Multiple sequence alignment - TraesCS5B01G477000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G477000 chr5B 100.000 5995 0 0 1 5995 649408673 649402679 0.000000e+00 11071.0
1 TraesCS5B01G477000 chr5B 90.789 380 28 4 156 532 649415942 649415567 8.970000e-138 501.0
2 TraesCS5B01G477000 chr5B 86.503 163 17 4 2081 2239 649406431 649406270 2.220000e-39 174.0
3 TraesCS5B01G477000 chr5B 86.503 163 17 4 2243 2404 649406593 649406435 2.220000e-39 174.0
4 TraesCS5B01G477000 chr5B 94.595 111 6 0 1576 1686 649406779 649406669 7.990000e-39 172.0
5 TraesCS5B01G477000 chr5B 94.595 111 6 0 1895 2005 649407098 649406988 7.990000e-39 172.0
6 TraesCS5B01G477000 chr5B 94.118 68 2 2 1839 1904 649406659 649406592 1.060000e-17 102.0
7 TraesCS5B01G477000 chr5B 94.118 68 2 2 2015 2082 649406835 649406770 1.060000e-17 102.0
8 TraesCS5B01G477000 chr5B 84.746 59 5 3 693 751 649415175 649415121 8.390000e-04 56.5
9 TraesCS5B01G477000 chr5A 92.628 2374 143 19 3635 5995 644136936 644134582 0.000000e+00 3386.0
10 TraesCS5B01G477000 chr5A 90.206 1746 110 30 1895 3607 644138647 644136930 0.000000e+00 2220.0
11 TraesCS5B01G477000 chr5A 91.954 1566 74 21 131 1686 644140060 644138537 0.000000e+00 2146.0
12 TraesCS5B01G477000 chr5A 94.915 59 3 0 5016 5074 644135492 644135434 6.400000e-15 93.5
13 TraesCS5B01G477000 chr5D 93.444 1571 68 18 129 1685 516822882 516821333 0.000000e+00 2298.0
14 TraesCS5B01G477000 chr5D 94.170 1458 71 7 3631 5074 516819670 516818213 0.000000e+00 2209.0
15 TraesCS5B01G477000 chr5D 90.993 1632 103 18 1895 3488 516821446 516819821 0.000000e+00 2159.0
16 TraesCS5B01G477000 chr5D 93.340 931 46 10 5067 5995 516818278 516817362 0.000000e+00 1362.0
17 TraesCS5B01G477000 chr5D 84.483 174 18 7 2237 2404 516821243 516821073 4.810000e-36 163.0
18 TraesCS5B01G477000 chr1B 92.254 852 61 4 3673 4523 34727008 34727855 0.000000e+00 1203.0
19 TraesCS5B01G477000 chr1B 88.093 1033 88 26 4971 5995 34729570 34730575 0.000000e+00 1194.0
20 TraesCS5B01G477000 chr1B 92.713 494 26 4 2625 3117 34699807 34700291 0.000000e+00 704.0
21 TraesCS5B01G477000 chr1B 91.329 346 26 4 2287 2632 34699280 34699621 2.530000e-128 470.0
22 TraesCS5B01G477000 chr1B 85.484 310 31 12 3110 3407 34726571 34726878 1.620000e-80 311.0
23 TraesCS5B01G477000 chr1B 83.774 265 36 2 4762 5026 34729317 34729574 1.670000e-60 244.0
24 TraesCS5B01G477000 chr1B 84.800 125 13 2 4649 4767 34727860 34727984 2.930000e-23 121.0
25 TraesCS5B01G477000 chr6B 96.732 153 5 0 1685 1837 644660730 644660882 7.710000e-64 255.0
26 TraesCS5B01G477000 chr6B 92.121 165 10 3 1671 1835 125725956 125726117 4.670000e-56 230.0
27 TraesCS5B01G477000 chr6B 90.643 171 13 3 1682 1851 192110462 192110294 2.170000e-54 224.0
28 TraesCS5B01G477000 chr6A 96.644 149 5 0 1687 1835 26727185 26727037 1.290000e-61 248.0
29 TraesCS5B01G477000 chr4A 96.026 151 6 0 1685 1835 702567963 702568113 4.640000e-61 246.0
30 TraesCS5B01G477000 chr4D 94.904 157 7 1 1687 1843 145495683 145495838 1.670000e-60 244.0
31 TraesCS5B01G477000 chr2D 95.302 149 6 1 1687 1835 387733748 387733895 1.000000e-57 235.0
32 TraesCS5B01G477000 chrUn 90.698 172 13 3 1679 1849 263869208 263869377 6.050000e-55 226.0
33 TraesCS5B01G477000 chrUn 91.566 166 11 3 1685 1849 265286778 265286615 6.050000e-55 226.0
34 TraesCS5B01G477000 chr7A 86.190 210 24 3 3653 3862 158275506 158275302 7.820000e-54 222.0
35 TraesCS5B01G477000 chr3A 86.190 210 24 3 3653 3862 611186965 611186761 7.820000e-54 222.0
36 TraesCS5B01G477000 chr1A 85.714 210 25 4 3653 3862 481643556 481643760 3.640000e-52 217.0
37 TraesCS5B01G477000 chr1A 85.238 210 26 3 3653 3862 34349133 34349337 1.690000e-50 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G477000 chr5B 649402679 649408673 5994 True 1709.571429 11071 92.918857 1 5995 7 chr5B.!!$R1 5994
1 TraesCS5B01G477000 chr5B 649415121 649415942 821 True 278.750000 501 87.767500 156 751 2 chr5B.!!$R2 595
2 TraesCS5B01G477000 chr5A 644134582 644140060 5478 True 1961.375000 3386 92.425750 131 5995 4 chr5A.!!$R1 5864
3 TraesCS5B01G477000 chr5D 516817362 516822882 5520 True 1638.200000 2298 91.286000 129 5995 5 chr5D.!!$R1 5866
