Multiple sequence alignment - TraesCS5B01G477600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G477600 chr5B 100.000 2561 0 0 1 2561 649820879 649823439 0.000000e+00 4730
1 TraesCS5B01G477600 chrUn 95.054 2426 67 11 1 2392 219114347 219111941 0.000000e+00 3766
2 TraesCS5B01G477600 chrUn 95.054 2426 67 11 1 2392 272277980 272280386 0.000000e+00 3766
3 TraesCS5B01G477600 chrUn 95.175 1575 44 4 1 1546 384786394 384784823 0.000000e+00 2459
4 TraesCS5B01G477600 chrUn 94.062 842 29 9 1553 2392 300711768 300710946 0.000000e+00 1258
5 TraesCS5B01G477600 chrUn 90.076 393 13 5 1 368 312420901 312421292 1.070000e-133 486
6 TraesCS5B01G477600 chrUn 90.076 393 13 5 1 368 312424732 312425123 1.070000e-133 486
7 TraesCS5B01G477600 chrUn 90.076 393 13 5 1 368 325426289 325426680 1.070000e-133 486
8 TraesCS5B01G477600 chrUn 95.392 217 10 0 2176 2392 471295562 471295778 1.890000e-91 346
9 TraesCS5B01G477600 chrUn 96.250 80 2 1 1122 1200 471295481 471295560 2.070000e-26 130
10 TraesCS5B01G477600 chr3D 95.238 1113 24 9 1 1088 549466330 549465222 0.000000e+00 1735
11 TraesCS5B01G477600 chr3D 96.098 1025 22 5 1384 2393 549465225 549464204 0.000000e+00 1655
12 TraesCS5B01G477600 chr3A 86.187 514 62 3 107 613 735219134 735219645 4.820000e-152 547
13 TraesCS5B01G477600 chr1A 80.357 392 43 20 253 613 514668714 514669102 1.510000e-67 267
14 TraesCS5B01G477600 chr5D 92.857 140 9 1 2423 2561 517357356 517357495 4.320000e-48 202
15 TraesCS5B01G477600 chr5A 98.958 96 1 0 2466 2561 644438685 644438780 3.390000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G477600 chr5B 649820879 649823439 2560 False 4730 4730 100.000 1 2561 1 chr5B.!!$F1 2560
1 TraesCS5B01G477600 chrUn 219111941 219114347 2406 True 3766 3766 95.054 1 2392 1 chrUn.!!$R1 2391
2 TraesCS5B01G477600 chrUn 272277980 272280386 2406 False 3766 3766 95.054 1 2392 1 chrUn.!!$F1 2391
3 TraesCS5B01G477600 chrUn 384784823 384786394 1571 True 2459 2459 95.175 1 1546 1 chrUn.!!$R3 1545
4 TraesCS5B01G477600 chrUn 300710946 300711768 822 True 1258 1258 94.062 1553 2392 1 chrUn.!!$R2 839
5 TraesCS5B01G477600 chrUn 312420901 312425123 4222 False 486 486 90.076 1 368 2 chrUn.!!$F3 367
6 TraesCS5B01G477600 chr3D 549464204 549466330 2126 True 1695 1735 95.668 1 2393 2 chr3D.!!$R1 2392
7 TraesCS5B01G477600 chr3A 735219134 735219645 511 False 547 547 86.187 107 613 1 chr3A.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 1.153289 ATGACAGGGATGTGAGCGC 60.153 57.895 0.00 0.0 0.0 5.92 F
162 188 1.171308 TTAGCTGCTACTCGGTCGTT 58.829 50.000 9.27 0.0 0.0 3.85 F
