Multiple sequence alignment - TraesCS5B01G479100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G479100 | chr5B | 100.000 | 4391 | 0 | 0 | 1 | 4391 | 650545112 | 650549502 | 0.000000e+00 | 8109.0 |
1 | TraesCS5B01G479100 | chr5B | 90.347 | 259 | 6 | 5 | 2274 | 2523 | 650547305 | 650547553 | 5.480000e-84 | 322.0 |
2 | TraesCS5B01G479100 | chr5B | 90.347 | 259 | 6 | 5 | 2194 | 2442 | 650547385 | 650547634 | 5.480000e-84 | 322.0 |
3 | TraesCS5B01G479100 | chr5B | 92.308 | 169 | 5 | 1 | 2363 | 2523 | 650547305 | 650547473 | 2.640000e-57 | 233.0 |
4 | TraesCS5B01G479100 | chr5B | 92.308 | 169 | 5 | 1 | 2194 | 2362 | 650547474 | 650547634 | 2.640000e-57 | 233.0 |
5 | TraesCS5B01G479100 | chr5B | 88.976 | 127 | 14 | 0 | 2599 | 2725 | 266005268 | 266005394 | 1.630000e-34 | 158.0 |
6 | TraesCS5B01G479100 | chr5B | 98.750 | 80 | 0 | 1 | 2443 | 2522 | 650547305 | 650547383 | 1.650000e-29 | 141.0 |
7 | TraesCS5B01G479100 | chr5B | 98.750 | 80 | 0 | 1 | 2194 | 2272 | 650547554 | 650547633 | 1.650000e-29 | 141.0 |
8 | TraesCS5B01G479100 | chr5D | 92.792 | 1526 | 79 | 17 | 81 | 1595 | 517839476 | 517840981 | 0.000000e+00 | 2180.0 |
9 | TraesCS5B01G479100 | chr5D | 97.076 | 684 | 18 | 2 | 2443 | 3126 | 517841618 | 517842299 | 0.000000e+00 | 1151.0 |
10 | TraesCS5B01G479100 | chr5D | 89.744 | 546 | 22 | 17 | 3279 | 3811 | 517842747 | 517843271 | 0.000000e+00 | 667.0 |
11 | TraesCS5B01G479100 | chr5D | 94.118 | 425 | 24 | 1 | 1607 | 2031 | 517840964 | 517841387 | 0.000000e+00 | 645.0 |
12 | TraesCS5B01G479100 | chr5D | 94.649 | 299 | 7 | 3 | 1981 | 2272 | 517841400 | 517841696 | 5.180000e-124 | 455.0 |
13 | TraesCS5B01G479100 | chr5D | 84.900 | 351 | 14 | 9 | 3837 | 4180 | 517843380 | 517843698 | 7.090000e-83 | 318.0 |
14 | TraesCS5B01G479100 | chr5D | 90.503 | 179 | 8 | 6 | 3148 | 3319 | 517842570 | 517842746 | 1.230000e-55 | 228.0 |
15 | TraesCS5B01G479100 | chr5D | 89.062 | 128 | 14 | 0 | 2598 | 2725 | 238711624 | 238711497 | 4.550000e-35 | 159.0 |
16 | TraesCS5B01G479100 | chr5D | 86.517 | 89 | 3 | 1 | 2274 | 2362 | 517841618 | 517841697 | 6.050000e-14 | 89.8 |
17 | TraesCS5B01G479100 | chr5D | 97.297 | 37 | 1 | 0 | 3126 | 3162 | 517842539 | 517842575 | 3.670000e-06 | 63.9 |
18 | TraesCS5B01G479100 | chr5A | 91.924 | 1585 | 71 | 31 | 2274 | 3838 | 645262156 | 645263703 | 0.000000e+00 | 2165.0 |
19 | TraesCS5B01G479100 | chr5A | 93.079 | 838 | 45 | 4 | 1607 | 2442 | 645261569 | 645262395 | 0.000000e+00 | 1214.0 |
20 | TraesCS5B01G479100 | chr5A | 93.248 | 785 | 47 | 5 | 815 | 1595 | 645260804 | 645261586 | 0.000000e+00 | 1151.0 |
21 | TraesCS5B01G479100 | chr5A | 93.843 | 536 | 19 | 6 | 294 | 817 | 645259833 | 645260366 | 0.000000e+00 | 795.0 |
22 | TraesCS5B01G479100 | chr5A | 87.865 | 445 | 32 | 12 | 3837 | 4271 | 645263763 | 645264195 | 1.820000e-138 | 503.0 |
23 | TraesCS5B01G479100 | chr5A | 86.486 | 259 | 23 | 10 | 1 | 250 | 645259582 | 645259837 | 1.560000e-69 | 274.0 |
24 | TraesCS5B01G479100 | chr5A | 92.547 | 161 | 11 | 1 | 2363 | 2523 | 645262156 | 645262315 | 3.420000e-56 | 230.0 |
25 | TraesCS5B01G479100 | chr5A | 91.124 | 169 | 6 | 1 | 2194 | 2362 | 645262236 | 645262395 | 2.060000e-53 | 220.0 |
26 | TraesCS5B01G479100 | chr5A | 89.474 | 152 | 14 | 2 | 1090 | 1240 | 315494733 | 315494883 | 1.610000e-44 | 191.0 |
27 | TraesCS5B01G479100 | chr5A | 89.062 | 128 | 14 | 0 | 2598 | 2725 | 315495850 | 315495977 | 4.550000e-35 | 159.0 |
28 | TraesCS5B01G479100 | chr5A | 100.000 | 79 | 0 | 0 | 2194 | 2272 | 645262316 | 645262394 | 3.540000e-31 | 147.0 |
29 | TraesCS5B01G479100 | chr5A | 93.827 | 81 | 4 | 1 | 2443 | 2523 | 645262156 | 645262235 | 2.140000e-23 | 121.0 |
30 | TraesCS5B01G479100 | chr3A | 92.073 | 164 | 13 | 0 | 1081 | 1244 | 584276534 | 584276697 | 9.500000e-57 | 231.0 |
31 | TraesCS5B01G479100 | chr3D | 91.463 | 164 | 14 | 0 | 1081 | 1244 | 443258969 | 443259132 | 4.420000e-55 | 226.0 |
32 | TraesCS5B01G479100 | chr3B | 90.854 | 164 | 15 | 0 | 1081 | 1244 | 581026438 | 581026601 | 2.060000e-53 | 220.0 |
33 | TraesCS5B01G479100 | chr3B | 91.473 | 129 | 11 | 0 | 2599 | 2727 | 581029962 | 581030090 | 1.250000e-40 | 178.0 |
34 | TraesCS5B01G479100 | chr1D | 90.854 | 164 | 15 | 0 | 1081 | 1244 | 403238768 | 403238605 | 2.060000e-53 | 220.0 |
35 | TraesCS5B01G479100 | chr1B | 90.854 | 164 | 15 | 0 | 1081 | 1244 | 541469864 | 541469701 | 2.060000e-53 | 220.0 |
36 | TraesCS5B01G479100 | chr1A | 90.854 | 164 | 15 | 0 | 1081 | 1244 | 498454134 | 498453971 | 2.060000e-53 | 220.0 |
37 | TraesCS5B01G479100 | chr2D | 92.254 | 142 | 11 | 0 | 2590 | 2731 | 277680323 | 277680464 | 7.450000e-48 | 202.0 |
38 | TraesCS5B01G479100 | chr2A | 92.806 | 139 | 10 | 0 | 2593 | 2731 | 293936397 | 293936259 | 7.450000e-48 | 202.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G479100 | chr5B | 650545112 | 650549502 | 4390 | False | 1357.285714 | 8109 | 94.687143 | 1 | 4391 | 7 | chr5B.!!$F2 | 4390 |
1 | TraesCS5B01G479100 | chr5D | 517839476 | 517843698 | 4222 | False | 644.188889 | 2180 | 91.955111 | 81 | 4180 | 9 | chr5D.!!$F1 | 4099 |
2 | TraesCS5B01G479100 | chr5A | 645259582 | 645264195 | 4613 | False | 682.000000 | 2165 | 92.394300 | 1 | 4271 | 10 | chr5A.!!$F2 | 4270 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
164 | 174 | 0.243636 | GGGACATCCAAACCAAAGCG | 59.756 | 55.0 | 0.00 | 0.0 | 37.91 | 4.68 | F |
618 | 639 | 0.257616 | CTCTCCCCCTTCTCTCTCGT | 59.742 | 60.0 | 0.00 | 0.0 | 0.00 | 4.18 | F |
1833 | 2305 | 0.744771 | GCCACTACAACCAGCTAGCC | 60.745 | 60.0 | 12.13 | 0.0 | 0.00 | 3.93 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1173 | 1636 | 1.290134 | AGAGGATGGTGGTCTTTCCC | 58.710 | 55.000 | 0.00 | 0.0 | 34.77 | 3.97 | R |
2178 | 2712 | 2.287788 | ACAATTCAGTTTCAAGGCGCAG | 60.288 | 45.455 | 10.83 | 0.0 | 0.00 | 5.18 | R |
3805 | 4654 | 0.314935 | GTCTTTGCCATGTGGGTGTG | 59.685 | 55.000 | 0.54 | 0.0 | 39.65 | 3.82 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 0.518636 | CTCACCAATGACGCTTGTGG | 59.481 | 55.000 | 0.00 | 0.00 | 37.17 | 4.17 |
32 | 33 | 0.322008 | GCTTGTGGAAGGAGACCCTG | 60.322 | 60.000 | 0.00 | 0.00 | 43.48 | 4.45 |
44 | 45 | 2.036256 | ACCCTGTCCATGGCAAGC | 59.964 | 61.111 | 6.96 | 0.00 | 0.00 | 4.01 |
60 | 61 | 2.619074 | GCAAGCCTAGATCACCACCTTT | 60.619 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
65 | 66 | 3.181470 | GCCTAGATCACCACCTTTCTCTC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
106 | 108 | 2.039613 | AGAAAGGAGACCAAGGCAAGAG | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
108 | 110 | 1.130054 | AGGAGACCAAGGCAAGAGCA | 61.130 | 55.000 | 0.00 | 0.00 | 44.61 | 4.26 |