4 TraesCS5B01G477000 chr1B 34726571 34730575 4004 False 614.600000 1203 86.881000 3110 5995 5 chr1B.!!$F2 2885
5 TraesCS5B01G477000 chr1B 34699280 34700291 1011 False 587.000000 704 92.021000 2287 3117 2 chr1B.!!$F1 830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
857 1107 0.879090 GGTCAACACGATTTGGGGAC 59.121 55.000 0.00 0.00 33.71 4.46 F
1008 1261 0.690192 TTCAGCCGTCAATGGAGGAA 59.310 50.000 0.00 0.00 0.00 3.36 F
1719 1976 0.105246 AGCCCCACTATAGCTCTGCT 60.105 55.000 0.00 0.69 43.41 4.24 F
1820 2077 0.107703 TGCCGCTATATGCCATAGCC 60.108 55.000 17.28 8.46 42.89 3.93 F
1824 2081 0.179000 GCTATATGCCATAGCCCGCT 59.821 55.000 13.81 0.00 40.69 5.52 F
3532 4119 1.002134 CACTGAAGGGCCCATCGTT 60.002 57.895 27.56 9.62 0.00 3.85 F
3830 4418 1.284785 CTGGAAATTGGCCTCCCACTA 59.715 52.381 3.32 0.00 41.97 2.74 F
4388 4981 2.061773 CATGTTCGTCAGAGGTCACAC 58.938 52.381 1.49 0.00 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 1957 0.105246 AGCAGAGCTATAGTGGGGCT 60.105 55.0 0.84 3.73 36.99 5.19 R
2716 3221 0.540923 AGCTCTCAATCTCAGGCCAC 59.459 55.0 5.01 0.00 0.00 5.01 R
3617 4204 0.179018 AGGCGCAGGTGTTCTTTTCT 60.179 50.0 10.83 0.00 0.00 2.52 R
3618 4205 1.519408 TAGGCGCAGGTGTTCTTTTC 58.481 50.0 10.83 0.00 0.00 2.29 R
3619 4206 2.200373 ATAGGCGCAGGTGTTCTTTT 57.800 45.0 10.83 0.00 0.00 2.27 R
4673 5269 0.386352 CAGACACGGCAATGCTTGTG 60.386 55.0 22.46 22.46 39.41 3.33 R
4760 5362 0.583438 CGTTATGCCGAGCAATCAGG 59.417 55.0 2.68 0.00 43.62 3.86 R
5878 7881 1.159713 CGCTCTCCATGCCGCATTTA 61.160 55.0 2.16 0.00 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.063934 AGGAACGGAGGAAGTATAATTAAGG 57.936 40.000 0.00 0.00 0.00 2.69
26 27 6.842807 AGGAACGGAGGAAGTATAATTAAGGA 59.157 38.462 0.00 0.00 0.00 3.36
27 28 7.346436 AGGAACGGAGGAAGTATAATTAAGGAA 59.654 37.037 0.00 0.00 0.00 3.36
28 29 7.989170 GGAACGGAGGAAGTATAATTAAGGAAA 59.011 37.037 0.00 0.00 0.00 3.13
29 30 8.959705 AACGGAGGAAGTATAATTAAGGAAAG 57.040 34.615 0.00 0.00 0.00 2.62
30 31 8.315220 ACGGAGGAAGTATAATTAAGGAAAGA 57.685 34.615 0.00 0.00 0.00 2.52
31 32 8.765517 ACGGAGGAAGTATAATTAAGGAAAGAA 58.234 33.333 0.00 0.00 0.00 2.52
32 33 9.609346 CGGAGGAAGTATAATTAAGGAAAGAAA 57.391 33.333 0.00 0.00 0.00 2.52
45 46 3.909430 GGAAAGAAAACATTCCGAACCC 58.091 45.455 0.00 0.00 36.09 4.11
46 47 3.305813 GGAAAGAAAACATTCCGAACCCC 60.306 47.826 0.00 0.00 36.09 4.95
47 48 1.919240 AGAAAACATTCCGAACCCCC 58.081 50.000 0.00 0.00 0.00 5.40
69 70 8.493787 CCCCCTTCAACTTAAGATATACTACT 57.506 38.462 10.09 0.00 0.00 2.57
70 71 9.597681 CCCCCTTCAACTTAAGATATACTACTA 57.402 37.037 10.09 0.00 0.00 1.82
76 77 8.997323 TCAACTTAAGATATACTACTAGTCGGC 58.003 37.037 10.09 0.00 0.00 5.54
77 78 9.001542 CAACTTAAGATATACTACTAGTCGGCT 57.998 37.037 10.09 0.00 0.00 5.52
78 79 8.776376 ACTTAAGATATACTACTAGTCGGCTC 57.224 38.462 10.09 0.00 0.00 4.70
79 80 8.373981 ACTTAAGATATACTACTAGTCGGCTCA 58.626 37.037 10.09 0.00 0.00 4.26
80 81 9.217278 CTTAAGATATACTACTAGTCGGCTCAA 57.783 37.037 0.00 0.00 0.00 3.02
81 82 9.565090 TTAAGATATACTACTAGTCGGCTCAAA 57.435 33.333 0.00 0.00 0.00 2.69
82 83 8.461249 AAGATATACTACTAGTCGGCTCAAAA 57.539 34.615 0.00 0.00 0.00 2.44
83 84 8.461249 AGATATACTACTAGTCGGCTCAAAAA 57.539 34.615 0.00 0.00 0.00 1.94
84 85 8.569641 AGATATACTACTAGTCGGCTCAAAAAG 58.430 37.037 0.00 0.00 0.00 2.27
85 86 6.770746 ATACTACTAGTCGGCTCAAAAAGA 57.229 37.500 0.00 0.00 0.00 2.52
86 87 5.464030 ACTACTAGTCGGCTCAAAAAGAA 57.536 39.130 0.00 0.00 0.00 2.52
87 88 5.850614 ACTACTAGTCGGCTCAAAAAGAAA 58.149 37.500 0.00 0.00 0.00 2.52
88 89 5.695363 ACTACTAGTCGGCTCAAAAAGAAAC 59.305 40.000 0.00 0.00 0.00 2.78
89 90 4.704965 ACTAGTCGGCTCAAAAAGAAACT 58.295 39.130 0.00 0.00 0.00 2.66
90 91 5.123936 ACTAGTCGGCTCAAAAAGAAACTT 58.876 37.500 0.00 0.00 0.00 2.66
91 92 6.285990 ACTAGTCGGCTCAAAAAGAAACTTA 58.714 36.000 0.00 0.00 0.00 2.24
92 93 6.764560 ACTAGTCGGCTCAAAAAGAAACTTAA 59.235 34.615 0.00 0.00 0.00 1.85
93 94 6.061231 AGTCGGCTCAAAAAGAAACTTAAG 57.939 37.500 0.00 0.00 0.00 1.85
94 95 5.820947 AGTCGGCTCAAAAAGAAACTTAAGA 59.179 36.000 10.09 0.00 0.00 2.10
95 96 6.486993 AGTCGGCTCAAAAAGAAACTTAAGAT 59.513 34.615 10.09 0.00 0.00 2.40
96 97 7.660208 AGTCGGCTCAAAAAGAAACTTAAGATA 59.340 33.333 10.09 0.00 0.00 1.98