1262 1920 0.105039 CCAGATCGTAAGTGGAGGGC 59.895 60.000 0.00 0.0 33.1 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1040 1597 0.662085 GAGCTCTATTGCTGCCTTGC 59.338 55.0 6.43 0.0 44.17 4.01 R
1424 2082 0.971386 GTCACCCCGAGGACAAACTA 59.029 55.0 0.00 0.0 36.73 2.24 R
2436 4962 0.165727 CGCGCATGAGTACAAGCAAA 59.834 50.0 8.75 0.0 40.18 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.153289 ATGACAGGGATGTGAGCGC 60.153 57.895 0.00 0.00 0.00 5.92
162 188 1.171308 TTAGCTGCTACTCGGTCGTT 58.829 50.000 9.27 0.00 0.00 3.85
319 352 3.255888 GCGGAAGAACTTCAGGGAATTTT 59.744 43.478 15.02 0.00 41.20 1.82
765 1093 5.047566 TGCTGGTAATGTAATATGCCTGT 57.952 39.130 0.00 0.00 0.00 4.00
834 1316 5.678583 ACTGACAATTATCTGTGCTGCTAT 58.321 37.500 0.00 0.00 30.39 2.97
866 1348 2.852449 TCCTGGGCTTCACCAAGATAAT 59.148 45.455 0.00 0.00 43.15 1.28
976 1533 4.819630 TGCTTAACTCTGTCAAATTTCGGT 59.180 37.500 0.00 0.00 0.00 4.69
1040 1597 2.029110 GGGACCCAAACACAACATCATG 60.029 50.000 5.33 0.00 0.00 3.07
1097 1658 0.321122 AAGCTGATGCCTATAGCCGC 60.321 55.000 0.00 0.00 42.71 6.53
1262 1920 0.105039 CCAGATCGTAAGTGGAGGGC 59.895 60.000 0.00 0.00 33.10 5.19
1263 1921 0.249073 CAGATCGTAAGTGGAGGGCG 60.249 60.000 0.00 0.00 39.48 6.13
1281 1939 4.821935 GGTCCTCCCACAAACAGG 57.178 61.111 0.00 0.00 0.00 4.00
1289 1947 4.138487 CTCCCACAAACAGGAGGTATAC 57.862 50.000 0.00 0.00 45.08 1.47
1371 2029 3.282557 CACAACTGAGTGCGGTACA 57.717 52.632 0.00 0.00 32.01 2.90
1411 2069 1.403679 GCAGTATATGCGGGCAAACAA 59.596 47.619 0.00 0.00 46.99 2.83
1424 2082 4.876107 CGGGCAAACAAGACATAGAAGTAT 59.124 41.667 0.00 0.00 0.00 2.12
1427 2085 7.048512 GGGCAAACAAGACATAGAAGTATAGT 58.951 38.462 0.00 0.00 0.00 2.12
1551 2209 3.380142 CACCTTCGGTTTGGATGTTTTG 58.620 45.455 0.00 0.00 31.02 2.44
1684 2342 2.034558 GTGCTGCTGTATTTGGTTGTGT 59.965 45.455 0.00 0.00 0.00 3.72
1707 2365 7.496591 GTGTTGTATCTATGGAACCCGATTAAA 59.503 37.037 0.00 0.00 0.00 1.52
1941 2601 4.003788 CGAAGGGTGACGGGTGCT 62.004 66.667 0.00 0.00 0.00 4.40
2141 4319 2.884639 AGCTGGCTAACAAAACGAATGT 59.115 40.909 0.00 0.00 0.00 2.71
2393 4919 1.428370 CCGCTCCGATGCATTTTCGA 61.428 55.000 9.69 0.00 38.88 3.71
2394 4920 0.373370 CGCTCCGATGCATTTTCGAA 59.627 50.000 9.69 0.00 38.88 3.71
2395 4921 1.593070 CGCTCCGATGCATTTTCGAAG 60.593 52.381 9.69 0.00 38.88 3.79
2396 4922 1.857602 GCTCCGATGCATTTTCGAAGC 60.858 52.381 3.65 3.65 38.88 3.86
2397 4923 0.373370 TCCGATGCATTTTCGAAGCG 59.627 50.000 9.69 1.67 38.88 4.68
2398 4924 1.196130 CCGATGCATTTTCGAAGCGC 61.196 55.000 9.69 0.00 38.88 5.92
