Multiple sequence alignment - TraesCS5B01G478900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G478900 | chr5B | 100.000 | 2975 | 0 | 0 | 1 | 2975 | 650342676 | 650345650 | 0.000000e+00 | 5494.0 |
1 | TraesCS5B01G478900 | chr5B | 93.827 | 81 | 3 | 1 | 2622 | 2702 | 644352469 | 644352391 | 1.450000e-23 | 121.0 |
2 | TraesCS5B01G478900 | chr5B | 89.000 | 100 | 7 | 2 | 2626 | 2725 | 660271256 | 660271161 | 1.450000e-23 | 121.0 |
3 | TraesCS5B01G478900 | chr5B | 92.308 | 78 | 6 | 0 | 2623 | 2700 | 194191117 | 194191040 | 8.720000e-21 | 111.0 |
4 | TraesCS5B01G478900 | chr5A | 87.831 | 2646 | 168 | 80 | 77 | 2629 | 645130968 | 645133552 | 0.000000e+00 | 2961.0 |
5 | TraesCS5B01G478900 | chr5A | 90.041 | 241 | 12 | 6 | 2743 | 2975 | 645133674 | 645133910 | 4.820000e-78 | 302.0 |
6 | TraesCS5B01G478900 | chr5D | 90.264 | 1592 | 75 | 36 | 77 | 1637 | 517757443 | 517758985 | 0.000000e+00 | 2008.0 |
7 | TraesCS5B01G478900 | chr5D | 81.573 | 966 | 78 | 33 | 1681 | 2603 | 517758992 | 517759900 | 0.000000e+00 | 706.0 |
8 | TraesCS5B01G478900 | chr5D | 80.714 | 280 | 27 | 12 | 2704 | 2975 | 517759955 | 517760215 | 3.030000e-45 | 193.0 |
9 | TraesCS5B01G478900 | chr5D | 94.805 | 77 | 4 | 0 | 2626 | 2702 | 169535244 | 169535168 | 1.450000e-23 | 121.0 |
10 | TraesCS5B01G478900 | chr5D | 96.364 | 55 | 2 | 0 | 2549 | 2603 | 517759880 | 517759934 | 1.140000e-14 | 91.6 |
11 | TraesCS5B01G478900 | chr6B | 97.290 | 701 | 18 | 1 | 1903 | 2602 | 7599094 | 7598394 | 0.000000e+00 | 1188.0 |
12 | TraesCS5B01G478900 | chr6B | 91.986 | 287 | 9 | 7 | 2698 | 2975 | 7598381 | 7598100 | 1.000000e-104 | 390.0 |
13 | TraesCS5B01G478900 | chr2B | 97.500 | 80 | 2 | 0 | 2627 | 2706 | 782533479 | 782533400 | 1.440000e-28 | 137.0 |
14 | TraesCS5B01G478900 | chr2B | 94.937 | 79 | 3 | 1 | 2627 | 2705 | 772053322 | 772053245 | 4.030000e-24 | 122.0 |
15 | TraesCS5B01G478900 | chr2B | 90.698 | 86 | 6 | 2 | 2627 | 2711 | 772053248 | 772053332 | 2.420000e-21 | 113.0 |
16 | TraesCS5B01G478900 | chr4B | 96.104 | 77 | 1 | 1 | 2626 | 2702 | 668868292 | 668868218 | 1.120000e-24 | 124.0 |
17 | TraesCS5B01G478900 | chr4B | 91.765 | 85 | 2 | 3 | 2626 | 2705 | 477150329 | 477150245 | 2.420000e-21 | 113.0 |
18 | TraesCS5B01G478900 | chr4A | 82.883 | 111 | 7 | 4 | 2602 | 2702 | 607266485 | 607266593 | 4.080000e-14 | 89.8 |
19 | TraesCS5B01G478900 | chr7D | 82.857 | 105 | 10 | 6 | 2604 | 2704 | 40483651 | 40483551 | 1.470000e-13 | 87.9 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G478900 | chr5B | 650342676 | 650345650 | 2974 | False | 5494.00 | 5494 | 100.00000 | 1 | 2975 | 1 | chr5B.!!$F1 | 2974 |
1 | TraesCS5B01G478900 | chr5A | 645130968 | 645133910 | 2942 | False | 1631.50 | 2961 | 88.93600 | 77 | 2975 | 2 | chr5A.!!$F1 | 2898 |
2 | TraesCS5B01G478900 | chr5D | 517757443 | 517760215 | 2772 | False | 749.65 | 2008 | 87.22875 | 77 | 2975 | 4 | chr5D.!!$F1 | 2898 |
3 | TraesCS5B01G478900 | chr6B | 7598100 | 7599094 | 994 | True | 789.00 | 1188 | 94.63800 | 1903 | 2975 | 2 | chr6B.!!$R1 | 1072 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
38 | 39 | 0.178990 | AAACACCCTTCCACTGCCTC | 60.179 | 55.0 | 0.00 | 0.00 | 0.0 | 4.70 | F |
43 | 44 | 0.178992 | CCCTTCCACTGCCTCAACAA | 60.179 | 55.0 | 0.00 | 0.00 | 0.0 | 2.83 | F |
385 | 402 | 0.687098 | ATTTCCGGGCATGCATCCAA | 60.687 | 50.0 | 21.36 | 5.54 | 0.0 | 3.53 | F |
796 | 823 | 0.716666 | GCGGAAGAAGCTTCGAGTTC | 59.283 | 55.0 | 20.43 | 17.46 | 0.0 | 3.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1750 | 1798 | 0.966179 | AATTTCAAGCGAACACCCCC | 59.034 | 50.0 | 0.00 | 0.00 | 0.0 | 5.40 | R |
1800 | 1848 | 1.594331 | AAATAGATTTCGGCCGCTCC | 58.406 | 50.0 | 23.51 | 9.47 | 0.0 | 4.70 | R |
1801 | 1849 | 2.737252 | CCTAAATAGATTTCGGCCGCTC | 59.263 | 50.0 | 23.51 | 16.83 | 0.0 | 5.03 | R |
2684 | 2830 | 0.033796 | TGTACTCCCTCCGTTCCGAT | 60.034 | 55.0 | 0.00 | 0.00 | 0.0 | 4.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 7.470289 | GACATCATACTACAGATCCAAACAC | 57.530 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
25 | 26 | 6.349300 | ACATCATACTACAGATCCAAACACC | 58.651 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
26 | 27 | 5.353394 | TCATACTACAGATCCAAACACCC | 57.647 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
27 | 28 | 5.030147 | TCATACTACAGATCCAAACACCCT | 58.970 | 41.667 | 0.00 | 0.00 | 0.00 | 4.34 |
28 | 29 | 5.487488 | TCATACTACAGATCCAAACACCCTT | 59.513 | 40.000 | 0.00 | 0.00 | 0.00 | 3.95 |
29 | 30 | 4.287766 | ACTACAGATCCAAACACCCTTC | 57.712 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
30 | 31 | 2.586648 | ACAGATCCAAACACCCTTCC | 57.413 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
31 | 32 | 1.780309 | ACAGATCCAAACACCCTTCCA | 59.220 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
32 | 33 | 2.162681 | CAGATCCAAACACCCTTCCAC | 58.837 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
33 | 34 | 2.065799 | AGATCCAAACACCCTTCCACT | 58.934 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
34 | 35 | 2.162681 | GATCCAAACACCCTTCCACTG | 58.837 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
35 | 36 | 0.467290 | TCCAAACACCCTTCCACTGC | 60.467 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
36 | 37 | 1.463553 | CCAAACACCCTTCCACTGCC | 61.464 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
37 | 38 | 0.468029 | CAAACACCCTTCCACTGCCT | 60.468 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
38 | 39 | 0.178990 | AAACACCCTTCCACTGCCTC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