97 98 8.451748 GTCGGCTCAAAAAGAAACTTAAGATAT 58.548 33.333 10.09 0.00 0.00 1.63
98 99 9.661563 TCGGCTCAAAAAGAAACTTAAGATATA 57.338 29.630 10.09 0.00 0.00 0.86
99 100 9.704098 CGGCTCAAAAAGAAACTTAAGATATAC 57.296 33.333 10.09 0.00 0.00 1.47
142 143 5.867716 ACAGTAGTACTATTTTTCAGGTGCG 59.132 40.000 5.75 0.00 0.00 5.34
391 398 2.286885 TCCCACTCCCATTCCCCC 60.287 66.667 0.00 0.00 0.00 5.40
545 555 0.942884 GGCGATCCGATTTCCCGTAC 60.943 60.000 0.00 0.00 0.00 3.67
598 626 7.546778 TTTTCAACTGGGTTTTTATTGCTTC 57.453 32.000 0.00 0.00 0.00 3.86
636 664 2.754658 TTCCTCCTCCTCGACGCC 60.755 66.667 0.00 0.00 0.00 5.68
655 683 2.731348 GGCCGTGATCGAGATCGC 60.731 66.667 14.67 14.67 43.05 4.58
706 947 2.264794 GGTCGTTCATCCGGCAGT 59.735 61.111 0.00 0.00 33.17 4.40
707 948 1.375523 GGTCGTTCATCCGGCAGTT 60.376 57.895 0.00 0.00 33.17 3.16
708 949 1.359459 GGTCGTTCATCCGGCAGTTC 61.359 60.000 0.00 0.00 33.17 3.01
755 996 1.435577 TCCTTTTAGCTCGGTTTCGC 58.564 50.000 0.00 0.00 36.13 4.70
857 1107 0.879090 GGTCAACACGATTTGGGGAC 59.121 55.000 0.00 0.00 33.71 4.46
878 1130 4.916870 ACTTTTTACAGTCGAACAAAGGC 58.083 39.130 0.00 0.00 0.00 4.35
925 1177 2.370281 TTTTCTACCGAGCTCAGCTG 57.630 50.000 2.14 7.63 39.88 4.24
932 1184 1.035923 CCGAGCTCAGCTGGAGATTA 58.964 55.000 15.13 0.00 43.70 1.75
972 1224 1.005394 GTTTCTGACCTCGCCGGAA 60.005 57.895 5.05 0.00 36.31 4.30
975 1227 1.956629 TTCTGACCTCGCCGGAATCC 61.957 60.000 5.05 0.00 36.31 3.01
1008 1261 0.690192 TTCAGCCGTCAATGGAGGAA 59.310 50.000 0.00 0.00 0.00 3.36
1101 1354 2.202770 CTCCTGCTCAGCTCGCTG 60.203 66.667 12.54 12.54 44.86 5.18
1215 1468 4.619227 AGGAACACCCACGGCGTG 62.619 66.667 31.78 31.78 37.41 5.34
1389 1642 3.409026 AGAATGTCTGACCAGGTCAAC 57.591 47.619 23.11 21.24 42.26 3.18
1681 1938 9.863650 AGGAATCAATTGTCTCATTCTTATGAT 57.136 29.630 14.01 0.00 39.94 2.45
1686 1943 9.895138 TCAATTGTCTCATTCTTATGATTCTCA 57.105 29.630 5.13 0.00 39.94 3.27
1693 1950 9.499479 TCTCATTCTTATGATTCTCAAATAGCC 57.501 33.333 0.00 0.00 39.94 3.93
1694 1951 8.315391 TCATTCTTATGATTCTCAAATAGCCG 57.685 34.615 0.00 0.00 35.87 5.52
1695 1952 7.388776 TCATTCTTATGATTCTCAAATAGCCGG 59.611 37.037 0.00 0.00 35.87 6.13
1696 1953 4.997395 TCTTATGATTCTCAAATAGCCGGC 59.003 41.667 21.89 21.89 0.00 6.13
1697 1954 3.498774 ATGATTCTCAAATAGCCGGCT 57.501 42.857 34.85 34.85 0.00 5.52
1698 1955 4.623932 ATGATTCTCAAATAGCCGGCTA 57.376 40.909 36.88 36.88 0.00 3.93
1699 1956 4.623932 TGATTCTCAAATAGCCGGCTAT 57.376 40.909 37.79 37.79 40.63 2.97
1700 1957 5.738619 TGATTCTCAAATAGCCGGCTATA 57.261 39.130 41.53 28.27 38.20 1.31
1701 1958 5.724328 TGATTCTCAAATAGCCGGCTATAG 58.276 41.667 41.53 34.18 38.20 1.31
1702 1959 3.594603 TCTCAAATAGCCGGCTATAGC 57.405 47.619 41.53 16.78 38.20 2.97
1718 1975 1.633774 TAGCCCCACTATAGCTCTGC 58.366 55.000 0.00 0.00 38.06 4.26
1719 1976 0.105246 AGCCCCACTATAGCTCTGCT 60.105 55.000 0.00 0.69 43.41 4.24
1720 1977 1.148027 AGCCCCACTATAGCTCTGCTA 59.852 52.381 0.00 1.60 45.55 3.49
1741 1998 2.818350 GCTGTTTGAGCATGTTGCC 58.182 52.632 0.00 0.00 46.52 4.52
1742 1999 1.005294 GCTGTTTGAGCATGTTGCCG 61.005 55.000 0.00 0.00 46.52 5.69
1743 2000 1.005294 CTGTTTGAGCATGTTGCCGC 61.005 55.000 0.00 0.00 46.52 6.53
1744 2001 1.286880 GTTTGAGCATGTTGCCGCT 59.713 52.632 0.00 0.00 46.52 5.52
1745 2002 0.521291 GTTTGAGCATGTTGCCGCTA 59.479 50.000 0.00 0.00 46.52 4.26
1746 2003 1.068610 GTTTGAGCATGTTGCCGCTAA 60.069 47.619 0.00 0.00 46.52 3.09
1747 2004 1.242989 TTGAGCATGTTGCCGCTAAA 58.757 45.000 0.00 0.00 46.52 1.85
1748 2005 1.462616 TGAGCATGTTGCCGCTAAAT 58.537 45.000 0.00 0.00 46.52 1.40
1749 2006 1.132834 TGAGCATGTTGCCGCTAAATG 59.867 47.619 0.97 0.97 46.52 2.32
1750 2007 1.401552 GAGCATGTTGCCGCTAAATGA 59.598 47.619 8.94 0.00 46.52 2.57
1751 2008 2.026641 AGCATGTTGCCGCTAAATGAT 58.973 42.857 8.94 0.00 46.52 2.45
1752 2009 2.428171 AGCATGTTGCCGCTAAATGATT 59.572 40.909 8.94 0.00 46.52 2.57
1753 2010 3.119029 AGCATGTTGCCGCTAAATGATTT 60.119 39.130 8.94 0.00 46.52 2.17
1754 2011 3.243643 GCATGTTGCCGCTAAATGATTTC 59.756 43.478 8.94 0.00 37.42 2.17
1755 2012 4.422840 CATGTTGCCGCTAAATGATTTCA 58.577 39.130 0.00 0.00 0.00 2.69
1756 2013 4.717233 TGTTGCCGCTAAATGATTTCAT 57.283 36.364 0.00 0.00 38.41 2.57
