Multiple sequence alignment - TraesCS5B01G478700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G478700 | chr5B | 100.000 | 3224 | 0 | 0 | 1 | 3224 | 650340458 | 650337235 | 0.000000e+00 | 5954.0 |
1 | TraesCS5B01G478700 | chr5B | 93.701 | 635 | 34 | 4 | 2596 | 3224 | 420865705 | 420865071 | 0.000000e+00 | 946.0 |
2 | TraesCS5B01G478700 | chr5D | 93.305 | 1852 | 86 | 18 | 657 | 2489 | 517754474 | 517752642 | 0.000000e+00 | 2699.0 |
3 | TraesCS5B01G478700 | chr5D | 87.788 | 434 | 42 | 5 | 1 | 425 | 517755296 | 517754865 | 6.210000e-137 | 497.0 |
4 | TraesCS5B01G478700 | chr5D | 86.207 | 87 | 7 | 5 | 2258 | 2341 | 281024790 | 281024874 | 4.430000e-14 | 89.8 |
5 | TraesCS5B01G478700 | chr5A | 91.213 | 1673 | 91 | 38 | 631 | 2285 | 645128406 | 645126772 | 0.000000e+00 | 2224.0 |
6 | TraesCS5B01G478700 | chr5A | 87.529 | 433 | 33 | 8 | 1 | 425 | 645128931 | 645128512 | 6.260000e-132 | 481.0 |
7 | TraesCS5B01G478700 | chr4B | 94.304 | 632 | 31 | 5 | 2597 | 3224 | 627816799 | 627817429 | 0.000000e+00 | 963.0 |
8 | TraesCS5B01G478700 | chr4B | 93.671 | 632 | 32 | 7 | 2598 | 3222 | 590039026 | 590039656 | 0.000000e+00 | 939.0 |
9 | TraesCS5B01G478700 | chr4B | 87.500 | 80 | 6 | 4 | 2264 | 2341 | 178077841 | 178077918 | 4.430000e-14 | 89.8 |
10 | TraesCS5B01G478700 | chr4B | 88.889 | 72 | 5 | 3 | 2257 | 2325 | 41531416 | 41531487 | 5.730000e-13 | 86.1 |
11 | TraesCS5B01G478700 | chr2B | 93.839 | 633 | 35 | 4 | 2596 | 3224 | 680107016 | 680106384 | 0.000000e+00 | 950.0 |
12 | TraesCS5B01G478700 | chr2B | 93.701 | 635 | 33 | 6 | 2596 | 3224 | 149031588 | 149030955 | 0.000000e+00 | 944.0 |
13 | TraesCS5B01G478700 | chr7B | 93.681 | 633 | 35 | 5 | 2596 | 3224 | 664069123 | 664069754 | 0.000000e+00 | 942.0 |
14 | TraesCS5B01G478700 | chr7B | 73.743 | 179 | 31 | 13 | 1467 | 1637 | 337024231 | 337024061 | 4.490000e-04 | 56.5 |
15 | TraesCS5B01G478700 | chr6B | 93.523 | 633 | 37 | 4 | 2596 | 3224 | 578449506 | 578448874 | 0.000000e+00 | 939.0 |
16 | TraesCS5B01G478700 | chr6B | 93.365 | 633 | 38 | 4 | 2596 | 3224 | 571024614 | 571023982 | 0.000000e+00 | 933.0 |
17 | TraesCS5B01G478700 | chr3B | 93.513 | 632 | 37 | 4 | 2596 | 3224 | 502312185 | 502311555 | 0.000000e+00 | 937.0 |
18 | TraesCS5B01G478700 | chr1A | 90.789 | 76 | 4 | 2 | 2267 | 2341 | 10076111 | 10076184 | 7.360000e-17 | 99.0 |
19 | TraesCS5B01G478700 | chr1A | 86.364 | 88 | 8 | 3 | 2258 | 2343 | 11940814 | 11940899 | 3.420000e-15 | 93.5 |
20 | TraesCS5B01G478700 | chr1A | 96.875 | 32 | 0 | 1 | 1945 | 1976 | 537977645 | 537977675 | 6.000000e-03 | 52.8 |
21 | TraesCS5B01G478700 | chr4D | 87.342 | 79 | 7 | 3 | 2264 | 2341 | 116276833 | 116276909 | 1.590000e-13 | 87.9 |
22 | TraesCS5B01G478700 | chr4A | 85.057 | 87 | 8 | 5 | 2258 | 2341 | 467263408 | 467263324 | 2.060000e-12 | 84.2 |
23 | TraesCS5B01G478700 | chr7A | 84.091 | 88 | 10 | 4 | 2256 | 2341 | 634962435 | 634962350 | 7.410000e-12 | 82.4 |
24 | TraesCS5B01G478700 | chr7A | 100.000 | 29 | 0 | 0 | 1609 | 1637 | 200509850 | 200509822 | 2.000000e-03 | 54.7 |
25 | TraesCS5B01G478700 | chr7D | 100.000 | 29 | 0 | 0 | 1609 | 1637 | 191796255 | 191796227 | 2.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G478700 | chr5B | 650337235 | 650340458 | 3223 | True | 5954.0 | 5954 | 100.0000 | 1 | 3224 | 1 | chr5B.!!$R2 | 3223 |
1 | TraesCS5B01G478700 | chr5B | 420865071 | 420865705 | 634 | True | 946.0 | 946 | 93.7010 | 2596 | 3224 | 1 | chr5B.!!$R1 | 628 |
2 | TraesCS5B01G478700 | chr5D | 517752642 | 517755296 | 2654 | True | 1598.0 | 2699 | 90.5465 | 1 | 2489 | 2 | chr5D.!!$R1 | 2488 |
3 | TraesCS5B01G478700 | chr5A | 645126772 | 645128931 | 2159 | True | 1352.5 | 2224 | 89.3710 | 1 | 2285 | 2 | chr5A.!!$R1 | 2284 |
4 | TraesCS5B01G478700 | chr4B | 627816799 | 627817429 | 630 | False | 963.0 | 963 | 94.3040 | 2597 | 3224 | 1 | chr4B.!!$F4 | 627 |
5 | TraesCS5B01G478700 | chr4B | 590039026 | 590039656 | 630 | False | 939.0 | 939 | 93.6710 | 2598 | 3222 | 1 | chr4B.!!$F3 | 624 |
6 | TraesCS5B01G478700 | chr2B | 680106384 | 680107016 | 632 | True | 950.0 | 950 | 93.8390 | 2596 | 3224 | 1 | chr2B.!!$R2 | 628 |
7 | TraesCS5B01G478700 | chr2B | 149030955 | 149031588 | 633 | True | 944.0 | 944 | 93.7010 | 2596 | 3224 | 1 | chr2B.!!$R1 | 628 |
8 | TraesCS5B01G478700 | chr7B | 664069123 | 664069754 | 631 | False | 942.0 | 942 | 93.6810 | 2596 | 3224 | 1 | chr7B.!!$F1 | 628 |
9 | TraesCS5B01G478700 | chr6B | 578448874 | 578449506 | 632 | True | 939.0 | 939 | 93.5230 | 2596 | 3224 | 1 | chr6B.!!$R2 | 628 |
10 | TraesCS5B01G478700 | chr6B | 571023982 | 571024614 | 632 | True | 933.0 | 933 | 93.3650 | 2596 | 3224 | 1 | chr6B.!!$R1 | 628 |
11 | TraesCS5B01G478700 | chr3B | 502311555 | 502312185 | 630 | True | 937.0 | 937 | 93.5130 | 2596 | 3224 | 1 | chr3B.!!$R1 | 628 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
788 | 1038 | 0.105039 | GATGGATGTCCTCGTCACCC | 59.895 | 60.0 | 0.09 | 0.0 | 36.82 | 4.61 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2341 | 2614 | 0.172578 | GGCCCTTAACCGCAATCAAC | 59.827 | 55.0 | 0.0 | 0.0 | 0.0 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
52 | 53 | 2.012673 | GTGCTGCGGAAGATTGAGAAT | 58.987 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
55 | 56 | 2.421424 | GCTGCGGAAGATTGAGAATGTT | 59.579 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
67 | 68 | 0.670546 | AGAATGTTGCGACTGGACCG | 60.671 | 55.000 | 5.50 | 0.00 | 0.00 | 4.79 |
76 | 77 | 1.364901 | GACTGGACCGAACAACCGA | 59.635 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
88 | 89 | 2.110213 | AACCGACCGAAGCTTGCA | 59.890 | 55.556 | 2.10 | 0.00 | 0.00 | 4.08 |
109 | 110 | 0.457853 | GCGTGATAAGCGAGTGTGGA | 60.458 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
126 | 128 | 3.194062 | GTGGAGAGATGTAGCTTGCTTC | 58.806 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
130 | 132 | 2.100584 | AGAGATGTAGCTTGCTTCTCGG | 59.899 | 50.000 | 18.93 | 0.00 | 40.15 | 4.63 |
189 | 191 | 6.591935 | TGAAAGTACTGAATCACTGGAAACT | 58.408 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