113 | 115 | 0.829182 | ACCAAGGCAAGAGCAAAGGG | 60.829 | 55.000 | 0.00 | 0.00 | 44.61 | 3.95 |
120 | 122 | 1.335051 | GCAAGAGCAAAGGGAACGAAC | 60.335 | 52.381 | 0.00 | 0.00 | 41.58 | 3.95 |
122 | 124 | 2.554032 | CAAGAGCAAAGGGAACGAACAT | 59.446 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
124 | 126 | 1.880027 | GAGCAAAGGGAACGAACATGT | 59.120 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
125 | 127 | 2.293399 | GAGCAAAGGGAACGAACATGTT | 59.707 | 45.455 | 11.78 | 11.78 | 34.02 | 2.71 |
138 | 148 | 1.003355 | CATGTTGGGAGTGGCGACT | 60.003 | 57.895 | 0.00 | 0.00 | 33.98 | 4.18 |
143 | 153 | 1.066430 | GTTGGGAGTGGCGACTATGAA | 60.066 | 52.381 | 0.00 | 0.00 | 30.16 | 2.57 |
164 | 174 | 0.243636 | GGGACATCCAAACCAAAGCG | 59.756 | 55.000 | 0.00 | 0.00 | 37.91 | 4.68 |
173 | 183 | 4.643463 | TCCAAACCAAAGCGACTAATACA | 58.357 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
184 | 194 | 2.292569 | CGACTAATACAGGCTCGCCTAA | 59.707 | 50.000 | 10.61 | 2.34 | 46.28 | 2.69 |
227 | 237 | 3.195698 | GTTCCCAGTCGCGATGGC | 61.196 | 66.667 | 23.79 | 9.18 | 36.43 | 4.40 |
253 | 263 | 2.610438 | ATCAACATTTCCTGTGGGCT | 57.390 | 45.000 | 0.00 | 0.00 | 38.39 | 5.19 |
269 | 279 | 6.313519 | TGTGGGCTTAGAGTTTTATGAGAT | 57.686 | 37.500 | 0.00 | 0.00 | 0.00 | 2.75 |
270 | 280 | 7.419057 | CCTGTGGGCTTAGAGTTTTATGAGATA | 60.419 | 40.741 | 0.00 | 0.00 | 0.00 | 1.98 |
271 | 281 | 7.272978 | TGTGGGCTTAGAGTTTTATGAGATAC | 58.727 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
272 | 282 | 7.125811 | TGTGGGCTTAGAGTTTTATGAGATACT | 59.874 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
273 | 283 | 7.654116 | GTGGGCTTAGAGTTTTATGAGATACTC | 59.346 | 40.741 | 0.00 | 0.00 | 37.79 | 2.59 |
274 | 284 | 7.156000 | GGGCTTAGAGTTTTATGAGATACTCC | 58.844 | 42.308 | 0.00 | 0.00 | 38.17 | 3.85 |
306 | 316 | 3.926616 | ACGGTATTCTGTGTCTTTCTGG | 58.073 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
309 | 319 | 4.994852 | CGGTATTCTGTGTCTTTCTGGAAA | 59.005 | 41.667 | 0.00 | 0.00 | 0.00 | 3.13 |
434 | 449 | 5.501156 | AGAAAAGGTGAGCGAGGAAATTAT | 58.499 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
570 | 585 | 1.552226 | CCTCGCGTCGCTTAAATACA | 58.448 | 50.000 | 16.36 | 0.00 | 0.00 | 2.29 |
618 | 639 | 0.257616 | CTCTCCCCCTTCTCTCTCGT | 59.742 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
787 | 810 | 3.060020 | GCGAGATCCGTCCGTTCCA | 62.060 | 63.158 | 5.66 | 0.00 | 41.15 | 3.53 |
851 | 1314 | 1.604593 | GGGATCCATGGCCATTCCG | 60.605 | 63.158 | 23.01 | 10.99 | 37.80 | 4.30 |
957 | 1420 | 4.090588 | TGATCCCGTGGCCGTTCC | 62.091 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
1007 | 1470 | 5.542779 | GTGTAGATCTAGCGAAATGGGATT | 58.457 | 41.667 | 1.64 | 0.00 | 0.00 | 3.01 |
1052 | 1515 | 1.673665 | CTGTGTTGCAGGAGAGGCC | 60.674 | 63.158 | 0.00 | 0.00 | 41.42 | 5.19 |
1403 | 1870 | 8.848474 | TTGCCTAAATAACTGCTAGAATATCC | 57.152 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
1413 | 1880 | 7.468141 | ACTGCTAGAATATCCAATATGACGA | 57.532 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1426 | 1893 | 8.089625 | TCCAATATGACGATATCAATGGGTAT | 57.910 | 34.615 | 3.12 | 0.00 | 41.93 | 2.73 |
1469 | 1937 | 9.758651 | AAAAATGGTTAGGTAGTTTTGTTCATC | 57.241 | 29.630 | 0.00 | 0.00 | 0.00 | 2.92 |
1487 | 1955 | 1.649321 | TCAGGATCTCTGTGCAGGTT | 58.351 | 50.000 | 9.98 | 0.00 | 43.76 | 3.50 |
1514 | 1985 | 6.525629 | GGGTAGTGCACTTATGTTCATAGAT | 58.474 | 40.000 | 27.06 | 0.00 | 0.00 | 1.98 |
1541 | 2012 | 7.915293 | ATATATGGACAAAACGACAGACAAA | 57.085 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1599 | 2070 | 9.947433 | TTATAACCATATAAACATAAGACCCCG | 57.053 | 33.333 | 0.00 | 0.00 | 32.36 | 5.73 |
1600 | 2071 | 4.648651 | ACCATATAAACATAAGACCCCGC | 58.351 | 43.478 | 0.00 | 0.00 | 0.00 | 6.13 |
1601 | 2072 | 4.103469 | ACCATATAAACATAAGACCCCGCA | 59.897 | 41.667 | 0.00 | 0.00 | 0.00 | 5.69 |
1602 | 2073 | 5.067273 | CCATATAAACATAAGACCCCGCAA | 58.933 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
1603 | 2074 | 5.533154 | CCATATAAACATAAGACCCCGCAAA | 59.467 | 40.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1604 | 2075 | 6.039941 | CCATATAAACATAAGACCCCGCAAAA | 59.960 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
1605 | 2076 | 5.986501 | ATAAACATAAGACCCCGCAAAAA | 57.013 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
1650 | 2121 | 1.794714 | TCCTGGGCTAGATGTCCTTC | 58.205 | 55.000 | 0.00 | 0.00 | 42.07 | 3.46 |
1654 | 2125 | 1.686325 | GGGCTAGATGTCCTTCGGCA | 61.686 | 60.000 | 0.00 | 0.00 | 37.49 | 5.69 |
1713 | 2184 | 3.317603 | AACAAATGCCTACATGCCAAC | 57.682 | 42.857 | 0.00 | 0.00 | 36.36 | 3.77 |
1716 | 2187 | 0.819582 | AATGCCTACATGCCAACAGC | 59.180 | 50.000 | 0.00 | 0.00 | 44.14 | 4.40 |
1833 | 2305 | 0.744771 | GCCACTACAACCAGCTAGCC | 60.745 | 60.000 | 12.13 | 0.00 | 0.00 | 3.93 |
1897 | 2369 | 6.258507 | CCTTTTGTAAATTGACTGCTTGCTTT | 59.741 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
1899 | 2371 | 5.512753 | TGTAAATTGACTGCTTGCTTTGA | 57.487 | 34.783 | 0.00 | 0.00 | 0.00 | 2.69 |
1917 | 2389 | 8.694581 | TGCTTTGAATGTCATTGGATGATATA | 57.305 | 30.769 | 1.88 | 0.00 | 39.74 | 0.86 |
1978 | 2450 | 2.819608 | GTGCTAAAAGGCAAGACCATCA | 59.180 | 45.455 | 0.00 | 0.00 | 44.18 | 3.07 |
2048 | 2582 | 7.495279 | ACATTTGTTAATCTGCAACACATGTTT | 59.505 | 29.630 | 12.34 | 0.00 | 46.97 | 2.83 |
2055 | 2589 | 2.020720 | TGCAACACATGTTTTCTCCGT | 58.979 | 42.857 | 0.00 | 0.00 | 35.83 | 4.69 |
2229 | 2763 | 6.485830 | AGTACCTGCAATGTATGATGTACT | 57.514 | 37.500 | 0.00 | 0.00 | 35.81 | 2.73 |
2242 | 2776 | 8.392372 | TGTATGATGTACTAGTATCTCACACC | 57.608 | 38.462 | 16.90 | 2.91 | 0.00 | 4.16 |
2299 | 2833 | 9.855021 | GAATTGTTTTTATAGTACCTGCAATGT | 57.145 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
2307 | 2841 | 9.899661 | TTTATAGTACCTGCAATGTAATGAACT | 57.100 | 29.630 | 6.34 | 1.49 | 0.00 | 3.01 |
2311 | 2845 | 8.213518 | AGTACCTGCAATGTAATGAACTAATG | 57.786 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
2312 | 2846 | 8.046708 | AGTACCTGCAATGTAATGAACTAATGA | 58.953 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2313 | 2847 | 7.886629 | ACCTGCAATGTAATGAACTAATGAT | 57.113 | 32.000 | 0.00 | 0.00 | 0.00 | 2.45 |
2314 | 2848 | 7.709947 | ACCTGCAATGTAATGAACTAATGATG | 58.290 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
2315 | 2849 | 7.340232 | ACCTGCAATGTAATGAACTAATGATGT | 59.660 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2316 | 2850 | 8.839343 | CCTGCAATGTAATGAACTAATGATGTA | 58.161 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2317 | 2851 | 9.655769 | CTGCAATGTAATGAACTAATGATGTAC | 57.344 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2318 | 2852 | 9.394767 | TGCAATGTAATGAACTAATGATGTACT | 57.605 | 29.630 | 0.00 | 0.00 | 0.00 | 2.73 |