39 | 40 | 1.352622 | AACACCCTTCCACTGCCTCA | 61.353 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
40 | 41 | 1.352622 | ACACCCTTCCACTGCCTCAA | 61.353 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
41 | 42 | 0.890996 | CACCCTTCCACTGCCTCAAC | 60.891 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
42 | 43 | 1.352622 | ACCCTTCCACTGCCTCAACA | 61.353 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
43 | 44 | 0.178992 | CCCTTCCACTGCCTCAACAA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
44 | 45 | 1.548582 | CCCTTCCACTGCCTCAACAAT | 60.549 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
45 | 46 | 2.242043 | CCTTCCACTGCCTCAACAATT | 58.758 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
46 | 47 | 2.629617 | CCTTCCACTGCCTCAACAATTT | 59.370 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
47 | 48 | 3.826157 | CCTTCCACTGCCTCAACAATTTA | 59.174 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
48 | 49 | 4.463891 | CCTTCCACTGCCTCAACAATTTAT | 59.536 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
49 | 50 | 5.047092 | CCTTCCACTGCCTCAACAATTTATT | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
50 | 51 | 6.418057 | TTCCACTGCCTCAACAATTTATTT | 57.582 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
51 | 52 | 5.782047 | TCCACTGCCTCAACAATTTATTTG | 58.218 | 37.500 | 0.00 | 0.00 | 41.36 | 2.32 |
52 | 53 | 4.389687 | CCACTGCCTCAACAATTTATTTGC | 59.610 | 41.667 | 0.00 | 0.00 | 39.03 | 3.68 |
53 | 54 | 4.989797 | CACTGCCTCAACAATTTATTTGCA | 59.010 | 37.500 | 0.00 | 0.00 | 39.03 | 4.08 |
54 | 55 | 5.119588 | CACTGCCTCAACAATTTATTTGCAG | 59.880 | 40.000 | 0.00 | 0.00 | 46.70 | 4.41 |
55 | 56 | 5.212532 | TGCCTCAACAATTTATTTGCAGT | 57.787 | 34.783 | 0.00 | 0.00 | 39.03 | 4.40 |
56 | 57 | 5.229423 | TGCCTCAACAATTTATTTGCAGTC | 58.771 | 37.500 | 0.00 | 0.00 | 39.03 | 3.51 |
57 | 58 | 5.010922 | TGCCTCAACAATTTATTTGCAGTCT | 59.989 | 36.000 | 0.00 | 0.00 | 39.03 | 3.24 |
58 | 59 | 6.208402 | TGCCTCAACAATTTATTTGCAGTCTA | 59.792 | 34.615 | 0.00 | 0.00 | 39.03 | 2.59 |
59 | 60 | 6.528072 | GCCTCAACAATTTATTTGCAGTCTAC | 59.472 | 38.462 | 0.00 | 0.00 | 39.03 | 2.59 |
60 | 61 | 7.592938 | CCTCAACAATTTATTTGCAGTCTACA | 58.407 | 34.615 | 0.00 | 0.00 | 39.03 | 2.74 |
61 | 62 | 7.752239 | CCTCAACAATTTATTTGCAGTCTACAG | 59.248 | 37.037 | 0.00 | 0.00 | 39.03 | 2.74 |
62 | 63 | 8.165239 | TCAACAATTTATTTGCAGTCTACAGT | 57.835 | 30.769 | 0.00 | 0.00 | 39.03 | 3.55 |
63 | 64 | 8.289618 | TCAACAATTTATTTGCAGTCTACAGTC | 58.710 | 33.333 | 0.00 | 0.00 | 39.03 | 3.51 |
64 | 65 | 7.986085 | ACAATTTATTTGCAGTCTACAGTCT | 57.014 | 32.000 | 0.00 | 0.00 | 39.03 | 3.24 |
65 | 66 | 9.502091 | AACAATTTATTTGCAGTCTACAGTCTA | 57.498 | 29.630 | 0.00 | 0.00 | 39.03 | 2.59 |
66 | 67 | 8.936864 | ACAATTTATTTGCAGTCTACAGTCTAC | 58.063 | 33.333 | 0.00 | 0.00 | 39.03 | 2.59 |
67 | 68 | 8.935844 | CAATTTATTTGCAGTCTACAGTCTACA | 58.064 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
68 | 69 | 7.884816 | TTTATTTGCAGTCTACAGTCTACAC | 57.115 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
69 | 70 | 4.929819 | TTTGCAGTCTACAGTCTACACA | 57.070 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
70 | 71 | 4.505313 | TTGCAGTCTACAGTCTACACAG | 57.495 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
71 | 72 | 3.487372 | TGCAGTCTACAGTCTACACAGT | 58.513 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
72 | 73 | 3.253432 | TGCAGTCTACAGTCTACACAGTG | 59.747 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
73 | 74 | 3.827625 | CAGTCTACAGTCTACACAGTGC | 58.172 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
74 | 75 | 3.253432 | CAGTCTACAGTCTACACAGTGCA | 59.747 | 47.826 | 0.00 | 0.00 | 0.00 | 4.57 |
75 | 76 | 4.082517 | CAGTCTACAGTCTACACAGTGCAT | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 3.96 |
82 | 83 | 3.578716 | AGTCTACACAGTGCATAAGTGGT | 59.421 | 43.478 | 16.89 | 8.05 | 37.58 | 4.16 |
157 | 159 | 1.961793 | ACAGCGGAAGTAAAGTGCAA | 58.038 | 45.000 | 0.00 | 0.00 | 0.00 | 4.08 |
177 | 179 | 7.500559 | AGTGCAAGTCAAACTAGAAATTCTTCT | 59.499 | 33.333 | 0.00 | 0.00 | 44.37 | 2.85 |
183 | 189 | 9.579932 | AGTCAAACTAGAAATTCTTCTTTCCAT | 57.420 | 29.630 | 0.00 | 0.00 | 42.17 | 3.41 |
207 | 221 | 4.718961 | ACTTTGCACACCAACTAATCTCT | 58.281 | 39.130 | 0.00 | 0.00 | 31.97 | 3.10 |
209 | 223 | 3.334583 | TGCACACCAACTAATCTCTCC | 57.665 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
210 | 224 | 2.027192 | TGCACACCAACTAATCTCTCCC | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
211 | 225 | 2.027192 | GCACACCAACTAATCTCTCCCA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
212 | 226 | 3.866651 | CACACCAACTAATCTCTCCCAG | 58.133 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
213 | 227 | 3.515502 | CACACCAACTAATCTCTCCCAGA | 59.484 | 47.826 | 0.00 | 0.00 | 34.78 | 3.86 |
214 | 228 | 4.163078 | CACACCAACTAATCTCTCCCAGAT | 59.837 | 45.833 | 0.00 | 0.00 | 44.56 | 2.90 |
215 | 229 | 5.363868 | CACACCAACTAATCTCTCCCAGATA | 59.636 | 44.000 | 0.00 | 0.00 | 41.47 | 1.98 |
216 | 230 | 5.964477 | ACACCAACTAATCTCTCCCAGATAA | 59.036 | 40.000 | 0.00 | 0.00 | 41.47 | 1.75 |
247 | 261 | 9.806448 | TTAACAATATTACCCATGATATGCACT | 57.194 | 29.630 | 0.00 | 0.00 | 0.00 | 4.40 |
248 | 262 | 7.928307 | ACAATATTACCCATGATATGCACTC | 57.072 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
249 | 263 | 6.886459 | ACAATATTACCCATGATATGCACTCC | 59.114 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