2399 4925 0.247814 CGATGCATTTTCGAAGCGCT 60.248 50.000 2.64 2.64 38.88 5.92
2401 4927 0.179156 ATGCATTTTCGAAGCGCTGG 60.179 50.000 12.58 6.52 0.00 4.85
2403 4929 1.514873 CATTTTCGAAGCGCTGGCC 60.515 57.895 12.58 2.13 41.24 5.36
2404 4930 1.971167 ATTTTCGAAGCGCTGGCCA 60.971 52.632 12.58 4.71 41.24 5.36
2405 4931 2.200170 ATTTTCGAAGCGCTGGCCAC 62.200 55.000 12.58 0.00 41.24 5.01
2408 4934 4.451150 CGAAGCGCTGGCCACCTA 62.451 66.667 12.58 0.00 41.24 3.08
2409 4935 2.190578 GAAGCGCTGGCCACCTAT 59.809 61.111 12.58 0.00 41.24 2.57
2410 4936 1.889573 GAAGCGCTGGCCACCTATC 60.890 63.158 12.58 0.00 41.24 2.08
2411 4937 2.317149 GAAGCGCTGGCCACCTATCT 62.317 60.000 12.58 0.00 41.24 1.98
2412 4938 2.280457 GCGCTGGCCACCTATCTC 60.280 66.667 0.00 0.00 0.00 2.75
2413 4939 2.423446 CGCTGGCCACCTATCTCC 59.577 66.667 0.00 0.00 0.00 3.71
2414 4940 2.434843 CGCTGGCCACCTATCTCCA 61.435 63.158 0.00 0.00 0.00 3.86
2415 4941 1.762522 CGCTGGCCACCTATCTCCAT 61.763 60.000 0.00 0.00 0.00 3.41
2416 4942 0.475906 GCTGGCCACCTATCTCCATT 59.524 55.000 0.00 0.00 0.00 3.16
2417 4943 1.816961 GCTGGCCACCTATCTCCATTG 60.817 57.143 0.00 0.00 0.00 2.82
2418 4944 1.492176 CTGGCCACCTATCTCCATTGT 59.508 52.381 0.00 0.00 0.00 2.71
2419 4945 1.922447 TGGCCACCTATCTCCATTGTT 59.078 47.619 0.00 0.00 0.00 2.83
2420 4946 2.301346 GGCCACCTATCTCCATTGTTG 58.699 52.381 0.00 0.00 0.00 3.33
2421 4947 2.357154 GGCCACCTATCTCCATTGTTGT 60.357 50.000 0.00 0.00 0.00 3.32
2422 4948 3.356290 GCCACCTATCTCCATTGTTGTT 58.644 45.455 0.00 0.00 0.00 2.83
2423 4949 3.129287 GCCACCTATCTCCATTGTTGTTG 59.871 47.826 0.00 0.00 0.00 3.33
2424 4950 4.588899 CCACCTATCTCCATTGTTGTTGA 58.411 43.478 0.00 0.00 0.00 3.18
2425 4951 5.009631 CCACCTATCTCCATTGTTGTTGAA 58.990 41.667 0.00 0.00 0.00 2.69
2426 4952 5.106157 CCACCTATCTCCATTGTTGTTGAAC 60.106 44.000 0.00 0.00 0.00 3.18
2427 4953 5.473162 CACCTATCTCCATTGTTGTTGAACA 59.527 40.000 0.00 0.00 40.45 3.18
2454 4980 2.330231 TTTTGCTTGTACTCATGCGC 57.670 45.000 0.00 0.00 44.32 6.09
2459 4985 1.148157 CTTGTACTCATGCGCGGGAG 61.148 60.000 22.07 22.07 37.18 4.30
2461 4987 4.221422 TACTCATGCGCGGGAGGC 62.221 66.667 25.70 0.00 35.45 4.70
2479 5235 2.452813 CGTGCAGCGGGTACATGTC 61.453 63.158 0.00 0.00 36.85 3.06
2487 5243 2.718073 GGGTACATGTCGCCGGAGT 61.718 63.158 5.05 0.00 0.00 3.85
2490 5246 0.590732 GTACATGTCGCCGGAGTACG 60.591 60.000 5.05 0.00 43.80 3.67
2494 5250 3.204827 GTCGCCGGAGTACGCCTA 61.205 66.667 14.12 0.00 42.52 3.93
2495 5251 3.204827 TCGCCGGAGTACGCCTAC 61.205 66.667 14.12 4.51 42.52 3.18
