
6 TraesCS5B01G481200 chr5A 91.931 756 44 11 3613 4353 646000460 646001213 0.000000e+00 1042
7 TraesCS5B01G481200 chr4B 94.504 837 32 7 1511 2345 226625305 226624481 0.000000e+00 1279
8 TraesCS5B01G481200 chr4B 94.343 548 18 5 1800 2345 102094286 102093750 0.000000e+00 828
9 TraesCS5B01G481200 chr2B 95.669 531 15 4 1817 2345 272173552 272173028 0.000000e+00 846
10 TraesCS5B01G481200 chr2B 94.925 532 17 6 1817 2345 132705619 132706143 0.000000e+00 824
11 TraesCS5B01G481200 chr2B 94.906 530 17 6 1818 2345 658913034 658912513 0.000000e+00 821
12 TraesCS5B01G481200 chr2B 94.717 530 19 5 1818 2345 63556531 63556009 0.000000e+00 815
13 TraesCS5B01G481200 chr1B 83.436 163 20 5 1210 1370 98745699 98745856 1.660000e-30 145
14 TraesCS5B01G481200 chr1B 90.741 108 10 0 1263 1370 98803749 98803856 1.660000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G481200 chr5B 653793170 653798893 5723 False 10571.00 10571 100.000 1 5724 1 chr5B.!!$F2 5723
1 TraesCS5B01G481200 chr5B 440100428 440100950 522 False 822.00 822 94.915 1817 2345 1 chr5B.!!$F1 528
2 TraesCS5B01G481200 chr5D 519421665 519426582 4917 False 6870.00 6870 92.050 483 5393 1 chr5D.!!$F1 4910
3 TraesCS5B01G481200 chr5A 645996948 646002448 5500 False 1876.25 2591 92.331 4 5461 4 chr5A.!!$F1 5457
4 TraesCS5B01G481200 chr4B 226624481 226625305 824 True 1279.00 1279 94.504 1511 2345 1 chr4B.!!$R2 834
5 TraesCS5B01G481200 chr4B 102093750 102094286 536 True 828.00 828 94.343 1800 2345 1 chr4B.!!$R1 545
6 TraesCS5B01G481200 chr2B 272173028 272173552 524 True 846.00 846 95.669 1817 2345 1 chr2B.!!$R2 528
7 TraesCS5B01G481200 chr2B 132705619 132706143 524 False 824.00 824 94.925 1817 2345 1 chr2B.!!$F1 528
8 TraesCS5B01G481200 chr2B 658912513 658913034 521 True 821.00 821 94.906 1818 2345 1 chr2B.!!$R3 527
9 TraesCS5B01G481200 chr2B 63556009 63556531 522 True 815.00 815 94.717 1818 2345 1 chr2B.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 698 0.037046 CTCCCCCATTTTGTTGCTGC 60.037 55.000 0.00 0.00 0.0 5.25 F
1276 1333 0.313987 GGTTTTGTGCAGCCAGTACC 59.686 55.000 0.00 0.00 31.0 3.34 F
1466 1523 0.475906 GCAGCCATGGATAGGGAAGT 59.524 55.000 18.40 0.00 0.0 3.01 F
2702 2763 1.601759 CTCTGCACACAACCCTGGG 60.602 63.158 12.28 12.28 0.0 4.45 F
3969 4067 1.068954 GCTTGTTTTTCTGCCTCTCGG 60.069 52.381 0.00 0.00 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2690 2751 0.106719 CACTGAACCCAGGGTTGTGT 60.107 55.000 30.03 22.0 46.95 3.72 R
2900 2961 3.812053 GCATGCACCTTCTTGGAGTATAG 59.188 47.826 14.21 0.0 39.71 1.31 R
3969 4067 2.165319 ACGTAGGAGAAACACAAGGC 57.835 50.000 0.00 0.0 0.00 4.35 R
4032 4131 0.457851 CCTCGTAGCTTGTCCTCCTG 59.542 60.000 0.00 0.0 0.00 3.86 R
5661 5910 0.034670 GGCCAGAAGAAGTCCAGCAT 60.035 55.000 0.00 0.0 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.776470 CATATGCATGTCACTGTAATCATGTAA 58.224 33.333 10.16 8.58 39.54 2.41
53 54 6.421377 TGCATGTCACTGTAATCATGTAAC 57.579 37.500 15.18 0.00 39.54 2.50
64 65 9.944376 ACTGTAATCATGTAACTATGTCTTTGT 57.056 29.630 0.00 0.00 0.00 2.83
86 87 5.221823 TGTGTGTCATTCTTCCATAGGAACA 60.222 40.000 0.00 0.00 36.71 3.18
144 146 6.652900 ACATATGGTGGCAAAATAACCAAAAC 59.347 34.615 7.80 0.00 46.59 2.43
219 221 9.758651 AACAACACAATTTCCTATAAGAAAACC 57.241 29.630 0.73 0.00 39.11 3.27
281 284 5.957771 TGGTGCTTCTATCTTTACATCCT 57.042 39.130 0.00 0.00 0.00 3.24
287 290 5.071115 GCTTCTATCTTTACATCCTGGGAGT 59.929 44.000 0.00 0.00 0.00 3.85
293 296 5.500234 TCTTTACATCCTGGGAGTGATTTG 58.500 41.667 0.00 0.00 0.00 2.32
294 297 4.927267 TTACATCCTGGGAGTGATTTGT 57.073 40.909 0.00 0.00 0.00 2.83
295 298 3.356529 ACATCCTGGGAGTGATTTGTC 57.643 47.619 0.00 0.00 0.00 3.18
296 299 2.644299 ACATCCTGGGAGTGATTTGTCA 59.356 45.455 0.00 0.00 0.00 3.58
297 300 3.074390 ACATCCTGGGAGTGATTTGTCAA 59.926 43.478 0.00 0.00 0.00 3.18
298 301 3.140325 TCCTGGGAGTGATTTGTCAAC 57.860 47.619 0.00 0.00 0.00 3.18
299 302 2.441375 TCCTGGGAGTGATTTGTCAACA 59.559 45.455 0.00 0.00 0.00 3.33
300 303 3.074390 TCCTGGGAGTGATTTGTCAACAT 59.926 43.478 0.00 0.00 0.00 2.71
301 304 3.192001 CCTGGGAGTGATTTGTCAACATG 59.808 47.826 0.00 0.00 0.00 3.21
303 306 2.094545 GGGAGTGATTTGTCAACATGGC 60.095 50.000 0.00 0.00 0.00 4.40
304 307 2.557924 GGAGTGATTTGTCAACATGGCA 59.442 45.455 0.00 0.00 0.00 4.92
305 308 3.005684 GGAGTGATTTGTCAACATGGCAA 59.994 43.478 0.00 0.00 40.62 4.52
306 309 4.232221 GAGTGATTTGTCAACATGGCAAG 58.768 43.478 0.00 0.00 43.41 4.01
307 310 3.006110 AGTGATTTGTCAACATGGCAAGG 59.994 43.478 0.00 0.00 43.41 3.61
308 311 3.005684 GTGATTTGTCAACATGGCAAGGA 59.994 43.478 0.00 0.00 43.41 3.36
309 312 3.005684 TGATTTGTCAACATGGCAAGGAC 59.994 43.478 0.00 0.00 43.41 3.85
310 313 2.064434 TTGTCAACATGGCAAGGACA 57.936 45.000 9.00 9.00 37.00 4.02
311 314 2.291209 TGTCAACATGGCAAGGACAT 57.709 45.000 9.00 0.00 33.88 3.06
312 315 2.596346 TGTCAACATGGCAAGGACATT 58.404 42.857 9.00 0.00 33.88 2.71
313 316 2.964464 TGTCAACATGGCAAGGACATTT 59.036 40.909 9.00 0.00 33.88 2.32
314 317 3.387374 TGTCAACATGGCAAGGACATTTT 59.613 39.130 9.00 0.00 33.88 1.82
315 318 4.586421 TGTCAACATGGCAAGGACATTTTA 59.414 37.500 9.00 0.00 33.88 1.52
321 324 7.844493 ACATGGCAAGGACATTTTATGATAT 57.156 32.000 0.00 0.00 0.00 1.63
333 336 8.958119 ACATTTTATGATATACGTGGAAGTGT 57.042 30.769 0.00 0.00 0.00 3.55
350 353 1.108776 TGTCTATACCACCCAGACGC 58.891 55.000 0.00 0.00 41.29 5.19
360 363 4.056125 CCAGACGCTCCGCAGACA 62.056 66.667 0.00 0.00 0.00 3.41
364 367 0.737715 AGACGCTCCGCAGACATTTC 60.738 55.000 0.00 0.00 0.00 2.17
403 406 9.406828 GATTTCTGAATAAACCACAAAACTACC 57.593 33.333 0.00 0.00 0.00 3.18
410 413 1.232119 CCACAAAACTACCGGTGTCC 58.768 55.000 19.93 0.00 0.00 4.02
419 422 4.354893 ACTACCGGTGTCCATTAAAACA 57.645 40.909 19.93 0.00 0.00 2.83
449 452 9.554724 TTGTTGATTTGAAATATAACGAAGAGC 57.445 29.630 10.78 0.00 0.00 4.09
452 455 6.262273 TGATTTGAAATATAACGAAGAGCCCC 59.738 38.462 0.00 0.00 0.00 5.80
459 462 2.358322 AACGAAGAGCCCCTTTTCAA 57.642 45.000 0.00 0.00 34.68 2.69
465 468 3.372440 AGAGCCCCTTTTCAATGGTAG 57.628 47.619 0.00 0.00 0.00 3.18
470 473 4.017499 AGCCCCTTTTCAATGGTAGTATGT 60.017 41.667 0.00 0.00 0.00 2.29
517 520 2.217847 ACATCGACACGACGAAAACAAG 59.782 45.455 0.00 0.00 45.16 3.16
518 521 0.573521 TCGACACGACGAAAACAAGC 59.426 50.000 0.00 0.00 39.34 4.01
586 589 6.137415 CGAAAGAATAAAACGGCTTACACAA 58.863 36.000 0.00 0.00 0.00 3.33
685 691 3.519107 ACCTATTTTGCTCCCCCATTTTG 59.481 43.478 0.00 0.00 0.00 2.44
692 698 0.037046 CTCCCCCATTTTGTTGCTGC 60.037 55.000 0.00 0.00 0.00 5.25