192 | 194 | 6.174720 | AGTACTGAATCACTGGAAACTGAA | 57.825 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
201 | 203 | 3.999663 | CACTGGAAACTGAATGGAGTCTC | 59.000 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
246 | 255 | 2.857592 | ATTGTGAGCATGCGGAATTC | 57.142 | 45.000 | 13.01 | 4.35 | 0.00 | 2.17 |
247 | 256 | 1.825090 | TTGTGAGCATGCGGAATTCT | 58.175 | 45.000 | 13.01 | 0.00 | 0.00 | 2.40 |
285 | 294 | 3.185188 | GCAACATGTATCTGTATCAGCCG | 59.815 | 47.826 | 0.00 | 0.00 | 0.00 | 5.52 |
290 | 299 | 2.029020 | TGTATCTGTATCAGCCGATGCC | 60.029 | 50.000 | 0.00 | 0.00 | 38.69 | 4.40 |
302 | 311 | 0.462047 | CCGATGCCGTAGAGCCTTTT | 60.462 | 55.000 | 0.00 | 0.00 | 0.00 | 2.27 |
343 | 352 | 8.250332 | GGTGTTGAATAATATTGAAAGCAGGAA | 58.750 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
344 | 353 | 9.807649 | GTGTTGAATAATATTGAAAGCAGGAAT | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
367 | 376 | 2.816204 | TTGTGCATGTGGTTTGATGG | 57.184 | 45.000 | 0.00 | 0.00 | 0.00 | 3.51 |
377 | 386 | 1.251251 | GGTTTGATGGCTTCACTGCT | 58.749 | 50.000 | 2.09 | 0.00 | 32.84 | 4.24 |
381 | 390 | 0.958876 | TGATGGCTTCACTGCTGCTG | 60.959 | 55.000 | 4.89 | 4.89 | 0.00 | 4.41 |
391 | 401 | 3.151554 | TCACTGCTGCTGATTTGTTGAT | 58.848 | 40.909 | 13.69 | 0.00 | 0.00 | 2.57 |
396 | 406 | 5.001237 | TGCTGCTGATTTGTTGATTATGG | 57.999 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
417 | 427 | 0.894835 | GCCCCCAATTTGTCGTTCAT | 59.105 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
422 | 432 | 3.987220 | CCCCAATTTGTCGTTCATTCAAC | 59.013 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
425 | 435 | 4.444056 | CCAATTTGTCGTTCATTCAACCAC | 59.556 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
427 | 437 | 3.684103 | TTGTCGTTCATTCAACCACAC | 57.316 | 42.857 | 0.00 | 0.00 | 36.01 | 3.82 |
429 | 439 | 3.275143 | TGTCGTTCATTCAACCACACTT | 58.725 | 40.909 | 0.00 | 0.00 | 31.80 | 3.16 |
430 | 440 | 4.443621 | TGTCGTTCATTCAACCACACTTA | 58.556 | 39.130 | 0.00 | 0.00 | 31.80 | 2.24 |
431 | 441 | 5.060506 | TGTCGTTCATTCAACCACACTTAT | 58.939 | 37.500 | 0.00 | 0.00 | 31.80 | 1.73 |
432 | 442 | 5.529430 | TGTCGTTCATTCAACCACACTTATT | 59.471 | 36.000 | 0.00 | 0.00 | 31.80 | 1.40 |
433 | 443 | 6.038825 | TGTCGTTCATTCAACCACACTTATTT | 59.961 | 34.615 | 0.00 | 0.00 | 31.80 | 1.40 |
434 | 444 | 7.226918 | TGTCGTTCATTCAACCACACTTATTTA | 59.773 | 33.333 | 0.00 | 0.00 | 31.80 | 1.40 |
435 | 445 | 8.234546 | GTCGTTCATTCAACCACACTTATTTAT | 58.765 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
436 | 446 | 8.788806 | TCGTTCATTCAACCACACTTATTTATT | 58.211 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
437 | 447 | 9.405587 | CGTTCATTCAACCACACTTATTTATTT | 57.594 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
459 | 469 | 1.403814 | TTTTTGCGGGTGTTCATCCA | 58.596 | 45.000 | 2.95 | 0.00 | 0.00 | 3.41 |
460 | 470 | 1.403814 | TTTTGCGGGTGTTCATCCAA | 58.596 | 45.000 | 2.95 | 0.00 | 0.00 | 3.53 |
461 | 471 | 0.671251 | TTTGCGGGTGTTCATCCAAC | 59.329 | 50.000 | 2.95 | 0.00 | 35.28 | 3.77 |
462 | 472 | 1.175983 | TTGCGGGTGTTCATCCAACC | 61.176 | 55.000 | 2.95 | 0.00 | 38.93 | 3.77 |
463 | 473 | 1.602323 | GCGGGTGTTCATCCAACCA | 60.602 | 57.895 | 2.95 | 0.00 | 42.70 | 3.67 |
464 | 474 | 1.862602 | GCGGGTGTTCATCCAACCAC | 61.863 | 60.000 | 2.95 | 0.00 | 42.70 | 4.16 |
465 | 475 | 0.536233 | CGGGTGTTCATCCAACCACA | 60.536 | 55.000 | 2.95 | 0.00 | 42.70 | 4.17 |
466 | 476 | 0.958822 | GGGTGTTCATCCAACCACAC | 59.041 | 55.000 | 0.00 | 0.00 | 42.10 | 3.82 |
467 | 477 | 1.478654 | GGGTGTTCATCCAACCACACT | 60.479 | 52.381 | 0.00 | 0.00 | 42.10 | 3.55 |
468 | 478 | 2.306847 | GGTGTTCATCCAACCACACTT | 58.693 | 47.619 | 0.00 | 0.00 | 39.63 | 3.16 |
485 | 495 | 3.134804 | ACACTTGCTCTGATATACCACCC | 59.865 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
487 | 497 | 0.679505 | TGCTCTGATATACCACCCGC | 59.320 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
488 | 498 | 0.969894 | GCTCTGATATACCACCCGCT | 59.030 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
489 | 499 | 1.067495 | GCTCTGATATACCACCCGCTC | 60.067 | 57.143 | 0.00 | 0.00 | 0.00 | 5.03 |
490 | 500 | 1.546476 | CTCTGATATACCACCCGCTCC | 59.454 | 57.143 | 0.00 | 0.00 | 0.00 | 4.70 |
491 | 501 | 1.133294 | TCTGATATACCACCCGCTCCA | 60.133 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
492 | 502 | 1.000955 | CTGATATACCACCCGCTCCAC | 59.999 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
493 | 503 | 1.045407 | GATATACCACCCGCTCCACA | 58.955 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
494 | 504 | 0.756903 | ATATACCACCCGCTCCACAC | 59.243 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
495 | 505 | 0.615261 | TATACCACCCGCTCCACACA | 60.615 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
496 | 506 | 1.899437 | ATACCACCCGCTCCACACAG | 61.899 | 60.000 | 0.00 | 0.00 | 0.00 | 3.66 |
497 | 507 | 3.941188 | CCACCCGCTCCACACAGT | 61.941 | 66.667 | 0.00 | 0.00 | 0.00 | 3.55 |
498 | 508 | 2.111043 | CACCCGCTCCACACAGTT | 59.889 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
499 | 509 | 1.525995 | CACCCGCTCCACACAGTTT | 60.526 | 57.895 | 0.00 | 0.00 | 0.00 | 2.66 |
500 | 510 | 1.101049 | CACCCGCTCCACACAGTTTT | 61.101 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
501 | 511 | 1.101049 | ACCCGCTCCACACAGTTTTG | 61.101 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
502 | 512 | 1.101049 | CCCGCTCCACACAGTTTTGT | 61.101 | 55.000 | 0.00 | 0.00 | 38.31 | 2.83 |
503 | 513 | 0.738389 | CCGCTCCACACAGTTTTGTT | 59.262 | 50.000 | 0.00 | 0.00 | 34.62 | 2.83 |
504 | 514 | 1.134175 | CCGCTCCACACAGTTTTGTTT | 59.866 | 47.619 | 0.00 | 0.00 | 34.62 | 2.83 |
505 | 515 | 2.416701 | CCGCTCCACACAGTTTTGTTTT | 60.417 | 45.455 | 0.00 | 0.00 | 34.62 | 2.43 |
506 | 516 | 3.249917 | CGCTCCACACAGTTTTGTTTTT | 58.750 | 40.909 | 0.00 | 0.00 | 34.62 | 1.94 |
507 | 517 | 3.303229 | CGCTCCACACAGTTTTGTTTTTC | 59.697 | 43.478 | 0.00 | 0.00 | 34.62 | 2.29 |
508 | 518 | 4.494484 | GCTCCACACAGTTTTGTTTTTCT | 58.506 | 39.130 | 0.00 | 0.00 | 34.62 | 2.52 |
509 | 519 | 4.929211 | GCTCCACACAGTTTTGTTTTTCTT | 59.071 | 37.500 | 0.00 | 0.00 | 34.62 | 2.52 |