300 | 314 | 6.363357 | CACACAAGGAAGCTAAATGTTTAAGC | 59.637 | 38.462 | 0.00 | 0.00 | 0.00 | 3.09 |
332 | 346 | 1.635487 | TCAGGGTTGCAGAATTAGCCT | 59.365 | 47.619 | 0.13 | 0.13 | 40.24 | 4.58 |
353 | 370 | 4.391216 | CCTCAGAAATAAGCATATCGGCAG | 59.609 | 45.833 | 0.00 | 0.00 | 35.83 | 4.85 |
368 | 385 | 3.864243 | TCGGCAGTTACGATAACCAATT | 58.136 | 40.909 | 0.00 | 0.00 | 35.12 | 2.32 |
369 | 386 | 4.255301 | TCGGCAGTTACGATAACCAATTT | 58.745 | 39.130 | 0.00 | 0.00 | 35.12 | 1.82 |
385 | 402 | 0.687098 | ATTTCCGGGCATGCATCCAA | 60.687 | 50.000 | 21.36 | 5.54 | 0.00 | 3.53 |
404 | 421 | 1.384989 | ATCCTCACCTGTACTCGCCG | 61.385 | 60.000 | 0.00 | 0.00 | 0.00 | 6.46 |
474 | 497 | 5.198274 | GCAGAAGCGATTAATTAAACGGAG | 58.802 | 41.667 | 23.76 | 7.05 | 32.98 | 4.63 |
488 | 512 | 1.948391 | ACGGAGCTAGGGTTTAAGGT | 58.052 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
489 | 513 | 2.263545 | ACGGAGCTAGGGTTTAAGGTT | 58.736 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
498 | 522 | 2.283316 | TTTAAGGTTGGGGCGGCC | 60.283 | 61.111 | 22.00 | 22.00 | 0.00 | 6.13 |
796 | 823 | 0.716666 | GCGGAAGAAGCTTCGAGTTC | 59.283 | 55.000 | 20.43 | 17.46 | 0.00 | 3.01 |
797 | 824 | 0.985549 | CGGAAGAAGCTTCGAGTTCG | 59.014 | 55.000 | 20.43 | 15.78 | 41.45 | 3.95 |
865 | 892 | 1.436195 | TATGCGCCAAGATTCGTGCC | 61.436 | 55.000 | 4.18 | 0.00 | 34.58 | 5.01 |
866 | 893 | 3.430862 | GCGCCAAGATTCGTGCCA | 61.431 | 61.111 | 0.00 | 0.00 | 0.00 | 4.92 |
867 | 894 | 2.787249 | CGCCAAGATTCGTGCCAG | 59.213 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
899 | 927 | 2.125229 | TCGAGAGTCGAGACCCCG | 60.125 | 66.667 | 0.00 | 2.01 | 44.82 | 5.73 |
935 | 963 | 3.716195 | CCGCCATGTGGGTCCAGA | 61.716 | 66.667 | 0.54 | 0.00 | 39.65 | 3.86 |
937 | 965 | 2.439156 | GCCATGTGGGTCCAGAGC | 60.439 | 66.667 | 0.54 | 0.00 | 39.65 | 4.09 |
1023 | 1058 | 2.123033 | GGAGGAGAGGAGGGAGGC | 60.123 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
1027 | 1062 | 2.371259 | GGAGAGGAGGGAGGCAACC | 61.371 | 68.421 | 0.00 | 0.00 | 37.17 | 3.77 |
1080 | 1115 | 2.824880 | CCCCCAACCACAGACCGAA | 61.825 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
1511 | 1552 | 1.811266 | CCAACGACGCCTGATCCTG | 60.811 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
1512 | 1553 | 2.125512 | AACGACGCCTGATCCTGC | 60.126 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
1520 | 1561 | 2.034879 | CCTGATCCTGCGCGTGTTT | 61.035 | 57.895 | 8.43 | 0.00 | 0.00 | 2.83 |
1521 | 1562 | 1.133253 | CTGATCCTGCGCGTGTTTG | 59.867 | 57.895 | 8.43 | 0.00 | 0.00 | 2.93 |
1525 | 1571 | 1.195900 | GATCCTGCGCGTGTTTGTTTA | 59.804 | 47.619 | 8.43 | 0.00 | 0.00 | 2.01 |
1546 | 1592 | 9.079833 | TGTTTATTTAGTTAGAAATCGTCGAGG | 57.920 | 33.333 | 0.00 | 0.00 | 31.51 | 4.63 |
1558 | 1604 | 1.000607 | TCGTCGAGGGAAACTGTTGAG | 60.001 | 52.381 | 5.12 | 0.00 | 0.00 | 3.02 |
1564 | 1610 | 1.978580 | AGGGAAACTGTTGAGTCGGAT | 59.021 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
1622 | 1668 | 2.088423 | TGTTTGCGGTGGTTCCATATC | 58.912 | 47.619 | 0.00 | 0.00 | 35.57 | 1.63 |
1643 | 1689 | 5.438761 | TCGATATGATGAACATGACTCGT | 57.561 | 39.130 | 0.00 | 0.00 | 39.77 | 4.18 |
1649 | 1695 | 5.784750 | TGATGAACATGACTCGTTGATTC | 57.215 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
1659 | 1705 | 5.045872 | TGACTCGTTGATTCATAGCATCTG | 58.954 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1676 | 1722 | 1.799258 | CTGCTTGGGTTGTCCTGTGC | 61.799 | 60.000 | 0.00 | 0.00 | 36.20 | 4.57 |
1678 | 1724 | 1.109323 | GCTTGGGTTGTCCTGTGCTT | 61.109 | 55.000 | 0.00 | 0.00 | 36.20 | 3.91 |
1750 | 1798 | 6.128309 | TGTGGATGTCAATGATCTGTTAAACG | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 3.60 |
1800 | 1848 | 6.126568 | TGTGCATGATTGTTCAGATACATG | 57.873 | 37.500 | 0.00 | 0.00 | 38.33 | 3.21 |
1801 | 1849 | 5.066764 | TGTGCATGATTGTTCAGATACATGG | 59.933 | 40.000 | 0.00 | 0.00 | 36.61 | 3.66 |
1805 | 1853 | 4.122046 | TGATTGTTCAGATACATGGAGCG | 58.878 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
1808 | 1856 | 0.106708 | TTCAGATACATGGAGCGGCC | 59.893 | 55.000 | 0.00 | 0.00 | 37.10 | 6.13 |
1810 | 1858 | 1.832608 | AGATACATGGAGCGGCCGA | 60.833 | 57.895 | 33.48 | 8.40 | 40.66 | 5.54 |
1819 | 1867 | 1.134220 | TGGAGCGGCCGAAATCTATTT | 60.134 | 47.619 | 33.48 | 0.92 | 40.66 | 1.40 |
1820 | 1868 | 2.103432 | TGGAGCGGCCGAAATCTATTTA | 59.897 | 45.455 | 33.48 | 6.14 | 40.66 | 1.40 |
1821 | 1869 | 2.737252 | GGAGCGGCCGAAATCTATTTAG | 59.263 | 50.000 | 33.48 | 0.00 | 0.00 | 1.85 |
1822 | 1870 | 2.737252 | GAGCGGCCGAAATCTATTTAGG | 59.263 | 50.000 | 33.48 | 9.49 | 42.97 | 2.69 |
1830 | 1878 | 6.645827 | GGCCGAAATCTATTTAGGTAGAGAAC | 59.354 | 42.308 | 13.82 | 0.00 | 42.35 | 3.01 |
1847 | 1895 | 5.819991 | AGAGAACCAAATGTGTGATATGGT | 58.180 | 37.500 | 0.00 | 0.00 | 45.97 | 3.55 |
1869 | 1928 | 5.064325 | GGTGAGGATTCGTGTACAAATTACC | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2005 | 2078 | 7.660112 | TGATTATTGCTTGTTTGAACATCTGT | 58.340 | 30.769 | 0.00 | 0.00 | 38.95 | 3.41 |
2151 | 2227 | 8.267894 | AGTACTCATGCTATGTGATTTTACCTT | 58.732 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
2178 | 2254 | 2.547913 | TTGCTAATGCTGATTGTGCG | 57.452 | 45.000 | 0.00 | 0.00 | 40.48 | 5.34 |
2358 | 2464 | 6.995511 | TTGGTAGCAAATTAGCGTATCTTT | 57.004 | 33.333 | 4.54 | 0.00 | 40.15 | 2.52 |
2362 | 2468 | 5.162000 | AGCAAATTAGCGTATCTTTCTGC | 57.838 | 39.130 | 0.00 | 0.00 | 40.15 | 4.26 |
2603 | 2749 | 2.237143 | TGTCTTCCATTGACCAGCTAGG | 59.763 | 50.000 | 0.00 | 0.00 | 45.67 | 3.02 |