774 780 4.143333 GCAACCTAGCGGGCGAGA 62.143 66.667 2.17 0.00 39.10 4.04
775 781 2.105128 CAACCTAGCGGGCGAGAG 59.895 66.667 2.17 0.00 39.10 3.20
776 782 2.044252 AACCTAGCGGGCGAGAGA 60.044 61.111 2.17 0.00 39.10 3.10
777 783 2.122167 AACCTAGCGGGCGAGAGAG 61.122 63.158 2.17 0.00 39.10 3.20
897 922 1.219393 GCCTTTCCACCTCTCCTCG 59.781 63.158 0.00 0.00 0.00 4.63
1047 1096 0.547712 TCTCCCCTTCCAGGAACCTG 60.548 60.000 13.32 13.32 37.67 4.00
1105 1154 4.193334 GGCGGCGCCTGGATTTTC 62.193 66.667 41.44 13.65 46.69 2.29
1111 1160 1.512694 CGCCTGGATTTTCCTTGGC 59.487 57.895 16.01 16.01 45.96 4.52
1123 1172 0.675633 TCCTTGGCTTCTTTGCTTGC 59.324 50.000 0.00 0.00 0.00 4.01
1250 1307 2.429478 TGGTGATGTGATTGCTCTGTG 58.571 47.619 0.00 0.00 0.00 3.66
1276 1333 0.313987 GGTTTTGTGCAGCCAGTACC 59.686 55.000 0.00 0.00 31.00 3.34
1423 1480 4.142513 GGCTGATGTGATTTTCCTCTGTTC 60.143 45.833 0.00 0.00 0.00 3.18
1466 1523 0.475906 GCAGCCATGGATAGGGAAGT 59.524 55.000 18.40 0.00 0.00 3.01
1467 1524 1.699634 GCAGCCATGGATAGGGAAGTA 59.300 52.381 18.40 0.00 0.00 2.24
1468 1525 2.551071 GCAGCCATGGATAGGGAAGTAC 60.551 54.545 18.40 0.00 0.00 2.73
1469 1526 2.705658 CAGCCATGGATAGGGAAGTACA 59.294 50.000 18.40 0.00 0.00 2.90
1480 1537 3.384168 AGGGAAGTACATACATGGCTGA 58.616 45.455 0.00 0.00 0.00 4.26
1594 1651 6.255215 ACACTCTGTTTTCGTTTTGTACATG 58.745 36.000 0.00 0.00 0.00 3.21
1669 1727 5.050499 CGATAGTGTTGATCAATCCTTCTGC 60.050 44.000 12.12 0.00 0.00 4.26
1728 1786 4.908601 TCTTGACTGACATATGGTGGTT 57.091 40.909 7.80 0.00 0.00 3.67
1940 1999 9.440773 AAATGCTGTATATGAACATCGACATAT 57.559 29.630 10.16 10.16 40.96 1.78
1941 2000 7.816945 TGCTGTATATGAACATCGACATATG 57.183 36.000 13.65 0.00 39.20 1.78
1988 2047 5.491070 TGACATTATCAACCAGAGAGTTGG 58.509 41.667 4.71 0.00 45.81 3.77
2140 2199 0.475906 AGGGCATGCTTAGACCATCC 59.524 55.000 18.92 6.69 36.27 3.51
2224 2285 5.608437 TCTCACATATTAGCCTGAGGGATTT 59.392 40.000 0.00 0.00 32.52 2.17
2246 2307 6.902771 TTACTATCTTCAGTGAGGCTATCC 57.097 41.667 0.00 0.00 0.00 2.59
2278 2339 6.969828 TTTGTTTAAATGGTGGTGTTTGAC 57.030 33.333 0.00 0.00 0.00 3.18
2379 2440 8.886719 CCATCAGCATGTTGTATGTATATTAGG 58.113 37.037 9.54 0.00 34.05 2.69
2380 2441 7.905604 TCAGCATGTTGTATGTATATTAGGC 57.094 36.000 9.54 0.00 37.40 3.93
2440 2501 5.514274 TTGAGAAAGGAATGGTTTGTGTC 57.486 39.130 0.00 0.00 0.00 3.67
2487 2548 3.815401 CGAATATGTTGGATCTGGTTCCC 59.185 47.826 0.00 0.00 34.67 3.97
2633 2694 9.425248 TCAATAGCCTATCCATTTCTTTTGATT 57.575 29.630 0.00 0.00 0.00 2.57
2690 2751 1.891919 GCGGGTGTCAAACTCTGCA 60.892 57.895 0.00 0.00 33.76 4.41
2702 2763 1.601759 CTCTGCACACAACCCTGGG 60.602 63.158 12.28 12.28 0.00 4.45
2950 3011 6.772716 CACTGTGGGAGTATTAGCCATTATTT 59.227 38.462 0.00 0.00 31.73 1.40
3278 3346 4.111577 AGGTCCCAGTTGATTCTTATCCA 58.888 43.478 0.00 0.00 0.00 3.41
3359 3427 5.067674 CCATTTTCGATCCCTTTGCTGATAA 59.932 40.000 0.00 0.00 0.00 1.75
3361 3429 5.818136 TTTCGATCCCTTTGCTGATAAAG 57.182 39.130 0.00 0.00 37.40 1.85
3490 3559 4.604156 GAAAGGGTTCCATCAAAGATCCT 58.396 43.478 0.00 0.00 0.00 3.24
3531 3600 2.173519 CAATGTTTGATCTGCACCCCT 58.826 47.619 0.00 0.00 0.00 4.79
3533 3602 3.737559 ATGTTTGATCTGCACCCCTTA 57.262 42.857 0.00 0.00 0.00 2.69
3535 3604 3.420893 TGTTTGATCTGCACCCCTTAAG 58.579 45.455 0.00 0.00 0.00 1.85
3536 3605 3.181434 TGTTTGATCTGCACCCCTTAAGT 60.181 43.478 0.97 0.00 0.00 2.24
3566 3637 9.424319 CTTACTAGTGCTTCTTCAGTTATTTGA 57.576 33.333 5.39 0.00 0.00 2.69
3578 3649 9.816354 TCTTCAGTTATTTGATCATCATTACGA 57.184 29.630 0.00 0.00 0.00 3.43
3581 3652 8.817100 TCAGTTATTTGATCATCATTACGACAC 58.183 33.333 0.00 0.00 0.00 3.67
3582 3653 8.603181 CAGTTATTTGATCATCATTACGACACA 58.397 33.333 0.00 0.00 0.00 3.72
3594 3668 9.191995 CATCATTACGACACATAGTTATAGCAA 57.808 33.333 0.00 0.00 0.00 3.91
3847 3945 9.146984 TCATGATAACTTTACTTTTACACCGAG 57.853 33.333 0.00 0.00 0.00 4.63
3882 3980 5.086104 TCTATTCTGTCCAGTTTACCTGC 57.914 43.478 0.00 0.00 40.06 4.85
3954 4052 3.832527 ACCTGTAGTTTCCATTGCTTGT 58.167 40.909 0.00 0.00 0.00 3.16
3968 4066 1.603802 TGCTTGTTTTTCTGCCTCTCG 59.396 47.619 0.00 0.00 0.00 4.04
3969 4067 1.068954 GCTTGTTTTTCTGCCTCTCGG 60.069 52.381 0.00 0.00 0.00 4.63
3982 4080 1.433534 CTCTCGGCCTTGTGTTTCTC 58.566 55.000 0.00 0.00 0.00 2.87
3997 4095 4.621886 GTGTTTCTCCTACGTTGCTAAGAG 59.378 45.833 0.00 0.00 0.00 2.85
4012 4110 8.653338 CGTTGCTAAGAGCTTAAGTTTTACATA 58.347 33.333 4.02 0.00 42.97 2.29
4076 4175 1.608542 CCAGGCTATGAGCATCTGAGC 60.609 57.143 0.21 0.00 44.75 4.26
4160 4259 5.426504 AGACATGCACAGGAAATTCTAGAG 58.573 41.667 0.00 0.00 0.00 2.43
4237 4343 5.819991 TCTGGAGAAAGCCAATGAAATACT 58.180 37.500 0.00 0.00 37.52 2.12
4330 4438 7.250569 AGGAATCACGTATAAAATGTTGCTTG 58.749 34.615 0.00 0.00 0.00 4.01
4393 4637 9.930693 GGATTATTACCGTTATTGATCTCTCTT 57.069 33.333 0.00 0.00 0.00 2.85
4509 4753 2.555325 CTGCTTGCTTGTCCAAGAATGA 59.445 45.455 11.12 0.00 43.79 2.57
4510 4754 3.159472 TGCTTGCTTGTCCAAGAATGAT 58.841 40.909 11.12 0.00 43.79 2.45
4690 4934 1.648467 GCGTCTCCCCATTCAGCAAC 61.648 60.000 0.00 0.00 0.00 4.17
4899 5143 2.447630 TCCTGCGGACAAGGAGAAA 58.552 52.632 0.00 0.00 0.00 2.52
4911 5155 1.072505 GGAGAAACCGCTGGGACAA 59.927 57.895 0.00 0.00 38.70 3.18
4924 5168 3.197983 GCTGGGACAATGGAAGTAGTAGT 59.802 47.826 0.00 0.00 38.70 2.73
4925 5169 4.759782 CTGGGACAATGGAAGTAGTAGTG 58.240 47.826 0.00 0.00 38.70 2.74
4934 5178 1.481363 GAAGTAGTAGTGGTCCTGGGC 59.519 57.143 0.00 0.00 0.00 5.36
4936 5180 1.002533 TAGTAGTGGTCCTGGGCCC 59.997 63.158 17.59 17.59 0.00 5.80
5040 5285 3.070018 GTGCTATGATGGTAGGTGATGC 58.930 50.000 0.00 0.00 0.00 3.91
5042 5287 2.932622 GCTATGATGGTAGGTGATGCCG 60.933 54.545 0.00 0.00 43.70 5.69
5092 5337 6.006449 AGTATGTGAGCTTTCATGTTTTCCT 58.994 36.000 12.70 0.00 0.00 3.36
5237 5483 2.663196 GGTTCAGACCGTGGAGGG 59.337 66.667 0.00 0.00 46.96 4.30
5244 5490 0.903454 AGACCGTGGAGGGTTCGAAT 60.903 55.000 0.00 0.00 46.96 3.34
5316 5565 9.959749 TCTTTGTGGTTTATATTGTTGAACTTC 57.040 29.630 0.00 0.00 0.00 3.01
5317 5566 9.743057 CTTTGTGGTTTATATTGTTGAACTTCA 57.257 29.630 0.00 0.00 0.00 3.02
5344 5593 4.337555 TGAATTTGTGGCAATTTTGGGTTG 59.662 37.500 0.00 0.00 0.00 3.77
5361 5610 1.522258 GTTGAGGCATGTTTGTTTGCG 59.478 47.619 0.00 0.00 39.78 4.85
5374 5623 0.521291 GTTTGCGTCTGCTTGGCATA 59.479 50.000 0.00 0.00 43.34 3.14
5377 5626 0.734309 TGCGTCTGCTTGGCATAATG 59.266 50.000 0.00 0.00 43.34 1.90
5387 5636 1.927487 TGGCATAATGGATGGGATGC 58.073 50.000 0.00 0.00 43.19 3.91