510 | 520 | 5.062183 | GCTCCACACAGTTTTGTTTTTCTTC | 59.938 | 40.000 | 0.00 | 0.00 | 34.62 | 2.87 |
511 | 521 | 6.339587 | TCCACACAGTTTTGTTTTTCTTCT | 57.660 | 33.333 | 0.00 | 0.00 | 34.62 | 2.85 |
512 | 522 | 6.386654 | TCCACACAGTTTTGTTTTTCTTCTC | 58.613 | 36.000 | 0.00 | 0.00 | 34.62 | 2.87 |
513 | 523 | 6.208599 | TCCACACAGTTTTGTTTTTCTTCTCT | 59.791 | 34.615 | 0.00 | 0.00 | 34.62 | 3.10 |
514 | 524 | 7.392113 | TCCACACAGTTTTGTTTTTCTTCTCTA | 59.608 | 33.333 | 0.00 | 0.00 | 34.62 | 2.43 |
515 | 525 | 8.190784 | CCACACAGTTTTGTTTTTCTTCTCTAT | 58.809 | 33.333 | 0.00 | 0.00 | 34.62 | 1.98 |
516 | 526 | 9.573133 | CACACAGTTTTGTTTTTCTTCTCTATT | 57.427 | 29.630 | 0.00 | 0.00 | 34.62 | 1.73 |
517 | 527 | 9.788960 | ACACAGTTTTGTTTTTCTTCTCTATTC | 57.211 | 29.630 | 0.00 | 0.00 | 34.62 | 1.75 |
550 | 561 | 6.605471 | TTTTAGCTCTGTCACTATCTTCCA | 57.395 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
553 | 564 | 4.348486 | AGCTCTGTCACTATCTTCCAAGA | 58.652 | 43.478 | 0.00 | 0.00 | 39.78 | 3.02 |
554 | 565 | 4.961730 | AGCTCTGTCACTATCTTCCAAGAT | 59.038 | 41.667 | 7.01 | 7.01 | 46.85 | 2.40 |
556 | 567 | 6.782000 | AGCTCTGTCACTATCTTCCAAGATAT | 59.218 | 38.462 | 9.07 | 0.00 | 44.54 | 1.63 |
558 | 569 | 8.580720 | GCTCTGTCACTATCTTCCAAGATATAA | 58.419 | 37.037 | 9.07 | 0.00 | 44.54 | 0.98 |
570 | 581 | 8.705594 | TCTTCCAAGATATAATAATCGATCCCC | 58.294 | 37.037 | 0.00 | 0.00 | 0.00 | 4.81 |
571 | 582 | 8.624019 | TTCCAAGATATAATAATCGATCCCCT | 57.376 | 34.615 | 0.00 | 0.00 | 0.00 | 4.79 |
573 | 584 | 8.068110 | TCCAAGATATAATAATCGATCCCCTCT | 58.932 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
581 | 592 | 4.344359 | AATCGATCCCCTCTAAAAGAGC | 57.656 | 45.455 | 0.00 | 0.00 | 40.98 | 4.09 |
582 | 593 | 2.747177 | TCGATCCCCTCTAAAAGAGCA | 58.253 | 47.619 | 0.00 | 0.00 | 40.98 | 4.26 |
583 | 594 | 3.309296 | TCGATCCCCTCTAAAAGAGCAT | 58.691 | 45.455 | 0.00 | 0.00 | 40.98 | 3.79 |
584 | 595 | 3.070159 | TCGATCCCCTCTAAAAGAGCATG | 59.930 | 47.826 | 0.00 | 0.00 | 40.98 | 4.06 |
585 | 596 | 3.070159 | CGATCCCCTCTAAAAGAGCATGA | 59.930 | 47.826 | 0.00 | 0.00 | 40.98 | 3.07 |
587 | 598 | 5.047021 | CGATCCCCTCTAAAAGAGCATGATA | 60.047 | 44.000 | 0.00 | 0.00 | 40.98 | 2.15 |
589 | 600 | 6.770286 | TCCCCTCTAAAAGAGCATGATAAT | 57.230 | 37.500 | 0.00 | 0.00 | 40.98 | 1.28 |
590 | 601 | 7.154191 | TCCCCTCTAAAAGAGCATGATAATT | 57.846 | 36.000 | 0.00 | 0.00 | 40.98 | 1.40 |
591 | 602 | 8.275187 | TCCCCTCTAAAAGAGCATGATAATTA | 57.725 | 34.615 | 0.00 | 0.00 | 40.98 | 1.40 |
592 | 603 | 8.723365 | TCCCCTCTAAAAGAGCATGATAATTAA | 58.277 | 33.333 | 0.00 | 0.00 | 40.98 | 1.40 |
637 | 813 | 4.074259 | ACTGTTCCGGGGTATAACAAAAC | 58.926 | 43.478 | 0.00 | 0.00 | 33.05 | 2.43 |
641 | 817 | 4.013267 | TCCGGGGTATAACAAAACGAAA | 57.987 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
642 | 818 | 4.587891 | TCCGGGGTATAACAAAACGAAAT | 58.412 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
649 | 855 | 7.652507 | GGGGTATAACAAAACGAAATTGTTTGA | 59.347 | 33.333 | 17.88 | 6.77 | 45.97 | 2.69 |
651 | 857 | 8.696175 | GGTATAACAAAACGAAATTGTTTGAGG | 58.304 | 33.333 | 17.88 | 0.00 | 45.97 | 3.86 |
665 | 871 | 4.601084 | TGTTTGAGGTACCAGGAACAAAA | 58.399 | 39.130 | 15.94 | 1.03 | 0.00 | 2.44 |
719 | 966 | 2.542178 | GTCAATATACCGACGCAATGCA | 59.458 | 45.455 | 5.91 | 0.00 | 0.00 | 3.96 |
742 | 989 | 2.335011 | GGCTGCCACGAACAAACC | 59.665 | 61.111 | 15.17 | 0.00 | 0.00 | 3.27 |
788 | 1038 | 0.105039 | GATGGATGTCCTCGTCACCC | 59.895 | 60.000 | 0.09 | 0.00 | 36.82 | 4.61 |
789 | 1039 | 0.617535 | ATGGATGTCCTCGTCACCCA | 60.618 | 55.000 | 0.09 | 0.00 | 36.82 | 4.51 |
799 | 1049 | 1.745115 | CGTCACCCAATCATGCGGT | 60.745 | 57.895 | 0.00 | 0.00 | 32.37 | 5.68 |
979 | 1229 | 2.229543 | CGGGGGTTAAGCTTAAAACACC | 59.770 | 50.000 | 23.89 | 23.89 | 46.54 | 4.16 |
1015 | 1269 | 0.820482 | GTCGAGCTCCTAGGGTCTCC | 60.820 | 65.000 | 19.10 | 7.99 | 0.00 | 3.71 |
1025 | 1279 | 2.838693 | GGGTCTCCCTCTACCGCC | 60.839 | 72.222 | 0.00 | 0.00 | 41.34 | 6.13 |
1026 | 1280 | 2.043248 | GGTCTCCCTCTACCGCCA | 60.043 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
1484 | 1738 | 2.030562 | CGTCACCGGCACCTTCTT | 59.969 | 61.111 | 0.00 | 0.00 | 0.00 | 2.52 |
2073 | 2335 | 0.701303 | CTGTCGTTAGTCGTCGTTGC | 59.299 | 55.000 | 0.00 | 0.00 | 40.80 | 4.17 |
2098 | 2360 | 4.097286 | TCTTTTCTTTTTGGAAGACGTGGG | 59.903 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
2176 | 2445 | 3.407252 | CGCGAACAATCTTGTGTGTATG | 58.593 | 45.455 | 0.00 | 0.00 | 41.31 | 2.39 |
2201 | 2471 | 7.147794 | TGGACTGTGTAAACGGAATCTATACAT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
2202 | 2472 | 7.169308 | GGACTGTGTAAACGGAATCTATACATG | 59.831 | 40.741 | 0.00 | 0.00 | 0.00 | 3.21 |
2264 | 2535 | 1.829222 | TCTCCGTGAACAATACTCCCC | 59.171 | 52.381 | 0.00 | 0.00 | 0.00 | 4.81 |
2281 | 2554 | 4.019231 | ACTCCCCCTCTCAAAATGTAAGAC | 60.019 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
2311 | 2584 | 9.917129 | TTTTAGCCTAAATTAGCCTACAAAAAC | 57.083 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
2325 | 2598 | 9.005777 | AGCCTACAAAAACGTCTTATATTTTGA | 57.994 | 29.630 | 21.46 | 9.08 | 42.48 | 2.69 |
2364 | 2637 | 0.107165 | ATTGCGGTTAAGGGCCTCTC | 60.107 | 55.000 | 6.46 | 0.00 | 0.00 | 3.20 |
2366 | 2639 | 0.324923 | TGCGGTTAAGGGCCTCTCTA | 60.325 | 55.000 | 6.46 | 0.00 | 0.00 | 2.43 |
2382 | 2655 | 6.928492 | GGCCTCTCTAATTCACAAGATTCTAG | 59.072 | 42.308 | 0.00 | 0.00 | 0.00 | 2.43 |
2385 | 2658 | 8.359642 | CCTCTCTAATTCACAAGATTCTAGGAG | 58.640 | 40.741 | 0.00 | 0.00 | 0.00 | 3.69 |
2392 | 2665 | 5.240891 | TCACAAGATTCTAGGAGTGCAAAG | 58.759 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
2413 | 2686 | 7.384115 | GCAAAGATAGGAAAACAAAAGGGTTAC | 59.616 | 37.037 | 0.00 | 0.00 | 0.00 | 2.50 |
2421 | 2694 | 9.772973 | AGGAAAACAAAAGGGTTACAATATTTC | 57.227 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
2474 | 2747 | 3.874392 | ATTTTTGCGGGAGAAATCCTG | 57.126 | 42.857 | 0.00 | 0.00 | 39.14 | 3.86 |
2480 | 2753 | 3.305720 | TGCGGGAGAAATCCTGTAGTAT | 58.694 | 45.455 | 5.08 | 0.00 | 38.40 | 2.12 |