1757 2014 4.422840 TGTTGCCGCTAAATGATTTCATG 58.577 39.130 0.00 0.00 36.56 3.07
1758 2015 4.082300 TGTTGCCGCTAAATGATTTCATGT 60.082 37.500 0.00 0.00 36.56 3.21
1759 2016 5.124617 TGTTGCCGCTAAATGATTTCATGTA 59.875 36.000 0.00 0.00 36.56 2.29
1760 2017 5.168526 TGCCGCTAAATGATTTCATGTAC 57.831 39.130 0.00 0.00 36.56 2.90
1761 2018 4.637977 TGCCGCTAAATGATTTCATGTACA 59.362 37.500 0.00 0.00 36.56 2.90
1762 2019 5.124617 TGCCGCTAAATGATTTCATGTACAA 59.875 36.000 0.00 0.00 36.56 2.41
1763 2020 6.183360 TGCCGCTAAATGATTTCATGTACAAT 60.183 34.615 0.00 0.00 36.56 2.71
1764 2021 6.697019 GCCGCTAAATGATTTCATGTACAATT 59.303 34.615 0.00 0.00 36.56 2.32
1765 2022 7.222611 GCCGCTAAATGATTTCATGTACAATTT 59.777 33.333 0.00 2.18 36.56 1.82
1766 2023 8.533965 CCGCTAAATGATTTCATGTACAATTTG 58.466 33.333 0.00 0.00 36.56 2.32
1767 2024 8.051909 CGCTAAATGATTTCATGTACAATTTGC 58.948 33.333 0.00 5.70 36.56 3.68
1768 2025 8.330302 GCTAAATGATTTCATGTACAATTTGCC 58.670 33.333 0.00 0.00 36.56 4.52
1769 2026 6.890663 AATGATTTCATGTACAATTTGCCG 57.109 33.333 0.00 0.00 36.56 5.69
1770 2027 4.172505 TGATTTCATGTACAATTTGCCGC 58.827 39.130 0.00 0.00 0.00 6.53
1771 2028 3.932545 TTTCATGTACAATTTGCCGCT 57.067 38.095 0.00 0.00 0.00 5.52
1772 2029 5.124617 TGATTTCATGTACAATTTGCCGCTA 59.875 36.000 0.00 0.00 0.00 4.26
1773 2030 5.574891 TTTCATGTACAATTTGCCGCTAT 57.425 34.783 0.00 0.00 0.00 2.97
1774 2031 6.685527 TTTCATGTACAATTTGCCGCTATA 57.314 33.333 0.00 0.00 0.00 1.31
1775 2032 5.922739 TCATGTACAATTTGCCGCTATAG 57.077 39.130 0.00 0.00 0.00 1.31
1776 2033 4.213270 TCATGTACAATTTGCCGCTATAGC 59.787 41.667 15.09 15.09 37.78 2.97
1777 2034 2.875933 TGTACAATTTGCCGCTATAGCC 59.124 45.455 19.00 6.59 37.91 3.93
1778 2035 1.318576 ACAATTTGCCGCTATAGCCC 58.681 50.000 19.00 10.69 37.91 5.19
1779 2036 1.317613 CAATTTGCCGCTATAGCCCA 58.682 50.000 19.00 13.13 37.91 5.36
1780 2037 1.267806 CAATTTGCCGCTATAGCCCAG 59.732 52.381 19.00 9.17 37.91 4.45
1781 2038 0.890996 ATTTGCCGCTATAGCCCAGC 60.891 55.000 19.00 18.27 37.91 4.85
1782 2039 1.983119 TTTGCCGCTATAGCCCAGCT 61.983 55.000 19.00 0.00 43.41 4.24
1783 2040 1.118965 TTGCCGCTATAGCCCAGCTA 61.119 55.000 19.00 12.92 45.55 3.32
1803 2060 5.340803 GCTATAGCTGTTTTTAAGGGTTGC 58.659 41.667 17.75 0.00 38.21 4.17
1804 2061 4.801330 ATAGCTGTTTTTAAGGGTTGCC 57.199 40.909 0.00 0.00 0.00 4.52
1805 2062 1.339929 AGCTGTTTTTAAGGGTTGCCG 59.660 47.619 0.00 0.00 0.00 5.69
1806 2063 1.778334 CTGTTTTTAAGGGTTGCCGC 58.222 50.000 0.00 0.00 0.00 6.53
1807 2064 1.339929 CTGTTTTTAAGGGTTGCCGCT 59.660 47.619 0.00 0.00 34.93 5.52
1808 2065 2.554893 CTGTTTTTAAGGGTTGCCGCTA 59.445 45.455 0.00 0.00 32.78 4.26
1809 2066 3.158676 TGTTTTTAAGGGTTGCCGCTAT 58.841 40.909 0.00 0.00 32.78 2.97
1810 2067 4.333690 TGTTTTTAAGGGTTGCCGCTATA 58.666 39.130 0.00 0.00 32.78 1.31
1811 2068 4.951094 TGTTTTTAAGGGTTGCCGCTATAT 59.049 37.500 0.00 0.00 32.78 0.86
1812 2069 5.163602 TGTTTTTAAGGGTTGCCGCTATATG 60.164 40.000 0.00 0.00 32.78 1.78
1813 2070 2.178912 TAAGGGTTGCCGCTATATGC 57.821 50.000 0.00 0.00 38.57 3.14
1814 2071 0.537371 AAGGGTTGCCGCTATATGCC 60.537 55.000 0.00 0.00 38.78 4.40
1815 2072 1.228124 GGGTTGCCGCTATATGCCA 60.228 57.895 0.00 0.00 38.78 4.92
1816 2073 0.609131 GGGTTGCCGCTATATGCCAT 60.609 55.000 0.00 0.00 38.78 4.40
1817 2074 1.339631 GGGTTGCCGCTATATGCCATA 60.340 52.381 0.00 0.00 38.78 2.74
1818 2075 2.009774 GGTTGCCGCTATATGCCATAG 58.990 52.381 0.00 0.00 38.78 2.23
1819 2076 1.398390 GTTGCCGCTATATGCCATAGC 59.602 52.381 14.48 14.48 42.53 2.97
1820 2077 0.107703 TGCCGCTATATGCCATAGCC 60.108 55.000 17.28 8.46 42.89 3.93
1821 2078 0.815615 GCCGCTATATGCCATAGCCC 60.816 60.000 17.28 8.52 42.89 5.19
1822 2079 0.530650 CCGCTATATGCCATAGCCCG 60.531 60.000 17.28 7.98 42.89 6.13
1823 2080 1.154205 CGCTATATGCCATAGCCCGC 61.154 60.000 17.28 0.15 42.89 6.13
1824 2081 0.179000 GCTATATGCCATAGCCCGCT 59.821 55.000 13.81 0.00 40.69 5.52
1825 2082 1.412710 GCTATATGCCATAGCCCGCTA 59.587 52.381 13.81 0.00 40.69 4.26
1826 2083 2.037772 GCTATATGCCATAGCCCGCTAT 59.962 50.000 13.81 3.31 40.69 2.97
1827 2084 3.495100 GCTATATGCCATAGCCCGCTATT 60.495 47.826 13.81 0.00 40.69 1.73
1828 2085 3.652057 ATATGCCATAGCCCGCTATTT 57.348 42.857 6.48 0.00 37.16 1.40