5396 5645 2.833582 ATGGGATGCTGCTGCTGC 60.834 61.111 22.51 22.51 40.48 5.25
5397 5646 3.360423 ATGGGATGCTGCTGCTGCT 62.360 57.895 27.67 15.76 40.48 4.24
5398 5647 3.518998 GGGATGCTGCTGCTGCTG 61.519 66.667 27.67 16.73 40.48 4.41
5438 5687 3.378959 CGTTTACCGTGGTAATTCTGC 57.621 47.619 12.04 1.47 39.87 4.26
5448 5697 6.600032 ACCGTGGTAATTCTGCATTATTGTTA 59.400 34.615 0.00 0.00 29.70 2.41
5449 5698 7.284489 ACCGTGGTAATTCTGCATTATTGTTAT 59.716 33.333 0.00 0.00 29.70 1.89
5450 5699 8.134895 CCGTGGTAATTCTGCATTATTGTTATT 58.865 33.333 0.00 0.00 29.70 1.40
5451 5700 9.515020 CGTGGTAATTCTGCATTATTGTTATTT 57.485 29.630 0.00 0.00 29.70 1.40
5476 5725 8.208718 TGTAGATACAAATGTGGTAATTCTGC 57.791 34.615 0.00 0.00 32.40 4.26
5477 5726 7.826744 TGTAGATACAAATGTGGTAATTCTGCA 59.173 33.333 0.00 0.00 32.40 4.41
5478 5727 7.088589 AGATACAAATGTGGTAATTCTGCAC 57.911 36.000 0.00 0.00 0.00 4.57
5479 5728 6.886459 AGATACAAATGTGGTAATTCTGCACT 59.114 34.615 0.00 0.00 0.00 4.40
5480 5729 8.046708 AGATACAAATGTGGTAATTCTGCACTA 58.953 33.333 0.00 0.00 0.00 2.74
5481 5730 8.752005 ATACAAATGTGGTAATTCTGCACTAT 57.248 30.769 0.00 0.00 0.00 2.12
5482 5731 7.466746 ACAAATGTGGTAATTCTGCACTATT 57.533 32.000 0.00 0.00 0.00 1.73
5483 5732 7.315142 ACAAATGTGGTAATTCTGCACTATTG 58.685 34.615 0.00 0.00 0.00 1.90
5484 5733 7.039784 ACAAATGTGGTAATTCTGCACTATTGT 60.040 33.333 0.00 0.00 0.00 2.71
5485 5734 7.466746 AATGTGGTAATTCTGCACTATTGTT 57.533 32.000 0.00 0.00 0.00 2.83
5493 5742 5.843673 TTCTGCACTATTGTTGTTTGGAA 57.156 34.783 0.00 0.00 0.00 3.53
5500 5749 7.023575 GCACTATTGTTGTTTGGAAGATACAG 58.976 38.462 0.00 0.00 0.00 2.74
5501 5750 7.094805 GCACTATTGTTGTTTGGAAGATACAGA 60.095 37.037 0.00 0.00 0.00 3.41
5502 5751 8.950210 CACTATTGTTGTTTGGAAGATACAGAT 58.050 33.333 0.00 0.00 0.00 2.90
5503 5752 8.950210 ACTATTGTTGTTTGGAAGATACAGATG 58.050 33.333 0.00 0.00 0.00 2.90
5504 5753 5.627499 TGTTGTTTGGAAGATACAGATGC 57.373 39.130 0.00 0.00 0.00 3.91
5505 5754 5.069318 TGTTGTTTGGAAGATACAGATGCA 58.931 37.500 0.00 0.00 0.00 3.96
5506 5755 5.711506 TGTTGTTTGGAAGATACAGATGCAT 59.288 36.000 0.00 0.00 0.00 3.96
5507 5756 6.883756 TGTTGTTTGGAAGATACAGATGCATA 59.116 34.615 0.00 0.00 0.00 3.14
5508 5757 7.557358 TGTTGTTTGGAAGATACAGATGCATAT 59.443 33.333 0.00 0.00 0.00 1.78
5509 5758 9.056005 GTTGTTTGGAAGATACAGATGCATATA 57.944 33.333 0.00 0.00 0.00 0.86
5510 5759 9.797642 TTGTTTGGAAGATACAGATGCATATAT 57.202 29.630 0.00 0.00 0.00 0.86
5511 5760 9.223099 TGTTTGGAAGATACAGATGCATATATG 57.777 33.333 8.45 8.45 0.00 1.78
5512 5761 9.224267 GTTTGGAAGATACAGATGCATATATGT 57.776 33.333 14.14 14.10 41.34 2.29
5513 5762 8.782339 TTGGAAGATACAGATGCATATATGTG 57.218 34.615 17.51 6.99 39.01 3.21
5514 5763 6.820152 TGGAAGATACAGATGCATATATGTGC 59.180 38.462 16.82 16.82 39.01 4.57
5533 5782 2.613691 GCAGGAAAATGCATTCAGTGG 58.386 47.619 13.38 4.32 45.77 4.00
5534 5783 2.231964 GCAGGAAAATGCATTCAGTGGA 59.768 45.455 13.38 0.00 45.77 4.02
5535 5784 3.306225 GCAGGAAAATGCATTCAGTGGAA 60.306 43.478 13.38 0.00 45.77 3.53
5536 5785 4.800249 GCAGGAAAATGCATTCAGTGGAAA 60.800 41.667 13.38 0.00 45.77 3.13
5537 5786 5.299148 CAGGAAAATGCATTCAGTGGAAAA 58.701 37.500 13.38 0.00 36.43 2.29
5538 5787 5.759273 CAGGAAAATGCATTCAGTGGAAAAA 59.241 36.000 13.38 0.00 36.43 1.94
5539 5788 6.428771 CAGGAAAATGCATTCAGTGGAAAAAT 59.571 34.615 13.38 0.00 36.43 1.82
5540 5789 7.603404 CAGGAAAATGCATTCAGTGGAAAAATA 59.397 33.333 13.38 0.00 36.43 1.40
5541 5790 8.323567 AGGAAAATGCATTCAGTGGAAAAATAT 58.676 29.630 13.38 0.00 36.43 1.28
5542 5791 8.606602 GGAAAATGCATTCAGTGGAAAAATATC 58.393 33.333 13.38 0.00 36.43 1.63
5543 5792 9.153721 GAAAATGCATTCAGTGGAAAAATATCA 57.846 29.630 13.38 0.00 36.43 2.15
5544 5793 8.712285 AAATGCATTCAGTGGAAAAATATCAG 57.288 30.769 13.38 0.00 36.43 2.90
5545 5794 5.653507 TGCATTCAGTGGAAAAATATCAGC 58.346 37.500 0.00 0.00 36.43 4.26
5546 5795 5.045872 GCATTCAGTGGAAAAATATCAGCC 58.954 41.667 0.00 0.00 36.43 4.85
5547 5796 5.163478 GCATTCAGTGGAAAAATATCAGCCT 60.163 40.000 0.00 0.00 36.43 4.58
5548 5797 6.039717 GCATTCAGTGGAAAAATATCAGCCTA 59.960 38.462 0.00 0.00 36.43 3.93
5549 5798 7.416664 GCATTCAGTGGAAAAATATCAGCCTAA 60.417 37.037 0.00 0.00 36.43 2.69
5550 5799 7.630242 TTCAGTGGAAAAATATCAGCCTAAG 57.370 36.000 0.00 0.00 0.00 2.18
5551 5800 6.957631 TCAGTGGAAAAATATCAGCCTAAGA 58.042 36.000 0.00 0.00 0.00 2.10
5552 5801 7.402054 TCAGTGGAAAAATATCAGCCTAAGAA 58.598 34.615 0.00 0.00 0.00 2.52
5553 5802 8.055181 TCAGTGGAAAAATATCAGCCTAAGAAT 58.945 33.333 0.00 0.00 0.00 2.40
5554 5803 8.689972 CAGTGGAAAAATATCAGCCTAAGAATT 58.310 33.333 0.00 0.00 0.00 2.17
5555 5804 9.259832 AGTGGAAAAATATCAGCCTAAGAATTT 57.740 29.630 0.00 0.00 0.00 1.82
5556 5805 9.875691 GTGGAAAAATATCAGCCTAAGAATTTT 57.124 29.630 0.00 0.00 0.00 1.82
5565 5814 8.767478 ATCAGCCTAAGAATTTTCAAACATTG 57.233 30.769 0.00 0.00 0.00 2.82
5566 5815 7.153985 TCAGCCTAAGAATTTTCAAACATTGG 58.846 34.615 0.00 0.00 0.00 3.16
5567 5816 7.015098 TCAGCCTAAGAATTTTCAAACATTGGA 59.985 33.333 0.00 0.00 0.00 3.53
5568 5817 7.116805 CAGCCTAAGAATTTTCAAACATTGGAC 59.883 37.037 0.00 0.00 0.00 4.02
5569 5818 7.015584 AGCCTAAGAATTTTCAAACATTGGACT 59.984 33.333 0.00 0.00 0.00 3.85
5570 5819 8.303876 GCCTAAGAATTTTCAAACATTGGACTA 58.696 33.333 0.00 0.00 0.00 2.59
5574 5823 9.883142 AAGAATTTTCAAACATTGGACTAAACA 57.117 25.926 0.00 0.00 0.00 2.83
5575 5824 9.883142 AGAATTTTCAAACATTGGACTAAACAA 57.117 25.926 0.00 0.00 0.00 2.83
5577 5826 9.883142 AATTTTCAAACATTGGACTAAACAAGA 57.117 25.926 0.00 0.00 0.00 3.02
5579 5828 9.528018 TTTTCAAACATTGGACTAAACAAGATC 57.472 29.630 0.00 0.00 0.00 2.75
5580 5829 8.463930 TTCAAACATTGGACTAAACAAGATCT 57.536 30.769 0.00 0.00 0.00 2.75
5581 5830 9.567776 TTCAAACATTGGACTAAACAAGATCTA 57.432 29.630 0.00 0.00 0.00 1.98
5582 5831 9.219603 TCAAACATTGGACTAAACAAGATCTAG 57.780 33.333 0.00 0.00 0.00 2.43
5583 5832 7.617041 AACATTGGACTAAACAAGATCTAGC 57.383 36.000 0.00 0.00 0.00 3.42
5584 5833 6.951971 ACATTGGACTAAACAAGATCTAGCT 58.048 36.000 0.00 0.00 0.00 3.32
5585 5834 7.398024 ACATTGGACTAAACAAGATCTAGCTT 58.602 34.615 0.00 0.00 0.00 3.74
5586 5835 7.550906 ACATTGGACTAAACAAGATCTAGCTTC 59.449 37.037 0.00 0.00 0.00 3.86
5587 5836 5.651530 TGGACTAAACAAGATCTAGCTTCG 58.348 41.667 0.00 0.00 0.00 3.79
5588 5837 5.185249 TGGACTAAACAAGATCTAGCTTCGT 59.815 40.000 0.00 0.00 0.00 3.85
5589 5838 6.376299 TGGACTAAACAAGATCTAGCTTCGTA 59.624 38.462 0.00 0.00 0.00 3.43
5590 5839 6.692249 GGACTAAACAAGATCTAGCTTCGTAC 59.308 42.308 0.00 0.00 0.00 3.67
5591 5840 7.393841 ACTAAACAAGATCTAGCTTCGTACT 57.606 36.000 0.00 0.00 0.00 2.73