2604 | 2750 | 1.210478 | TCTTCCATTGACCAGCTAGGC | 59.790 | 52.381 | 2.50 | 0.00 | 43.14 | 3.93 |
2605 | 2751 | 0.991146 | TTCCATTGACCAGCTAGGCA | 59.009 | 50.000 | 0.00 | 0.00 | 43.14 | 4.75 |
2606 | 2752 | 0.543277 | TCCATTGACCAGCTAGGCAG | 59.457 | 55.000 | 0.00 | 0.00 | 43.14 | 4.85 |
2626 | 2772 | 0.251354 | CTAGTGGTGTGATGCCAGCT | 59.749 | 55.000 | 0.00 | 0.00 | 36.57 | 4.24 |
2627 | 2773 | 1.482182 | CTAGTGGTGTGATGCCAGCTA | 59.518 | 52.381 | 0.00 | 0.00 | 36.57 | 3.32 |
2628 | 2774 | 0.036010 | AGTGGTGTGATGCCAGCTAC | 60.036 | 55.000 | 0.00 | 0.00 | 36.57 | 3.58 |
2629 | 2775 | 0.036010 | GTGGTGTGATGCCAGCTACT | 60.036 | 55.000 | 0.00 | 0.00 | 36.57 | 2.57 |
2630 | 2776 | 0.250234 | TGGTGTGATGCCAGCTACTC | 59.750 | 55.000 | 0.00 | 0.00 | 34.02 | 2.59 |
2631 | 2777 | 0.462759 | GGTGTGATGCCAGCTACTCC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2632 | 2778 | 0.462759 | GTGTGATGCCAGCTACTCCC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2633 | 2779 | 0.618680 | TGTGATGCCAGCTACTCCCT | 60.619 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2634 | 2780 | 0.105778 | GTGATGCCAGCTACTCCCTC | 59.894 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2635 | 2781 | 1.050988 | TGATGCCAGCTACTCCCTCC | 61.051 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2636 | 2782 | 2.093537 | GATGCCAGCTACTCCCTCCG | 62.094 | 65.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2637 | 2783 | 2.760385 | GCCAGCTACTCCCTCCGT | 60.760 | 66.667 | 0.00 | 0.00 | 0.00 | 4.69 |
2638 | 2784 | 2.359967 | GCCAGCTACTCCCTCCGTT | 61.360 | 63.158 | 0.00 | 0.00 | 0.00 | 4.44 |
2639 | 2785 | 1.817209 | CCAGCTACTCCCTCCGTTC | 59.183 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
2640 | 2786 | 1.677637 | CCAGCTACTCCCTCCGTTCC | 61.678 | 65.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2641 | 2787 | 1.753463 | AGCTACTCCCTCCGTTCCG | 60.753 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
2642 | 2788 | 1.751927 | GCTACTCCCTCCGTTCCGA | 60.752 | 63.158 | 0.00 | 0.00 | 0.00 | 4.55 |
2643 | 2789 | 1.108132 | GCTACTCCCTCCGTTCCGAT | 61.108 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2644 | 2790 | 1.400737 | CTACTCCCTCCGTTCCGATT | 58.599 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2645 | 2791 | 1.755380 | CTACTCCCTCCGTTCCGATTT | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
2646 | 2792 | 1.856629 | ACTCCCTCCGTTCCGATTTA | 58.143 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2647 | 2793 | 1.479730 | ACTCCCTCCGTTCCGATTTAC | 59.520 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
2648 | 2794 | 1.755380 | CTCCCTCCGTTCCGATTTACT | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
2649 | 2795 | 1.753073 | TCCCTCCGTTCCGATTTACTC | 59.247 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
2651 | 2797 | 1.133790 | CCTCCGTTCCGATTTACTCGT | 59.866 | 52.381 | 0.00 | 0.00 | 46.18 | 4.18 |
2652 | 2798 | 2.448219 | CTCCGTTCCGATTTACTCGTC | 58.552 | 52.381 | 0.00 | 0.00 | 46.18 | 4.20 |
2653 | 2799 | 1.186030 | CCGTTCCGATTTACTCGTCG | 58.814 | 55.000 | 0.00 | 0.00 | 46.18 | 5.12 |
2654 | 2800 | 1.466360 | CCGTTCCGATTTACTCGTCGT | 60.466 | 52.381 | 0.00 | 0.00 | 46.18 | 4.34 |
2655 | 2801 | 1.576246 | CGTTCCGATTTACTCGTCGTG | 59.424 | 52.381 | 0.00 | 0.00 | 46.18 | 4.35 |
2656 | 2802 | 1.916000 | GTTCCGATTTACTCGTCGTGG | 59.084 | 52.381 | 0.00 | 0.00 | 46.18 | 4.94 |
2657 | 2803 | 0.452987 | TCCGATTTACTCGTCGTGGG | 59.547 | 55.000 | 0.00 | 0.00 | 46.18 | 4.61 |
2658 | 2804 | 0.452987 | CCGATTTACTCGTCGTGGGA | 59.547 | 55.000 | 0.00 | 0.00 | 46.18 | 4.37 |
2659 | 2805 | 1.066605 | CCGATTTACTCGTCGTGGGAT | 59.933 | 52.381 | 0.00 | 0.00 | 46.18 | 3.85 |
2660 | 2806 | 2.480759 | CCGATTTACTCGTCGTGGGATT | 60.481 | 50.000 | 0.00 | 0.00 | 46.18 | 3.01 |
2661 | 2807 | 3.184541 | CGATTTACTCGTCGTGGGATTT | 58.815 | 45.455 | 0.00 | 0.00 | 42.56 | 2.17 |
2662 | 2808 | 3.000078 | CGATTTACTCGTCGTGGGATTTG | 60.000 | 47.826 | 0.00 | 0.00 | 42.56 | 2.32 |
2663 | 2809 | 3.663995 | TTTACTCGTCGTGGGATTTGA | 57.336 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
2664 | 2810 | 3.663995 | TTACTCGTCGTGGGATTTGAA | 57.336 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
2665 | 2811 | 1.792006 | ACTCGTCGTGGGATTTGAAC | 58.208 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2666 | 2812 | 1.343465 | ACTCGTCGTGGGATTTGAACT | 59.657 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
2667 | 2813 | 2.559668 | ACTCGTCGTGGGATTTGAACTA | 59.440 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
2668 | 2814 | 3.006110 | ACTCGTCGTGGGATTTGAACTAA | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2669 | 2815 | 3.991773 | CTCGTCGTGGGATTTGAACTAAA | 59.008 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
2670 | 2816 | 4.378774 | TCGTCGTGGGATTTGAACTAAAA | 58.621 | 39.130 | 0.00 | 0.00 | 0.00 | 1.52 |
2671 | 2817 | 4.211794 | TCGTCGTGGGATTTGAACTAAAAC | 59.788 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
2672 | 2818 | 4.612033 | CGTCGTGGGATTTGAACTAAAACC | 60.612 | 45.833 | 0.00 | 0.00 | 39.71 | 3.27 |
2673 | 2819 | 4.276431 | GTCGTGGGATTTGAACTAAAACCA | 59.724 | 41.667 | 0.00 | 0.00 | 41.59 | 3.67 |
2674 | 2820 | 5.048294 | GTCGTGGGATTTGAACTAAAACCAT | 60.048 | 40.000 | 0.00 | 0.00 | 41.59 | 3.55 |
2675 | 2821 | 5.048364 | TCGTGGGATTTGAACTAAAACCATG | 60.048 | 40.000 | 0.00 | 0.00 | 41.59 | 3.66 |
2676 | 2822 | 5.048364 | CGTGGGATTTGAACTAAAACCATGA | 60.048 | 40.000 | 0.00 | 0.00 | 42.74 | 3.07 |