2331 | 2865 | 9.069082 | ACTAATGATGTACTAGTATCTCACACC | 57.931 | 37.037 | 15.58 | 0.81 | 0.00 | 4.16 |
2332 | 2866 | 9.290988 | CTAATGATGTACTAGTATCTCACACCT | 57.709 | 37.037 | 15.58 | 7.21 | 0.00 | 4.00 |
2334 | 2868 | 9.642343 | AATGATGTACTAGTATCTCACACCTAA | 57.358 | 33.333 | 15.58 | 0.00 | 0.00 | 2.69 |
2335 | 2869 | 9.815306 | ATGATGTACTAGTATCTCACACCTAAT | 57.185 | 33.333 | 15.58 | 1.37 | 0.00 | 1.73 |
2336 | 2870 | 9.642343 | TGATGTACTAGTATCTCACACCTAATT | 57.358 | 33.333 | 5.75 | 0.00 | 0.00 | 1.40 |
2339 | 2873 | 9.696572 | TGTACTAGTATCTCACACCTAATTTCT | 57.303 | 33.333 | 5.75 | 0.00 | 0.00 | 2.52 |
2348 | 2882 | 8.141298 | TCTCACACCTAATTTCTAATACACCA | 57.859 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
2349 | 2883 | 8.768397 | TCTCACACCTAATTTCTAATACACCAT | 58.232 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2350 | 2884 | 8.731275 | TCACACCTAATTTCTAATACACCATG | 57.269 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
2351 | 2885 | 7.773224 | TCACACCTAATTTCTAATACACCATGG | 59.227 | 37.037 | 11.19 | 11.19 | 0.00 | 3.66 |
2352 | 2886 | 7.773224 | CACACCTAATTTCTAATACACCATGGA | 59.227 | 37.037 | 21.47 | 0.00 | 0.00 | 3.41 |
2353 | 2887 | 8.333235 | ACACCTAATTTCTAATACACCATGGAA | 58.667 | 33.333 | 21.47 | 3.43 | 0.00 | 3.53 |
2354 | 2888 | 8.621286 | CACCTAATTTCTAATACACCATGGAAC | 58.379 | 37.037 | 21.47 | 0.00 | 0.00 | 3.62 |
2383 | 2917 | 6.327279 | AGGAATTGTTTTTGTAGTACCTGC | 57.673 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
2384 | 2918 | 5.830991 | AGGAATTGTTTTTGTAGTACCTGCA | 59.169 | 36.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2385 | 2919 | 6.322712 | AGGAATTGTTTTTGTAGTACCTGCAA | 59.677 | 34.615 | 0.00 | 0.00 | 34.54 | 4.08 |
2386 | 2920 | 7.015195 | AGGAATTGTTTTTGTAGTACCTGCAAT | 59.985 | 33.333 | 0.00 | 0.00 | 36.13 | 3.56 |
2387 | 2921 | 8.301002 | GGAATTGTTTTTGTAGTACCTGCAATA | 58.699 | 33.333 | 0.00 | 0.00 | 36.13 | 1.90 |
2398 | 2932 | 9.309224 | TGTAGTACCTGCAATATATGATGTACT | 57.691 | 33.333 | 13.62 | 13.62 | 39.87 | 2.73 |
2727 | 3261 | 3.464907 | CACAGGATGCTGAATGAGGTAG | 58.535 | 50.000 | 22.24 | 0.00 | 42.53 | 3.18 |
2741 | 3275 | 8.824756 | TGAATGAGGTAGATTCTTACACTACT | 57.175 | 34.615 | 0.00 | 0.00 | 37.32 | 2.57 |
2745 | 3279 | 8.645814 | TGAGGTAGATTCTTACACTACTCAAA | 57.354 | 34.615 | 0.00 | 0.00 | 37.32 | 2.69 |
2991 | 3525 | 9.897744 | TGCTTGTCTTTTCTGTATTTTAAGATG | 57.102 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
3121 | 3658 | 6.804677 | TGGCTTGGTAATGCATATTGTTTAG | 58.195 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
3265 | 4053 | 5.998454 | CAAGGTATGCATAGACTTCCTTG | 57.002 | 43.478 | 26.23 | 26.23 | 42.40 | 3.61 |
3277 | 4068 | 2.544267 | GACTTCCTTGTCGGTTGTCTTG | 59.456 | 50.000 | 0.00 | 0.00 | 35.14 | 3.02 |
3285 | 4076 | 4.349663 | TGTCGGTTGTCTTGAAAACTTG | 57.650 | 40.909 | 3.99 | 0.00 | 0.00 | 3.16 |
3322 | 4161 | 2.675519 | GCAGTCTCCATCTGCGAAG | 58.324 | 57.895 | 2.28 | 0.00 | 46.39 | 3.79 |
3326 | 4165 | 2.414481 | CAGTCTCCATCTGCGAAGTTTG | 59.586 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
3334 | 4173 | 4.675114 | CCATCTGCGAAGTTTGTTTACAAC | 59.325 | 41.667 | 0.00 | 0.00 | 35.28 | 3.32 |
3359 | 4198 | 5.768317 | ACTTGTTTGTCGGTTGATTAATGG | 58.232 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
3377 | 4217 | 1.269174 | TGGCATCCATTTGAACGTGTG | 59.731 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
3527 | 4367 | 5.412594 | TGTGTATTTTCCTGAGATCAACAGC | 59.587 | 40.000 | 12.47 | 1.47 | 34.47 | 4.40 |
3601 | 4441 | 7.175104 | TGTATTTTGAGCCCTAAGATGTTTCT | 58.825 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
3602 | 4442 | 7.669722 | TGTATTTTGAGCCCTAAGATGTTTCTT | 59.330 | 33.333 | 0.00 | 0.00 | 44.44 | 2.52 |
3603 | 4443 | 6.575162 | TTTTGAGCCCTAAGATGTTTCTTC | 57.425 | 37.500 | 0.00 | 0.00 | 41.36 | 2.87 |
3652 | 4492 | 8.500773 | TCCTGTTCAATTTCGTAATAAGTGTTC | 58.499 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3662 | 4510 | 5.580691 | TCGTAATAAGTGTTCCAAGCATCTG | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3666 | 4514 | 2.775890 | AGTGTTCCAAGCATCTGTCTG | 58.224 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
3700 | 4549 | 5.787380 | CCTGTATATATTCAGCACTGCTCA | 58.213 | 41.667 | 12.58 | 0.00 | 36.40 | 4.26 |
3722 | 4571 | 6.417327 | TCAACTTTTATTTGCGCATTTGTTG | 58.583 | 32.000 | 12.75 | 18.12 | 34.31 | 3.33 |
3735 | 4584 | 1.698506 | TTTGTTGGTAGCACTTGGGG | 58.301 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
3744 | 4593 | 3.454812 | GGTAGCACTTGGGGAAGAAGATA | 59.545 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
3745 | 4594 | 4.080526 | GGTAGCACTTGGGGAAGAAGATAA | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
3746 | 4595 | 4.227864 | AGCACTTGGGGAAGAAGATAAG | 57.772 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
3763 | 4612 | 9.685828 | AGAAGATAAGAGTACGATATGCTTTTC | 57.314 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3764 | 4613 | 9.464714 | GAAGATAAGAGTACGATATGCTTTTCA | 57.535 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
3765 | 4614 | 8.804688 | AGATAAGAGTACGATATGCTTTTCAC | 57.195 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
3766 | 4615 | 8.414003 | AGATAAGAGTACGATATGCTTTTCACA | 58.586 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
3767 | 4616 | 9.197694 | GATAAGAGTACGATATGCTTTTCACAT | 57.802 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
3768 | 4617 | 7.849804 | AAGAGTACGATATGCTTTTCACATT | 57.150 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3769 | 4618 | 8.942338 | AAGAGTACGATATGCTTTTCACATTA | 57.058 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
3770 | 4619 | 8.354011 | AGAGTACGATATGCTTTTCACATTAC | 57.646 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
3792 | 4641 | 5.759059 | ACTTTGATGAGGATAAGCATGGAA | 58.241 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
3804 | 4653 | 2.358939 | GCATGGAACTGCTCAAAAGG | 57.641 | 50.000 | 0.00 | 0.00 | 39.12 | 3.11 |
3805 | 4654 | 1.670967 | GCATGGAACTGCTCAAAAGGC | 60.671 | 52.381 | 0.00 | 0.00 | 39.12 | 4.35 |
3806 | 4655 | 1.614903 | CATGGAACTGCTCAAAAGGCA | 59.385 | 47.619 | 0.00 | 0.00 | 38.10 | 4.75 |
3807 | 4656 | 1.032014 | TGGAACTGCTCAAAAGGCAC | 58.968 | 50.000 | 0.00 | 0.00 | 35.71 | 5.01 |
3808 | 4657 | 1.032014 | GGAACTGCTCAAAAGGCACA | 58.968 | 50.000 | 0.00 | 0.00 | 35.71 | 4.57 |
3810 | 4659 | 0.746659 | AACTGCTCAAAAGGCACACC | 59.253 | 50.000 | 0.00 | 0.00 | 35.71 | 4.16 |
3813 | 4662 | 1.363807 | GCTCAAAAGGCACACCCAC | 59.636 | 57.895 | 0.00 | 0.00 | 36.11 | 4.61 |