5592 5841 7.828712 ACTAAACAAGATCTAGCTTCGTACTT 58.171 34.615 0.00 0.00 0.00 2.24
5593 5842 6.952935 AAACAAGATCTAGCTTCGTACTTG 57.047 37.500 0.00 14.23 39.02 3.16
5594 5843 4.425520 ACAAGATCTAGCTTCGTACTTGC 58.574 43.478 15.13 0.00 37.38 4.01
5595 5844 4.158764 ACAAGATCTAGCTTCGTACTTGCT 59.841 41.667 15.13 8.68 37.38 3.91
5596 5845 4.300189 AGATCTAGCTTCGTACTTGCTG 57.700 45.455 12.33 5.23 37.62 4.41
5597 5846 2.941453 TCTAGCTTCGTACTTGCTGG 57.059 50.000 12.33 10.16 37.62 4.85
5598 5847 2.443416 TCTAGCTTCGTACTTGCTGGA 58.557 47.619 11.45 11.45 40.92 3.86
5599 5848 2.423892 TCTAGCTTCGTACTTGCTGGAG 59.576 50.000 11.45 5.03 38.92 3.86
5600 5849 0.969894 AGCTTCGTACTTGCTGGAGT 59.030 50.000 3.85 0.00 35.54 3.85
5601 5850 1.071605 GCTTCGTACTTGCTGGAGTG 58.928 55.000 0.00 0.00 0.00 3.51
5602 5851 1.714794 CTTCGTACTTGCTGGAGTGG 58.285 55.000 0.00 0.00 0.00 4.00
5603 5852 0.320421 TTCGTACTTGCTGGAGTGGC 60.320 55.000 0.00 0.00 0.00 5.01
5604 5853 2.094659 CGTACTTGCTGGAGTGGCG 61.095 63.158 0.00 0.00 0.00 5.69
5605 5854 1.004918 GTACTTGCTGGAGTGGCGT 60.005 57.895 0.00 0.00 0.00 5.68
5606 5855 0.602905 GTACTTGCTGGAGTGGCGTT 60.603 55.000 0.00 0.00 0.00 4.84
5607 5856 0.602638 TACTTGCTGGAGTGGCGTTG 60.603 55.000 0.00 0.00 0.00 4.10
5608 5857 2.594303 TTGCTGGAGTGGCGTTGG 60.594 61.111 0.00 0.00 0.00 3.77
5619 5868 2.125952 GCGTTGGCCAGCCATTTC 60.126 61.111 13.10 5.66 46.64 2.17
5620 5869 2.573340 CGTTGGCCAGCCATTTCC 59.427 61.111 13.10 0.41 46.64 3.13
5621 5870 2.981302 GTTGGCCAGCCATTTCCC 59.019 61.111 13.10 0.00 46.64 3.97
5622 5871 2.284552 TTGGCCAGCCATTTCCCC 60.285 61.111 13.10 0.00 46.64 4.81
5623 5872 3.922116 TTGGCCAGCCATTTCCCCC 62.922 63.158 13.10 0.00 46.64 5.40
5624 5873 4.397010 GGCCAGCCATTTCCCCCA 62.397 66.667 3.12 0.00 35.81 4.96
5625 5874 2.761213 GCCAGCCATTTCCCCCAG 60.761 66.667 0.00 0.00 0.00 4.45
5626 5875 2.761213 CCAGCCATTTCCCCCAGC 60.761 66.667 0.00 0.00 0.00 4.85
5627 5876 2.361771 CAGCCATTTCCCCCAGCT 59.638 61.111 0.00 0.00 0.00 4.24
5628 5877 1.305549 CAGCCATTTCCCCCAGCTT 60.306 57.895 0.00 0.00 0.00 3.74
5629 5878 1.305549 AGCCATTTCCCCCAGCTTG 60.306 57.895 0.00 0.00 0.00 4.01
5630 5879 1.305213 GCCATTTCCCCCAGCTTGA 60.305 57.895 0.00 0.00 0.00 3.02
5631 5880 1.325476 GCCATTTCCCCCAGCTTGAG 61.325 60.000 0.00 0.00 0.00 3.02
5632 5881 1.325476 CCATTTCCCCCAGCTTGAGC 61.325 60.000 0.00 0.00 42.49 4.26
5646 5895 3.569548 GCTTGAGCTTTACTTTTCCTGC 58.430 45.455 0.00 0.00 38.21 4.85
5647 5896 3.814945 CTTGAGCTTTACTTTTCCTGCG 58.185 45.455 0.00 0.00 0.00 5.18
5648 5897 3.120321 TGAGCTTTACTTTTCCTGCGA 57.880 42.857 0.00 0.00 0.00 5.10
5649 5898 2.806244 TGAGCTTTACTTTTCCTGCGAC 59.194 45.455 0.00 0.00 0.00 5.19
5650 5899 2.152016 AGCTTTACTTTTCCTGCGACC 58.848 47.619 0.00 0.00 0.00 4.79
5651 5900 1.877443 GCTTTACTTTTCCTGCGACCA 59.123 47.619 0.00 0.00 0.00 4.02
5652 5901 2.488153 GCTTTACTTTTCCTGCGACCAT 59.512 45.455 0.00 0.00 0.00 3.55
5653 5902 3.670627 GCTTTACTTTTCCTGCGACCATG 60.671 47.826 0.00 0.00 0.00 3.66
5654 5903 3.410631 TTACTTTTCCTGCGACCATGA 57.589 42.857 0.00 0.00 0.00 3.07
5655 5904 2.270352 ACTTTTCCTGCGACCATGAA 57.730 45.000 0.00 0.00 0.00 2.57
5656 5905 2.154462 ACTTTTCCTGCGACCATGAAG 58.846 47.619 0.00 0.00 29.32 3.02
5657 5906 1.470098 CTTTTCCTGCGACCATGAAGG 59.530 52.381 0.00 0.00 45.67 3.46
5668 5917 2.133281 CCATGAAGGTGAATGCTGGA 57.867 50.000 0.00 0.00 0.00 3.86
5669 5918 1.747355 CCATGAAGGTGAATGCTGGAC 59.253 52.381 0.00 0.00 0.00 4.02
5670 5919 2.619849 CCATGAAGGTGAATGCTGGACT 60.620 50.000 0.00 0.00 0.00 3.85
5671 5920 2.957402 TGAAGGTGAATGCTGGACTT 57.043 45.000 0.00 0.00 0.00 3.01
5672 5921 2.783135 TGAAGGTGAATGCTGGACTTC 58.217 47.619 0.00 0.00 35.96 3.01
5673 5922 2.373169 TGAAGGTGAATGCTGGACTTCT 59.627 45.455 0.00 0.00 36.28 2.85
5674 5923 3.181440 TGAAGGTGAATGCTGGACTTCTT 60.181 43.478 0.00 0.00 36.28 2.52
5675 5924 3.064900 AGGTGAATGCTGGACTTCTTC 57.935 47.619 0.00 0.00 0.00 2.87
5676 5925 2.641815 AGGTGAATGCTGGACTTCTTCT 59.358 45.455 0.00 0.00 0.00 2.85
5677 5926 2.746362 GGTGAATGCTGGACTTCTTCTG 59.254 50.000 0.00 0.00 0.00 3.02
5678 5927 2.746362 GTGAATGCTGGACTTCTTCTGG 59.254 50.000 0.00 0.00 0.00 3.86
5679 5928 1.742268 GAATGCTGGACTTCTTCTGGC 59.258 52.381 0.00 0.00 0.00 4.85
5680 5929 0.034670 ATGCTGGACTTCTTCTGGCC 60.035 55.000 0.00 0.00 0.00 5.36
5681 5930 1.377856 GCTGGACTTCTTCTGGCCC 60.378 63.158 0.00 0.00 0.00 5.80
5682 5931 1.301293 CTGGACTTCTTCTGGCCCC 59.699 63.158 0.00 0.00 0.00 5.80
5683 5932 1.463214 TGGACTTCTTCTGGCCCCA 60.463 57.895 0.00 0.00 0.00 4.96
5684 5933 1.301293 GGACTTCTTCTGGCCCCAG 59.699 63.158 8.03 8.03 44.86 4.45
5685 5934 1.492993 GGACTTCTTCTGGCCCCAGT 61.493 60.000 13.66 0.00 43.96 4.00
5686 5935 0.035915 GACTTCTTCTGGCCCCAGTC 60.036 60.000 13.66 0.00 43.96 3.51
5687 5936 0.768221 ACTTCTTCTGGCCCCAGTCA 60.768 55.000 13.66 2.16 43.96 3.41
5688 5937 0.322008 CTTCTTCTGGCCCCAGTCAC 60.322 60.000 13.66 0.00 43.96 3.67
5689 5938 1.779061 TTCTTCTGGCCCCAGTCACC 61.779 60.000 13.66 0.00 43.96 4.02
5690 5939 2.121963 TTCTGGCCCCAGTCACCT 60.122 61.111 13.66 0.00 43.96 4.00
5691 5940 2.190488 CTTCTGGCCCCAGTCACCTC 62.190 65.000 13.66 0.00 43.96 3.85
5692 5941 2.930019 CTGGCCCCAGTCACCTCA 60.930 66.667 0.00 0.00 39.10 3.86
5693 5942 2.449518 TGGCCCCAGTCACCTCAA 60.450 61.111 0.00 0.00 0.00 3.02
5694 5943 2.352805 GGCCCCAGTCACCTCAAG 59.647 66.667 0.00 0.00 0.00 3.02
5695 5944 2.224159 GGCCCCAGTCACCTCAAGA 61.224 63.158 0.00 0.00 0.00 3.02
5696 5945 1.566298 GGCCCCAGTCACCTCAAGAT 61.566 60.000 0.00 0.00 0.00 2.40
5697 5946 0.107459 GCCCCAGTCACCTCAAGATC 60.107 60.000 0.00 0.00 0.00 2.75
5698 5947 1.279496 CCCCAGTCACCTCAAGATCA 58.721 55.000 0.00 0.00 0.00 2.92
5699 5948 1.065854 CCCCAGTCACCTCAAGATCAC 60.066 57.143 0.00 0.00 0.00 3.06
5700 5949 1.625315 CCCAGTCACCTCAAGATCACA 59.375 52.381 0.00 0.00 0.00 3.58
5701 5950 2.238144 CCCAGTCACCTCAAGATCACAT 59.762 50.000 0.00 0.00 0.00 3.21
5702 5951 3.268330 CCAGTCACCTCAAGATCACATG 58.732 50.000 0.00 0.00 0.00 3.21
5703 5952 2.676839 CAGTCACCTCAAGATCACATGC 59.323 50.000 0.00 0.00 0.00 4.06
5704 5953 2.570752 AGTCACCTCAAGATCACATGCT 59.429 45.455 0.00 0.00 0.00 3.79
5705 5954 2.676839 GTCACCTCAAGATCACATGCTG 59.323 50.000 0.00 0.00 0.00 4.41
5706 5955 2.568509 TCACCTCAAGATCACATGCTGA 59.431 45.455 0.00 0.00 0.00 4.26
5707 5956 3.008266 TCACCTCAAGATCACATGCTGAA 59.992 43.478 0.00 0.00 30.60 3.02
5708 5957 3.945921 CACCTCAAGATCACATGCTGAAT 59.054 43.478 0.00 0.00 30.60 2.57