2489 | 2762 | 9.110502 | GGAGAAATCCTGTAGTATTTTAGGTTG | 57.889 | 37.037 | 0.00 | 0.00 | 0.00 | 3.77 |
2490 | 2763 | 8.507524 | AGAAATCCTGTAGTATTTTAGGTTGC | 57.492 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
2491 | 2764 | 7.556635 | AGAAATCCTGTAGTATTTTAGGTTGCC | 59.443 | 37.037 | 0.00 | 0.00 | 0.00 | 4.52 |
2492 | 2765 | 5.106876 | TCCTGTAGTATTTTAGGTTGCCC | 57.893 | 43.478 | 0.00 | 0.00 | 0.00 | 5.36 |
2493 | 2766 | 4.080186 | TCCTGTAGTATTTTAGGTTGCCCC | 60.080 | 45.833 | 0.00 | 0.00 | 0.00 | 5.80 |
2494 | 2767 | 4.204799 | CTGTAGTATTTTAGGTTGCCCCC | 58.795 | 47.826 | 0.00 | 0.00 | 0.00 | 5.40 |
2495 | 2768 | 3.853784 | TGTAGTATTTTAGGTTGCCCCCT | 59.146 | 43.478 | 0.00 | 0.00 | 38.70 | 4.79 |
2496 | 2769 | 4.292836 | TGTAGTATTTTAGGTTGCCCCCTT | 59.707 | 41.667 | 0.00 | 0.00 | 35.97 | 3.95 |
2497 | 2770 | 4.413641 | AGTATTTTAGGTTGCCCCCTTT | 57.586 | 40.909 | 0.00 | 0.00 | 35.97 | 3.11 |
2498 | 2771 | 4.093743 | AGTATTTTAGGTTGCCCCCTTTG | 58.906 | 43.478 | 0.00 | 0.00 | 35.97 | 2.77 |
2499 | 2772 | 2.480642 | TTTTAGGTTGCCCCCTTTGT | 57.519 | 45.000 | 0.00 | 0.00 | 35.97 | 2.83 |
2500 | 2773 | 2.480642 | TTTAGGTTGCCCCCTTTGTT | 57.519 | 45.000 | 0.00 | 0.00 | 35.97 | 2.83 |
2501 | 2774 | 2.003937 | TTAGGTTGCCCCCTTTGTTC | 57.996 | 50.000 | 0.00 | 0.00 | 35.97 | 3.18 |
2502 | 2775 | 0.250989 | TAGGTTGCCCCCTTTGTTCG | 60.251 | 55.000 | 0.00 | 0.00 | 35.97 | 3.95 |
2503 | 2776 | 2.570284 | GGTTGCCCCCTTTGTTCGG | 61.570 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
2504 | 2777 | 2.203567 | TTGCCCCCTTTGTTCGGG | 60.204 | 61.111 | 0.00 | 0.00 | 41.59 | 5.14 |
2507 | 2780 | 3.083386 | CCCCCTTTGTTCGGGCTA | 58.917 | 61.111 | 0.00 | 0.00 | 40.54 | 3.93 |
2508 | 2781 | 1.378119 | CCCCCTTTGTTCGGGCTAC | 60.378 | 63.158 | 0.00 | 0.00 | 40.54 | 3.58 |
2509 | 2782 | 1.377229 | CCCCTTTGTTCGGGCTACA | 59.623 | 57.895 | 0.00 | 0.00 | 40.54 | 2.74 |
2510 | 2783 | 0.676782 | CCCCTTTGTTCGGGCTACAG | 60.677 | 60.000 | 0.00 | 0.00 | 40.54 | 2.74 |
2511 | 2784 | 0.323629 | CCCTTTGTTCGGGCTACAGA | 59.676 | 55.000 | 0.00 | 0.00 | 34.32 | 3.41 |
2512 | 2785 | 1.065418 | CCCTTTGTTCGGGCTACAGAT | 60.065 | 52.381 | 0.00 | 0.00 | 34.32 | 2.90 |
2513 | 2786 | 2.618045 | CCCTTTGTTCGGGCTACAGATT | 60.618 | 50.000 | 0.00 | 0.00 | 34.32 | 2.40 |
2514 | 2787 | 2.678336 | CCTTTGTTCGGGCTACAGATTC | 59.322 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2515 | 2788 | 2.396590 | TTGTTCGGGCTACAGATTCC | 57.603 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2516 | 2789 | 1.568504 | TGTTCGGGCTACAGATTCCT | 58.431 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2517 | 2790 | 1.207089 | TGTTCGGGCTACAGATTCCTG | 59.793 | 52.381 | 0.00 | 0.00 | 45.76 | 3.86 |
2518 | 2791 | 1.480954 | GTTCGGGCTACAGATTCCTGA | 59.519 | 52.381 | 0.00 | 0.00 | 43.02 | 3.86 |
2519 | 2792 | 1.403814 | TCGGGCTACAGATTCCTGAG | 58.596 | 55.000 | 0.00 | 0.00 | 43.02 | 3.35 |
2520 | 2793 | 1.063942 | TCGGGCTACAGATTCCTGAGA | 60.064 | 52.381 | 0.00 | 0.00 | 43.02 | 3.27 |
2521 | 2794 | 1.757118 | CGGGCTACAGATTCCTGAGAA | 59.243 | 52.381 | 0.00 | 0.00 | 43.02 | 2.87 |
2522 | 2795 | 2.366916 | CGGGCTACAGATTCCTGAGAAT | 59.633 | 50.000 | 0.00 | 0.00 | 45.63 | 2.40 |
2530 | 2803 | 2.131183 | GATTCCTGAGAATCGGCTTCG | 58.869 | 52.381 | 0.39 | 0.00 | 46.65 | 3.79 |
2531 | 2804 | 0.175760 | TTCCTGAGAATCGGCTTCGG | 59.824 | 55.000 | 0.00 | 0.00 | 41.22 | 4.30 |
2532 | 2805 | 1.884926 | CCTGAGAATCGGCTTCGGC | 60.885 | 63.158 | 0.00 | 0.00 | 41.22 | 5.54 |
2533 | 2806 | 1.142748 | CTGAGAATCGGCTTCGGCT | 59.857 | 57.895 | 0.00 | 0.00 | 38.61 | 5.52 |
2534 | 2807 | 0.460987 | CTGAGAATCGGCTTCGGCTT | 60.461 | 55.000 | 0.00 | 0.00 | 38.61 | 4.35 |
2535 | 2808 | 0.740868 | TGAGAATCGGCTTCGGCTTG | 60.741 | 55.000 | 0.00 | 0.00 | 38.61 | 4.01 |
2536 | 2809 | 1.432270 | GAGAATCGGCTTCGGCTTGG | 61.432 | 60.000 | 0.00 | 0.00 | 38.98 | 3.61 |
2537 | 2810 | 1.449601 | GAATCGGCTTCGGCTTGGA | 60.450 | 57.895 | 0.00 | 0.00 | 41.44 | 3.53 |
2538 | 2811 | 0.815615 | GAATCGGCTTCGGCTTGGAT | 60.816 | 55.000 | 0.00 | 0.00 | 41.44 | 3.41 |
2539 | 2812 | 0.394352 | AATCGGCTTCGGCTTGGATT | 60.394 | 50.000 | 0.00 | 0.00 | 41.44 | 3.01 |
2540 | 2813 | 0.815615 | ATCGGCTTCGGCTTGGATTC | 60.816 | 55.000 | 0.00 | 0.00 | 41.44 | 2.52 |
2541 | 2814 | 2.472909 | CGGCTTCGGCTTGGATTCC | 61.473 | 63.158 | 0.00 | 0.00 | 41.44 | 3.01 |
2542 | 2815 | 1.077429 | GGCTTCGGCTTGGATTCCT | 60.077 | 57.895 | 3.95 | 0.00 | 41.44 | 3.36 |
2543 | 2816 | 0.180406 | GGCTTCGGCTTGGATTCCTA | 59.820 | 55.000 | 3.95 | 0.00 | 41.44 | 2.94 |
2544 | 2817 | 1.408266 | GGCTTCGGCTTGGATTCCTAA | 60.408 | 52.381 | 3.95 | 0.00 | 41.44 | 2.69 |
2545 | 2818 | 2.365582 | GCTTCGGCTTGGATTCCTAAA | 58.634 | 47.619 | 3.95 | 0.00 | 38.08 | 1.85 |
2546 | 2819 | 2.752903 | GCTTCGGCTTGGATTCCTAAAA | 59.247 | 45.455 | 3.95 | 0.00 | 38.08 | 1.52 |
2547 | 2820 | 3.381590 | GCTTCGGCTTGGATTCCTAAAAT | 59.618 | 43.478 | 3.95 | 0.00 | 38.08 | 1.82 |
2548 | 2821 | 4.498177 | GCTTCGGCTTGGATTCCTAAAATC | 60.498 | 45.833 | 3.95 | 0.00 | 38.08 | 2.17 |
2549 | 2822 | 4.229304 | TCGGCTTGGATTCCTAAAATCA | 57.771 | 40.909 | 3.95 | 0.00 | 0.00 | 2.57 |
2550 | 2823 | 4.199310 | TCGGCTTGGATTCCTAAAATCAG | 58.801 | 43.478 | 3.95 | 0.00 | 0.00 | 2.90 |
2551 | 2824 | 3.243201 | CGGCTTGGATTCCTAAAATCAGC | 60.243 | 47.826 | 3.95 | 1.97 | 0.00 | 4.26 |
2552 | 2825 | 3.956848 | GGCTTGGATTCCTAAAATCAGCT | 59.043 | 43.478 | 3.95 | 0.00 | 30.75 | 4.24 |
2553 | 2826 | 5.133221 | GGCTTGGATTCCTAAAATCAGCTA | 58.867 | 41.667 | 3.95 | 0.00 | 30.75 | 3.32 |
2554 | 2827 | 5.009110 | GGCTTGGATTCCTAAAATCAGCTAC | 59.991 | 44.000 | 3.95 | 0.00 | 30.75 | 3.58 |
2555 | 2828 | 5.590259 | GCTTGGATTCCTAAAATCAGCTACA | 59.410 | 40.000 | 3.95 | 0.00 | 0.00 | 2.74 |
2556 | 2829 | 6.238593 | GCTTGGATTCCTAAAATCAGCTACAG | 60.239 | 42.308 | 3.95 | 0.00 | 0.00 | 2.74 |
2557 | 2830 | 6.313519 | TGGATTCCTAAAATCAGCTACAGT | 57.686 | 37.500 | 3.95 | 0.00 | 0.00 | 3.55 |
2558 | 2831 | 6.721318 | TGGATTCCTAAAATCAGCTACAGTT | 58.279 | 36.000 | 3.95 | 0.00 | 0.00 | 3.16 |
2559 | 2832 | 6.599244 | TGGATTCCTAAAATCAGCTACAGTTG | 59.401 | 38.462 | 3.95 | 0.00 | 0.00 | 3.16 |