2677 | 2823 | 6.156519 | GTGGGATTTGAACTAAAACCATGAC | 58.843 | 40.000 | 0.00 | 0.00 | 41.59 | 3.06 |
2678 | 2824 | 5.048364 | TGGGATTTGAACTAAAACCATGACG | 60.048 | 40.000 | 0.00 | 0.00 | 41.59 | 4.35 |
2679 | 2825 | 5.182380 | GGGATTTGAACTAAAACCATGACGA | 59.818 | 40.000 | 0.00 | 0.00 | 41.59 | 4.20 |
2680 | 2826 | 6.314784 | GGATTTGAACTAAAACCATGACGAG | 58.685 | 40.000 | 0.00 | 0.00 | 40.06 | 4.18 |
2681 | 2827 | 6.072673 | GGATTTGAACTAAAACCATGACGAGT | 60.073 | 38.462 | 0.00 | 0.00 | 40.06 | 4.18 |
2682 | 2828 | 7.118680 | GGATTTGAACTAAAACCATGACGAGTA | 59.881 | 37.037 | 0.00 | 0.00 | 40.06 | 2.59 |
2683 | 2829 | 7.789273 | TTTGAACTAAAACCATGACGAGTAA | 57.211 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2684 | 2830 | 7.789273 | TTGAACTAAAACCATGACGAGTAAA | 57.211 | 32.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2685 | 2831 | 7.972832 | TGAACTAAAACCATGACGAGTAAAT | 57.027 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2686 | 2832 | 8.025243 | TGAACTAAAACCATGACGAGTAAATC | 57.975 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
2772 | 3002 | 6.002082 | GGGAAACTGTACTGTCTATTTGGTT | 58.998 | 40.000 | 5.81 | 0.00 | 0.00 | 3.67 |
2801 | 3031 | 3.985127 | AGAGGCATGATTCCCAATTTGA | 58.015 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2867 | 3097 | 4.900635 | AAATATAGCTTGTTTGCCTCGG | 57.099 | 40.909 | 0.00 | 0.00 | 0.00 | 4.63 |
2880 | 3111 | 1.631388 | TGCCTCGGAAAATCACCCTTA | 59.369 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
2912 | 3151 | 0.107945 | GTTTGTTTGCACCAAGGCCA | 60.108 | 50.000 | 5.01 | 0.00 | 0.00 | 5.36 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 6.480320 | GGTGTTTGGATCTGTAGTATGATGTC | 59.520 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
1 | 2 | 6.349300 | GGTGTTTGGATCTGTAGTATGATGT | 58.651 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2 | 3 | 5.760253 | GGGTGTTTGGATCTGTAGTATGATG | 59.240 | 44.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3 | 4 | 5.667626 | AGGGTGTTTGGATCTGTAGTATGAT | 59.332 | 40.000 | 0.00 | 0.00 | 0.00 | 2.45 |
4 | 5 | 5.030147 | AGGGTGTTTGGATCTGTAGTATGA | 58.970 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
5 | 6 | 5.359194 | AGGGTGTTTGGATCTGTAGTATG | 57.641 | 43.478 | 0.00 | 0.00 | 0.00 | 2.39 |
6 | 7 | 5.104485 | GGAAGGGTGTTTGGATCTGTAGTAT | 60.104 | 44.000 | 0.00 | 0.00 | 0.00 | 2.12 |
7 | 8 | 4.224370 | GGAAGGGTGTTTGGATCTGTAGTA | 59.776 | 45.833 | 0.00 | 0.00 | 0.00 | 1.82 |
8 | 9 | 3.009143 | GGAAGGGTGTTTGGATCTGTAGT | 59.991 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
9 | 10 | 3.009033 | TGGAAGGGTGTTTGGATCTGTAG | 59.991 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
10 | 11 | 2.983192 | TGGAAGGGTGTTTGGATCTGTA | 59.017 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
11 | 12 | 1.780309 | TGGAAGGGTGTTTGGATCTGT | 59.220 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
12 | 13 | 2.162681 | GTGGAAGGGTGTTTGGATCTG | 58.837 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
13 | 14 | 2.065799 | AGTGGAAGGGTGTTTGGATCT | 58.934 | 47.619 | 0.00 | 0.00 | 0.00 | 2.75 |
14 | 15 | 2.162681 | CAGTGGAAGGGTGTTTGGATC | 58.837 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
15 | 16 | 1.823250 | GCAGTGGAAGGGTGTTTGGAT | 60.823 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
16 | 17 | 0.467290 | GCAGTGGAAGGGTGTTTGGA | 60.467 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
17 | 18 | 1.463553 | GGCAGTGGAAGGGTGTTTGG | 61.464 | 60.000 | 0.00 | 0.00 | 0.00 | 3.28 |
18 | 19 | 0.468029 | AGGCAGTGGAAGGGTGTTTG | 60.468 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
19 | 20 | 0.178990 | GAGGCAGTGGAAGGGTGTTT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
20 | 21 | 1.352622 | TGAGGCAGTGGAAGGGTGTT | 61.353 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
21 | 22 | 1.352622 | TTGAGGCAGTGGAAGGGTGT | 61.353 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
22 | 23 | 0.890996 | GTTGAGGCAGTGGAAGGGTG | 60.891 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
23 | 24 | 1.352622 | TGTTGAGGCAGTGGAAGGGT | 61.353 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
24 | 25 | 0.178992 | TTGTTGAGGCAGTGGAAGGG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
25 | 26 | 1.915141 | ATTGTTGAGGCAGTGGAAGG | 58.085 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
26 | 27 | 5.649782 | ATAAATTGTTGAGGCAGTGGAAG | 57.350 | 39.130 | 0.00 | 0.00 | 0.00 | 3.46 |
27 | 28 | 6.222389 | CAAATAAATTGTTGAGGCAGTGGAA | 58.778 | 36.000 | 0.00 | 0.00 | 34.16 | 3.53 |
28 | 29 | 5.782047 | CAAATAAATTGTTGAGGCAGTGGA | 58.218 | 37.500 | 0.00 | 0.00 | 34.16 | 4.02 |
29 | 30 | 4.389687 | GCAAATAAATTGTTGAGGCAGTGG | 59.610 | 41.667 | 0.00 | 0.00 | 41.32 | 4.00 |
30 | 31 | 4.989797 | TGCAAATAAATTGTTGAGGCAGTG | 59.010 | 37.500 | 0.00 | 0.00 | 41.32 | 3.66 |
31 | 32 | 5.212532 | TGCAAATAAATTGTTGAGGCAGT | 57.787 | 34.783 | 0.00 | 0.00 | 41.32 | 4.40 |
32 | 33 | 5.773239 | CTGCAAATAAATTGTTGAGGCAG | 57.227 | 39.130 | 8.65 | 8.65 | 41.32 | 4.85 |
33 | 34 | 5.010922 | AGACTGCAAATAAATTGTTGAGGCA | 59.989 | 36.000 | 0.00 | 0.00 | 41.32 | 4.75 |
34 | 35 | 5.473039 | AGACTGCAAATAAATTGTTGAGGC | 58.527 | 37.500 | 0.00 | 0.00 | 41.32 | 4.70 |
35 | 36 | 7.592938 | TGTAGACTGCAAATAAATTGTTGAGG | 58.407 | 34.615 | 0.00 | 0.00 | 41.32 | 3.86 |
36 | 37 | 8.292448 | ACTGTAGACTGCAAATAAATTGTTGAG | 58.708 | 33.333 | 0.00 | 0.00 | 41.32 | 3.02 |
37 | 38 | 8.165239 | ACTGTAGACTGCAAATAAATTGTTGA | 57.835 | 30.769 | 0.00 | 0.00 | 41.32 | 3.18 |