5709 5958 4.398358 CACCTCAAGATCACATGCTGAATT 59.602 41.667 0.00 0.00 30.60 2.17
5710 5959 4.639310 ACCTCAAGATCACATGCTGAATTC 59.361 41.667 0.00 0.00 30.60 2.17
5711 5960 4.036498 CCTCAAGATCACATGCTGAATTCC 59.964 45.833 2.27 0.00 30.60 3.01
5712 5961 3.949754 TCAAGATCACATGCTGAATTCCC 59.050 43.478 2.27 0.00 30.60 3.97
5713 5962 2.941480 AGATCACATGCTGAATTCCCC 58.059 47.619 2.27 0.00 30.60 4.81
5714 5963 1.605710 GATCACATGCTGAATTCCCCG 59.394 52.381 2.27 0.00 30.60 5.73
5715 5964 0.394216 TCACATGCTGAATTCCCCGG 60.394 55.000 2.27 0.00 0.00 5.73
5716 5965 0.394216 CACATGCTGAATTCCCCGGA 60.394 55.000 0.73 0.00 0.00 5.14
5717 5966 0.107017 ACATGCTGAATTCCCCGGAG 60.107 55.000 0.73 0.00 0.00 4.63
5718 5967 0.181114 CATGCTGAATTCCCCGGAGA 59.819 55.000 0.73 0.00 0.00 3.71
5719 5968 0.181350 ATGCTGAATTCCCCGGAGAC 59.819 55.000 0.73 0.00 0.00 3.36
5720 5969 1.198094 TGCTGAATTCCCCGGAGACA 61.198 55.000 0.73 0.00 0.00 3.41
5721 5970 0.035439 GCTGAATTCCCCGGAGACAA 60.035 55.000 0.73 0.00 0.00 3.18
5722 5971 1.613255 GCTGAATTCCCCGGAGACAAA 60.613 52.381 0.73 0.00 0.00 2.83
5723 5972 2.945890 GCTGAATTCCCCGGAGACAAAT 60.946 50.000 0.73 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 6.428159 GGAAGAATGACACACAAAGACATAGT 59.572 38.462 0.00 0.00 0.00 2.12
53 54 6.427853 TGGAAGAATGACACACAAAGACATAG 59.572 38.462 0.00 0.00 0.00 2.23
64 65 5.245531 GTGTTCCTATGGAAGAATGACACA 58.754 41.667 10.37 0.00 42.88 3.72
169 171 7.500720 TGCCATTTCTTATAGATCACACATG 57.499 36.000 0.00 0.00 0.00 3.21
171 173 6.883756 TGTTGCCATTTCTTATAGATCACACA 59.116 34.615 0.00 0.00 0.00 3.72
185 187 4.815846 AGGAAATTGTGTTGTTGCCATTTC 59.184 37.500 0.00 0.00 0.00 2.17
190 192 6.919721 TCTTATAGGAAATTGTGTTGTTGCC 58.080 36.000 0.00 0.00 0.00 4.52
197 199 7.232534 TGCTGGTTTTCTTATAGGAAATTGTGT 59.767 33.333 10.48 0.00 35.51 3.72
213 215 8.816640 TCTAATCTTGATTTTTGCTGGTTTTC 57.183 30.769 0.95 0.00 0.00 2.29
257 259 6.769822 CAGGATGTAAAGATAGAAGCACCATT 59.230 38.462 0.00 0.00 0.00 3.16
259 261 5.396772 CCAGGATGTAAAGATAGAAGCACCA 60.397 44.000 0.00 0.00 0.00 4.17
260 262 5.059833 CCAGGATGTAAAGATAGAAGCACC 58.940 45.833 0.00 0.00 0.00 5.01
277 280 3.074390 TGTTGACAAATCACTCCCAGGAT 59.926 43.478 0.00 0.00 33.38 3.24
281 284 3.156293 CCATGTTGACAAATCACTCCCA 58.844 45.455 0.00 0.00 33.38 4.37
287 290 3.005684 GTCCTTGCCATGTTGACAAATCA 59.994 43.478 0.00 0.00 0.00 2.57
293 296 3.665745 AAATGTCCTTGCCATGTTGAC 57.334 42.857 0.00 0.00 0.00 3.18
294 297 5.479724 TCATAAAATGTCCTTGCCATGTTGA 59.520 36.000 0.00 0.00 0.00 3.18
295 298 5.722263 TCATAAAATGTCCTTGCCATGTTG 58.278 37.500 0.00 0.00 0.00 3.33
296 299 5.999205 TCATAAAATGTCCTTGCCATGTT 57.001 34.783 0.00 0.00 0.00 2.71
297 300 7.844493 ATATCATAAAATGTCCTTGCCATGT 57.156 32.000 0.00 0.00 0.00 3.21
298 301 7.964559 CGTATATCATAAAATGTCCTTGCCATG 59.035 37.037 0.00 0.00 0.00 3.66
299 302 7.665559 ACGTATATCATAAAATGTCCTTGCCAT 59.334 33.333 0.00 0.00 0.00 4.40
300 303 6.995686 ACGTATATCATAAAATGTCCTTGCCA 59.004 34.615 0.00 0.00 0.00 4.92
301 304 7.298122 CACGTATATCATAAAATGTCCTTGCC 58.702 38.462 0.00 0.00 0.00 4.52
303 306 8.601845 TCCACGTATATCATAAAATGTCCTTG 57.398 34.615 0.00 0.00 0.00 3.61
304 307 9.273016 CTTCCACGTATATCATAAAATGTCCTT 57.727 33.333 0.00 0.00 0.00 3.36
305 308 8.429641 ACTTCCACGTATATCATAAAATGTCCT 58.570 33.333 0.00 0.00 0.00 3.85
306 309 8.495949 CACTTCCACGTATATCATAAAATGTCC 58.504 37.037 0.00 0.00 0.00 4.02
307 310 9.042008 ACACTTCCACGTATATCATAAAATGTC 57.958 33.333 0.00 0.00 0.00 3.06
308 311 8.958119 ACACTTCCACGTATATCATAAAATGT 57.042 30.769 0.00 0.00 0.00 2.71
309 312 9.261180 AGACACTTCCACGTATATCATAAAATG 57.739 33.333 0.00 0.00 0.00 2.32
314 317 9.170734 GGTATAGACACTTCCACGTATATCATA 57.829 37.037 0.00 0.00 0.00 2.15
315 318 7.668469 TGGTATAGACACTTCCACGTATATCAT 59.332 37.037 0.00 0.00 0.00 2.45
321 324 3.696051 GGTGGTATAGACACTTCCACGTA 59.304 47.826 0.00 0.00 46.36 3.57
333 336 1.688772 GAGCGTCTGGGTGGTATAGA 58.311 55.000 0.00 0.00 0.00 1.98
337 340 3.066190 CGGAGCGTCTGGGTGGTA 61.066 66.667 0.00 0.00 0.00 3.25
350 353 2.417933 CTCCTTTGAAATGTCTGCGGAG 59.582 50.000 0.00 0.00 0.00 4.63
355 358 9.485206 AAATCATTTTCTCCTTTGAAATGTCTG 57.515 29.630 7.62 0.00 36.07 3.51
383 386 5.008811 CACCGGTAGTTTTGTGGTTTATTCA 59.991 40.000 6.87 0.00 0.00 2.57
385 388 4.888823 ACACCGGTAGTTTTGTGGTTTATT 59.111 37.500 6.87 0.00 33.07 1.40
393 396 2.943036 ATGGACACCGGTAGTTTTGT 57.057 45.000 6.87 0.00 0.00 2.83
395 398 5.593502 TGTTTTAATGGACACCGGTAGTTTT 59.406 36.000 6.87 6.50 0.00 2.43
403 406 3.612472 ACGTTGTTTTAATGGACACCG 57.388 42.857 3.67 3.67 37.63 4.94
419 422 9.666626 TTCGTTATATTTCAAATCAACAACGTT 57.333 25.926 13.59 0.00 37.90 3.99
423 426 9.554724 GCTCTTCGTTATATTTCAAATCAACAA 57.445 29.630 7.80 2.65 0.00 2.83
424 427 8.181573 GGCTCTTCGTTATATTTCAAATCAACA 58.818 33.333 7.80 0.00 0.00 3.33
433 436 6.317893 TGAAAAGGGGCTCTTCGTTATATTTC 59.682 38.462 0.00 0.00 33.94 2.17
434 437 6.184789 TGAAAAGGGGCTCTTCGTTATATTT 58.815 36.000 0.00 0.00 33.94 1.40
485 488 5.056330 CGTCGTGTCGATGTGTTTATTTTTG 59.944 40.000 0.00 0.00 38.42 2.44
495 498 1.519343 TGTTTTCGTCGTGTCGATGTG 59.481 47.619 10.39 0.00 42.61 3.21
496 499 1.842720 TGTTTTCGTCGTGTCGATGT 58.157 45.000 10.39 0.00 42.61 3.06
550 553 0.947180 TTCTTTCGGCGAAAGGTCCG 60.947 55.000 43.84 28.88 46.15 4.79
655 658 4.086457 GGGAGCAAAATAGGTCTTTTCCA 58.914 43.478 0.00 0.00 36.33 3.53
656 659 3.447586 GGGGAGCAAAATAGGTCTTTTCC 59.552 47.826 0.00 0.00 36.33 3.13
685 691 2.053627 CCACAATTTTCTCGCAGCAAC 58.946 47.619 0.00 0.00 0.00 4.17
692 698 7.636259 TTTATCAAAAGCCACAATTTTCTCG 57.364 32.000 0.00 0.00 0.00 4.04
755 761 3.950794 CTCGCCCGCTAGGTTGCAA 62.951 63.158 0.00 0.00 38.26 4.08
756 762 4.451150 CTCGCCCGCTAGGTTGCA 62.451 66.667 0.00 0.00 38.26 4.08
757 763 4.143333 TCTCGCCCGCTAGGTTGC 62.143 66.667 0.00 0.00 38.26 4.17
758 764 2.105128 CTCTCGCCCGCTAGGTTG 59.895 66.667 0.00 0.00 38.26 3.77
759 765 2.044252 TCTCTCGCCCGCTAGGTT 60.044 61.111 0.00 0.00 38.26 3.50
760 766 2.517402 CTCTCTCGCCCGCTAGGT 60.517 66.667 0.00 0.00 38.26 3.08
774 780 4.093743 GGAACCCTTTTCTCTCTCTCTCT 58.906 47.826 0.00 0.00 0.00 3.10
775 781 3.835395 TGGAACCCTTTTCTCTCTCTCTC 59.165 47.826 0.00 0.00 0.00 3.20
776 782 3.837731 CTGGAACCCTTTTCTCTCTCTCT 59.162 47.826 0.00 0.00 0.00 3.10
777 783 3.835395 TCTGGAACCCTTTTCTCTCTCTC 59.165 47.826 0.00 0.00 0.00 3.20
1105 1154 0.677842 AGCAAGCAAAGAAGCCAAGG 59.322 50.000 0.00 0.00 34.23 3.61
1111 1160 2.401351 GCCAAGAAGCAAGCAAAGAAG 58.599 47.619 0.00 0.00 0.00 2.85