2496 5252 3.207669 CGCCGGAGTACGCCTACT 61.208 66.667 14.12 0.00 42.52 2.57
2508 5264 3.760035 CCTACTGCGGCCACGTCT 61.760 66.667 2.24 0.00 43.45 4.18
2510 5266 3.701604 CTACTGCGGCCACGTCTCC 62.702 68.421 2.24 0.00 43.45 3.71
2515 5271 4.351938 CGGCCACGTCTCCGTCAA 62.352 66.667 14.85 0.00 46.28 3.18
2516 5272 2.432628 GGCCACGTCTCCGTCAAG 60.433 66.667 0.00 0.00 46.28 3.02
2517 5273 2.338984 GCCACGTCTCCGTCAAGT 59.661 61.111 0.00 0.00 46.28 3.16
2518 5274 1.733399 GCCACGTCTCCGTCAAGTC 60.733 63.158 0.00 0.00 46.28 3.01
2520 5276 1.442184 CACGTCTCCGTCAAGTCGG 60.442 63.158 0.00 0.00 46.28 4.79
2529 5285 2.341318 CGTCAAGTCGGACATGTACA 57.659 50.000 9.21 0.00 37.66 2.90
2530 5286 2.251040 CGTCAAGTCGGACATGTACAG 58.749 52.381 9.21 1.07 37.66 2.74
2531 5287 1.993370 GTCAAGTCGGACATGTACAGC 59.007 52.381 9.21 0.00 37.73 4.40
2532 5288 1.893137 TCAAGTCGGACATGTACAGCT 59.107 47.619 9.21 2.04 0.00 4.24
2534 5290 2.656560 AGTCGGACATGTACAGCTTC 57.343 50.000 9.21 0.00 0.00 3.86
2535 5291 1.135373 AGTCGGACATGTACAGCTTCG 60.135 52.381 9.21 3.56 0.00 3.79
2536 5292 0.172578 TCGGACATGTACAGCTTCGG 59.827 55.000 9.21 2.42 0.00 4.30
2537 5293 1.421410 CGGACATGTACAGCTTCGGC 61.421 60.000 9.21 0.00 42.17 5.54
2547 5303 4.210304 GCTTCGGCGTCATCGTGC 62.210 66.667 6.85 0.00 39.49 5.34
2548 5304 2.507102 CTTCGGCGTCATCGTGCT 60.507 61.111 6.85 0.00 39.49 4.40
2549 5305 2.792290 CTTCGGCGTCATCGTGCTG 61.792 63.158 6.85 0.00 39.49 4.41
2550 5306 4.794439 TCGGCGTCATCGTGCTGG 62.794 66.667 6.85 0.00 38.05 4.85
2551 5307 4.794439 CGGCGTCATCGTGCTGGA 62.794 66.667 0.00 0.00 39.49 3.86
2552 5308 2.887568 GGCGTCATCGTGCTGGAG 60.888 66.667 0.00 0.00 39.49 3.86
2553 5309 2.887568 GCGTCATCGTGCTGGAGG 60.888 66.667 0.00 0.00 39.49 4.30
2554 5310 2.573869 CGTCATCGTGCTGGAGGT 59.426 61.111 0.00 0.00 0.00 3.85
2555 5311 1.517257 CGTCATCGTGCTGGAGGTC 60.517 63.158 0.00 0.00 0.00 3.85
2556 5312 1.517257 GTCATCGTGCTGGAGGTCG 60.517 63.158 0.00 0.00 0.00 4.79
2557 5313 1.977009 TCATCGTGCTGGAGGTCGT 60.977 57.895 0.00 0.00 0.00 4.34
2558 5314 1.517257 CATCGTGCTGGAGGTCGTC 60.517 63.158 0.00 0.00 0.00 4.20
2560 5316 2.214181 ATCGTGCTGGAGGTCGTCAC 62.214 60.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.990563 GTACCATTGTCGTTCAGGTCG 59.009 52.381 0.00 0.00 33.91 4.79
162 188 8.643324 ACTAAAAGGCCAACACACAATAATTAA 58.357 29.630 5.01 0.00 0.00 1.40
349 382 5.048504 AGTCGAACGAACTACCAACTATCAA 60.049 40.000 0.00 0.00 0.00 2.57
637 965 4.141981 ACAACTTTGCACCATTTGTCATGA 60.142 37.500 0.00 0.00 0.00 3.07