3815 | 4664 | 1.331214 | CTCAAAAGGCACACCCACAT | 58.669 | 50.000 | 0.00 | 0.00 | 36.11 | 3.21 |
3816 | 4665 | 1.000060 | CTCAAAAGGCACACCCACATG | 60.000 | 52.381 | 0.00 | 0.00 | 36.11 | 3.21 |
3818 | 4667 | 1.757423 | AAAAGGCACACCCACATGGC | 61.757 | 55.000 | 0.00 | 0.00 | 41.52 | 4.40 |
3819 | 4668 | 2.943369 | AAAGGCACACCCACATGGCA | 62.943 | 55.000 | 0.00 | 0.00 | 43.55 | 4.92 |
3833 | 4695 | 2.154462 | CATGGCAAAGACGAGAAGGTT | 58.846 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
3858 | 4789 | 7.784037 | TCCTTAAGTCGGCATACAAAGTTATA | 58.216 | 34.615 | 0.97 | 0.00 | 0.00 | 0.98 |
3870 | 4801 | 4.839121 | ACAAAGTTATAATCAGGTGCGGA | 58.161 | 39.130 | 0.00 | 0.00 | 0.00 | 5.54 |
3905 | 4836 | 3.131400 | AGTTAGGAGCTCGATCTGGAAAC | 59.869 | 47.826 | 7.83 | 1.62 | 0.00 | 2.78 |
3958 | 4889 | 2.425143 | ATGTGGCGAAACATCATCCT | 57.575 | 45.000 | 0.00 | 0.00 | 35.92 | 3.24 |
3974 | 4905 | 2.983402 | TCCTTCGCGTAGGAATATCG | 57.017 | 50.000 | 29.46 | 4.41 | 41.33 | 2.92 |
3975 | 4906 | 1.068748 | TCCTTCGCGTAGGAATATCGC | 60.069 | 52.381 | 29.46 | 0.00 | 41.33 | 4.58 |
3976 | 4907 | 1.068472 | CCTTCGCGTAGGAATATCGCT | 60.068 | 52.381 | 25.94 | 0.00 | 46.31 | 4.93 |
3979 | 4910 | 1.129998 | TCGCGTAGGAATATCGCTAGC | 59.870 | 52.381 | 5.77 | 4.06 | 46.31 | 3.42 |
3980 | 4911 | 1.130749 | CGCGTAGGAATATCGCTAGCT | 59.869 | 52.381 | 13.93 | 0.00 | 46.31 | 3.32 |
4031 | 4962 | 2.436646 | CGTGCGGCCTTGAGGAAT | 60.437 | 61.111 | 0.00 | 0.00 | 37.39 | 3.01 |
4033 | 4964 | 0.742990 | CGTGCGGCCTTGAGGAATAA | 60.743 | 55.000 | 0.00 | 0.00 | 37.39 | 1.40 |
4034 | 4965 | 1.680338 | GTGCGGCCTTGAGGAATAAT | 58.320 | 50.000 | 0.00 | 0.00 | 37.39 | 1.28 |
4064 | 5002 | 4.681781 | CGATCTCCACCTGAATAACTTGCT | 60.682 | 45.833 | 0.00 | 0.00 | 0.00 | 3.91 |
4180 | 5125 | 2.125350 | CACCTTCCAGCTCTCGGC | 60.125 | 66.667 | 0.00 | 0.00 | 42.19 | 5.54 |
4216 | 5161 | 5.862678 | TGGTCGGAATTATACTCATCACA | 57.137 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
4218 | 5163 | 7.533289 | TGGTCGGAATTATACTCATCACATA | 57.467 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4262 | 5210 | 1.002134 | CAAGGGAAGCCACGACCAT | 60.002 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
4271 | 5219 | 0.178068 | GCCACGACCATAGGTGATGT | 59.822 | 55.000 | 0.00 | 0.00 | 35.25 | 3.06 |
4272 | 5220 | 1.406887 | GCCACGACCATAGGTGATGTT | 60.407 | 52.381 | 0.00 | 0.00 | 35.25 | 2.71 |
4273 | 5221 | 2.279741 | CCACGACCATAGGTGATGTTG | 58.720 | 52.381 | 0.00 | 0.00 | 35.25 | 3.33 |
4274 | 5222 | 2.093711 | CCACGACCATAGGTGATGTTGA | 60.094 | 50.000 | 0.00 | 0.00 | 35.25 | 3.18 |
4275 | 5223 | 3.595173 | CACGACCATAGGTGATGTTGAA | 58.405 | 45.455 | 0.00 | 0.00 | 35.25 | 2.69 |
4276 | 5224 | 4.191544 | CACGACCATAGGTGATGTTGAAT | 58.808 | 43.478 | 0.00 | 0.00 | 35.25 | 2.57 |
4277 | 5225 | 4.034394 | CACGACCATAGGTGATGTTGAATG | 59.966 | 45.833 | 0.00 | 0.00 | 35.25 | 2.67 |
4278 | 5226 | 4.191544 | CGACCATAGGTGATGTTGAATGT | 58.808 | 43.478 | 0.00 | 0.00 | 35.25 | 2.71 |
4279 | 5227 | 4.271049 | CGACCATAGGTGATGTTGAATGTC | 59.729 | 45.833 | 0.00 | 0.00 | 35.25 | 3.06 |
4280 | 5228 | 5.431765 | GACCATAGGTGATGTTGAATGTCT | 58.568 | 41.667 | 0.00 | 0.00 | 35.25 | 3.41 |
4281 | 5229 | 5.819991 | ACCATAGGTGATGTTGAATGTCTT | 58.180 | 37.500 | 0.00 | 0.00 | 32.98 | 3.01 |
4282 | 5230 | 6.248433 | ACCATAGGTGATGTTGAATGTCTTT | 58.752 | 36.000 | 0.00 | 0.00 | 32.98 | 2.52 |
4283 | 5231 | 6.721208 | ACCATAGGTGATGTTGAATGTCTTTT | 59.279 | 34.615 | 0.00 | 0.00 | 32.98 | 2.27 |
4284 | 5232 | 7.233348 | ACCATAGGTGATGTTGAATGTCTTTTT | 59.767 | 33.333 | 0.00 | 0.00 | 32.98 | 1.94 |
4317 | 5265 | 2.652313 | TTTTTGCGGGGAGGTGATG | 58.348 | 52.632 | 0.00 | 0.00 | 0.00 | 3.07 |
4318 | 5266 | 1.531739 | TTTTTGCGGGGAGGTGATGC | 61.532 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
4319 | 5267 | 2.424842 | TTTTGCGGGGAGGTGATGCT | 62.425 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
4320 | 5268 | 3.626996 | TTGCGGGGAGGTGATGCTG | 62.627 | 63.158 | 0.00 | 0.00 | 0.00 | 4.41 |
4321 | 5269 | 3.785859 | GCGGGGAGGTGATGCTGA | 61.786 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
4322 | 5270 | 2.989639 | CGGGGAGGTGATGCTGAA | 59.010 | 61.111 | 0.00 | 0.00 | 0.00 | 3.02 |
4323 | 5271 | 1.528824 | CGGGGAGGTGATGCTGAAT | 59.471 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
4324 | 5272 | 0.816825 | CGGGGAGGTGATGCTGAATG | 60.817 | 60.000 | 0.00 | 0.00 | 0.00 | 2.67 |
4325 | 5273 | 0.257039 | GGGGAGGTGATGCTGAATGT | 59.743 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4326 | 5274 | 1.673168 | GGGAGGTGATGCTGAATGTC | 58.327 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4327 | 5275 | 1.293924 | GGAGGTGATGCTGAATGTCG | 58.706 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4328 | 5276 | 1.134699 | GGAGGTGATGCTGAATGTCGA | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
4329 | 5277 | 1.929836 | GAGGTGATGCTGAATGTCGAC | 59.070 | 52.381 | 9.11 | 9.11 | 0.00 | 4.20 |
4330 | 5278 | 0.647410 | GGTGATGCTGAATGTCGACG | 59.353 | 55.000 | 11.62 | 0.00 | 0.00 | 5.12 |
4331 | 5279 | 0.025513 | GTGATGCTGAATGTCGACGC | 59.974 | 55.000 | 11.62 | 8.25 | 0.00 | 5.19 |
4332 | 5280 | 1.083806 | TGATGCTGAATGTCGACGCC | 61.084 | 55.000 | 11.62 | 2.90 | 0.00 | 5.68 |
4333 | 5281 | 1.079197 | ATGCTGAATGTCGACGCCA | 60.079 | 52.632 | 11.62 | 7.55 | 0.00 | 5.69 |
4334 | 5282 | 1.361668 | ATGCTGAATGTCGACGCCAC | 61.362 | 55.000 | 11.62 | 3.15 | 0.00 | 5.01 |
4335 | 5283 | 1.738099 | GCTGAATGTCGACGCCACT | 60.738 | 57.895 | 11.62 | 0.00 | 0.00 | 4.00 |
4336 | 5284 | 1.291877 | GCTGAATGTCGACGCCACTT | 61.292 | 55.000 | 11.62 | 0.00 | 0.00 | 3.16 |
4337 | 5285 | 1.148310 | CTGAATGTCGACGCCACTTT | 58.852 | 50.000 | 11.62 | 0.00 | 0.00 | 2.66 |
4338 | 5286 | 2.333926 | CTGAATGTCGACGCCACTTTA | 58.666 | 47.619 | 11.62 | 0.00 | 0.00 | 1.85 |
4339 | 5287 | 2.930040 | CTGAATGTCGACGCCACTTTAT | 59.070 | 45.455 | 11.62 | 0.00 | 0.00 | 1.40 |
4340 | 5288 | 2.927477 | TGAATGTCGACGCCACTTTATC | 59.073 | 45.455 | 11.62 | 0.00 | 0.00 | 1.75 |
4341 | 5289 | 1.935933 | ATGTCGACGCCACTTTATCC | 58.064 | 50.000 | 11.62 | 0.00 | 0.00 | 2.59 |
4342 | 5290 | 0.108520 | TGTCGACGCCACTTTATCCC | 60.109 | 55.000 | 11.62 | 0.00 | 0.00 | 3.85 |
4343 | 5291 | 0.108520 | GTCGACGCCACTTTATCCCA | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4344 | 5292 | 0.609151 | TCGACGCCACTTTATCCCAA | 59.391 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
4345 | 5293 | 1.002201 | TCGACGCCACTTTATCCCAAA | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
4346 | 5294 | 1.129811 | CGACGCCACTTTATCCCAAAC | 59.870 | 52.381 | 0.00 | 0.00 | 0.00 | 2.93 |