1250 1307 3.924144 TGGCTGCACAAAACCATTAATC 58.076 40.909 0.50 0.00 0.00 1.75
1379 1436 4.083590 GCCTGCAGAGAGAACAGTAAAAAG 60.084 45.833 17.39 0.00 0.00 2.27
1423 1480 1.600636 AACACCACTCCCGTGCATG 60.601 57.895 0.00 0.00 39.86 4.06
1442 1499 0.605860 CCTATCCATGGCTGCAGAGC 60.606 60.000 20.43 2.97 45.40 4.09
1466 1523 2.126882 AGCCCTTCAGCCATGTATGTA 58.873 47.619 0.00 0.00 0.00 2.29
1467 1524 0.921896 AGCCCTTCAGCCATGTATGT 59.078 50.000 0.00 0.00 0.00 2.29
1468 1525 1.679680 CAAGCCCTTCAGCCATGTATG 59.320 52.381 0.00 0.00 0.00 2.39
1469 1526 1.410648 CCAAGCCCTTCAGCCATGTAT 60.411 52.381 0.00 0.00 0.00 2.29
1499 1556 5.931441 ACGAATGCCATCTAATCTAAAGC 57.069 39.130 0.00 0.00 0.00 3.51
1594 1651 2.169179 GACGAATGAAAACATCGCAGC 58.831 47.619 0.00 0.00 40.09 5.25
1728 1786 3.953612 AGACAAGTTTCCAACAGCAATCA 59.046 39.130 0.00 0.00 0.00 2.57
1988 2047 2.492012 CAAGGCTGCAGGATATCTCAC 58.508 52.381 17.12 0.00 0.00 3.51
2055 2114 3.571401 CCCAGTTTGCAGAAGAACTTCAT 59.429 43.478 15.43 0.39 41.84 2.57
2056 2115 2.951642 CCCAGTTTGCAGAAGAACTTCA 59.048 45.455 15.43 0.00 41.84 3.02
2224 2285 5.953571 TGGATAGCCTCACTGAAGATAGTA 58.046 41.667 0.00 0.00 34.31 1.82
2246 2307 8.550376 CACCACCATTTAAACAAAAGAATTCTG 58.450 33.333 9.17 0.00 0.00 3.02
2278 2339 5.512788 GTGATGCAGTCGATGTAAATTTTGG 59.487 40.000 0.00 0.00 0.00 3.28
2379 2440 6.278363 TCAACCGTTCCTTAGATATACTTGC 58.722 40.000 0.00 0.00 0.00 4.01
2380 2441 7.926555 ACATCAACCGTTCCTTAGATATACTTG 59.073 37.037 0.00 0.00 0.00 3.16
2440 2501 5.027293 TGATCATTCACAGTAGGTCCATG 57.973 43.478 0.00 0.00 0.00 3.66
2487 2548 7.148804 GCAGATATCAAAAAGCATATGCACATG 60.149 37.037 28.62 19.93 45.16 3.21
2550 2611 0.736053 TTTCACAACCAAGGCACGAC 59.264 50.000 0.00 0.00 0.00 4.34
2633 2694 6.601332 ACAAGAAGGTCAGGTGAGAATTTAA 58.399 36.000 0.00 0.00 0.00 1.52
2690 2751 0.106719 CACTGAACCCAGGGTTGTGT 60.107 55.000 30.03 22.00 46.95 3.72
2900 2961 3.812053 GCATGCACCTTCTTGGAGTATAG 59.188 47.826 14.21 0.00 39.71 1.31
2950 3011 9.442062 TGTATCTACAGGGTCCATTTTATAGAA 57.558 33.333 0.00 0.00 0.00 2.10
3114 3181 7.095523 GCACAAACAATTCATCAGTATTGCTTT 60.096 33.333 0.00 0.00 36.36 3.51
3117 3184 5.865552 AGCACAAACAATTCATCAGTATTGC 59.134 36.000 0.00 0.00 36.36 3.56
3132 3199 5.181748 AGTTAAAAATGGCAAGCACAAACA 58.818 33.333 0.00 0.00 0.00 2.83
3278 3346 4.256920 CAAGTTAGAGGCAGCATACACTT 58.743 43.478 0.00 0.00 0.00 3.16
3490 3559 2.696187 GCAAACTTTGGTTACCTTCCCA 59.304 45.455 2.07 0.00 34.90 4.37
3533 3602 8.422566 ACTGAAGAAGCACTAGTAAGTTAACTT 58.577 33.333 23.58 23.58 39.85 2.66
3535 3604 8.590719 AACTGAAGAAGCACTAGTAAGTTAAC 57.409 34.615 0.00 0.00 31.97 2.01
3566 3637 9.574458 GCTATAACTATGTGTCGTAATGATGAT 57.426 33.333 0.00 0.00 0.00 2.45
3705 3780 5.304778 GGTTATGAAAAGCCAAACATGGTT 58.695 37.500 0.00 0.00 0.00 3.67
3847 3945 8.621532 TGGACAGAATAGAAATATATTGCACC 57.378 34.615 6.21 0.00 0.00 5.01
3882 3980 8.940768 TTTATGAGGAACAAAAAGAAAGTTGG 57.059 30.769 0.00 0.00 0.00 3.77
3909 4007 8.238631 GGTATAAATAGCGAAACAGGAAAACAA 58.761 33.333 0.00 0.00 0.00 2.83
3968 4066 1.270678 ACGTAGGAGAAACACAAGGCC 60.271 52.381 0.00 0.00 0.00 5.19
3969 4067 2.165319 ACGTAGGAGAAACACAAGGC 57.835 50.000 0.00 0.00 0.00 4.35
3982 4080 4.745649 ACTTAAGCTCTTAGCAACGTAGG 58.254 43.478 1.29 0.00 45.56 3.18
4012 4110 9.029368 CCTCCTGGAAGAAATAAAGAAGAAAAT 57.971 33.333 0.00 0.00 34.07 1.82
4017 4115 6.476378 TGTCCTCCTGGAAGAAATAAAGAAG 58.524 40.000 0.00 0.00 45.18 2.85
4024 4122 2.646798 AGCTTGTCCTCCTGGAAGAAAT 59.353 45.455 0.00 0.00 45.18 2.17
4032 4131 0.457851 CCTCGTAGCTTGTCCTCCTG 59.542 60.000 0.00 0.00 0.00 3.86
4076 4175 7.095857 GCCTCTATCAAGATATGAAGTTGTTCG 60.096 40.741 0.00 0.00 42.54 3.95
4160 4259 1.168714 CCACTGGCTTTAGCAGTTCC 58.831 55.000 3.88 0.00 44.36 3.62
4378 4622 7.924940 GGAACCAATCAAGAGAGATCAATAAC 58.075 38.462 0.00 0.00 0.00 1.89
4449 4693 8.459635 TGTGCAATTGTAAGTAAACACAAGTTA 58.540 29.630 7.40 0.00 38.01 2.24
4690 4934 4.465512 GCACGCTTCATGCCACCG 62.466 66.667 0.00 0.00 37.08 4.94
4899 5143 1.002134 CTTCCATTGTCCCAGCGGT 60.002 57.895 0.00 0.00 0.00 5.68
4911 5155 3.375699 CCAGGACCACTACTACTTCCAT 58.624 50.000 0.00 0.00 0.00 3.41
5040 5285 3.536570 TCTCTAGTCTGTCTGTCATCGG 58.463 50.000 0.00 0.00 0.00 4.18
5042 5287 3.315191 GCCTCTCTAGTCTGTCTGTCATC 59.685 52.174 0.00 0.00 0.00 2.92
5092 5337 1.820090 CGCCTAACAGGGGGTGAAAAA 60.820 52.381 1.44 0.00 43.90 1.94
5315 5564 6.149640 CCAAAATTGCCACAAATTCATCATGA 59.850 34.615 0.00 0.00 0.00 3.07
5316 5565 6.318628 CCAAAATTGCCACAAATTCATCATG 58.681 36.000 0.00 0.00 0.00 3.07
5317 5566 5.416326 CCCAAAATTGCCACAAATTCATCAT 59.584 36.000 0.00 0.00 0.00 2.45
5344 5593 1.001378 AGACGCAAACAAACATGCCTC 60.001 47.619 0.00 0.00 39.39 4.70
5361 5610 2.295349 CCATCCATTATGCCAAGCAGAC 59.705 50.000 0.00 0.00 43.65 3.51
5374 5623 1.113517 GCAGCAGCATCCCATCCATT 61.114 55.000 0.00 0.00 41.58 3.16
5377 5626 2.194212 CAGCAGCAGCATCCCATCC 61.194 63.158 3.17 0.00 45.49 3.51
5399 5648 4.135153 CTCCCACGTGAGCCCGAG 62.135 72.222 19.30 9.35 0.00 4.63
5402 5651 4.436998 CGTCTCCCACGTGAGCCC 62.437 72.222 19.30 0.73 44.07 5.19
5423 5672 4.947388 ACAATAATGCAGAATTACCACGGT 59.053 37.500 0.00 0.00 33.53 4.83
5450 5699 8.673711 GCAGAATTACCACATTTGTATCTACAA 58.326 33.333 0.00 0.00 43.80 2.41
5451 5700 7.826744 TGCAGAATTACCACATTTGTATCTACA 59.173 33.333 0.00 0.00 0.00 2.74
5452 5701 8.122952 GTGCAGAATTACCACATTTGTATCTAC 58.877 37.037 0.00 0.00 0.00 2.59
5453 5702 8.046708 AGTGCAGAATTACCACATTTGTATCTA 58.953 33.333 0.00 0.00 32.09 1.98
5454 5703 6.886459 AGTGCAGAATTACCACATTTGTATCT 59.114 34.615 0.00 0.00 32.09 1.98
5455 5704 7.088589 AGTGCAGAATTACCACATTTGTATC 57.911 36.000 0.00 0.00 32.09 2.24
5456 5705 8.752005 ATAGTGCAGAATTACCACATTTGTAT 57.248 30.769 0.00 0.00 32.09 2.29
5457 5706 8.458052 CAATAGTGCAGAATTACCACATTTGTA 58.542 33.333 0.00 0.00 32.09 2.41
5458 5707 7.039784 ACAATAGTGCAGAATTACCACATTTGT 60.040 33.333 0.00 12.31 34.73 2.83
5459 5708 7.315142 ACAATAGTGCAGAATTACCACATTTG 58.685 34.615 0.00 9.14 33.58 2.32
5460 5709 7.466746 ACAATAGTGCAGAATTACCACATTT 57.533 32.000 0.00 0.00 32.09 2.32
5461 5710 7.039784 ACAACAATAGTGCAGAATTACCACATT 60.040 33.333 0.00 2.23 32.09 2.71
5462 5711 6.434028 ACAACAATAGTGCAGAATTACCACAT 59.566 34.615 0.00 0.00 32.09 3.21
5463 5712 5.767665 ACAACAATAGTGCAGAATTACCACA 59.232 36.000 0.00 0.00 32.09 4.17
5464 5713 6.254281 ACAACAATAGTGCAGAATTACCAC 57.746 37.500 0.00 0.00 0.00 4.16
5465 5714 6.892658 AACAACAATAGTGCAGAATTACCA 57.107 33.333 0.00 0.00 0.00 3.25
5466 5715 6.586082 CCAAACAACAATAGTGCAGAATTACC 59.414 38.462 0.00 0.00 0.00 2.85