1829 2086 4.771114 ATATGCCATAGCCCGCTATTTA 57.229 40.909 6.48 0.00 37.16 1.40
1830 2087 2.940994 TGCCATAGCCCGCTATTTAA 57.059 45.000 6.48 0.00 37.16 1.52
1831 2088 3.216187 TGCCATAGCCCGCTATTTAAA 57.784 42.857 6.48 0.00 37.16 1.52
1832 2089 3.556999 TGCCATAGCCCGCTATTTAAAA 58.443 40.909 6.48 0.00 37.16 1.52
1833 2090 3.316868 TGCCATAGCCCGCTATTTAAAAC 59.683 43.478 6.48 0.00 37.16 2.43
1834 2091 3.316868 GCCATAGCCCGCTATTTAAAACA 59.683 43.478 6.48 0.00 37.16 2.83
1835 2092 4.556699 GCCATAGCCCGCTATTTAAAACAG 60.557 45.833 6.48 0.00 37.16 3.16
1836 2093 4.578928 CCATAGCCCGCTATTTAAAACAGT 59.421 41.667 6.48 0.00 37.16 3.55
1837 2094 5.067283 CCATAGCCCGCTATTTAAAACAGTT 59.933 40.000 6.48 0.00 37.16 3.16
1838 2095 6.261381 CCATAGCCCGCTATTTAAAACAGTTA 59.739 38.462 6.48 0.00 37.16 2.24
1839 2096 7.201750 CCATAGCCCGCTATTTAAAACAGTTAA 60.202 37.037 6.48 0.00 37.16 2.01
1840 2097 6.769134 AGCCCGCTATTTAAAACAGTTAAT 57.231 33.333 0.00 0.00 0.00 1.40
1841 2098 7.868906 AGCCCGCTATTTAAAACAGTTAATA 57.131 32.000 0.00 0.00 0.00 0.98
1842 2099 8.459911 AGCCCGCTATTTAAAACAGTTAATAT 57.540 30.769 0.00 0.00 0.00 1.28
1843 2100 8.349983 AGCCCGCTATTTAAAACAGTTAATATG 58.650 33.333 0.00 0.00 0.00 1.78
1844 2101 7.114388 GCCCGCTATTTAAAACAGTTAATATGC 59.886 37.037 0.00 0.00 0.00 3.14
1845 2102 8.132362 CCCGCTATTTAAAACAGTTAATATGCA 58.868 33.333 0.00 0.00 0.00 3.96
1846 2103 9.677567 CCGCTATTTAAAACAGTTAATATGCAT 57.322 29.630 3.79 3.79 0.00 3.96
1857 2114 9.586732 AACAGTTAATATGCATATATGTTGGGT 57.413 29.630 24.19 14.53 30.00 4.51
1858 2115 9.231297 ACAGTTAATATGCATATATGTTGGGTC 57.769 33.333 19.39 4.02 30.00 4.46
1859 2116 9.230122 CAGTTAATATGCATATATGTTGGGTCA 57.770 33.333 19.39 3.09 30.00 4.02
1860 2117 9.979897 AGTTAATATGCATATATGTTGGGTCAT 57.020 29.630 19.39 9.78 30.00 3.06
1864 2121 8.882557 ATATGCATATATGTTGGGTCATTTCA 57.117 30.769 17.72 0.00 0.00 2.69
1865 2122 7.786046 ATGCATATATGTTGGGTCATTTCAT 57.214 32.000 14.14 2.15 0.00 2.57
1866 2123 7.600231 TGCATATATGTTGGGTCATTTCATT 57.400 32.000 14.14 0.00 0.00 2.57
1867 2124 7.660112 TGCATATATGTTGGGTCATTTCATTC 58.340 34.615 14.14 0.00 0.00 2.67
1868 2125 7.506599 TGCATATATGTTGGGTCATTTCATTCT 59.493 33.333 14.14 0.00 0.00 2.40
1869 2126 8.362639 GCATATATGTTGGGTCATTTCATTCTT 58.637 33.333 14.14 0.00 0.00 2.52
1874 2131 8.599624 ATGTTGGGTCATTTCATTCTTATTCT 57.400 30.769 0.00 0.00 0.00 2.40
1875 2132 8.055279 TGTTGGGTCATTTCATTCTTATTCTC 57.945 34.615 0.00 0.00 0.00 2.87
1876 2133 7.122650 TGTTGGGTCATTTCATTCTTATTCTCC 59.877 37.037 0.00 0.00 0.00 3.71
1877 2134 6.730447 TGGGTCATTTCATTCTTATTCTCCA 58.270 36.000 0.00 0.00 0.00 3.86
1878 2135 6.830324 TGGGTCATTTCATTCTTATTCTCCAG 59.170 38.462 0.00 0.00 0.00 3.86
1879 2136 6.830838 GGGTCATTTCATTCTTATTCTCCAGT 59.169 38.462 0.00 0.00 0.00 4.00
1880 2137 7.993183 GGGTCATTTCATTCTTATTCTCCAGTA 59.007 37.037 0.00 0.00 0.00 2.74
1881 2138 9.566432 GGTCATTTCATTCTTATTCTCCAGTAT 57.434 33.333 0.00 0.00 0.00 2.12
1897 2154 9.935241 TTCTCCAGTATCTAAATATGCATTCTC 57.065 33.333 3.54 0.00 0.00 2.87
1898 2155 9.093458 TCTCCAGTATCTAAATATGCATTCTCA 57.907 33.333 3.54 0.00 0.00 3.27
1899 2156 9.887629 CTCCAGTATCTAAATATGCATTCTCAT 57.112 33.333 3.54 0.00 0.00 2.90
1945 2202 7.703058 CAGGATGTTTTTCTATACCAAGGTT 57.297 36.000 0.00 0.00 0.00 3.50
1946 2203 7.538575 CAGGATGTTTTTCTATACCAAGGTTG 58.461 38.462 0.00 0.00 0.00 3.77
1947 2204 7.176690 CAGGATGTTTTTCTATACCAAGGTTGT 59.823 37.037 0.00 0.00 0.00 3.32
1948 2205 7.176690 AGGATGTTTTTCTATACCAAGGTTGTG 59.823 37.037 0.00 0.00 0.00 3.33
1949 2206 6.642707 TGTTTTTCTATACCAAGGTTGTGG 57.357 37.500 0.00 0.00 44.92 4.17
1960 2217 5.880054 CCAAGGTTGTGGTAAATGTCTAG 57.120 43.478 0.00 0.00 33.63 2.43
1961 2218 5.556915 CCAAGGTTGTGGTAAATGTCTAGA 58.443 41.667 0.00 0.00 33.63 2.43
1962 2219 6.180472 CCAAGGTTGTGGTAAATGTCTAGAT 58.820 40.000 0.00 0.00 33.63 1.98
1963 2220 6.659242 CCAAGGTTGTGGTAAATGTCTAGATT 59.341 38.462 0.00 0.00 33.63 2.40
1964 2221 7.176690 CCAAGGTTGTGGTAAATGTCTAGATTT 59.823 37.037 0.00 0.00 33.63 2.17
1965 2222 9.226606 CAAGGTTGTGGTAAATGTCTAGATTTA 57.773 33.333 0.00 0.00 0.00 1.40
1966 2223 9.449719 AAGGTTGTGGTAAATGTCTAGATTTAG 57.550 33.333 0.00 0.00 30.21 1.85
1967 2224 8.047310 AGGTTGTGGTAAATGTCTAGATTTAGG 58.953 37.037 0.00 0.00 30.21 2.69