4347 | 5295 | 2.433436 | GACGCCACTTTATCCCAAACT | 58.567 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
4348 | 5296 | 3.602483 | GACGCCACTTTATCCCAAACTA | 58.398 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
4349 | 5297 | 3.606687 | ACGCCACTTTATCCCAAACTAG | 58.393 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
4350 | 5298 | 3.262405 | ACGCCACTTTATCCCAAACTAGA | 59.738 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
4351 | 5299 | 3.871594 | CGCCACTTTATCCCAAACTAGAG | 59.128 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
4352 | 5300 | 4.200092 | GCCACTTTATCCCAAACTAGAGG | 58.800 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
4353 | 5301 | 4.324331 | GCCACTTTATCCCAAACTAGAGGT | 60.324 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
4354 | 5302 | 5.186198 | CCACTTTATCCCAAACTAGAGGTG | 58.814 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
4355 | 5303 | 5.045869 | CCACTTTATCCCAAACTAGAGGTGA | 60.046 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4356 | 5304 | 6.353082 | CCACTTTATCCCAAACTAGAGGTGAT | 60.353 | 42.308 | 0.00 | 3.88 | 0.00 | 3.06 |
4357 | 5305 | 6.540189 | CACTTTATCCCAAACTAGAGGTGATG | 59.460 | 42.308 | 0.00 | 0.00 | 0.00 | 3.07 |
4358 | 5306 | 5.630415 | TTATCCCAAACTAGAGGTGATGG | 57.370 | 43.478 | 0.00 | 0.00 | 36.23 | 3.51 |
4359 | 5307 | 2.717639 | CCCAAACTAGAGGTGATGGG | 57.282 | 55.000 | 0.00 | 0.97 | 44.24 | 4.00 |
4360 | 5308 | 1.212935 | CCCAAACTAGAGGTGATGGGG | 59.787 | 57.143 | 0.00 | 0.00 | 45.11 | 4.96 |
4361 | 5309 | 1.408822 | CCAAACTAGAGGTGATGGGGC | 60.409 | 57.143 | 0.00 | 0.00 | 34.18 | 5.80 |
4362 | 5310 | 0.919710 | AAACTAGAGGTGATGGGGCC | 59.080 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
4363 | 5311 | 0.044855 | AACTAGAGGTGATGGGGCCT | 59.955 | 55.000 | 0.84 | 0.00 | 37.91 | 5.19 |
4364 | 5312 | 0.692419 | ACTAGAGGTGATGGGGCCTG | 60.692 | 60.000 | 0.84 | 0.00 | 34.81 | 4.85 |
4365 | 5313 | 1.384502 | TAGAGGTGATGGGGCCTGG | 60.385 | 63.158 | 0.84 | 0.00 | 34.81 | 4.45 |
4366 | 5314 | 2.914734 | TAGAGGTGATGGGGCCTGGG | 62.915 | 65.000 | 0.84 | 0.00 | 34.81 | 4.45 |
4384 | 5332 | 2.825836 | CCGCATTGCTCAGGGGTC | 60.826 | 66.667 | 7.12 | 0.00 | 33.55 | 4.46 |
4385 | 5333 | 2.270205 | CGCATTGCTCAGGGGTCT | 59.730 | 61.111 | 7.12 | 0.00 | 0.00 | 3.85 |
4386 | 5334 | 2.110967 | CGCATTGCTCAGGGGTCTG | 61.111 | 63.158 | 7.12 | 0.00 | 42.21 | 3.51 |
4387 | 5335 | 2.413142 | GCATTGCTCAGGGGTCTGC | 61.413 | 63.158 | 0.16 | 0.00 | 40.69 | 4.26 |
4388 | 5336 | 1.751927 | CATTGCTCAGGGGTCTGCC | 60.752 | 63.158 | 0.00 | 0.00 | 40.69 | 4.85 |
4389 | 5337 | 1.927527 | ATTGCTCAGGGGTCTGCCT | 60.928 | 57.895 | 0.00 | 0.00 | 40.69 | 4.75 |
4390 | 5338 | 1.504275 | ATTGCTCAGGGGTCTGCCTT | 61.504 | 55.000 | 0.00 | 0.00 | 40.69 | 4.35 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
5 | 6 | 0.523072 | CCTTCCACAAGCGTCATTGG | 59.477 | 55.000 | 2.96 | 0.00 | 34.36 | 3.16 |
20 | 21 | 0.543749 | CCATGGACAGGGTCTCCTTC | 59.456 | 60.000 | 5.56 | 0.00 | 42.67 | 3.46 |
32 | 33 | 1.141657 | TGATCTAGGCTTGCCATGGAC | 59.858 | 52.381 | 18.40 | 7.64 | 0.00 | 4.02 |
44 | 45 | 3.386402 | GGAGAGAAAGGTGGTGATCTAGG | 59.614 | 52.174 | 0.00 | 0.00 | 0.00 | 3.02 |
60 | 61 | 0.039764 | ACACGGGAGACATGGAGAGA | 59.960 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
65 | 66 | 1.676678 | ATCGGACACGGGAGACATGG | 61.677 | 60.000 | 0.00 | 0.00 | 41.39 | 3.66 |
106 | 108 | 2.393764 | CAACATGTTCGTTCCCTTTGC | 58.606 | 47.619 | 8.48 | 0.00 | 0.00 | 3.68 |
108 | 110 | 1.960689 | CCCAACATGTTCGTTCCCTTT | 59.039 | 47.619 | 8.48 | 0.00 | 0.00 | 3.11 |
113 | 115 | 1.535462 | CCACTCCCAACATGTTCGTTC | 59.465 | 52.381 | 8.48 | 0.00 | 0.00 | 3.95 |
120 | 122 | 0.249120 | TAGTCGCCACTCCCAACATG | 59.751 | 55.000 | 0.00 | 0.00 | 33.62 | 3.21 |
122 | 124 | 0.249120 | CATAGTCGCCACTCCCAACA | 59.751 | 55.000 | 0.00 | 0.00 | 33.62 | 3.33 |
124 | 126 | 1.271856 | TTCATAGTCGCCACTCCCAA | 58.728 | 50.000 | 0.00 | 0.00 | 33.62 | 4.12 |
125 | 127 | 1.207089 | CTTTCATAGTCGCCACTCCCA | 59.793 | 52.381 | 0.00 | 0.00 | 33.62 | 4.37 |
138 | 148 | 4.666412 | TGGTTTGGATGTCCCTTTCATA | 57.334 | 40.909 | 0.00 | 0.00 | 35.38 | 2.15 |
143 | 153 | 1.970640 | GCTTTGGTTTGGATGTCCCTT | 59.029 | 47.619 | 0.00 | 0.00 | 35.38 | 3.95 |
184 | 194 | 1.982938 | GAGCCCGGTGTCTACCTGT | 60.983 | 63.158 | 0.00 | 0.00 | 45.22 | 4.00 |
250 | 260 | 7.958088 | AGGAGTATCTCATAAAACTCTAAGCC | 58.042 | 38.462 | 0.00 | 0.00 | 38.69 | 4.35 |
269 | 279 | 9.755804 | CAGAATACCGTATACGATATAGGAGTA | 57.244 | 37.037 | 26.37 | 16.09 | 43.02 | 2.59 |
270 | 280 | 8.263640 | ACAGAATACCGTATACGATATAGGAGT | 58.736 | 37.037 | 26.37 | 14.52 | 43.02 | 3.85 |
271 | 281 | 8.549548 | CACAGAATACCGTATACGATATAGGAG | 58.450 | 40.741 | 26.37 | 12.04 | 43.02 | 3.69 |
272 | 282 | 8.043113 | ACACAGAATACCGTATACGATATAGGA | 58.957 | 37.037 | 26.37 | 6.35 | 43.02 | 2.94 |
273 | 283 | 8.206325 | ACACAGAATACCGTATACGATATAGG | 57.794 | 38.462 | 26.37 | 13.67 | 43.02 | 2.57 |
274 | 284 | 9.096160 | AGACACAGAATACCGTATACGATATAG | 57.904 | 37.037 | 26.37 | 14.28 | 43.02 | 1.31 |
281 | 291 | 6.696148 | CCAGAAAGACACAGAATACCGTATAC | 59.304 | 42.308 | 0.00 | 0.00 | 0.00 | 1.47 |
461 | 476 | 2.100584 | TCCATTGCCCGCAACAATAATC | 59.899 | 45.455 | 3.85 | 0.00 | 38.88 | 1.75 |
618 | 639 | 2.747686 | GGCGGAAACAGGAGGTCA | 59.252 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
759 | 782 | 1.005630 | GGATCTCGCGAATGGAGGG | 60.006 | 63.158 | 11.33 | 0.00 | 32.34 | 4.30 |
957 | 1420 | 4.856801 | CAGATCCGGCCCCCAACG | 62.857 | 72.222 | 0.00 | 0.00 | 0.00 | 4.10 |
986 | 1449 | 5.172205 | GGAATCCCATTTCGCTAGATCTAC | 58.828 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
1052 | 1515 | 3.393970 | TGCTCTTCCTCCCGGCTG | 61.394 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
1131 | 1594 | 1.691434 | AGGATCCGCATCTCCTTCTTC | 59.309 | 52.381 | 5.98 | 0.00 | 38.81 | 2.87 |
1173 | 1636 | 1.290134 | AGAGGATGGTGGTCTTTCCC | 58.710 | 55.000 | 0.00 | 0.00 | 34.77 | 3.97 |
1303 | 1770 | 2.872858 | GTTCCGCTACAGATTCCCAATC | 59.127 | 50.000 | 0.00 | 0.00 | 38.20 | 2.67 |
1403 | 1870 | 8.722480 | ACATACCCATTGATATCGTCATATTG | 57.278 | 34.615 | 0.00 | 0.00 | 36.54 | 1.90 |
1411 | 1878 | 6.697395 | TCCAACTACATACCCATTGATATCG | 58.303 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
1413 | 1880 | 8.218423 | TCATCCAACTACATACCCATTGATAT | 57.782 | 34.615 | 0.00 | 0.00 | 0.00 | 1.63 |
1417 | 1884 | 6.537355 | AGATCATCCAACTACATACCCATTG | 58.463 | 40.000 | 0.00 | 0.00 | 0.00 | 2.82 |
1487 | 1955 | 3.510753 | TGAACATAAGTGCACTACCCGTA | 59.489 | 43.478 | 22.01 | 8.85 | 0.00 | 4.02 |
1523 | 1994 | 4.272504 | TCAGATTTGTCTGTCGTTTTGTCC | 59.727 | 41.667 | 5.45 | 0.00 | 38.75 | 4.02 |