2560 | 2833 | 5.880054 | TTCCTAAAATCAGCTACAGTTGC | 57.120 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
2561 | 2834 | 4.905429 | TCCTAAAATCAGCTACAGTTGCA | 58.095 | 39.130 | 9.75 | 0.00 | 0.00 | 4.08 |
2562 | 2835 | 4.937620 | TCCTAAAATCAGCTACAGTTGCAG | 59.062 | 41.667 | 9.75 | 1.26 | 0.00 | 4.41 |
2563 | 2836 | 4.937620 | CCTAAAATCAGCTACAGTTGCAGA | 59.062 | 41.667 | 9.75 | 7.14 | 0.00 | 4.26 |
2564 | 2837 | 5.587844 | CCTAAAATCAGCTACAGTTGCAGAT | 59.412 | 40.000 | 9.75 | 9.19 | 38.09 | 2.90 |
2565 | 2838 | 5.972107 | AAAATCAGCTACAGTTGCAGATT | 57.028 | 34.783 | 17.77 | 17.77 | 44.54 | 2.40 |
2566 | 2839 | 5.557891 | AAATCAGCTACAGTTGCAGATTC | 57.442 | 39.130 | 21.73 | 0.00 | 42.81 | 2.52 |
2567 | 2840 | 3.969287 | TCAGCTACAGTTGCAGATTCT | 57.031 | 42.857 | 9.75 | 0.00 | 0.00 | 2.40 |
2568 | 2841 | 3.593096 | TCAGCTACAGTTGCAGATTCTG | 58.407 | 45.455 | 9.40 | 9.40 | 35.60 | 3.02 |
2569 | 2842 | 3.259123 | TCAGCTACAGTTGCAGATTCTGA | 59.741 | 43.478 | 17.87 | 0.47 | 32.44 | 3.27 |
2570 | 2843 | 3.617706 | CAGCTACAGTTGCAGATTCTGAG | 59.382 | 47.826 | 17.87 | 5.04 | 32.44 | 3.35 |
2571 | 2844 | 3.513119 | AGCTACAGTTGCAGATTCTGAGA | 59.487 | 43.478 | 17.87 | 1.75 | 32.44 | 3.27 |
2572 | 2845 | 4.020751 | AGCTACAGTTGCAGATTCTGAGAA | 60.021 | 41.667 | 17.87 | 0.00 | 32.44 | 2.87 |
2573 | 2846 | 4.874966 | GCTACAGTTGCAGATTCTGAGAAT | 59.125 | 41.667 | 17.87 | 7.53 | 32.44 | 2.40 |
2574 | 2847 | 5.006552 | GCTACAGTTGCAGATTCTGAGAATC | 59.993 | 44.000 | 23.99 | 23.99 | 32.44 | 2.52 |
2591 | 2864 | 6.591935 | TGAGAATCAGAAGTAGGTTGTTTGT | 58.408 | 36.000 | 0.00 | 0.00 | 42.56 | 2.83 |
2592 | 2865 | 7.054124 | TGAGAATCAGAAGTAGGTTGTTTGTT | 58.946 | 34.615 | 0.00 | 0.00 | 42.56 | 2.83 |
2593 | 2866 | 7.556275 | TGAGAATCAGAAGTAGGTTGTTTGTTT | 59.444 | 33.333 | 0.00 | 0.00 | 42.56 | 2.83 |
2594 | 2867 | 8.974060 | AGAATCAGAAGTAGGTTGTTTGTTTA | 57.026 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
2645 | 2921 | 6.695713 | GGGTGAATAGGCGATTTTTACAAATC | 59.304 | 38.462 | 4.54 | 4.54 | 43.49 | 2.17 |
2732 | 3010 | 7.780745 | AGTACTCAGGTATAAGCATAACAGAGT | 59.219 | 37.037 | 10.64 | 10.64 | 46.83 | 3.24 |
2750 | 3028 | 8.709386 | AACAGAGTAACAACATAGTCATCATC | 57.291 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
2804 | 3082 | 2.420022 | CGTGAAAACAGGATAAGCAGGG | 59.580 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2837 | 3115 | 9.339850 | CTATGAGACTGAAGAAATTGGATTGAT | 57.660 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2923 | 3201 | 4.722526 | TGAGGAAATGAAAGGGTTGAGA | 57.277 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
3038 | 3317 | 3.802948 | AAACTCGAGAACACACAGTCT | 57.197 | 42.857 | 21.68 | 0.00 | 0.00 | 3.24 |
3044 | 3323 | 0.311165 | AGAACACACAGTCTCGGACG | 59.689 | 55.000 | 0.00 | 0.00 | 37.67 | 4.79 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
13 | 14 | 1.039785 | CGAGCAGACCATCTCCCAGA | 61.040 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
52 | 53 | 1.593209 | GTTCGGTCCAGTCGCAACA | 60.593 | 57.895 | 0.00 | 0.00 | 0.00 | 3.33 |
55 | 56 | 1.593209 | GTTGTTCGGTCCAGTCGCA | 60.593 | 57.895 | 0.00 | 0.00 | 0.00 | 5.10 |
67 | 68 | 0.234884 | CAAGCTTCGGTCGGTTGTTC | 59.765 | 55.000 | 0.00 | 0.00 | 35.70 | 3.18 |
76 | 77 | 2.669569 | ACGCATGCAAGCTTCGGT | 60.670 | 55.556 | 19.57 | 1.22 | 0.00 | 4.69 |
88 | 89 | 1.280982 | CACACTCGCTTATCACGCAT | 58.719 | 50.000 | 0.00 | 0.00 | 0.00 | 4.73 |
109 | 110 | 2.100584 | CCGAGAAGCAAGCTACATCTCT | 59.899 | 50.000 | 16.07 | 6.76 | 35.50 | 3.10 |
126 | 128 | 4.536687 | GAAATTGCCGCGCCCGAG | 62.537 | 66.667 | 0.00 | 0.00 | 36.29 | 4.63 |
130 | 132 | 2.715624 | CTAGGAAATTGCCGCGCC | 59.284 | 61.111 | 0.00 | 0.00 | 0.00 | 6.53 |
189 | 191 | 3.870274 | CAATGCTCTGAGACTCCATTCA | 58.130 | 45.455 | 9.28 | 0.00 | 0.00 | 2.57 |
192 | 194 | 1.838715 | AGCAATGCTCTGAGACTCCAT | 59.161 | 47.619 | 9.28 | 0.00 | 30.62 | 3.41 |
201 | 203 | 7.959689 | AGTAGATTAATACAGCAATGCTCTG | 57.040 | 36.000 | 4.03 | 0.00 | 36.40 | 3.35 |
246 | 255 | 2.245159 | TGCCAGTTTGTCAGAGTCAG | 57.755 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
247 | 256 | 2.288666 | GTTGCCAGTTTGTCAGAGTCA | 58.711 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
285 | 294 | 4.957759 | TTTTAAAAGGCTCTACGGCATC | 57.042 | 40.909 | 0.00 | 0.00 | 41.46 | 3.91 |
348 | 357 | 1.270199 | GCCATCAAACCACATGCACAA | 60.270 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
352 | 361 | 1.273048 | TGAAGCCATCAAACCACATGC | 59.727 | 47.619 | 0.00 | 0.00 | 34.30 | 4.06 |
363 | 372 | 0.675837 | TCAGCAGCAGTGAAGCCATC | 60.676 | 55.000 | 0.00 | 0.00 | 34.23 | 3.51 |
367 | 376 | 1.268899 | ACAAATCAGCAGCAGTGAAGC | 59.731 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
377 | 386 | 4.098349 | GGCTCCATAATCAACAAATCAGCA | 59.902 | 41.667 | 0.00 | 0.00 | 0.00 | 4.41 |
381 | 390 | 3.321968 | GGGGGCTCCATAATCAACAAATC | 59.678 | 47.826 | 4.16 | 0.00 | 35.00 | 2.17 |
391 | 401 | 2.745968 | GACAAATTGGGGGCTCCATAA | 58.254 | 47.619 | 7.09 | 0.00 | 46.52 | 1.90 |
396 | 406 | 0.526211 | GAACGACAAATTGGGGGCTC | 59.474 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
440 | 450 | 1.403814 | TGGATGAACACCCGCAAAAA | 58.596 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
441 | 451 | 1.067821 | GTTGGATGAACACCCGCAAAA | 59.932 | 47.619 | 0.00 | 0.00 | 34.35 | 2.44 |
442 | 452 | 0.671251 | GTTGGATGAACACCCGCAAA | 59.329 | 50.000 | 0.00 | 0.00 | 34.35 | 3.68 |
443 | 453 | 1.175983 | GGTTGGATGAACACCCGCAA | 61.176 | 55.000 | 0.00 | 0.00 | 36.12 | 4.85 |
444 | 454 | 1.602323 | GGTTGGATGAACACCCGCA | 60.602 | 57.895 | 0.00 | 0.00 | 36.12 | 5.69 |
445 | 455 | 1.602323 | TGGTTGGATGAACACCCGC | 60.602 | 57.895 | 0.00 | 0.00 | 36.12 | 6.13 |
446 | 456 | 0.536233 | TGTGGTTGGATGAACACCCG | 60.536 | 55.000 | 0.00 | 0.00 | 36.12 | 5.28 |
447 | 457 | 0.958822 | GTGTGGTTGGATGAACACCC | 59.041 | 55.000 | 0.00 | 0.00 | 37.53 | 4.61 |
448 | 458 | 1.981256 | AGTGTGGTTGGATGAACACC | 58.019 | 50.000 | 1.41 | 0.00 | 43.10 | 4.16 |
449 | 459 | 2.543653 | GCAAGTGTGGTTGGATGAACAC | 60.544 | 50.000 | 0.00 | 0.00 | 42.55 | 3.32 |
450 | 460 | 1.680735 | GCAAGTGTGGTTGGATGAACA | 59.319 | 47.619 | 0.00 | 0.00 | 36.12 | 3.18 |