38 | 39 | 8.292448 | AGACTGTAGACTGCAAATAAATTGTTG | 58.708 | 33.333 | 0.00 | 0.00 | 41.32 | 3.33 |
39 | 40 | 8.396272 | AGACTGTAGACTGCAAATAAATTGTT | 57.604 | 30.769 | 0.00 | 0.00 | 41.32 | 2.83 |
40 | 41 | 7.986085 | AGACTGTAGACTGCAAATAAATTGT | 57.014 | 32.000 | 0.00 | 0.00 | 41.32 | 2.71 |
41 | 42 | 8.935844 | TGTAGACTGTAGACTGCAAATAAATTG | 58.064 | 33.333 | 0.00 | 0.00 | 42.21 | 2.32 |
42 | 43 | 8.936864 | GTGTAGACTGTAGACTGCAAATAAATT | 58.063 | 33.333 | 4.12 | 0.00 | 34.93 | 1.82 |
43 | 44 | 8.094548 | TGTGTAGACTGTAGACTGCAAATAAAT | 58.905 | 33.333 | 4.12 | 0.00 | 34.93 | 1.40 |
44 | 45 | 7.438564 | TGTGTAGACTGTAGACTGCAAATAAA | 58.561 | 34.615 | 4.12 | 0.00 | 34.93 | 1.40 |
45 | 46 | 6.988522 | TGTGTAGACTGTAGACTGCAAATAA | 58.011 | 36.000 | 4.12 | 0.00 | 34.93 | 1.40 |
46 | 47 | 6.208797 | ACTGTGTAGACTGTAGACTGCAAATA | 59.791 | 38.462 | 0.37 | 0.00 | 34.93 | 1.40 |
47 | 48 | 5.011125 | ACTGTGTAGACTGTAGACTGCAAAT | 59.989 | 40.000 | 0.37 | 0.00 | 34.93 | 2.32 |
48 | 49 | 4.341235 | ACTGTGTAGACTGTAGACTGCAAA | 59.659 | 41.667 | 0.37 | 0.00 | 34.93 | 3.68 |
49 | 50 | 3.889538 | ACTGTGTAGACTGTAGACTGCAA | 59.110 | 43.478 | 0.37 | 0.00 | 34.93 | 4.08 |
50 | 51 | 3.253432 | CACTGTGTAGACTGTAGACTGCA | 59.747 | 47.826 | 2.14 | 0.00 | 33.27 | 4.41 |
51 | 52 | 3.827625 | CACTGTGTAGACTGTAGACTGC | 58.172 | 50.000 | 2.14 | 0.00 | 33.27 | 4.40 |
52 | 53 | 3.253432 | TGCACTGTGTAGACTGTAGACTG | 59.747 | 47.826 | 9.86 | 0.00 | 33.27 | 3.51 |
53 | 54 | 3.487372 | TGCACTGTGTAGACTGTAGACT | 58.513 | 45.455 | 9.86 | 0.00 | 33.27 | 3.24 |
54 | 55 | 3.917329 | TGCACTGTGTAGACTGTAGAC | 57.083 | 47.619 | 9.86 | 0.00 | 33.27 | 2.59 |
55 | 56 | 5.710567 | ACTTATGCACTGTGTAGACTGTAGA | 59.289 | 40.000 | 9.86 | 0.00 | 33.27 | 2.59 |
56 | 57 | 5.802451 | CACTTATGCACTGTGTAGACTGTAG | 59.198 | 44.000 | 9.86 | 0.00 | 33.27 | 2.74 |
57 | 58 | 5.336451 | CCACTTATGCACTGTGTAGACTGTA | 60.336 | 44.000 | 9.86 | 0.00 | 33.27 | 2.74 |
58 | 59 | 4.560128 | CACTTATGCACTGTGTAGACTGT | 58.440 | 43.478 | 9.86 | 0.00 | 34.78 | 3.55 |
59 | 60 | 3.928992 | CCACTTATGCACTGTGTAGACTG | 59.071 | 47.826 | 9.86 | 0.66 | 0.00 | 3.51 |
60 | 61 | 3.578716 | ACCACTTATGCACTGTGTAGACT | 59.421 | 43.478 | 9.86 | 0.00 | 0.00 | 3.24 |
61 | 62 | 3.926616 | ACCACTTATGCACTGTGTAGAC | 58.073 | 45.455 | 9.86 | 0.00 | 0.00 | 2.59 |
62 | 63 | 5.731957 | TTACCACTTATGCACTGTGTAGA | 57.268 | 39.130 | 9.86 | 0.00 | 0.00 | 2.59 |
63 | 64 | 5.220662 | GCATTACCACTTATGCACTGTGTAG | 60.221 | 44.000 | 9.86 | 5.00 | 44.99 | 2.74 |
64 | 65 | 4.634004 | GCATTACCACTTATGCACTGTGTA | 59.366 | 41.667 | 9.86 | 5.19 | 44.99 | 2.90 |
65 | 66 | 3.440173 | GCATTACCACTTATGCACTGTGT | 59.560 | 43.478 | 9.86 | 0.00 | 44.99 | 3.72 |
66 | 67 | 4.019919 | GCATTACCACTTATGCACTGTG | 57.980 | 45.455 | 2.76 | 2.76 | 44.99 | 3.66 |
72 | 73 | 4.399303 | ACTTTGGAGCATTACCACTTATGC | 59.601 | 41.667 | 0.00 | 0.00 | 45.77 | 3.14 |
73 | 74 | 5.415701 | ACACTTTGGAGCATTACCACTTATG | 59.584 | 40.000 | 0.00 | 0.00 | 37.13 | 1.90 |
74 | 75 | 5.570320 | ACACTTTGGAGCATTACCACTTAT | 58.430 | 37.500 | 0.00 | 0.00 | 37.13 | 1.73 |
75 | 76 | 4.980573 | ACACTTTGGAGCATTACCACTTA | 58.019 | 39.130 | 0.00 | 0.00 | 37.13 | 2.24 |
82 | 83 | 3.976169 | GTGCAAACACTTTGGAGCATTA | 58.024 | 40.909 | 0.00 | 0.00 | 41.75 | 1.90 |
157 | 159 | 8.980481 | TGGAAAGAAGAATTTCTAGTTTGACT | 57.020 | 30.769 | 0.00 | 0.00 | 42.80 | 3.41 |
177 | 179 | 2.382882 | TGGTGTGCAAAGTCATGGAAA | 58.617 | 42.857 | 0.00 | 0.00 | 0.00 | 3.13 |
183 | 189 | 4.460263 | AGATTAGTTGGTGTGCAAAGTCA | 58.540 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
228 | 242 | 6.959954 | AGTAGGAGTGCATATCATGGGTAATA | 59.040 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
229 | 243 | 5.787494 | AGTAGGAGTGCATATCATGGGTAAT | 59.213 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
243 | 257 | 3.320673 | AGCTTGTGTTAGTAGGAGTGC | 57.679 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
244 | 258 | 5.348997 | GCTTAAGCTTGTGTTAGTAGGAGTG | 59.651 | 44.000 | 20.38 | 0.00 | 38.21 | 3.51 |
245 | 259 | 5.011738 | TGCTTAAGCTTGTGTTAGTAGGAGT | 59.988 | 40.000 | 26.90 | 0.00 | 42.66 | 3.85 |
246 | 260 | 5.479306 | TGCTTAAGCTTGTGTTAGTAGGAG | 58.521 | 41.667 | 26.90 | 0.00 | 42.66 | 3.69 |
247 | 261 | 5.477607 | TGCTTAAGCTTGTGTTAGTAGGA | 57.522 | 39.130 | 26.90 | 0.00 | 42.66 | 2.94 |
248 | 262 | 5.468746 | TGTTGCTTAAGCTTGTGTTAGTAGG | 59.531 | 40.000 | 26.90 | 0.00 | 42.66 | 3.18 |
249 | 263 | 6.202954 | AGTGTTGCTTAAGCTTGTGTTAGTAG | 59.797 | 38.462 | 26.90 | 0.00 | 42.66 | 2.57 |
300 | 314 | 1.818674 | CAACCCTGAATTCCTTTCCCG | 59.181 | 52.381 | 2.27 | 0.00 | 33.04 | 5.14 |
332 | 346 | 4.960938 | ACTGCCGATATGCTTATTTCTGA | 58.039 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
353 | 370 | 3.242837 | GCCCGGAAATTGGTTATCGTAAC | 60.243 | 47.826 | 0.73 | 0.88 | 0.00 | 2.50 |
368 | 385 | 1.076118 | ATTGGATGCATGCCCGGAA | 60.076 | 52.632 | 16.68 | 3.37 | 0.00 | 4.30 |
369 | 386 | 1.529010 | GATTGGATGCATGCCCGGA | 60.529 | 57.895 | 16.68 | 3.38 | 0.00 | 5.14 |
385 | 402 | 1.384989 | CGGCGAGTACAGGTGAGGAT | 61.385 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
474 | 497 | 1.958549 | GCCCCAACCTTAAACCCTAGC | 60.959 | 57.143 | 0.00 | 0.00 | 0.00 | 3.42 |
498 | 522 | 0.460284 | CAGGTAGTAACTGCGCCCTG | 60.460 | 60.000 | 4.18 | 7.90 | 34.10 | 4.45 |
508 | 532 | 2.163010 | CGCCGAGAACTTCAGGTAGTAA | 59.837 | 50.000 | 5.53 | 0.00 | 0.00 | 2.24 |
509 | 533 | 1.741706 | CGCCGAGAACTTCAGGTAGTA | 59.258 | 52.381 | 5.53 | 0.00 | 0.00 | 1.82 |