1528 | 1999 | 6.867662 | AAATCTCAGATTTGTCTGTCGTTT | 57.132 | 33.333 | 12.08 | 3.29 | 38.75 | 3.60 |
1541 | 2012 | 7.876936 | ATGCAACAACTGATAAATCTCAGAT | 57.123 | 32.000 | 8.01 | 0.00 | 44.48 | 2.90 |
1545 | 2016 | 8.976986 | AAGAAATGCAACAACTGATAAATCTC | 57.023 | 30.769 | 0.00 | 0.00 | 0.00 | 2.75 |
1553 | 2024 | 9.677567 | GTTATAAGAAAGAAATGCAACAACTGA | 57.322 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
1555 | 2026 | 8.637986 | TGGTTATAAGAAAGAAATGCAACAACT | 58.362 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
1611 | 2082 | 8.531982 | CCCAGGATCGATTTTCTTATGTCTATA | 58.468 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
1612 | 2083 | 7.390027 | CCCAGGATCGATTTTCTTATGTCTAT | 58.610 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
1613 | 2084 | 6.741521 | GCCCAGGATCGATTTTCTTATGTCTA | 60.742 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
1614 | 2085 | 5.615289 | CCCAGGATCGATTTTCTTATGTCT | 58.385 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1615 | 2086 | 4.214332 | GCCCAGGATCGATTTTCTTATGTC | 59.786 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
1616 | 2087 | 4.137543 | GCCCAGGATCGATTTTCTTATGT | 58.862 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
1617 | 2088 | 4.392940 | AGCCCAGGATCGATTTTCTTATG | 58.607 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
1618 | 2089 | 4.713792 | AGCCCAGGATCGATTTTCTTAT | 57.286 | 40.909 | 0.00 | 0.00 | 0.00 | 1.73 |
1630 | 2101 | 2.334023 | GAAGGACATCTAGCCCAGGAT | 58.666 | 52.381 | 0.00 | 0.00 | 0.00 | 3.24 |
1650 | 2121 | 3.982576 | AAAGTAACTGGAACTTTGCCG | 57.017 | 42.857 | 8.32 | 0.00 | 43.66 | 5.69 |
1654 | 2125 | 6.370453 | ACCATACCAAAGTAACTGGAACTTT | 58.630 | 36.000 | 0.00 | 4.42 | 45.64 | 2.66 |
1713 | 2184 | 7.584108 | TGTTTGTTACTATCAATGACTTGCTG | 58.416 | 34.615 | 0.00 | 0.00 | 32.11 | 4.41 |
1742 | 2213 | 3.136443 | TGACTTCCTGTTGGCATATAGGG | 59.864 | 47.826 | 10.95 | 0.65 | 0.00 | 3.53 |
1833 | 2305 | 5.661056 | TCAGTGTACTTTGAGATAGGGTG | 57.339 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
1884 | 2356 | 2.950975 | TGACATTCAAAGCAAGCAGTCA | 59.049 | 40.909 | 0.00 | 0.00 | 32.91 | 3.41 |
1897 | 2369 | 9.917129 | GCAAATTATATCATCCAATGACATTCA | 57.083 | 29.630 | 0.00 | 0.00 | 43.01 | 2.57 |
1899 | 2371 | 8.872134 | TGGCAAATTATATCATCCAATGACATT | 58.128 | 29.630 | 0.00 | 0.00 | 43.01 | 2.71 |
1917 | 2389 | 7.173218 | CACACGAGGATATTATACTGGCAAATT | 59.827 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2008 | 2480 | 5.712152 | AACAAATGTCCAAATCTGACCTC | 57.288 | 39.130 | 0.00 | 0.00 | 31.60 | 3.85 |
2178 | 2712 | 2.287788 | ACAATTCAGTTTCAAGGCGCAG | 60.288 | 45.455 | 10.83 | 0.00 | 0.00 | 5.18 |
2305 | 2839 | 9.069082 | GGTGTGAGATACTAGTACATCATTAGT | 57.931 | 37.037 | 17.44 | 0.00 | 34.36 | 2.24 |
2306 | 2840 | 9.290988 | AGGTGTGAGATACTAGTACATCATTAG | 57.709 | 37.037 | 17.44 | 0.00 | 0.00 | 1.73 |
2308 | 2842 | 9.642343 | TTAGGTGTGAGATACTAGTACATCATT | 57.358 | 33.333 | 17.44 | 9.57 | 0.00 | 2.57 |
2309 | 2843 | 9.815306 | ATTAGGTGTGAGATACTAGTACATCAT | 57.185 | 33.333 | 17.44 | 8.03 | 0.00 | 2.45 |
2310 | 2844 | 9.642343 | AATTAGGTGTGAGATACTAGTACATCA | 57.358 | 33.333 | 4.31 | 9.52 | 0.00 | 3.07 |
2313 | 2847 | 9.696572 | AGAAATTAGGTGTGAGATACTAGTACA | 57.303 | 33.333 | 4.31 | 0.00 | 0.00 | 2.90 |
2322 | 2856 | 8.768397 | TGGTGTATTAGAAATTAGGTGTGAGAT | 58.232 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
2323 | 2857 | 8.141298 | TGGTGTATTAGAAATTAGGTGTGAGA | 57.859 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
2324 | 2858 | 8.830580 | CATGGTGTATTAGAAATTAGGTGTGAG | 58.169 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2325 | 2859 | 7.773224 | CCATGGTGTATTAGAAATTAGGTGTGA | 59.227 | 37.037 | 2.57 | 0.00 | 0.00 | 3.58 |
2326 | 2860 | 7.773224 | TCCATGGTGTATTAGAAATTAGGTGTG | 59.227 | 37.037 | 12.58 | 0.00 | 0.00 | 3.82 |
2327 | 2861 | 7.867921 | TCCATGGTGTATTAGAAATTAGGTGT | 58.132 | 34.615 | 12.58 | 0.00 | 0.00 | 4.16 |
2328 | 2862 | 8.621286 | GTTCCATGGTGTATTAGAAATTAGGTG | 58.379 | 37.037 | 12.58 | 0.00 | 0.00 | 4.00 |
2329 | 2863 | 8.333235 | TGTTCCATGGTGTATTAGAAATTAGGT | 58.667 | 33.333 | 12.58 | 0.00 | 0.00 | 3.08 |
2330 | 2864 | 8.746052 | TGTTCCATGGTGTATTAGAAATTAGG | 57.254 | 34.615 | 12.58 | 0.00 | 0.00 | 2.69 |
2337 | 2871 | 9.387397 | TCCTATATTGTTCCATGGTGTATTAGA | 57.613 | 33.333 | 12.58 | 0.00 | 0.00 | 2.10 |
2340 | 2874 | 9.881773 | AATTCCTATATTGTTCCATGGTGTATT | 57.118 | 29.630 | 12.58 | 0.00 | 0.00 | 1.89 |
2341 | 2875 | 9.300681 | CAATTCCTATATTGTTCCATGGTGTAT | 57.699 | 33.333 | 12.58 | 6.93 | 32.17 | 2.29 |
2342 | 2876 | 8.278639 | ACAATTCCTATATTGTTCCATGGTGTA | 58.721 | 33.333 | 12.58 | 0.00 | 44.18 | 2.90 |
2343 | 2877 | 7.125391 | ACAATTCCTATATTGTTCCATGGTGT | 58.875 | 34.615 | 12.58 | 0.00 | 44.18 | 4.16 |
2344 | 2878 | 7.587037 | ACAATTCCTATATTGTTCCATGGTG | 57.413 | 36.000 | 12.58 | 0.00 | 44.18 | 4.17 |
2357 | 2891 | 9.169592 | GCAGGTACTACAAAAACAATTCCTATA | 57.830 | 33.333 | 0.00 | 0.00 | 36.02 | 1.31 |
2358 | 2892 | 7.668052 | TGCAGGTACTACAAAAACAATTCCTAT | 59.332 | 33.333 | 0.00 | 0.00 | 36.02 | 2.57 |
2359 | 2893 | 6.999272 | TGCAGGTACTACAAAAACAATTCCTA | 59.001 | 34.615 | 0.00 | 0.00 | 36.02 | 2.94 |
2360 | 2894 | 5.830991 | TGCAGGTACTACAAAAACAATTCCT | 59.169 | 36.000 | 0.00 | 0.00 | 36.02 | 3.36 |
2361 | 2895 | 6.079424 | TGCAGGTACTACAAAAACAATTCC | 57.921 | 37.500 | 0.00 | 0.00 | 36.02 | 3.01 |
2362 | 2896 | 9.855021 | ATATTGCAGGTACTACAAAAACAATTC | 57.145 | 29.630 | 0.00 | 0.00 | 45.63 | 2.17 |
2366 | 2900 | 9.674068 | TCATATATTGCAGGTACTACAAAAACA | 57.326 | 29.630 | 0.00 | 0.00 | 45.63 | 2.83 |
2369 | 2903 | 9.845740 | ACATCATATATTGCAGGTACTACAAAA | 57.154 | 29.630 | 0.00 | 0.00 | 45.63 | 2.44 |
2371 | 2905 | 9.923143 | GTACATCATATATTGCAGGTACTACAA | 57.077 | 33.333 | 0.00 | 0.00 | 46.63 | 2.41 |
2372 | 2906 | 9.309224 | AGTACATCATATATTGCAGGTACTACA | 57.691 | 33.333 | 9.99 | 0.00 | 36.02 | 2.74 |
2375 | 2909 | 9.535170 | ACTAGTACATCATATATTGCAGGTACT | 57.465 | 33.333 | 13.82 | 13.82 | 37.10 | 2.73 |
2402 | 2936 | 8.768397 | TGGTGTATTAGAAATTAGGTGTGAGAT | 58.232 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
2407 | 2941 | 7.867921 | TCCATGGTGTATTAGAAATTAGGTGT | 58.132 | 34.615 | 12.58 | 0.00 | 0.00 | 4.16 |
2469 | 3003 | 9.642343 | TTAGGTGTGAGATACTAGTACATCATT | 57.358 | 33.333 | 17.44 | 9.57 | 0.00 | 2.57 |
2727 | 3261 | 6.107343 | GGACCCTTTGAGTAGTGTAAGAATC | 58.893 | 44.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2741 | 3275 | 1.002069 | ATGCAGATGGGACCCTTTGA | 58.998 | 50.000 | 13.00 | 0.00 | 0.00 | 2.69 |
2745 | 3279 | 1.898863 | AGTAATGCAGATGGGACCCT | 58.101 | 50.000 | 13.00 | 0.00 | 0.00 | 4.34 |