834 1316 0.909610 AGCCCAGGAAATCGAGGTCA 60.910 55.000 0.00 0.00 0.00 4.02
933 1490 3.254166 GCAAAATCTTGTCCTTCTGCAGA 59.746 43.478 13.74 13.74 34.79 4.26
946 1503 9.822185 AAATTTGACAGAGTTAAGCAAAATCTT 57.178 25.926 0.00 0.00 39.43 2.40
976 1533 6.528014 AACGTGTGTGTACAAATTCGAATA 57.472 33.333 11.83 0.00 38.82 1.75
1040 1597 0.662085 GAGCTCTATTGCTGCCTTGC 59.338 55.000 6.43 0.00 44.17 4.01
1093 1650 1.168407 ATACCATCATGCACAGCGGC 61.168 55.000 0.00 0.00 0.00 6.53
1156 1814 1.268352 TGCATGCCCGTTACTTGTTTC 59.732 47.619 16.68 0.00 0.00 2.78
1289 1947 3.688185 CCAGAAATCATCATATGGAGGCG 59.312 47.826 2.13 0.00 0.00 5.52
1402 2060 7.048512 ACTATACTTCTATGTCTTGTTTGCCC 58.951 38.462 0.00 0.00 0.00 5.36
1411 2069 7.013464 CCGAGGACAAACTATACTTCTATGTCT 59.987 40.741 0.00 0.00 36.74 3.41
1424 2082 0.971386 GTCACCCCGAGGACAAACTA 59.029 55.000 0.00 0.00 36.73 2.24
1427 2085 1.460689 AGGTCACCCCGAGGACAAA 60.461 57.895 0.00 0.00 38.74 2.83
1551 2209 6.986231 AGGAAAATTTTCAAGTTCATCCACAC 59.014 34.615 27.53 8.97 38.92 3.82
1684 2342 7.221450 CCTTTAATCGGGTTCCATAGATACAA 58.779 38.462 0.00 0.00 0.00 2.41
1707 2365 2.047830 AGACTCACCGAAAACTTCCCT 58.952 47.619 0.00 0.00 0.00 4.20
1718 2376 4.685169 ATTTAAATGTGCAGACTCACCG 57.315 40.909 0.00 0.00 36.17 4.94
1719 2377 5.772521 ACAATTTAAATGTGCAGACTCACC 58.227 37.500 0.39 0.00 36.17 4.02
1877 2537 6.772233 TGATTGAAAGTTTGGAACAGAGATGA 59.228 34.615 0.00 0.00 42.39 2.92
1941 2601 7.042725 CGTCAGTACATGAGTTTCTGAAGAAAA 60.043 37.037 7.05 0.00 38.65 2.29
2393 4919 2.190578 GATAGGTGGCCAGCGCTT 59.809 61.111 28.24 17.16 34.44 4.68
2394 4920 2.765807 AGATAGGTGGCCAGCGCT 60.766 61.111 28.24 22.58 34.44 5.92
2395 4921 2.280457 GAGATAGGTGGCCAGCGC 60.280 66.667 28.24 20.82 0.00 5.92
2396 4922 1.762522 ATGGAGATAGGTGGCCAGCG 61.763 60.000 28.24 0.00 33.26 5.18
2397 4923 0.475906 AATGGAGATAGGTGGCCAGC 59.524 55.000 27.66 27.66 33.26 4.85
2398 4924 1.492176 ACAATGGAGATAGGTGGCCAG 59.508 52.381 5.11 0.00 33.26 4.85
2399 4925 1.595311 ACAATGGAGATAGGTGGCCA 58.405 50.000 0.00 0.00 34.45 5.36
2401 4927 3.004752 ACAACAATGGAGATAGGTGGC 57.995 47.619 0.00 0.00 0.00 5.01
2403 4929 5.473162 TGTTCAACAACAATGGAGATAGGTG 59.527 40.000 0.00 0.00 39.69 4.00
2404 4930 5.630121 TGTTCAACAACAATGGAGATAGGT 58.370 37.500 0.00 0.00 39.69 3.08
2405 4931 6.573664 TTGTTCAACAACAATGGAGATAGG 57.426 37.500 0.00 0.00 45.73 2.57
2434 4960 2.660490 GCGCATGAGTACAAGCAAAAA 58.340 42.857 0.30 0.00 40.18 1.94
2435 4961 1.399599 CGCGCATGAGTACAAGCAAAA 60.400 47.619 8.75 0.00 40.18 2.44
2436 4962 0.165727 CGCGCATGAGTACAAGCAAA 59.834 50.000 8.75 0.00 40.18 3.68