451 | 461 | 1.956477 | AGCAAGTGTGGTTGGATGAAC | 59.044 | 47.619 | 0.00 | 0.00 | 28.67 | 3.18 |
452 | 462 | 2.158623 | AGAGCAAGTGTGGTTGGATGAA | 60.159 | 45.455 | 0.00 | 0.00 | 35.00 | 2.57 |
453 | 463 | 1.421268 | AGAGCAAGTGTGGTTGGATGA | 59.579 | 47.619 | 0.00 | 0.00 | 35.00 | 2.92 |
454 | 464 | 1.538512 | CAGAGCAAGTGTGGTTGGATG | 59.461 | 52.381 | 0.00 | 0.00 | 35.00 | 3.51 |
455 | 465 | 1.421268 | TCAGAGCAAGTGTGGTTGGAT | 59.579 | 47.619 | 0.00 | 0.00 | 35.00 | 3.41 |
456 | 466 | 0.836606 | TCAGAGCAAGTGTGGTTGGA | 59.163 | 50.000 | 0.00 | 0.00 | 35.00 | 3.53 |
457 | 467 | 1.901591 | ATCAGAGCAAGTGTGGTTGG | 58.098 | 50.000 | 0.00 | 0.00 | 35.00 | 3.77 |
458 | 468 | 4.572389 | GGTATATCAGAGCAAGTGTGGTTG | 59.428 | 45.833 | 0.00 | 0.00 | 35.00 | 3.77 |
459 | 469 | 4.225042 | TGGTATATCAGAGCAAGTGTGGTT | 59.775 | 41.667 | 0.00 | 0.00 | 35.00 | 3.67 |
460 | 470 | 3.774766 | TGGTATATCAGAGCAAGTGTGGT | 59.225 | 43.478 | 0.00 | 0.00 | 38.47 | 4.16 |
461 | 471 | 4.122776 | GTGGTATATCAGAGCAAGTGTGG | 58.877 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
462 | 472 | 4.122776 | GGTGGTATATCAGAGCAAGTGTG | 58.877 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
463 | 473 | 3.134804 | GGGTGGTATATCAGAGCAAGTGT | 59.865 | 47.826 | 0.00 | 0.00 | 0.00 | 3.55 |
464 | 474 | 3.733337 | GGGTGGTATATCAGAGCAAGTG | 58.267 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
465 | 475 | 2.365617 | CGGGTGGTATATCAGAGCAAGT | 59.634 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
466 | 476 | 2.868044 | GCGGGTGGTATATCAGAGCAAG | 60.868 | 54.545 | 0.00 | 0.00 | 0.00 | 4.01 |
467 | 477 | 1.070134 | GCGGGTGGTATATCAGAGCAA | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
468 | 478 | 0.679505 | GCGGGTGGTATATCAGAGCA | 59.320 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
485 | 495 | 2.559998 | AAACAAAACTGTGTGGAGCG | 57.440 | 45.000 | 0.00 | 0.00 | 0.00 | 5.03 |
487 | 497 | 6.389906 | AGAAGAAAAACAAAACTGTGTGGAG | 58.610 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
488 | 498 | 6.208599 | AGAGAAGAAAAACAAAACTGTGTGGA | 59.791 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
489 | 499 | 6.389906 | AGAGAAGAAAAACAAAACTGTGTGG | 58.610 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
490 | 500 | 9.573133 | AATAGAGAAGAAAAACAAAACTGTGTG | 57.427 | 29.630 | 0.00 | 0.00 | 0.00 | 3.82 |
491 | 501 | 9.788960 | GAATAGAGAAGAAAAACAAAACTGTGT | 57.211 | 29.630 | 0.00 | 0.00 | 0.00 | 3.72 |
498 | 508 | 9.396022 | ACAGACAGAATAGAGAAGAAAAACAAA | 57.604 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
499 | 509 | 8.964476 | ACAGACAGAATAGAGAAGAAAAACAA | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
500 | 510 | 8.964476 | AACAGACAGAATAGAGAAGAAAAACA | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
545 | 556 | 8.709308 | AGGGGATCGATTATTATATCTTGGAAG | 58.291 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
546 | 557 | 8.624019 | AGGGGATCGATTATTATATCTTGGAA | 57.376 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
548 | 559 | 8.256356 | AGAGGGGATCGATTATTATATCTTGG | 57.744 | 38.462 | 0.00 | 0.00 | 0.00 | 3.61 |
556 | 567 | 7.234782 | TGCTCTTTTAGAGGGGATCGATTATTA | 59.765 | 37.037 | 0.00 | 0.00 | 42.54 | 0.98 |
558 | 569 | 5.544176 | TGCTCTTTTAGAGGGGATCGATTAT | 59.456 | 40.000 | 0.00 | 0.00 | 42.54 | 1.28 |
559 | 570 | 4.899457 | TGCTCTTTTAGAGGGGATCGATTA | 59.101 | 41.667 | 0.00 | 0.00 | 42.54 | 1.75 |
560 | 571 | 3.711704 | TGCTCTTTTAGAGGGGATCGATT | 59.288 | 43.478 | 0.00 | 0.00 | 42.54 | 3.34 |
566 | 577 | 6.770286 | ATTATCATGCTCTTTTAGAGGGGA | 57.230 | 37.500 | 5.90 | 0.00 | 42.54 | 4.81 |
589 | 600 | 9.958180 | TTCATCCTGAATCACTGTAAGAATTAA | 57.042 | 29.630 | 0.00 | 0.00 | 31.72 | 1.40 |
590 | 601 | 9.383519 | GTTCATCCTGAATCACTGTAAGAATTA | 57.616 | 33.333 | 0.00 | 0.00 | 38.79 | 1.40 |
591 | 602 | 8.105829 | AGTTCATCCTGAATCACTGTAAGAATT | 58.894 | 33.333 | 0.00 | 0.00 | 38.79 | 2.17 |
592 | 603 | 7.551974 | CAGTTCATCCTGAATCACTGTAAGAAT | 59.448 | 37.037 | 0.00 | 0.00 | 38.79 | 2.40 |
595 | 606 | 6.169094 | ACAGTTCATCCTGAATCACTGTAAG | 58.831 | 40.000 | 10.01 | 0.00 | 41.50 | 2.34 |
596 | 607 | 6.114187 | ACAGTTCATCCTGAATCACTGTAA | 57.886 | 37.500 | 10.01 | 0.00 | 41.50 | 2.41 |
597 | 608 | 5.745312 | ACAGTTCATCCTGAATCACTGTA | 57.255 | 39.130 | 10.01 | 0.00 | 41.50 | 2.74 |
598 | 609 | 4.630644 | ACAGTTCATCCTGAATCACTGT | 57.369 | 40.909 | 7.09 | 7.09 | 39.67 | 3.55 |
599 | 610 | 4.394300 | GGAACAGTTCATCCTGAATCACTG | 59.606 | 45.833 | 15.36 | 6.10 | 38.79 | 3.66 |
600 | 611 | 4.583871 | GGAACAGTTCATCCTGAATCACT | 58.416 | 43.478 | 15.36 | 0.00 | 38.79 | 3.41 |
601 | 612 | 3.372206 | CGGAACAGTTCATCCTGAATCAC | 59.628 | 47.826 | 15.36 | 0.00 | 38.79 | 3.06 |
602 | 613 | 3.599343 | CGGAACAGTTCATCCTGAATCA | 58.401 | 45.455 | 15.36 | 0.00 | 38.79 | 2.57 |
603 | 614 | 2.939103 | CCGGAACAGTTCATCCTGAATC | 59.061 | 50.000 | 15.36 | 0.00 | 38.79 | 2.52 |
604 | 615 | 2.356125 | CCCGGAACAGTTCATCCTGAAT | 60.356 | 50.000 | 15.36 | 0.00 | 38.79 | 2.57 |
605 | 616 | 1.003118 | CCCGGAACAGTTCATCCTGAA | 59.997 | 52.381 | 15.36 | 0.00 | 36.30 | 3.02 |
606 | 617 | 0.613260 | CCCGGAACAGTTCATCCTGA | 59.387 | 55.000 | 15.36 | 0.00 | 36.30 | 3.86 |
607 | 618 | 0.392998 | CCCCGGAACAGTTCATCCTG | 60.393 | 60.000 | 15.36 | 0.00 | 38.45 | 3.86 |
610 | 621 | 4.124970 | GTTATACCCCGGAACAGTTCATC | 58.875 | 47.826 | 15.36 | 0.00 | 0.00 | 2.92 |
612 | 623 | 2.905085 | TGTTATACCCCGGAACAGTTCA | 59.095 | 45.455 | 15.36 | 0.00 | 0.00 | 3.18 |
613 | 624 | 3.615224 | TGTTATACCCCGGAACAGTTC | 57.385 | 47.619 | 0.73 | 4.52 | 0.00 | 3.01 |
637 | 813 | 4.069304 | TCCTGGTACCTCAAACAATTTCG | 58.931 | 43.478 | 14.36 | 0.00 | 0.00 | 3.46 |
641 | 817 | 4.447138 | TGTTCCTGGTACCTCAAACAAT | 57.553 | 40.909 | 14.36 | 0.00 | 0.00 | 2.71 |
642 | 818 | 3.935818 | TGTTCCTGGTACCTCAAACAA | 57.064 | 42.857 | 14.36 | 3.45 | 0.00 | 2.83 |
649 | 855 | 2.781174 | TGGACTTTTGTTCCTGGTACCT | 59.219 | 45.455 | 14.36 | 0.00 | 0.00 | 3.08 |
651 | 857 | 3.816994 | ACTGGACTTTTGTTCCTGGTAC | 58.183 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