5467 5716 7.367285 TCCAAACAACAATAGTGCAGAATTAC 58.633 34.615 0.00 0.00 0.00 1.89
5468 5717 7.517614 TCCAAACAACAATAGTGCAGAATTA 57.482 32.000 0.00 0.00 0.00 1.40
5469 5718 6.403866 TCCAAACAACAATAGTGCAGAATT 57.596 33.333 0.00 0.00 0.00 2.17
5470 5719 6.265196 TCTTCCAAACAACAATAGTGCAGAAT 59.735 34.615 0.00 0.00 0.00 2.40
5471 5720 5.592282 TCTTCCAAACAACAATAGTGCAGAA 59.408 36.000 0.00 0.00 0.00 3.02
5472 5721 5.129634 TCTTCCAAACAACAATAGTGCAGA 58.870 37.500 0.00 0.00 0.00 4.26
5473 5722 5.437289 TCTTCCAAACAACAATAGTGCAG 57.563 39.130 0.00 0.00 0.00 4.41
5474 5723 6.488344 TGTATCTTCCAAACAACAATAGTGCA 59.512 34.615 0.00 0.00 0.00 4.57
5475 5724 6.908825 TGTATCTTCCAAACAACAATAGTGC 58.091 36.000 0.00 0.00 0.00 4.40
5476 5725 8.322906 TCTGTATCTTCCAAACAACAATAGTG 57.677 34.615 0.00 0.00 0.00 2.74
5477 5726 8.950210 CATCTGTATCTTCCAAACAACAATAGT 58.050 33.333 0.00 0.00 0.00 2.12
5478 5727 7.912250 GCATCTGTATCTTCCAAACAACAATAG 59.088 37.037 0.00 0.00 0.00 1.73
5479 5728 7.392953 TGCATCTGTATCTTCCAAACAACAATA 59.607 33.333 0.00 0.00 0.00 1.90
5480 5729 6.209192 TGCATCTGTATCTTCCAAACAACAAT 59.791 34.615 0.00 0.00 0.00 2.71
5481 5730 5.534278 TGCATCTGTATCTTCCAAACAACAA 59.466 36.000 0.00 0.00 0.00 2.83
5482 5731 5.069318 TGCATCTGTATCTTCCAAACAACA 58.931 37.500 0.00 0.00 0.00 3.33
5483 5732 5.627499 TGCATCTGTATCTTCCAAACAAC 57.373 39.130 0.00 0.00 0.00 3.32
5484 5733 9.797642 ATATATGCATCTGTATCTTCCAAACAA 57.202 29.630 0.19 0.00 0.00 2.83
5485 5734 9.223099 CATATATGCATCTGTATCTTCCAAACA 57.777 33.333 0.19 0.00 0.00 2.83
5503 5752 4.873817 TGCATTTTCCTGCACATATATGC 58.126 39.130 12.79 0.00 46.76 3.14
5513 5762 2.231964 TCCACTGAATGCATTTTCCTGC 59.768 45.455 14.33 0.00 42.62 4.85
5514 5763 4.524316 TTCCACTGAATGCATTTTCCTG 57.476 40.909 14.33 7.58 0.00 3.86
5515 5764 5.549742 TTTTCCACTGAATGCATTTTCCT 57.450 34.783 14.33 0.00 0.00 3.36
5516 5765 6.806388 ATTTTTCCACTGAATGCATTTTCC 57.194 33.333 14.33 1.20 0.00 3.13
5517 5766 9.153721 TGATATTTTTCCACTGAATGCATTTTC 57.846 29.630 14.33 2.94 0.00 2.29
5518 5767 9.158233 CTGATATTTTTCCACTGAATGCATTTT 57.842 29.630 14.33 0.00 0.00 1.82
5519 5768 7.279313 GCTGATATTTTTCCACTGAATGCATTT 59.721 33.333 14.33 0.00 0.00 2.32
5520 5769 6.759827 GCTGATATTTTTCCACTGAATGCATT 59.240 34.615 12.83 12.83 0.00 3.56
5521 5770 6.278363 GCTGATATTTTTCCACTGAATGCAT 58.722 36.000 0.00 0.00 0.00 3.96
5522 5771 5.394443 GGCTGATATTTTTCCACTGAATGCA 60.394 40.000 0.00 0.00 0.00 3.96
5523 5772 5.045872 GGCTGATATTTTTCCACTGAATGC 58.954 41.667 0.00 0.00 0.00 3.56
5524 5773 6.461110 AGGCTGATATTTTTCCACTGAATG 57.539 37.500 0.00 0.00 0.00 2.67
5525 5774 8.055181 TCTTAGGCTGATATTTTTCCACTGAAT 58.945 33.333 0.00 0.00 0.00 2.57
5526 5775 7.402054 TCTTAGGCTGATATTTTTCCACTGAA 58.598 34.615 0.00 0.00 0.00 3.02
5527 5776 6.957631 TCTTAGGCTGATATTTTTCCACTGA 58.042 36.000 0.00 0.00 0.00 3.41
5528 5777 7.630242 TTCTTAGGCTGATATTTTTCCACTG 57.370 36.000 0.00 0.00 0.00 3.66
5529 5778 8.829373 AATTCTTAGGCTGATATTTTTCCACT 57.171 30.769 0.00 0.00 0.00 4.00
5530 5779 9.875691 AAAATTCTTAGGCTGATATTTTTCCAC 57.124 29.630 0.00 0.00 0.00 4.02
5539 5788 9.859427 CAATGTTTGAAAATTCTTAGGCTGATA 57.141 29.630 0.00 0.00 0.00 2.15
5540 5789 7.820872 CCAATGTTTGAAAATTCTTAGGCTGAT 59.179 33.333 0.00 0.00 0.00 2.90
5541 5790 7.015098 TCCAATGTTTGAAAATTCTTAGGCTGA 59.985 33.333 0.00 0.00 0.00 4.26
5542 5791 7.116805 GTCCAATGTTTGAAAATTCTTAGGCTG 59.883 37.037 0.00 0.00 0.00 4.85
5543 5792 7.015584 AGTCCAATGTTTGAAAATTCTTAGGCT 59.984 33.333 0.00 0.00 0.00 4.58
5544 5793 7.154656 AGTCCAATGTTTGAAAATTCTTAGGC 58.845 34.615 0.00 0.00 0.00 3.93
5548 5797 9.883142 TGTTTAGTCCAATGTTTGAAAATTCTT 57.117 25.926 0.00 0.00 0.00 2.52
5549 5798 9.883142 TTGTTTAGTCCAATGTTTGAAAATTCT 57.117 25.926 0.00 0.00 0.00 2.40
5551 5800 9.883142 TCTTGTTTAGTCCAATGTTTGAAAATT 57.117 25.926 0.00 0.00 0.00 1.82
5553 5802 9.528018 GATCTTGTTTAGTCCAATGTTTGAAAA 57.472 29.630 0.00 0.00 0.00 2.29
5554 5803 8.912988 AGATCTTGTTTAGTCCAATGTTTGAAA 58.087 29.630 0.00 0.00 0.00 2.69
5555 5804 8.463930 AGATCTTGTTTAGTCCAATGTTTGAA 57.536 30.769 0.00 0.00 0.00 2.69
5556 5805 9.219603 CTAGATCTTGTTTAGTCCAATGTTTGA 57.780 33.333 0.00 0.00 0.00 2.69
5557 5806 7.965107 GCTAGATCTTGTTTAGTCCAATGTTTG 59.035 37.037 0.00 0.00 0.00 2.93
5558 5807 7.885399 AGCTAGATCTTGTTTAGTCCAATGTTT 59.115 33.333 0.00 0.00 0.00 2.83
5559 5808 7.398024 AGCTAGATCTTGTTTAGTCCAATGTT 58.602 34.615 0.00 0.00 0.00 2.71
5560 5809 6.951971 AGCTAGATCTTGTTTAGTCCAATGT 58.048 36.000 0.00 0.00 0.00 2.71
5561 5810 7.254252 CGAAGCTAGATCTTGTTTAGTCCAATG 60.254 40.741 0.00 0.00 0.00 2.82
5562 5811 6.758886 CGAAGCTAGATCTTGTTTAGTCCAAT 59.241 38.462 0.00 0.00 0.00 3.16
5563 5812 6.100004 CGAAGCTAGATCTTGTTTAGTCCAA 58.900 40.000 0.00 0.00 0.00 3.53
5564 5813 5.185249 ACGAAGCTAGATCTTGTTTAGTCCA 59.815 40.000 11.89 0.00 0.00 4.02
5565 5814 5.652518 ACGAAGCTAGATCTTGTTTAGTCC 58.347 41.667 11.89 0.00 0.00 3.85
5566 5815 7.474190 AGTACGAAGCTAGATCTTGTTTAGTC 58.526 38.462 18.30 12.26 0.00 2.59
5567 5816 7.393841 AGTACGAAGCTAGATCTTGTTTAGT 57.606 36.000 18.62 18.62 0.00 2.24
5568 5817 7.253817 GCAAGTACGAAGCTAGATCTTGTTTAG 60.254 40.741 0.00 6.43 34.99 1.85
5569 5818 6.530534 GCAAGTACGAAGCTAGATCTTGTTTA 59.469 38.462 0.00 0.00 34.99 2.01
5570 5819 5.348997 GCAAGTACGAAGCTAGATCTTGTTT 59.651 40.000 0.00 2.70 34.99 2.83
5571 5820 4.865365 GCAAGTACGAAGCTAGATCTTGTT 59.135 41.667 0.00 0.00 34.99 2.83
5572 5821 4.158764 AGCAAGTACGAAGCTAGATCTTGT 59.841 41.667 0.00 6.66 36.73 3.16
5573 5822 4.502282 CAGCAAGTACGAAGCTAGATCTTG 59.498 45.833 0.00 0.00 36.73 3.02
5574 5823 4.440802 CCAGCAAGTACGAAGCTAGATCTT 60.441 45.833 0.00 0.00 36.73 2.40
5575 5824 3.067461 CCAGCAAGTACGAAGCTAGATCT 59.933 47.826 0.00 0.00 36.73 2.75
5576 5825 3.066900 TCCAGCAAGTACGAAGCTAGATC 59.933 47.826 8.96 0.00 36.73 2.75
5577 5826 3.024547 TCCAGCAAGTACGAAGCTAGAT 58.975 45.455 8.96 0.00 36.73 1.98
5578 5827 2.423892 CTCCAGCAAGTACGAAGCTAGA 59.576 50.000 8.96 7.15 36.73 2.43
5579 5828 2.164624 ACTCCAGCAAGTACGAAGCTAG 59.835 50.000 8.96 7.23 36.73 3.42
5580 5829 2.094700 CACTCCAGCAAGTACGAAGCTA 60.095 50.000 8.96 0.00 36.73 3.32
5581 5830 0.969894 ACTCCAGCAAGTACGAAGCT 59.030 50.000 4.27 4.27 39.63 3.74
5582 5831 1.071605 CACTCCAGCAAGTACGAAGC 58.928 55.000 0.00 0.00 0.00 3.86
5583 5832 1.714794 CCACTCCAGCAAGTACGAAG 58.285 55.000 0.00 0.00 0.00 3.79
5584 5833 0.320421 GCCACTCCAGCAAGTACGAA 60.320 55.000 0.00 0.00 0.00 3.85
5585 5834 1.292223 GCCACTCCAGCAAGTACGA 59.708 57.895 0.00 0.00 0.00 3.43