2437 4963 1.634757 CCGCGCATGAGTACAAGCAA 61.635 55.000 8.75 0.00 40.18 3.91
2440 4966 1.148157 CTCCCGCGCATGAGTACAAG 61.148 60.000 8.75 0.00 0.00 3.16
2444 4970 4.221422 GCCTCCCGCGCATGAGTA 62.221 66.667 18.55 0.00 0.00 2.59
2461 4987 2.434185 ACATGTACCCGCTGCACG 60.434 61.111 0.00 2.27 43.15 5.34
2463 4989 2.125713 CGACATGTACCCGCTGCA 60.126 61.111 0.00 0.00 0.00 4.41
2471 5227 0.590732 CGTACTCCGGCGACATGTAC 60.591 60.000 9.30 13.88 0.00 2.90
2481 5237 2.412112 GCAGTAGGCGTACTCCGG 59.588 66.667 15.95 7.02 37.40 5.14
2510 5266 2.251040 CTGTACATGTCCGACTTGACG 58.749 52.381 18.58 7.45 38.11 4.35
2511 5267 1.993370 GCTGTACATGTCCGACTTGAC 59.007 52.381 18.58 12.88 35.77 3.18
2512 5268 1.893137 AGCTGTACATGTCCGACTTGA 59.107 47.619 18.58 2.93 0.00 3.02
2513 5269 2.370281 AGCTGTACATGTCCGACTTG 57.630 50.000 0.00 11.81 0.00 3.16
2515 5271 1.135373 CGAAGCTGTACATGTCCGACT 60.135 52.381 0.00 0.00 0.00 4.18
2516 5272 1.269166 CGAAGCTGTACATGTCCGAC 58.731 55.000 0.00 0.00 0.00 4.79
2517 5273 0.172578 CCGAAGCTGTACATGTCCGA 59.827 55.000 0.00 0.00 0.00 4.55
2518 5274 1.421410 GCCGAAGCTGTACATGTCCG 61.421 60.000 0.00 0.00 35.50 4.79
2520 5276 0.736325 ACGCCGAAGCTGTACATGTC 60.736 55.000 0.00 0.00 36.60 3.06
2521 5277 0.736325 GACGCCGAAGCTGTACATGT 60.736 55.000 2.69 2.69 36.60 3.21
2522 5278 0.735978 TGACGCCGAAGCTGTACATG 60.736 55.000 0.00 0.00 36.60 3.21
2523 5279 0.175760 ATGACGCCGAAGCTGTACAT 59.824 50.000 0.00 0.00 36.60 2.29
2524 5280 0.457853 GATGACGCCGAAGCTGTACA 60.458 55.000 0.00 0.00 36.60 2.90
2526 5282 1.226575 CGATGACGCCGAAGCTGTA 60.227 57.895 0.00 0.00 36.60 2.74
2528 5284 2.507102 ACGATGACGCCGAAGCTG 60.507 61.111 0.00 0.00 43.96 4.24
2529 5285 2.507102 CACGATGACGCCGAAGCT 60.507 61.111 0.00 0.00 43.96 3.74
2530 5286 4.210304 GCACGATGACGCCGAAGC 62.210 66.667 0.00 0.00 43.96 3.86
2531 5287 2.507102 AGCACGATGACGCCGAAG 60.507 61.111 0.00 0.00 43.96 3.79
2532 5288 2.809174 CAGCACGATGACGCCGAA 60.809 61.111 0.00 0.00 43.96 4.30
2534 5290 4.794439 TCCAGCACGATGACGCCG 62.794 66.667 0.00 0.00 43.96 6.46
2535 5291 2.887568 CTCCAGCACGATGACGCC 60.888 66.667 0.00 0.00 43.96 5.68
2536 5292 2.887568 CCTCCAGCACGATGACGC 60.888 66.667 0.00 0.00 43.96 5.19
2537 5293 1.517257 GACCTCCAGCACGATGACG 60.517 63.158 0.00 0.00 45.75 4.35
2539 5295 1.934220 GACGACCTCCAGCACGATGA 61.934 60.000 0.00 0.00 0.00 2.92
2540 5296 1.517257 GACGACCTCCAGCACGATG 60.517 63.158 0.00 0.00 0.00 3.84
2543 5299 2.430921 GTGACGACCTCCAGCACG 60.431 66.667 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.