2797 | 3331 | 3.206150 | ACCAGTGAACATGTGAACTGTC | 58.794 | 45.455 | 27.02 | 11.67 | 38.68 | 3.51 |
2991 | 3525 | 9.896645 | ATAATGACAAGGATGACCATCATATAC | 57.103 | 33.333 | 11.59 | 1.62 | 37.20 | 1.47 |
3000 | 3534 | 5.239525 | GCCAGTTATAATGACAAGGATGACC | 59.760 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3076 | 3613 | 1.386533 | AGGGCAGCAGATCAATTTCG | 58.613 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3242 | 4029 | 5.431765 | CAAGGAAGTCTATGCATACCTTGT | 58.568 | 41.667 | 28.56 | 10.19 | 44.15 | 3.16 |
3265 | 4053 | 3.105937 | GCAAGTTTTCAAGACAACCGAC | 58.894 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
3359 | 4198 | 1.068333 | AGCACACGTTCAAATGGATGC | 60.068 | 47.619 | 0.00 | 5.15 | 32.95 | 3.91 |
3377 | 4217 | 4.159120 | GACGAAAATTTAGGACTGCAAGC | 58.841 | 43.478 | 0.00 | 0.00 | 37.60 | 4.01 |
3527 | 4367 | 2.811101 | CCGGAGCTGGCTCAGTAG | 59.189 | 66.667 | 21.75 | 10.89 | 44.40 | 2.57 |
3601 | 4441 | 7.727181 | ACTCTCTTTAGCTGTTTACTTCAGAA | 58.273 | 34.615 | 0.00 | 0.00 | 35.20 | 3.02 |
3602 | 4442 | 7.291411 | ACTCTCTTTAGCTGTTTACTTCAGA | 57.709 | 36.000 | 0.00 | 0.00 | 35.20 | 3.27 |
3603 | 4443 | 6.588373 | GGACTCTCTTTAGCTGTTTACTTCAG | 59.412 | 42.308 | 0.00 | 0.00 | 36.18 | 3.02 |
3652 | 4492 | 4.669206 | AGATAGACAGACAGATGCTTGG | 57.331 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
3666 | 4514 | 9.906660 | GCTGAATATATACAGGCATAGATAGAC | 57.093 | 37.037 | 0.00 | 0.00 | 35.05 | 2.59 |
3700 | 4549 | 5.295540 | ACCAACAAATGCGCAAATAAAAGTT | 59.704 | 32.000 | 17.11 | 9.90 | 0.00 | 2.66 |
3722 | 4571 | 1.628846 | TCTTCTTCCCCAAGTGCTACC | 59.371 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
3735 | 4584 | 9.685828 | AAAGCATATCGTACTCTTATCTTCTTC | 57.314 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
3744 | 4593 | 7.849804 | AATGTGAAAAGCATATCGTACTCTT | 57.150 | 32.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3745 | 4594 | 8.198109 | AGTAATGTGAAAAGCATATCGTACTCT | 58.802 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
3746 | 4595 | 8.354011 | AGTAATGTGAAAAGCATATCGTACTC | 57.646 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
3762 | 4611 | 7.337938 | TGCTTATCCTCATCAAAGTAATGTGA | 58.662 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
3763 | 4612 | 7.558161 | TGCTTATCCTCATCAAAGTAATGTG | 57.442 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
3764 | 4613 | 7.230108 | CCATGCTTATCCTCATCAAAGTAATGT | 59.770 | 37.037 | 0.00 | 0.00 | 0.00 | 2.71 |
3765 | 4614 | 7.446319 | TCCATGCTTATCCTCATCAAAGTAATG | 59.554 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
3766 | 4615 | 7.520798 | TCCATGCTTATCCTCATCAAAGTAAT | 58.479 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
3767 | 4616 | 6.899089 | TCCATGCTTATCCTCATCAAAGTAA | 58.101 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3768 | 4617 | 6.499106 | TCCATGCTTATCCTCATCAAAGTA | 57.501 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
3769 | 4618 | 5.378230 | TCCATGCTTATCCTCATCAAAGT | 57.622 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
3770 | 4619 | 5.826737 | AGTTCCATGCTTATCCTCATCAAAG | 59.173 | 40.000 | 0.00 | 0.00 | 0.00 | 2.77 |
3792 | 4641 | 1.109323 | GGGTGTGCCTTTTGAGCAGT | 61.109 | 55.000 | 0.00 | 0.00 | 41.87 | 4.40 |
3802 | 4651 | 2.943369 | TTTGCCATGTGGGTGTGCCT | 62.943 | 55.000 | 0.54 | 0.00 | 39.65 | 4.75 |
3804 | 4653 | 1.005867 | CTTTGCCATGTGGGTGTGC | 60.006 | 57.895 | 0.54 | 0.00 | 39.65 | 4.57 |
3805 | 4654 | 0.314935 | GTCTTTGCCATGTGGGTGTG | 59.685 | 55.000 | 0.54 | 0.00 | 39.65 | 3.82 |
3806 | 4655 | 1.172180 | CGTCTTTGCCATGTGGGTGT | 61.172 | 55.000 | 0.54 | 0.00 | 39.65 | 4.16 |
3807 | 4656 | 0.888736 | TCGTCTTTGCCATGTGGGTG | 60.889 | 55.000 | 0.54 | 0.00 | 39.65 | 4.61 |
3808 | 4657 | 0.606401 | CTCGTCTTTGCCATGTGGGT | 60.606 | 55.000 | 0.54 | 0.00 | 39.65 | 4.51 |
3810 | 4659 | 1.466167 | CTTCTCGTCTTTGCCATGTGG | 59.534 | 52.381 | 0.00 | 0.00 | 38.53 | 4.17 |
3813 | 4662 | 1.813513 | ACCTTCTCGTCTTTGCCATG | 58.186 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
3815 | 4664 | 1.542547 | GGAACCTTCTCGTCTTTGCCA | 60.543 | 52.381 | 0.00 | 0.00 | 0.00 | 4.92 |
3816 | 4665 | 1.157585 | GGAACCTTCTCGTCTTTGCC | 58.842 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
3818 | 4667 | 5.298347 | ACTTAAGGAACCTTCTCGTCTTTG | 58.702 | 41.667 | 9.50 | 0.00 | 37.47 | 2.77 |
3819 | 4668 | 5.539979 | GACTTAAGGAACCTTCTCGTCTTT | 58.460 | 41.667 | 9.50 | 0.00 | 37.47 | 2.52 |
3833 | 4695 | 4.546829 | ACTTTGTATGCCGACTTAAGGA | 57.453 | 40.909 | 7.53 | 0.00 | 0.00 | 3.36 |
3858 | 4789 | 1.683011 | CCTTCCAATCCGCACCTGATT | 60.683 | 52.381 | 0.00 | 0.00 | 32.77 | 2.57 |
3870 | 4801 | 4.538089 | AGCTCCTAACTTTCTCCTTCCAAT | 59.462 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
3905 | 4836 | 2.673523 | CCTCCCTGGGCAGTTCTG | 59.326 | 66.667 | 8.22 | 0.00 | 0.00 | 3.02 |
3974 | 4905 | 3.605749 | TTCCACACCGCCAGCTAGC | 62.606 | 63.158 | 6.62 | 6.62 | 0.00 | 3.42 |
3975 | 4906 | 1.741770 | GTTCCACACCGCCAGCTAG | 60.742 | 63.158 | 0.00 | 0.00 | 0.00 | 3.42 |
3976 | 4907 | 1.764571 | AAGTTCCACACCGCCAGCTA | 61.765 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
3979 | 4910 | 0.817634 | TCAAAGTTCCACACCGCCAG | 60.818 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3980 | 4911 | 0.179004 | ATCAAAGTTCCACACCGCCA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
4023 | 4954 | 4.593206 | AGATCGGGCACTATTATTCCTCAA | 59.407 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
4024 | 4955 | 4.160329 | AGATCGGGCACTATTATTCCTCA | 58.840 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
4025 | 4956 | 4.382147 | GGAGATCGGGCACTATTATTCCTC | 60.382 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4029 | 4960 | 3.008049 | GGTGGAGATCGGGCACTATTATT | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
4031 | 4962 | 1.968493 | GGTGGAGATCGGGCACTATTA | 59.032 | 52.381 | 0.00 | 0.00 | 0.00 | 0.98 |
4033 | 4964 | 0.105453 | AGGTGGAGATCGGGCACTAT | 60.105 | 55.000 | 0.00 | 0.00 | 0.00 | 2.12 |
4034 | 4965 | 1.043116 | CAGGTGGAGATCGGGCACTA | 61.043 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4064 | 5002 | 1.741401 | CGCATCCTCGTTTGCTCCA | 60.741 | 57.895 | 0.00 | 0.00 | 36.71 | 3.86 |
4180 | 5125 | 2.046314 | ACCATTCCCCGACAAGCG | 60.046 | 61.111 | 0.00 | 0.00 | 40.47 | 4.68 |
4181 | 5126 | 2.106683 | CGACCATTCCCCGACAAGC | 61.107 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
4182 | 5127 | 1.449601 | CCGACCATTCCCCGACAAG | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 3.16 |