510 | 534 | 0.526662 | CGCCGAGAACTTCAGGTAGT | 59.473 | 55.000 | 5.53 | 0.00 | 0.00 | 2.73 |
721 | 745 | 4.493747 | GCTTCCGCGAGCGTACCT | 62.494 | 66.667 | 8.23 | 0.00 | 37.81 | 3.08 |
727 | 751 | 3.191539 | CCAGAAGCTTCCGCGAGC | 61.192 | 66.667 | 22.81 | 10.26 | 42.32 | 5.03 |
728 | 752 | 1.079819 | TTCCAGAAGCTTCCGCGAG | 60.080 | 57.895 | 22.81 | 7.55 | 42.32 | 5.03 |
729 | 753 | 1.079819 | CTTCCAGAAGCTTCCGCGA | 60.080 | 57.895 | 22.81 | 12.61 | 42.32 | 5.87 |
773 | 800 | 2.391389 | CGAAGCTTCTTCCGCACCC | 61.391 | 63.158 | 23.50 | 0.00 | 0.00 | 4.61 |
774 | 801 | 1.355066 | CTCGAAGCTTCTTCCGCACC | 61.355 | 60.000 | 23.50 | 0.00 | 0.00 | 5.01 |
776 | 803 | 0.033504 | AACTCGAAGCTTCTTCCGCA | 59.966 | 50.000 | 23.50 | 1.93 | 0.00 | 5.69 |
865 | 892 | 1.535896 | TCGAACGTTCAGGACTCTCTG | 59.464 | 52.381 | 26.71 | 7.53 | 36.17 | 3.35 |
866 | 893 | 1.807742 | CTCGAACGTTCAGGACTCTCT | 59.192 | 52.381 | 26.71 | 0.00 | 0.00 | 3.10 |
867 | 894 | 1.805345 | TCTCGAACGTTCAGGACTCTC | 59.195 | 52.381 | 26.71 | 0.00 | 0.00 | 3.20 |
893 | 920 | 4.593864 | GATCTCAGCCGCGGGGTC | 62.594 | 72.222 | 29.38 | 12.31 | 34.97 | 4.46 |
996 | 1024 | 3.436761 | CCTCCTCTCCTCCTTATTACGGT | 60.437 | 52.174 | 0.00 | 0.00 | 0.00 | 4.83 |
1023 | 1058 | 1.555967 | AATCGATTTGGGGGTGGTTG | 58.444 | 50.000 | 4.39 | 0.00 | 0.00 | 3.77 |
1072 | 1107 | 2.423577 | CTAGGGTTTGGTTTCGGTCTG | 58.576 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
1073 | 1108 | 1.350019 | CCTAGGGTTTGGTTTCGGTCT | 59.650 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
1078 | 1113 | 1.592400 | GCCGCCTAGGGTTTGGTTTC | 61.592 | 60.000 | 11.72 | 0.00 | 41.48 | 2.78 |
1080 | 1115 | 2.035155 | GCCGCCTAGGGTTTGGTT | 59.965 | 61.111 | 11.72 | 0.00 | 41.48 | 3.67 |
1511 | 1552 | 6.072733 | TCTAACTAAATAAACAAACACGCGC | 58.927 | 36.000 | 5.73 | 0.00 | 0.00 | 6.86 |
1512 | 1553 | 8.478527 | TTTCTAACTAAATAAACAAACACGCG | 57.521 | 30.769 | 3.53 | 3.53 | 0.00 | 6.01 |
1520 | 1561 | 9.079833 | CCTCGACGATTTCTAACTAAATAAACA | 57.920 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1521 | 1562 | 8.538039 | CCCTCGACGATTTCTAACTAAATAAAC | 58.462 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
1525 | 1571 | 6.461110 | TCCCTCGACGATTTCTAACTAAAT | 57.539 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
1546 | 1592 | 3.797256 | CGATATCCGACTCAACAGTTTCC | 59.203 | 47.826 | 0.00 | 0.00 | 41.76 | 3.13 |
1558 | 1604 | 3.757493 | AGATTACAGGACCGATATCCGAC | 59.243 | 47.826 | 0.00 | 0.00 | 44.22 | 4.79 |
1564 | 1610 | 3.296854 | AGCACAGATTACAGGACCGATA | 58.703 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
1622 | 1668 | 5.687285 | TCAACGAGTCATGTTCATCATATCG | 59.313 | 40.000 | 0.00 | 0.00 | 39.65 | 2.92 |
1649 | 1695 | 6.980716 | AGGACAACCCAAGCAGATGCTATG | 62.981 | 50.000 | 7.93 | 8.55 | 43.71 | 2.23 |
1659 | 1705 | 1.109323 | AAGCACAGGACAACCCAAGC | 61.109 | 55.000 | 0.00 | 0.00 | 37.41 | 4.01 |
1719 | 1765 | 5.529800 | CAGATCATTGACATCCACAGCATAA | 59.470 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1750 | 1798 | 0.966179 | AATTTCAAGCGAACACCCCC | 59.034 | 50.000 | 0.00 | 0.00 | 0.00 | 5.40 |
1800 | 1848 | 1.594331 | AAATAGATTTCGGCCGCTCC | 58.406 | 50.000 | 23.51 | 9.47 | 0.00 | 4.70 |
1801 | 1849 | 2.737252 | CCTAAATAGATTTCGGCCGCTC | 59.263 | 50.000 | 23.51 | 16.83 | 0.00 | 5.03 |
1805 | 1853 | 6.342338 | TCTCTACCTAAATAGATTTCGGCC | 57.658 | 41.667 | 5.66 | 0.00 | 36.41 | 6.13 |
1822 | 1870 | 6.823689 | ACCATATCACACATTTGGTTCTCTAC | 59.176 | 38.462 | 0.00 | 0.00 | 37.40 | 2.59 |
1830 | 1878 | 4.525996 | TCCTCACCATATCACACATTTGG | 58.474 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
1836 | 1884 | 3.804325 | CACGAATCCTCACCATATCACAC | 59.196 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
1845 | 1893 | 5.064325 | GGTAATTTGTACACGAATCCTCACC | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1847 | 1895 | 5.795972 | TGGTAATTTGTACACGAATCCTCA | 58.204 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
1869 | 1928 | 4.553330 | ACACCCACCTAAATCAGTACTG | 57.447 | 45.455 | 17.17 | 17.17 | 0.00 | 2.74 |
2151 | 2227 | 6.812656 | CACAATCAGCATTAGCAAACCATAAA | 59.187 | 34.615 | 0.00 | 0.00 | 45.49 | 1.40 |
2195 | 2271 | 7.916914 | ACCCATGAAAACACTAATACTACAC | 57.083 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2362 | 2468 | 7.304735 | TGCACATAGCTGTTACAAATTTACAG | 58.695 | 34.615 | 13.12 | 13.12 | 45.94 | 2.74 |
2603 | 2749 | 1.372087 | GGCATCACACCACTAGCTGC | 61.372 | 60.000 | 0.00 | 0.00 | 0.00 | 5.25 |
2604 | 2750 | 0.036105 | TGGCATCACACCACTAGCTG | 60.036 | 55.000 | 0.00 | 0.00 | 30.29 | 4.24 |
2605 | 2751 | 0.251354 | CTGGCATCACACCACTAGCT | 59.749 | 55.000 | 0.00 | 0.00 | 32.49 | 3.32 |
2606 | 2752 | 1.372087 | GCTGGCATCACACCACTAGC | 61.372 | 60.000 | 0.00 | 0.00 | 32.49 | 3.42 |
2607 | 2753 | 0.251354 | AGCTGGCATCACACCACTAG | 59.749 | 55.000 | 0.00 | 0.00 | 32.49 | 2.57 |
2608 | 2754 | 1.207089 | GTAGCTGGCATCACACCACTA | 59.793 | 52.381 | 0.00 | 0.00 | 32.49 | 2.74 |
2609 | 2755 | 0.036010 | GTAGCTGGCATCACACCACT | 60.036 | 55.000 | 0.00 | 0.00 | 32.49 | 4.00 |
2610 | 2756 | 0.036010 | AGTAGCTGGCATCACACCAC | 60.036 | 55.000 | 0.00 | 0.00 | 32.49 | 4.16 |
2641 | 2787 | 4.178540 | TCAAATCCCACGACGAGTAAATC | 58.821 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
2642 | 2788 | 4.196626 | TCAAATCCCACGACGAGTAAAT | 57.803 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
2643 | 2789 | 3.663995 | TCAAATCCCACGACGAGTAAA | 57.336 | 42.857 | 0.00 | 0.00 | 0.00 | 2.01 |