5586 5835 2.094659 CGCCACTCCAGCAAGTACG 61.095 63.158 0.00 0.00 0.00 3.67
5587 5836 0.602905 AACGCCACTCCAGCAAGTAC 60.603 55.000 0.00 0.00 0.00 2.73
5588 5837 0.602638 CAACGCCACTCCAGCAAGTA 60.603 55.000 0.00 0.00 0.00 2.24
5589 5838 1.893808 CAACGCCACTCCAGCAAGT 60.894 57.895 0.00 0.00 0.00 3.16
5590 5839 2.620112 CCAACGCCACTCCAGCAAG 61.620 63.158 0.00 0.00 0.00 4.01
5591 5840 2.594303 CCAACGCCACTCCAGCAA 60.594 61.111 0.00 0.00 0.00 3.91
5607 5856 4.397010 TGGGGGAAATGGCTGGCC 62.397 66.667 4.43 4.43 0.00 5.36
5608 5857 2.761213 CTGGGGGAAATGGCTGGC 60.761 66.667 0.00 0.00 0.00 4.85
5609 5858 2.761213 GCTGGGGGAAATGGCTGG 60.761 66.667 0.00 0.00 0.00 4.85
5610 5859 1.305549 AAGCTGGGGGAAATGGCTG 60.306 57.895 0.00 0.00 33.30 4.85
5611 5860 1.305549 CAAGCTGGGGGAAATGGCT 60.306 57.895 0.00 0.00 34.52 4.75
5612 5861 1.305213 TCAAGCTGGGGGAAATGGC 60.305 57.895 0.00 0.00 0.00 4.40
5613 5862 1.325476 GCTCAAGCTGGGGGAAATGG 61.325 60.000 0.00 0.00 38.21 3.16
5614 5863 2.196319 GCTCAAGCTGGGGGAAATG 58.804 57.895 0.00 0.00 38.21 2.32
5615 5864 4.772678 GCTCAAGCTGGGGGAAAT 57.227 55.556 0.00 0.00 38.21 2.17
5625 5874 3.569548 GCAGGAAAAGTAAAGCTCAAGC 58.430 45.455 0.00 0.00 42.49 4.01
5626 5875 3.498397 TCGCAGGAAAAGTAAAGCTCAAG 59.502 43.478 0.00 0.00 0.00 3.02
5627 5876 3.250040 GTCGCAGGAAAAGTAAAGCTCAA 59.750 43.478 0.00 0.00 0.00 3.02
5628 5877 2.806244 GTCGCAGGAAAAGTAAAGCTCA 59.194 45.455 0.00 0.00 0.00 4.26
5629 5878 2.159824 GGTCGCAGGAAAAGTAAAGCTC 59.840 50.000 0.00 0.00 0.00 4.09
5630 5879 2.152016 GGTCGCAGGAAAAGTAAAGCT 58.848 47.619 0.00 0.00 0.00 3.74
5631 5880 1.877443 TGGTCGCAGGAAAAGTAAAGC 59.123 47.619 0.00 0.00 0.00 3.51
5632 5881 3.751175 TCATGGTCGCAGGAAAAGTAAAG 59.249 43.478 0.00 0.00 0.00 1.85
5633 5882 3.745799 TCATGGTCGCAGGAAAAGTAAA 58.254 40.909 0.00 0.00 0.00 2.01
5634 5883 3.410631 TCATGGTCGCAGGAAAAGTAA 57.589 42.857 0.00 0.00 0.00 2.24
5635 5884 3.334691 CTTCATGGTCGCAGGAAAAGTA 58.665 45.455 0.00 0.00 0.00 2.24
5636 5885 2.154462 CTTCATGGTCGCAGGAAAAGT 58.846 47.619 0.00 0.00 0.00 2.66
5637 5886 1.470098 CCTTCATGGTCGCAGGAAAAG 59.530 52.381 0.00 0.00 0.00 2.27
5638 5887 1.533625 CCTTCATGGTCGCAGGAAAA 58.466 50.000 0.00 0.00 0.00 2.29
5639 5888 3.248043 CCTTCATGGTCGCAGGAAA 57.752 52.632 0.00 0.00 0.00 3.13
5649 5898 1.747355 GTCCAGCATTCACCTTCATGG 59.253 52.381 0.00 0.00 42.93 3.66
5650 5899 2.719739 AGTCCAGCATTCACCTTCATG 58.280 47.619 0.00 0.00 0.00 3.07
5651 5900 3.009916 AGAAGTCCAGCATTCACCTTCAT 59.990 43.478 0.00 0.00 32.68 2.57
5652 5901 2.373169 AGAAGTCCAGCATTCACCTTCA 59.627 45.455 0.00 0.00 32.68 3.02
5653 5902 3.064900 AGAAGTCCAGCATTCACCTTC 57.935 47.619 0.00 0.00 0.00 3.46
5654 5903 3.073650 AGAAGAAGTCCAGCATTCACCTT 59.926 43.478 0.00 0.00 0.00 3.50
5655 5904 2.641815 AGAAGAAGTCCAGCATTCACCT 59.358 45.455 0.00 0.00 0.00 4.00
5656 5905 2.746362 CAGAAGAAGTCCAGCATTCACC 59.254 50.000 0.00 0.00 0.00 4.02
5657 5906 2.746362 CCAGAAGAAGTCCAGCATTCAC 59.254 50.000 0.00 0.00 0.00 3.18
5658 5907 2.877300 GCCAGAAGAAGTCCAGCATTCA 60.877 50.000 0.00 0.00 0.00 2.57
5659 5908 1.742268 GCCAGAAGAAGTCCAGCATTC 59.258 52.381 0.00 0.00 0.00 2.67
5660 5909 1.615384 GGCCAGAAGAAGTCCAGCATT 60.615 52.381 0.00 0.00 0.00 3.56
5661 5910 0.034670 GGCCAGAAGAAGTCCAGCAT 60.035 55.000 0.00 0.00 0.00 3.79
5662 5911 1.376466 GGCCAGAAGAAGTCCAGCA 59.624 57.895 0.00 0.00 0.00 4.41
5663 5912 1.377856 GGGCCAGAAGAAGTCCAGC 60.378 63.158 4.39 0.00 0.00 4.85
5664 5913 1.301293 GGGGCCAGAAGAAGTCCAG 59.699 63.158 4.39 0.00 0.00 3.86
5665 5914 1.463214 TGGGGCCAGAAGAAGTCCA 60.463 57.895 4.39 0.00 0.00 4.02
5666 5915 1.301293 CTGGGGCCAGAAGAAGTCC 59.699 63.158 4.39 0.00 46.30 3.85
5667 5916 0.035915 GACTGGGGCCAGAAGAAGTC 60.036 60.000 4.39 4.04 46.30 3.01
5668 5917 0.768221 TGACTGGGGCCAGAAGAAGT 60.768 55.000 4.39 0.00 46.30 3.01
5669 5918 0.322008 GTGACTGGGGCCAGAAGAAG 60.322 60.000 4.39 0.00 46.30 2.85
5670 5919 1.761174 GTGACTGGGGCCAGAAGAA 59.239 57.895 4.39 0.00 46.30 2.52
5671 5920 2.224159 GGTGACTGGGGCCAGAAGA 61.224 63.158 4.39 0.00 46.30 2.87
5672 5921 2.190488 GAGGTGACTGGGGCCAGAAG 62.190 65.000 4.39 1.70 46.30 2.85
5673 5922 2.121963 AGGTGACTGGGGCCAGAA 60.122 61.111 4.39 0.00 46.30 3.02
5674 5923 2.607750 GAGGTGACTGGGGCCAGA 60.608 66.667 4.39 0.00 46.30 3.86
5676 5925 2.449518 TTGAGGTGACTGGGGCCA 60.450 61.111 4.39 0.00 44.43 5.36
5677 5926 1.566298 ATCTTGAGGTGACTGGGGCC 61.566 60.000 0.00 0.00 44.43 5.80
5678 5927 0.107459 GATCTTGAGGTGACTGGGGC 60.107 60.000 0.00 0.00 44.43 5.80
5679 5928 1.065854 GTGATCTTGAGGTGACTGGGG 60.066 57.143 0.00 0.00 44.43 4.96
5680 5929 1.625315 TGTGATCTTGAGGTGACTGGG 59.375 52.381 0.00 0.00 44.43 4.45
5681 5930 3.268330 CATGTGATCTTGAGGTGACTGG 58.732 50.000 0.00 0.00 44.43 4.00
5682 5931 2.676839 GCATGTGATCTTGAGGTGACTG 59.323 50.000 0.00 0.00 44.43 3.51
5683 5932 5.841815 TCAGCATGTGATCTTGAGGTGACT 61.842 45.833 0.00 0.00 40.52 3.41
5684 5933 2.676839 CAGCATGTGATCTTGAGGTGAC 59.323 50.000 0.00 0.00 0.00 3.67
5685 5934 2.568509 TCAGCATGTGATCTTGAGGTGA 59.431 45.455 0.00 0.69 37.40 4.02
5686 5935 2.981898 TCAGCATGTGATCTTGAGGTG 58.018 47.619 0.00 0.00 37.40 4.00
5687 5936 3.708403 TTCAGCATGTGATCTTGAGGT 57.292 42.857 0.00 0.00 37.40 3.85
5688 5937 4.036498 GGAATTCAGCATGTGATCTTGAGG 59.964 45.833 7.93 0.00 37.40 3.86
5689 5938 4.036498 GGGAATTCAGCATGTGATCTTGAG 59.964 45.833 7.93 0.00 37.40 3.02
5690 5939 3.949754 GGGAATTCAGCATGTGATCTTGA 59.050 43.478 7.93 0.00 37.40 3.02
5691 5940 3.067742 GGGGAATTCAGCATGTGATCTTG 59.932 47.826 7.93 0.00 37.40 3.02
5692 5941 3.294214 GGGGAATTCAGCATGTGATCTT 58.706 45.455 7.93 0.00 37.40 2.40
5693 5942 2.747467 CGGGGAATTCAGCATGTGATCT 60.747 50.000 7.93 0.00 37.40 2.75
5694 5943 1.605710 CGGGGAATTCAGCATGTGATC 59.394 52.381 7.93 0.00 37.40 2.92
5695 5944 1.683943 CGGGGAATTCAGCATGTGAT 58.316 50.000 7.93 0.00 37.40 3.06
5696 5945 0.394216 CCGGGGAATTCAGCATGTGA 60.394 55.000 7.93 0.00 37.40 3.58
5697 5946 0.394216 TCCGGGGAATTCAGCATGTG 60.394 55.000 7.93 0.00 37.40 3.21
5698 5947 0.107017 CTCCGGGGAATTCAGCATGT 60.107 55.000 7.93 0.00 37.40 3.21
5699 5948 0.181114 TCTCCGGGGAATTCAGCATG 59.819 55.000 0.00 0.00 37.54 4.06
5700 5949 0.181350 GTCTCCGGGGAATTCAGCAT 59.819 55.000 5.00 0.00 0.00 3.79
5701 5950 1.198094 TGTCTCCGGGGAATTCAGCA 61.198 55.000 5.00 0.00 0.00 4.41
5702 5951 0.035439 TTGTCTCCGGGGAATTCAGC 60.035 55.000 5.00 0.00 0.00 4.26
5703 5952 2.489938 TTTGTCTCCGGGGAATTCAG 57.510 50.000 5.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.