1968 2225 8.044908 GGTTGTGGTAAATGTCTAGATTTAGGA 58.955 37.037 0.00 0.00 30.21 2.94
1969 2226 9.444600 GTTGTGGTAAATGTCTAGATTTAGGAA 57.555 33.333 0.00 0.00 30.21 3.36
1970 2227 9.667107 TTGTGGTAAATGTCTAGATTTAGGAAG 57.333 33.333 0.00 0.00 30.21 3.46
1971 2228 8.822805 TGTGGTAAATGTCTAGATTTAGGAAGT 58.177 33.333 0.00 0.00 30.21 3.01
1972 2229 9.099454 GTGGTAAATGTCTAGATTTAGGAAGTG 57.901 37.037 0.00 0.00 30.21 3.16
1973 2230 8.822805 TGGTAAATGTCTAGATTTAGGAAGTGT 58.177 33.333 0.00 0.00 30.21 3.55
1977 2234 8.840200 AATGTCTAGATTTAGGAAGTGTAGGA 57.160 34.615 0.00 0.00 0.00 2.94
1978 2235 8.840200 ATGTCTAGATTTAGGAAGTGTAGGAA 57.160 34.615 0.00 0.00 0.00 3.36
1979 2236 8.840200 TGTCTAGATTTAGGAAGTGTAGGAAT 57.160 34.615 0.00 0.00 0.00 3.01
1980 2237 8.915036 TGTCTAGATTTAGGAAGTGTAGGAATC 58.085 37.037 0.00 0.00 0.00 2.52
1981 2238 8.915036 GTCTAGATTTAGGAAGTGTAGGAATCA 58.085 37.037 0.00 0.00 0.00 2.57
1982 2239 9.488762 TCTAGATTTAGGAAGTGTAGGAATCAA 57.511 33.333 0.00 0.00 0.00 2.57
1985 2242 9.401058 AGATTTAGGAAGTGTAGGAATCAATTG 57.599 33.333 0.00 0.00 0.00 2.32
1986 2243 9.178758 GATTTAGGAAGTGTAGGAATCAATTGT 57.821 33.333 5.13 0.00 0.00 2.71
1987 2244 8.561738 TTTAGGAAGTGTAGGAATCAATTGTC 57.438 34.615 5.13 0.00 0.00 3.18
1988 2245 6.380079 AGGAAGTGTAGGAATCAATTGTCT 57.620 37.500 5.13 2.52 0.00 3.41
1989 2246 6.410540 AGGAAGTGTAGGAATCAATTGTCTC 58.589 40.000 5.13 3.36 0.00 3.36
1990 2247 6.013379 AGGAAGTGTAGGAATCAATTGTCTCA 60.013 38.462 5.13 0.00 0.00 3.27
1991 2248 6.825721 GGAAGTGTAGGAATCAATTGTCTCAT 59.174 38.462 5.13 3.89 0.00 2.90
1992 2249 7.337942 GGAAGTGTAGGAATCAATTGTCTCATT 59.662 37.037 5.13 0.00 0.00 2.57
1993 2250 7.856145 AGTGTAGGAATCAATTGTCTCATTC 57.144 36.000 5.13 7.13 0.00 2.67
1994 2251 7.628234 AGTGTAGGAATCAATTGTCTCATTCT 58.372 34.615 14.01 6.33 0.00 2.40
1995 2252 8.105829 AGTGTAGGAATCAATTGTCTCATTCTT 58.894 33.333 14.01 10.65 0.00 2.52
1996 2253 8.394121 GTGTAGGAATCAATTGTCTCATTCTTC 58.606 37.037 14.01 7.99 0.00 2.87
2278 2590 7.204737 CCGAAGGCGTTTTCAAATTTTATAG 57.795 36.000 0.00 0.00 46.14 1.31
2280 2592 7.327518 CCGAAGGCGTTTTCAAATTTTATAGTT 59.672 33.333 0.00 0.00 46.14 2.24
2281 2593 8.153411 CGAAGGCGTTTTCAAATTTTATAGTTG 58.847 33.333 0.00 0.00 33.23 3.16
2282 2594 8.880878 AAGGCGTTTTCAAATTTTATAGTTGT 57.119 26.923 0.00 0.00 33.67 3.32
2283 2595 8.880878 AGGCGTTTTCAAATTTTATAGTTGTT 57.119 26.923 0.00 0.00 33.67 2.83
2284 2596 9.320352 AGGCGTTTTCAAATTTTATAGTTGTTT 57.680 25.926 0.00 0.00 33.67 2.83
2285 2597 9.364110 GGCGTTTTCAAATTTTATAGTTGTTTG 57.636 29.630 0.00 0.00 33.67 2.93
2286 2598 9.909043 GCGTTTTCAAATTTTATAGTTGTTTGT 57.091 25.926 0.00 0.00 33.67 2.83
2370 2682 9.932699 TGTTTTCAACTCAAAATTATGCATTTG 57.067 25.926 3.54 4.11 35.09 2.32
2371 2683 9.934190 GTTTTCAACTCAAAATTATGCATTTGT 57.066 25.926 3.54 0.00 37.68 2.83
2421 2733 4.223255 TCCATTCTGGTTACACGGTTGATA 59.777 41.667 0.00 0.00 39.03 2.15
2428 2740 6.759356 TCTGGTTACACGGTTGATATATTGTG 59.241 38.462 0.00 0.00 0.00 3.33
2515 2827 5.233050 GTGTGAATCTGATACGGATGAGTTG 59.767 44.000 0.00 0.00 28.96 3.16
2617 2929 2.794103 TCACTGGGTTCATTCCATGTG 58.206 47.619 0.00 0.00 36.10 3.21
2638 3143 3.949113 TGGGTGTAGTGAAAACTTTGGTC 59.051 43.478 0.00 0.00 0.00 4.02
2646 3151 4.452455 AGTGAAAACTTTGGTCGAGCATAG 59.548 41.667 26.61 26.61 0.00 2.23
2707 3212 5.062528 TCCATTATATGCTCAATTGTCGCA 58.937 37.500 21.16 21.16 38.14 5.10
2836 3341 4.637534 ACTTATGGTGCACTTCATGACATC 59.362 41.667 17.98 0.00 0.00 3.06
3118 3624 2.189594 TTGCCACAGATCCAGAACAG 57.810 50.000 0.00 0.00 0.00 3.16
3208 3714 7.027778 ACTGAAGGAGTTGTTCAATGTAAAC 57.972 36.000 0.00 0.00 33.56 2.01
3235 3741 4.661222 TCATTGTGAGCCAAACTAATCCA 58.339 39.130 0.00 0.00 36.44 3.41
3254 3760 2.174360 CACACATCTCTCCACTCCTCA 58.826 52.381 0.00 0.00 0.00 3.86
3352 3882 3.659786 TGTGTGTGGTGTATCTTAGCAC 58.340 45.455 0.00 0.00 44.45 4.40
3353 3883 3.323691 TGTGTGTGGTGTATCTTAGCACT 59.676 43.478 8.50 0.00 44.49 4.40
3358 3888 2.168521 TGGTGTATCTTAGCACTCAGGC 59.831 50.000 0.00 0.00 36.03 4.85
3361 3891 2.432146 TGTATCTTAGCACTCAGGCCTG 59.568 50.000 27.87 27.87 0.00 4.85
3386 3916 8.296713 TGTAGCTCTTTTTGCAAGTAATTTAGG 58.703 33.333 0.00 0.00 0.00 2.69