2644 | 2790 | 3.006110 | AGTTCAAATCCCACGACGAGTAA | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2645 | 2791 | 2.559668 | AGTTCAAATCCCACGACGAGTA | 59.440 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
2646 | 2792 | 1.343465 | AGTTCAAATCCCACGACGAGT | 59.657 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
2647 | 2793 | 2.080286 | AGTTCAAATCCCACGACGAG | 57.920 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2648 | 2794 | 3.663995 | TTAGTTCAAATCCCACGACGA | 57.336 | 42.857 | 0.00 | 0.00 | 0.00 | 4.20 |
2649 | 2795 | 4.460505 | GTTTTAGTTCAAATCCCACGACG | 58.539 | 43.478 | 0.00 | 0.00 | 0.00 | 5.12 |
2650 | 2796 | 4.276431 | TGGTTTTAGTTCAAATCCCACGAC | 59.724 | 41.667 | 0.00 | 0.00 | 35.79 | 4.34 |
2651 | 2797 | 4.462133 | TGGTTTTAGTTCAAATCCCACGA | 58.538 | 39.130 | 0.00 | 0.00 | 35.79 | 4.35 |
2652 | 2798 | 4.839668 | TGGTTTTAGTTCAAATCCCACG | 57.160 | 40.909 | 0.00 | 0.00 | 35.79 | 4.94 |
2653 | 2799 | 6.156519 | GTCATGGTTTTAGTTCAAATCCCAC | 58.843 | 40.000 | 0.00 | 0.00 | 35.79 | 4.61 |
2654 | 2800 | 5.048364 | CGTCATGGTTTTAGTTCAAATCCCA | 60.048 | 40.000 | 0.00 | 0.00 | 35.79 | 4.37 |
2655 | 2801 | 5.182380 | TCGTCATGGTTTTAGTTCAAATCCC | 59.818 | 40.000 | 0.00 | 0.00 | 35.79 | 3.85 |
2656 | 2802 | 6.072673 | ACTCGTCATGGTTTTAGTTCAAATCC | 60.073 | 38.462 | 0.00 | 0.00 | 36.77 | 3.01 |
2657 | 2803 | 6.899114 | ACTCGTCATGGTTTTAGTTCAAATC | 58.101 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2658 | 2804 | 6.877611 | ACTCGTCATGGTTTTAGTTCAAAT | 57.122 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2659 | 2805 | 7.789273 | TTACTCGTCATGGTTTTAGTTCAAA | 57.211 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2660 | 2806 | 7.789273 | TTTACTCGTCATGGTTTTAGTTCAA | 57.211 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2661 | 2807 | 7.148705 | CGATTTACTCGTCATGGTTTTAGTTCA | 60.149 | 37.037 | 0.00 | 0.00 | 42.56 | 3.18 |
2662 | 2808 | 7.171434 | CGATTTACTCGTCATGGTTTTAGTTC | 58.829 | 38.462 | 0.00 | 0.00 | 42.56 | 3.01 |
2663 | 2809 | 6.091713 | CCGATTTACTCGTCATGGTTTTAGTT | 59.908 | 38.462 | 0.00 | 0.00 | 46.18 | 2.24 |
2664 | 2810 | 5.579511 | CCGATTTACTCGTCATGGTTTTAGT | 59.420 | 40.000 | 0.00 | 0.00 | 46.18 | 2.24 |
2665 | 2811 | 5.808540 | TCCGATTTACTCGTCATGGTTTTAG | 59.191 | 40.000 | 0.00 | 0.00 | 46.18 | 1.85 |
2666 | 2812 | 5.722263 | TCCGATTTACTCGTCATGGTTTTA | 58.278 | 37.500 | 0.00 | 0.00 | 46.18 | 1.52 |
2667 | 2813 | 4.571919 | TCCGATTTACTCGTCATGGTTTT | 58.428 | 39.130 | 0.00 | 0.00 | 46.18 | 2.43 |
2668 | 2814 | 4.196626 | TCCGATTTACTCGTCATGGTTT | 57.803 | 40.909 | 0.00 | 0.00 | 46.18 | 3.27 |
2669 | 2815 | 3.880047 | TCCGATTTACTCGTCATGGTT | 57.120 | 42.857 | 0.00 | 0.00 | 46.18 | 3.67 |
2670 | 2816 | 3.518590 | GTTCCGATTTACTCGTCATGGT | 58.481 | 45.455 | 0.00 | 0.00 | 46.18 | 3.55 |
2671 | 2817 | 2.534349 | CGTTCCGATTTACTCGTCATGG | 59.466 | 50.000 | 0.00 | 0.00 | 46.18 | 3.66 |
2672 | 2818 | 2.534349 | CCGTTCCGATTTACTCGTCATG | 59.466 | 50.000 | 0.00 | 0.00 | 46.18 | 3.07 |
2673 | 2819 | 2.424601 | TCCGTTCCGATTTACTCGTCAT | 59.575 | 45.455 | 0.00 | 0.00 | 46.18 | 3.06 |
2674 | 2820 | 1.811965 | TCCGTTCCGATTTACTCGTCA | 59.188 | 47.619 | 0.00 | 0.00 | 46.18 | 4.35 |
2675 | 2821 | 2.448219 | CTCCGTTCCGATTTACTCGTC | 58.552 | 52.381 | 0.00 | 0.00 | 46.18 | 4.20 |
2676 | 2822 | 1.133790 | CCTCCGTTCCGATTTACTCGT | 59.866 | 52.381 | 0.00 | 0.00 | 46.18 | 4.18 |
2678 | 2824 | 1.753073 | TCCCTCCGTTCCGATTTACTC | 59.247 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
2679 | 2825 | 1.755380 | CTCCCTCCGTTCCGATTTACT | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
2680 | 2826 | 1.479730 | ACTCCCTCCGTTCCGATTTAC | 59.520 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
2681 | 2827 | 1.856629 | ACTCCCTCCGTTCCGATTTA | 58.143 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2682 | 2828 | 1.479730 | GTACTCCCTCCGTTCCGATTT | 59.520 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
2683 | 2829 | 1.109609 | GTACTCCCTCCGTTCCGATT | 58.890 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2684 | 2830 | 0.033796 | TGTACTCCCTCCGTTCCGAT | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2685 | 2831 | 0.033796 | ATGTACTCCCTCCGTTCCGA | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
2686 | 2832 | 0.102481 | CATGTACTCCCTCCGTTCCG | 59.898 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2687 | 2833 | 1.192428 | ACATGTACTCCCTCCGTTCC | 58.808 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2688 | 2834 | 4.667519 | ATTACATGTACTCCCTCCGTTC | 57.332 | 45.455 | 4.68 | 0.00 | 0.00 | 3.95 |
2689 | 2835 | 5.431179 | AAATTACATGTACTCCCTCCGTT | 57.569 | 39.130 | 4.68 | 0.00 | 0.00 | 4.44 |
2690 | 2836 | 5.659971 | AGTAAATTACATGTACTCCCTCCGT | 59.340 | 40.000 | 4.68 | 0.00 | 0.00 | 4.69 |
2691 | 2837 | 6.040616 | AGAGTAAATTACATGTACTCCCTCCG | 59.959 | 42.308 | 18.00 | 0.00 | 43.11 | 4.63 |
2692 | 2838 | 7.362802 | AGAGTAAATTACATGTACTCCCTCC | 57.637 | 40.000 | 18.00 | 2.99 | 43.11 | 4.30 |
2693 | 2839 | 9.134055 | ACTAGAGTAAATTACATGTACTCCCTC | 57.866 | 37.037 | 18.00 | 13.35 | 43.11 | 4.30 |
2726 | 2874 | 5.870978 | CCCCAAATAGAAAAGTTCAAGCATG | 59.129 | 40.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2772 | 3002 | 6.012337 | TGGGAATCATGCCTCTTTATACAA | 57.988 | 37.500 | 0.00 | 0.00 | 38.04 | 2.41 |
2880 | 3111 | 7.230510 | TGGTGCAAACAAACTATGAAATCTACT | 59.769 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2912 | 3151 | 9.802039 | TGAAACTATAATGGTAACCAAAACTCT | 57.198 | 29.630 | 0.00 | 0.00 | 36.95 | 3.24 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.