665 | 871 | 6.015856 | CGATGGATATGTTTCTCTACTGGACT | 60.016 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
760 | 1010 | 3.737850 | GAGGACATCCATCATCACTTCC | 58.262 | 50.000 | 0.00 | 0.00 | 38.89 | 3.46 |
788 | 1038 | 1.402720 | GGTTTGACCACCGCATGATTG | 60.403 | 52.381 | 0.00 | 0.00 | 38.42 | 2.67 |
789 | 1039 | 0.887933 | GGTTTGACCACCGCATGATT | 59.112 | 50.000 | 0.00 | 0.00 | 38.42 | 2.57 |
799 | 1049 | 1.956043 | GCAATCTGCGGTTTGACCA | 59.044 | 52.632 | 18.52 | 0.00 | 38.47 | 4.02 |
865 | 1115 | 0.818296 | AGACACGTACTCATGGGCTC | 59.182 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
866 | 1116 | 0.818296 | GAGACACGTACTCATGGGCT | 59.182 | 55.000 | 14.35 | 0.00 | 34.87 | 5.19 |
867 | 1117 | 0.525668 | CGAGACACGTACTCATGGGC | 60.526 | 60.000 | 17.73 | 0.00 | 37.22 | 5.36 |
868 | 1118 | 0.100682 | CCGAGACACGTACTCATGGG | 59.899 | 60.000 | 17.73 | 0.00 | 40.78 | 4.00 |
869 | 1119 | 0.809385 | ACCGAGACACGTACTCATGG | 59.191 | 55.000 | 17.73 | 14.39 | 40.78 | 3.66 |
870 | 1120 | 1.199327 | ACACCGAGACACGTACTCATG | 59.801 | 52.381 | 17.73 | 16.39 | 40.78 | 3.07 |
912 | 1162 | 4.980805 | TGGTTCGAGGCGGTGCAC | 62.981 | 66.667 | 8.80 | 8.80 | 0.00 | 4.57 |
992 | 1242 | 3.955101 | CCTAGGAGCTCGACCGCG | 61.955 | 72.222 | 1.05 | 0.00 | 39.35 | 6.46 |
995 | 1245 | 0.820482 | GAGACCCTAGGAGCTCGACC | 60.820 | 65.000 | 11.48 | 0.00 | 0.00 | 4.79 |
1023 | 1277 | 3.365265 | CAAAGAGGTGGCGGTGGC | 61.365 | 66.667 | 0.00 | 0.00 | 38.90 | 5.01 |
1024 | 1278 | 2.672996 | CCAAAGAGGTGGCGGTGG | 60.673 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
1260 | 1514 | 0.173481 | CTTTGAGCGTGATCTCGGGA | 59.827 | 55.000 | 17.94 | 0.00 | 35.90 | 5.14 |
1263 | 1517 | 0.919981 | GCTCTTTGAGCGTGATCTCG | 59.080 | 55.000 | 12.66 | 12.66 | 45.85 | 4.04 |
1284 | 1538 | 1.154016 | CTTCTCGTGCGTGGACGAT | 60.154 | 57.895 | 16.71 | 0.00 | 46.72 | 3.73 |
1545 | 1799 | 4.200283 | CCGAGCTCGAGGACCAGC | 62.200 | 72.222 | 36.59 | 0.00 | 43.02 | 4.85 |
2033 | 2294 | 4.124351 | TAACTCTCACCGCCGGCG | 62.124 | 66.667 | 41.00 | 41.00 | 39.44 | 6.46 |
2073 | 2335 | 5.743872 | CCACGTCTTCCAAAAAGAAAAGAAG | 59.256 | 40.000 | 0.00 | 0.00 | 36.19 | 2.85 |
2098 | 2360 | 3.183775 | CACACTTGTTACAGCGAAGGTAC | 59.816 | 47.826 | 0.00 | 0.00 | 35.08 | 3.34 |
2176 | 2445 | 6.567050 | TGTATAGATTCCGTTTACACAGTCC | 58.433 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2291 | 2564 | 7.373778 | AGACGTTTTTGTAGGCTAATTTAGG | 57.626 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2311 | 2584 | 7.437748 | ACCTCCATCTCTCAAAATATAAGACG | 58.562 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
2324 | 2597 | 6.737346 | GCAATCAACTACTACCTCCATCTCTC | 60.737 | 46.154 | 0.00 | 0.00 | 0.00 | 3.20 |
2325 | 2598 | 5.069781 | GCAATCAACTACTACCTCCATCTCT | 59.930 | 44.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2341 | 2614 | 0.172578 | GGCCCTTAACCGCAATCAAC | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2364 | 2637 | 7.044181 | TGCACTCCTAGAATCTTGTGAATTAG | 58.956 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
2366 | 2639 | 5.809001 | TGCACTCCTAGAATCTTGTGAATT | 58.191 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2382 | 2655 | 5.705609 | TTGTTTTCCTATCTTTGCACTCC | 57.294 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
2385 | 2658 | 5.696270 | CCCTTTTGTTTTCCTATCTTTGCAC | 59.304 | 40.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2466 | 2739 | 7.704271 | GGCAACCTAAAATACTACAGGATTTC | 58.296 | 38.462 | 0.00 | 0.00 | 32.25 | 2.17 |
2493 | 2766 | 2.403252 | ATCTGTAGCCCGAACAAAGG | 57.597 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
2494 | 2767 | 2.678336 | GGAATCTGTAGCCCGAACAAAG | 59.322 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2495 | 2768 | 2.304761 | AGGAATCTGTAGCCCGAACAAA | 59.695 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
2496 | 2769 | 1.906574 | AGGAATCTGTAGCCCGAACAA | 59.093 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
2497 | 2770 | 1.207089 | CAGGAATCTGTAGCCCGAACA | 59.793 | 52.381 | 0.00 | 0.00 | 36.30 | 3.18 |
2498 | 2771 | 1.480954 | TCAGGAATCTGTAGCCCGAAC | 59.519 | 52.381 | 0.00 | 0.00 | 41.59 | 3.95 |
2499 | 2772 | 1.757118 | CTCAGGAATCTGTAGCCCGAA | 59.243 | 52.381 | 0.00 | 0.00 | 41.59 | 4.30 |
2500 | 2773 | 1.063942 | TCTCAGGAATCTGTAGCCCGA | 60.064 | 52.381 | 0.00 | 0.00 | 41.59 | 5.14 |
2501 | 2774 | 1.403814 | TCTCAGGAATCTGTAGCCCG | 58.596 | 55.000 | 0.00 | 0.00 | 41.59 | 6.13 |
2511 | 2784 | 1.202580 | CCGAAGCCGATTCTCAGGAAT | 60.203 | 52.381 | 0.00 | 0.00 | 43.99 | 3.01 |
2512 | 2785 | 0.175760 | CCGAAGCCGATTCTCAGGAA | 59.824 | 55.000 | 0.00 | 0.00 | 38.22 | 3.36 |
2513 | 2786 | 1.816537 | CCGAAGCCGATTCTCAGGA | 59.183 | 57.895 | 0.00 | 0.00 | 38.22 | 3.86 |
2514 | 2787 | 1.884926 | GCCGAAGCCGATTCTCAGG | 60.885 | 63.158 | 0.00 | 0.00 | 38.22 | 3.86 |
2515 | 2788 | 0.460987 | AAGCCGAAGCCGATTCTCAG | 60.461 | 55.000 | 0.00 | 0.00 | 41.25 | 3.35 |
2516 | 2789 | 0.740868 | CAAGCCGAAGCCGATTCTCA | 60.741 | 55.000 | 0.00 | 0.00 | 41.25 | 3.27 |
2517 | 2790 | 1.432270 | CCAAGCCGAAGCCGATTCTC | 61.432 | 60.000 | 0.00 | 0.00 | 41.25 | 2.87 |
2518 | 2791 | 1.450312 | CCAAGCCGAAGCCGATTCT | 60.450 | 57.895 | 0.00 | 0.00 | 41.25 | 2.40 |
2519 | 2792 | 0.815615 | ATCCAAGCCGAAGCCGATTC | 60.816 | 55.000 | 0.00 | 0.00 | 41.25 | 2.52 |
2520 | 2793 | 0.394352 | AATCCAAGCCGAAGCCGATT | 60.394 | 50.000 | 0.00 | 0.00 | 41.25 | 3.34 |
2521 | 2794 | 0.815615 | GAATCCAAGCCGAAGCCGAT | 60.816 | 55.000 | 0.00 | 0.00 | 41.25 | 4.18 |
2522 | 2795 | 1.449601 | GAATCCAAGCCGAAGCCGA | 60.450 | 57.895 | 0.00 | 0.00 | 41.25 | 5.54 |
2523 | 2796 | 2.472909 | GGAATCCAAGCCGAAGCCG | 61.473 | 63.158 | 0.00 | 0.00 | 41.25 | 5.52 |
2524 | 2797 | 0.180406 | TAGGAATCCAAGCCGAAGCC | 59.820 | 55.000 | 0.61 | 0.00 | 41.25 | 4.35 |
2525 | 2798 | 2.038387 | TTAGGAATCCAAGCCGAAGC | 57.962 | 50.000 | 0.61 | 0.00 | 40.32 | 3.86 |
2526 | 2799 | 4.640201 | TGATTTTAGGAATCCAAGCCGAAG | 59.360 | 41.667 | 0.61 | 0.00 | 0.00 | 3.79 |
2527 | 2800 | 4.594970 | TGATTTTAGGAATCCAAGCCGAA | 58.405 | 39.130 | 0.61 | 0.00 | 0.00 | 4.30 |
2528 | 2801 | 4.199310 | CTGATTTTAGGAATCCAAGCCGA | 58.801 | 43.478 | 0.61 | 0.00 | 0.00 | 5.54 |