3410 3940 6.073548 GGATTGTTATCCTGCTCGTTGAATAG 60.074 42.308 0.00 0.00 45.88 1.73
3434 3964 4.091549 AGTTCATCATTTCCCTGCACAAT 58.908 39.130 0.00 0.00 0.00 2.71
3439 3969 7.002250 TCATCATTTCCCTGCACAATAAAAA 57.998 32.000 0.00 0.00 0.00 1.94
3456 3986 3.855689 AAAAATGCTCACCATCTTCCG 57.144 42.857 0.00 0.00 31.43 4.30
3458 3988 3.287867 AAATGCTCACCATCTTCCGAT 57.712 42.857 0.00 0.00 31.43 4.18
3469 3999 1.133253 CTTCCGATGTGTTGCTGCG 59.867 57.895 0.00 0.00 0.00 5.18
3488 4018 2.286418 GCGCAATGCATAACTGTCTACC 60.286 50.000 5.91 0.00 45.45 3.18
3490 4020 6.536444 GCGCAATGCATAACTGTCTACCAG 62.536 50.000 5.91 0.00 44.96 4.00
3495 4025 7.148507 GCAATGCATAACTGTCTACCAGATATC 60.149 40.741 0.00 0.00 44.49 1.63
3496 4026 6.976934 TGCATAACTGTCTACCAGATATCA 57.023 37.500 5.32 0.00 44.49 2.15
3497 4027 7.544804 TGCATAACTGTCTACCAGATATCAT 57.455 36.000 5.32 0.00 44.49 2.45
3498 4028 8.650143 TGCATAACTGTCTACCAGATATCATA 57.350 34.615 5.32 0.00 44.49 2.15
3503 4033 6.929625 ACTGTCTACCAGATATCATATGCAC 58.070 40.000 5.32 0.00 44.49 4.57
3525 4112 1.078143 CTGGTAGCACTGAAGGGCC 60.078 63.158 0.00 0.00 0.00 5.80
3526 4113 2.272471 GGTAGCACTGAAGGGCCC 59.728 66.667 16.46 16.46 0.00 5.80
3532 4119 1.002134 CACTGAAGGGCCCATCGTT 60.002 57.895 27.56 9.62 0.00 3.85
3557 4144 5.305139 ACGGGTTGCTGTTATTATTTGAC 57.695 39.130 0.00 0.00 0.00 3.18
3569 4156 6.126883 TGTTATTATTTGACGGGAGGACATCT 60.127 38.462 0.00 0.00 0.00 2.90
3571 4158 3.821421 ATTTGACGGGAGGACATCTAC 57.179 47.619 0.00 0.00 0.00 2.59
3573 4160 2.454336 TGACGGGAGGACATCTACAT 57.546 50.000 0.00 0.00 0.00 2.29
3601 4188 5.089970 TCTGTAGCAAATACATCTGCACT 57.910 39.130 0.00 0.00 43.44 4.40
3605 4192 7.770433 TCTGTAGCAAATACATCTGCACTTATT 59.230 33.333 0.00 0.00 43.44 1.40
3606 4193 8.279970 TGTAGCAAATACATCTGCACTTATTT 57.720 30.769 0.00 0.00 39.52 1.40
3607 4194 8.183536 TGTAGCAAATACATCTGCACTTATTTG 58.816 33.333 14.56 14.56 39.52 2.32
3621 4208 7.698836 GCACTTATTTGCAAGAAGAAAGAAA 57.301 32.000 22.92 0.00 42.49 2.52
3622 4209 8.130307 GCACTTATTTGCAAGAAGAAAGAAAA 57.870 30.769 22.92 0.00 42.49 2.29
3623 4210 8.271487 GCACTTATTTGCAAGAAGAAAGAAAAG 58.729 33.333 22.92 9.19 42.49 2.27
3624 4211 9.520204 CACTTATTTGCAAGAAGAAAGAAAAGA 57.480 29.630 22.92 0.00 0.00 2.52
3627 4214 9.868277 TTATTTGCAAGAAGAAAGAAAAGAACA 57.132 25.926 0.00 0.00 0.00 3.18
3628 4215 7.581011 TTTGCAAGAAGAAAGAAAAGAACAC 57.419 32.000 0.00 0.00 0.00 3.32
3629 4216 5.650543 TGCAAGAAGAAAGAAAAGAACACC 58.349 37.500 0.00 0.00 0.00 4.16
3630 4217 5.418840 TGCAAGAAGAAAGAAAAGAACACCT 59.581 36.000 0.00 0.00 0.00 4.00
3631 4218 5.745769 GCAAGAAGAAAGAAAAGAACACCTG 59.254 40.000 0.00 0.00 0.00 4.00
3632 4219 5.506686 AGAAGAAAGAAAAGAACACCTGC 57.493 39.130 0.00 0.00 0.00 4.85
3633 4220 3.971032 AGAAAGAAAAGAACACCTGCG 57.029 42.857 0.00 0.00 0.00 5.18
3634 4221 2.033424 AGAAAGAAAAGAACACCTGCGC 59.967 45.455 0.00 0.00 0.00 6.09
3691 4279 5.864474 CCATGTCTTACTGAACACTAGACAC 59.136 44.000 0.00 0.00 45.45 3.67
3699 4287 4.039730 ACTGAACACTAGACACTGCAATCT 59.960 41.667 0.00 0.00 0.00 2.40
3710 4298 5.048224 AGACACTGCAATCTCTTCCAAATTG 60.048 40.000 0.00 0.00 34.30 2.32
3749 4337 7.373617 TGCATTACCAGGTCTAATTCTGATA 57.626 36.000 0.00 0.00 33.11 2.15
3830 4418 1.284785 CTGGAAATTGGCCTCCCACTA 59.715 52.381 3.32 0.00 41.97 2.74
3921 4509 8.204836 CAGTAGCTCAGGTACCTTTGTTAATAT 58.795 37.037 13.15 0.00 37.24 1.28
3956 4547 4.955811 TGTATAGGTAATGCTGGTCCTG 57.044 45.455 0.00 0.00 0.00 3.86
3972 4563 3.259123 GGTCCTGTGGATTCAAAATGCTT 59.741 43.478 0.00 0.00 32.73 3.91
4213 4806 2.304221 TCCCAGGGATATACCGACAG 57.696 55.000 3.01 0.00 40.11 3.51
4221 4814 3.549625 GGGATATACCGACAGTGTTCGAC 60.550 52.174 14.17 0.00 41.78 4.20
4343 4936 4.713824 TCACCAAGGTACTATTCGAGTG 57.286 45.455 0.00 0.00 38.49 3.51
4355 4948 2.779951 TTCGAGTGGATGGTGCACCG 62.780 60.000 30.07 15.67 39.72 4.94
4356 4949 3.127533 GAGTGGATGGTGCACCGC 61.128 66.667 30.07 23.42 39.72 5.68
4357 4950 3.899981 GAGTGGATGGTGCACCGCA 62.900 63.158 30.07 15.14 39.72 5.69
4388 4981 2.061773 CATGTTCGTCAGAGGTCACAC 58.938 52.381 1.49 0.00 0.00 3.82
4578 5171 5.011635 GGTATTTTCACAGGACCCACATTTT 59.988 40.000 0.00 0.00 0.00 1.82
4580 5173 2.286365 TCACAGGACCCACATTTTCC 57.714 50.000 0.00 0.00 0.00 3.13