4183 | 5128 | 1.481901 | TTCCGACCATTCCCCGACAA | 61.482 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4184 | 5129 | 1.268992 | ATTCCGACCATTCCCCGACA | 61.269 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4185 | 5130 | 0.107361 | AATTCCGACCATTCCCCGAC | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4186 | 5131 | 1.498264 | TAATTCCGACCATTCCCCGA | 58.502 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4187 | 5132 | 2.561478 | ATAATTCCGACCATTCCCCG | 57.439 | 50.000 | 0.00 | 0.00 | 0.00 | 5.73 |
4216 | 5161 | 2.250924 | AGGCAGCTTTGTTTGGCTTAT | 58.749 | 42.857 | 0.00 | 0.00 | 46.63 | 1.73 |
4218 | 5163 | 2.519937 | AGGCAGCTTTGTTTGGCTT | 58.480 | 47.368 | 0.00 | 0.00 | 46.63 | 4.35 |
4257 | 5205 | 5.431765 | AGACATTCAACATCACCTATGGTC | 58.568 | 41.667 | 0.00 | 0.00 | 40.16 | 4.02 |
4299 | 5247 | 1.531739 | GCATCACCTCCCCGCAAAAA | 61.532 | 55.000 | 0.00 | 0.00 | 0.00 | 1.94 |
4300 | 5248 | 1.976474 | GCATCACCTCCCCGCAAAA | 60.976 | 57.895 | 0.00 | 0.00 | 0.00 | 2.44 |
4301 | 5249 | 2.361104 | GCATCACCTCCCCGCAAA | 60.361 | 61.111 | 0.00 | 0.00 | 0.00 | 3.68 |
4302 | 5250 | 3.329889 | AGCATCACCTCCCCGCAA | 61.330 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
4303 | 5251 | 4.100084 | CAGCATCACCTCCCCGCA | 62.100 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
4304 | 5252 | 2.615227 | ATTCAGCATCACCTCCCCGC | 62.615 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4305 | 5253 | 0.816825 | CATTCAGCATCACCTCCCCG | 60.817 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
4306 | 5254 | 0.257039 | ACATTCAGCATCACCTCCCC | 59.743 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
4307 | 5255 | 1.673168 | GACATTCAGCATCACCTCCC | 58.327 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4308 | 5256 | 1.134699 | TCGACATTCAGCATCACCTCC | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
4309 | 5257 | 1.929836 | GTCGACATTCAGCATCACCTC | 59.070 | 52.381 | 11.55 | 0.00 | 0.00 | 3.85 |
4310 | 5258 | 1.737029 | CGTCGACATTCAGCATCACCT | 60.737 | 52.381 | 17.16 | 0.00 | 0.00 | 4.00 |
4311 | 5259 | 0.647410 | CGTCGACATTCAGCATCACC | 59.353 | 55.000 | 17.16 | 0.00 | 0.00 | 4.02 |
4312 | 5260 | 0.025513 | GCGTCGACATTCAGCATCAC | 59.974 | 55.000 | 17.16 | 0.00 | 0.00 | 3.06 |
4313 | 5261 | 1.083806 | GGCGTCGACATTCAGCATCA | 61.084 | 55.000 | 17.16 | 0.00 | 0.00 | 3.07 |
4314 | 5262 | 1.083806 | TGGCGTCGACATTCAGCATC | 61.084 | 55.000 | 17.16 | 0.00 | 0.00 | 3.91 |
4315 | 5263 | 1.079197 | TGGCGTCGACATTCAGCAT | 60.079 | 52.632 | 17.16 | 0.00 | 0.00 | 3.79 |
4316 | 5264 | 2.027073 | GTGGCGTCGACATTCAGCA | 61.027 | 57.895 | 17.16 | 0.00 | 0.00 | 4.41 |
4317 | 5265 | 1.291877 | AAGTGGCGTCGACATTCAGC | 61.292 | 55.000 | 17.16 | 10.08 | 0.00 | 4.26 |
4318 | 5266 | 1.148310 | AAAGTGGCGTCGACATTCAG | 58.852 | 50.000 | 17.16 | 0.00 | 0.00 | 3.02 |
4319 | 5267 | 2.442212 | TAAAGTGGCGTCGACATTCA | 57.558 | 45.000 | 17.16 | 7.35 | 0.00 | 2.57 |
4320 | 5268 | 2.284417 | GGATAAAGTGGCGTCGACATTC | 59.716 | 50.000 | 17.16 | 4.64 | 0.00 | 2.67 |
4321 | 5269 | 2.277084 | GGATAAAGTGGCGTCGACATT | 58.723 | 47.619 | 17.16 | 0.00 | 0.00 | 2.71 |
4322 | 5270 | 1.472728 | GGGATAAAGTGGCGTCGACAT | 60.473 | 52.381 | 17.16 | 0.00 | 0.00 | 3.06 |
4323 | 5271 | 0.108520 | GGGATAAAGTGGCGTCGACA | 60.109 | 55.000 | 17.16 | 0.00 | 0.00 | 4.35 |
4324 | 5272 | 0.108520 | TGGGATAAAGTGGCGTCGAC | 60.109 | 55.000 | 5.18 | 5.18 | 0.00 | 4.20 |
4325 | 5273 | 0.609151 | TTGGGATAAAGTGGCGTCGA | 59.391 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4326 | 5274 | 1.129811 | GTTTGGGATAAAGTGGCGTCG | 59.870 | 52.381 | 0.00 | 0.00 | 0.00 | 5.12 |
4327 | 5275 | 2.433436 | AGTTTGGGATAAAGTGGCGTC | 58.567 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
4328 | 5276 | 2.579410 | AGTTTGGGATAAAGTGGCGT | 57.421 | 45.000 | 0.00 | 0.00 | 0.00 | 5.68 |
4329 | 5277 | 3.869065 | TCTAGTTTGGGATAAAGTGGCG | 58.131 | 45.455 | 0.00 | 0.00 | 0.00 | 5.69 |
4330 | 5278 | 4.200092 | CCTCTAGTTTGGGATAAAGTGGC | 58.800 | 47.826 | 0.00 | 0.00 | 0.00 | 5.01 |
4331 | 5279 | 5.045869 | TCACCTCTAGTTTGGGATAAAGTGG | 60.046 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4332 | 5280 | 6.049955 | TCACCTCTAGTTTGGGATAAAGTG | 57.950 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
4333 | 5281 | 6.353082 | CCATCACCTCTAGTTTGGGATAAAGT | 60.353 | 42.308 | 0.00 | 0.00 | 0.00 | 2.66 |
4334 | 5282 | 6.058183 | CCATCACCTCTAGTTTGGGATAAAG | 58.942 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
4335 | 5283 | 5.104109 | CCCATCACCTCTAGTTTGGGATAAA | 60.104 | 44.000 | 0.00 | 0.00 | 46.23 | 1.40 |
4336 | 5284 | 4.412199 | CCCATCACCTCTAGTTTGGGATAA | 59.588 | 45.833 | 0.00 | 0.00 | 46.23 | 1.75 |
4337 | 5285 | 3.973973 | CCCATCACCTCTAGTTTGGGATA | 59.026 | 47.826 | 0.00 | 0.00 | 46.23 | 2.59 |
4338 | 5286 | 2.780010 | CCCATCACCTCTAGTTTGGGAT | 59.220 | 50.000 | 0.00 | 0.07 | 46.23 | 3.85 |
4339 | 5287 | 2.196595 | CCCATCACCTCTAGTTTGGGA | 58.803 | 52.381 | 0.00 | 0.00 | 46.23 | 4.37 |
4340 | 5288 | 1.212935 | CCCCATCACCTCTAGTTTGGG | 59.787 | 57.143 | 0.00 | 0.00 | 44.28 | 4.12 |
4341 | 5289 | 1.408822 | GCCCCATCACCTCTAGTTTGG | 60.409 | 57.143 | 0.00 | 0.00 | 0.00 | 3.28 |
4342 | 5290 | 1.408822 | GGCCCCATCACCTCTAGTTTG | 60.409 | 57.143 | 0.00 | 0.00 | 0.00 | 2.93 |
4343 | 5291 | 0.919710 | GGCCCCATCACCTCTAGTTT | 59.080 | 55.000 | 0.00 | 0.00 | 0.00 | 2.66 |
4344 | 5292 | 0.044855 | AGGCCCCATCACCTCTAGTT | 59.955 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4345 | 5293 | 0.692419 | CAGGCCCCATCACCTCTAGT | 60.692 | 60.000 | 0.00 | 0.00 | 32.56 | 2.57 |
4346 | 5294 | 1.414061 | CCAGGCCCCATCACCTCTAG | 61.414 | 65.000 | 0.00 | 0.00 | 32.56 | 2.43 |
4347 | 5295 | 1.384502 | CCAGGCCCCATCACCTCTA | 60.385 | 63.158 | 0.00 | 0.00 | 32.56 | 2.43 |
4348 | 5296 | 2.693864 | CCAGGCCCCATCACCTCT | 60.694 | 66.667 | 0.00 | 0.00 | 32.56 | 3.69 |
4349 | 5297 | 3.813724 | CCCAGGCCCCATCACCTC | 61.814 | 72.222 | 0.00 | 0.00 | 32.56 | 3.85 |
4362 | 5310 | 3.515286 | CTGAGCAATGCGGCCCAG | 61.515 | 66.667 | 0.00 | 2.76 | 0.00 | 4.45 |
4367 | 5315 | 2.825836 | GACCCCTGAGCAATGCGG | 60.826 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
4368 | 5316 | 2.110967 | CAGACCCCTGAGCAATGCG | 61.111 | 63.158 | 0.00 | 0.00 | 43.02 | 4.73 |
4369 | 5317 | 2.413142 | GCAGACCCCTGAGCAATGC | 61.413 | 63.158 | 0.00 | 0.00 | 43.02 | 3.56 |
4370 | 5318 | 1.751927 | GGCAGACCCCTGAGCAATG | 60.752 | 63.158 | 0.00 | 0.00 | 43.02 | 2.82 |
4371 | 5319 | 1.504275 | AAGGCAGACCCCTGAGCAAT | 61.504 | 55.000 | 0.00 | 0.00 | 43.02 | 3.56 |
4372 | 5320 | 2.156098 | AAGGCAGACCCCTGAGCAA | 61.156 | 57.895 | 0.00 | 0.00 | 43.02 | 3.91 |
4373 | 5321 | 2.530151 | AAGGCAGACCCCTGAGCA | 60.530 | 61.111 | 0.00 | 0.00 | 43.02 | 4.26 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.