2529 | 2802 | 3.243201 | GCTGATTTTAGGAATCCAAGCCG | 60.243 | 47.826 | 0.61 | 0.00 | 0.00 | 5.52 |
2530 | 2803 | 3.956848 | AGCTGATTTTAGGAATCCAAGCC | 59.043 | 43.478 | 0.61 | 0.00 | 30.43 | 4.35 |
2531 | 2804 | 5.590259 | TGTAGCTGATTTTAGGAATCCAAGC | 59.410 | 40.000 | 0.61 | 0.00 | 0.00 | 4.01 |
2532 | 2805 | 6.825721 | ACTGTAGCTGATTTTAGGAATCCAAG | 59.174 | 38.462 | 0.61 | 0.00 | 0.00 | 3.61 |
2533 | 2806 | 6.721318 | ACTGTAGCTGATTTTAGGAATCCAA | 58.279 | 36.000 | 0.61 | 0.00 | 0.00 | 3.53 |
2534 | 2807 | 6.313519 | ACTGTAGCTGATTTTAGGAATCCA | 57.686 | 37.500 | 0.61 | 0.00 | 0.00 | 3.41 |
2535 | 2808 | 6.458888 | GCAACTGTAGCTGATTTTAGGAATCC | 60.459 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
2536 | 2809 | 6.094048 | TGCAACTGTAGCTGATTTTAGGAATC | 59.906 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
2537 | 2810 | 5.945784 | TGCAACTGTAGCTGATTTTAGGAAT | 59.054 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2538 | 2811 | 5.312895 | TGCAACTGTAGCTGATTTTAGGAA | 58.687 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
2539 | 2812 | 4.905429 | TGCAACTGTAGCTGATTTTAGGA | 58.095 | 39.130 | 0.00 | 0.00 | 0.00 | 2.94 |
2540 | 2813 | 4.937620 | TCTGCAACTGTAGCTGATTTTAGG | 59.062 | 41.667 | 0.00 | 0.00 | 35.45 | 2.69 |
2541 | 2814 | 6.674694 | ATCTGCAACTGTAGCTGATTTTAG | 57.325 | 37.500 | 0.00 | 0.00 | 44.77 | 1.85 |
2547 | 2820 | 3.259123 | TCAGAATCTGCAACTGTAGCTGA | 59.741 | 43.478 | 5.18 | 0.00 | 42.73 | 4.26 |
2548 | 2821 | 3.593096 | TCAGAATCTGCAACTGTAGCTG | 58.407 | 45.455 | 5.18 | 0.00 | 33.93 | 4.24 |
2549 | 2822 | 3.513119 | TCTCAGAATCTGCAACTGTAGCT | 59.487 | 43.478 | 5.18 | 0.00 | 33.93 | 3.32 |
2550 | 2823 | 3.854666 | TCTCAGAATCTGCAACTGTAGC | 58.145 | 45.455 | 5.18 | 0.00 | 33.93 | 3.58 |
2551 | 2824 | 6.104665 | TGATTCTCAGAATCTGCAACTGTAG | 58.895 | 40.000 | 24.80 | 0.00 | 33.93 | 2.74 |
2552 | 2825 | 6.041423 | TGATTCTCAGAATCTGCAACTGTA | 57.959 | 37.500 | 24.80 | 2.05 | 33.93 | 2.74 |
2553 | 2826 | 4.903054 | TGATTCTCAGAATCTGCAACTGT | 58.097 | 39.130 | 24.80 | 0.00 | 33.93 | 3.55 |
2566 | 2839 | 6.708054 | ACAAACAACCTACTTCTGATTCTCAG | 59.292 | 38.462 | 0.00 | 0.00 | 45.59 | 3.35 |
2567 | 2840 | 6.591935 | ACAAACAACCTACTTCTGATTCTCA | 58.408 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2568 | 2841 | 7.497925 | AACAAACAACCTACTTCTGATTCTC | 57.502 | 36.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2569 | 2842 | 7.881775 | AAACAAACAACCTACTTCTGATTCT | 57.118 | 32.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2570 | 2843 | 9.612620 | CATAAACAAACAACCTACTTCTGATTC | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2571 | 2844 | 9.349713 | TCATAAACAAACAACCTACTTCTGATT | 57.650 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2572 | 2845 | 8.918202 | TCATAAACAAACAACCTACTTCTGAT | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
2573 | 2846 | 8.740123 | TTCATAAACAAACAACCTACTTCTGA | 57.260 | 30.769 | 0.00 | 0.00 | 0.00 | 3.27 |
2574 | 2847 | 9.450807 | CTTTCATAAACAAACAACCTACTTCTG | 57.549 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
2575 | 2848 | 9.185680 | ACTTTCATAAACAAACAACCTACTTCT | 57.814 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
2576 | 2849 | 9.233232 | CACTTTCATAAACAAACAACCTACTTC | 57.767 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
2577 | 2850 | 7.704899 | GCACTTTCATAAACAAACAACCTACTT | 59.295 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2578 | 2851 | 7.200455 | GCACTTTCATAAACAAACAACCTACT | 58.800 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2579 | 2852 | 6.141685 | CGCACTTTCATAAACAAACAACCTAC | 59.858 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2580 | 2853 | 6.183360 | ACGCACTTTCATAAACAAACAACCTA | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 3.08 |
2581 | 2854 | 5.040635 | CGCACTTTCATAAACAAACAACCT | 58.959 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
2582 | 2855 | 4.801516 | ACGCACTTTCATAAACAAACAACC | 59.198 | 37.500 | 0.00 | 0.00 | 0.00 | 3.77 |
2583 | 2856 | 5.942325 | ACGCACTTTCATAAACAAACAAC | 57.058 | 34.783 | 0.00 | 0.00 | 0.00 | 3.32 |
2584 | 2857 | 9.900710 | ATATAACGCACTTTCATAAACAAACAA | 57.099 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
2585 | 2858 | 9.549509 | GATATAACGCACTTTCATAAACAAACA | 57.450 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2586 | 2859 | 8.721476 | CGATATAACGCACTTTCATAAACAAAC | 58.279 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
2587 | 2860 | 8.657729 | TCGATATAACGCACTTTCATAAACAAA | 58.342 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2588 | 2861 | 8.111836 | GTCGATATAACGCACTTTCATAAACAA | 58.888 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2589 | 2862 | 7.490079 | AGTCGATATAACGCACTTTCATAAACA | 59.510 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2590 | 2863 | 7.838498 | AGTCGATATAACGCACTTTCATAAAC | 58.162 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
2591 | 2864 | 7.997107 | AGTCGATATAACGCACTTTCATAAA | 57.003 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2592 | 2865 | 9.177304 | CTTAGTCGATATAACGCACTTTCATAA | 57.823 | 33.333 | 10.84 | 2.33 | 0.00 | 1.90 |
2593 | 2866 | 7.806487 | CCTTAGTCGATATAACGCACTTTCATA | 59.194 | 37.037 | 10.84 | 0.00 | 0.00 | 2.15 |
2594 | 2867 | 6.641314 | CCTTAGTCGATATAACGCACTTTCAT | 59.359 | 38.462 | 10.84 | 0.00 | 0.00 | 2.57 |
2645 | 2921 | 4.082190 | TCACCTAGAAATTCTCAGTGACGG | 60.082 | 45.833 | 18.36 | 5.46 | 35.22 | 4.79 |
2750 | 3028 | 7.878477 | ACTATGTGCTTGTTTTCATTTCATG | 57.122 | 32.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2804 | 3082 | 8.655092 | CAATTTCTTCAGTCTCATAGTCTTCAC | 58.345 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
2837 | 3115 | 9.265901 | CTTTGACTGAAGACTTTCTCTATTTCA | 57.734 | 33.333 | 0.00 | 0.00 | 34.31 | 2.69 |
2923 | 3201 | 4.039124 | CACCAAGCCAACTGGTTCTATTTT | 59.961 | 41.667 | 0.00 | 0.00 | 37.57 | 1.82 |
3027 | 3306 | 1.299926 | GCGTCCGAGACTGTGTGTT | 60.300 | 57.895 | 0.00 | 0.00 | 0.00 | 3.32 |
3044 | 3323 | 3.462021 | GAGAATATGGTGAGGACTGTGC | 58.538 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.