4601 5194 4.915809 TCCAGAGATCCATATCCAACCAAT 59.084 41.667 0.00 0.00 31.98 3.16
4616 5209 4.580580 CCAACCAATATTTCCAGAGCTACC 59.419 45.833 0.00 0.00 0.00 3.18
4646 5239 2.101415 CGGTCCAGATAGATGCACAGAA 59.899 50.000 0.00 0.00 0.00 3.02
4647 5240 3.430790 CGGTCCAGATAGATGCACAGAAA 60.431 47.826 0.00 0.00 0.00 2.52
4844 6783 4.756642 GTGGACAGAACACATTCAGAATCA 59.243 41.667 0.00 0.00 38.67 2.57
4975 6914 0.163788 GTTGACGACAACGCAGATGG 59.836 55.000 14.57 0.00 45.06 3.51
5059 7049 4.748892 TGCAGTGTCTATTTAGAGAGCAC 58.251 43.478 0.00 0.00 32.01 4.40
5083 7073 3.268330 CTGACAGCAGCAATGATGTACT 58.732 45.455 0.00 0.00 38.65 2.73
5115 7105 9.202273 GATAATTGCAGTGTCTATTTAGAGAGG 57.798 37.037 0.00 0.00 32.01 3.69
5152 7142 4.437794 GCATATCTGTTGTGTGGTGTCATG 60.438 45.833 0.00 0.00 0.00 3.07
5203 7194 1.668151 GCCTTTCTTGGCGTCGACT 60.668 57.895 14.70 0.00 43.74 4.18
5264 7256 6.696411 ACCTGTCAAGATTCTTCTGAACTAG 58.304 40.000 0.00 0.00 34.71 2.57
5269 7261 6.306837 GTCAAGATTCTTCTGAACTAGACACG 59.693 42.308 0.00 0.00 34.43 4.49
5280 7272 6.972901 TCTGAACTAGACACGCATTATAACAG 59.027 38.462 0.00 0.00 0.00 3.16
5287 7279 2.545526 CACGCATTATAACAGCTCTGGG 59.454 50.000 9.33 4.24 34.19 4.45
5306 7298 4.331968 TGGGAATCCATTTCTGTACACAC 58.668 43.478 0.09 0.00 38.32 3.82
5401 7395 4.454678 ACTCAAATGTTGAAGCTCACTGA 58.545 39.130 0.00 0.00 39.58 3.41
5405 7399 6.441274 TCAAATGTTGAAGCTCACTGATTTC 58.559 36.000 0.00 0.00 36.59 2.17
5406 7400 6.263842 TCAAATGTTGAAGCTCACTGATTTCT 59.736 34.615 0.00 0.00 36.59 2.52
5407 7401 7.445096 TCAAATGTTGAAGCTCACTGATTTCTA 59.555 33.333 0.00 0.00 36.59 2.10
5475 7469 5.818678 ACTGAATGTTACACAAGGTCCTA 57.181 39.130 0.00 0.00 0.00 2.94
5476 7470 6.182507 ACTGAATGTTACACAAGGTCCTAA 57.817 37.500 0.00 0.00 0.00 2.69
5481 7475 4.444536 TGTTACACAAGGTCCTAACACAC 58.555 43.478 0.00 0.00 0.00 3.82
5483 7477 1.142262 ACACAAGGTCCTAACACACCC 59.858 52.381 0.00 0.00 32.45 4.61
5484 7478 1.142060 CACAAGGTCCTAACACACCCA 59.858 52.381 0.00 0.00 32.45 4.51
5695 7690 0.523072 CCTTCAGGTTGCCATTCACG 59.477 55.000 0.00 0.00 0.00 4.35
5698 7693 0.321564 TCAGGTTGCCATTCACGGAG 60.322 55.000 0.00 0.00 0.00 4.63
5701 7696 1.586154 GGTTGCCATTCACGGAGGTG 61.586 60.000 0.00 0.00 45.78 4.00
5746 7741 2.962253 GCGCTGATGTACCTCGCC 60.962 66.667 0.00 0.00 39.91 5.54
5863 7866 0.393537 CCCTCACTGCATCACCCTTC 60.394 60.000 0.00 0.00 0.00 3.46
5869 7872 0.252479 CTGCATCACCCTTCTGCTCT 59.748 55.000 0.00 0.00 36.84 4.09
5872 7875 1.202330 CATCACCCTTCTGCTCTCCT 58.798 55.000 0.00 0.00 0.00 3.69
5878 7881 1.204113 CCTTCTGCTCTCCTTGGGGT 61.204 60.000 0.00 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.059202 TCCTTAATTATACTTCCTCCGTTCC 57.941 40.000 0.00 0.00 0.00 3.62
3 4 8.953368 TTTCCTTAATTATACTTCCTCCGTTC 57.047 34.615 0.00 0.00 0.00 3.95
4 5 8.765517 TCTTTCCTTAATTATACTTCCTCCGTT 58.234 33.333 0.00 0.00 0.00 4.44
5 6 8.315220 TCTTTCCTTAATTATACTTCCTCCGT 57.685 34.615 0.00 0.00 0.00 4.69
6 7 9.609346 TTTCTTTCCTTAATTATACTTCCTCCG 57.391 33.333 0.00 0.00 0.00 4.63
17 18 9.902196 GTTCGGAATGTTTTCTTTCCTTAATTA 57.098 29.630 0.00 0.00 45.93 1.40
18 19 7.870954 GGTTCGGAATGTTTTCTTTCCTTAATT 59.129 33.333 0.00 0.00 45.93 1.40
19 20 7.375834 GGTTCGGAATGTTTTCTTTCCTTAAT 58.624 34.615 0.00 0.00 45.93 1.40
20 21 6.239092 GGGTTCGGAATGTTTTCTTTCCTTAA 60.239 38.462 0.00 3.83 45.93 1.85
21 22 5.242171 GGGTTCGGAATGTTTTCTTTCCTTA 59.758 40.000 0.00 0.00 45.93 2.69
22 23 4.038763 GGGTTCGGAATGTTTTCTTTCCTT 59.961 41.667 0.00 0.00 45.93 3.36
23 24 3.572682 GGGTTCGGAATGTTTTCTTTCCT 59.427 43.478 0.00 0.00 45.93 3.36
24 25 3.305813 GGGGTTCGGAATGTTTTCTTTCC 60.306 47.826 0.00 0.00 45.18 3.13
25 26 3.305813 GGGGGTTCGGAATGTTTTCTTTC 60.306 47.826 0.00 0.00 34.51 2.62
26 27 2.631062 GGGGGTTCGGAATGTTTTCTTT 59.369 45.455 0.00 0.00 32.16 2.52
27 28 2.244695 GGGGGTTCGGAATGTTTTCTT 58.755 47.619 0.00 0.00 32.16 2.52
28 29 1.919240 GGGGGTTCGGAATGTTTTCT 58.081 50.000 0.00 0.00 32.16 2.52
44 45 8.493787 AGTAGTATATCTTAAGTTGAAGGGGG 57.506 38.462 1.63 0.00 0.00 5.40
50 51 8.997323 GCCGACTAGTAGTATATCTTAAGTTGA 58.003 37.037 1.88 0.00 0.00 3.18
51 52 9.001542 AGCCGACTAGTAGTATATCTTAAGTTG 57.998 37.037 1.88 0.00 0.00 3.16
52 53 9.218440 GAGCCGACTAGTAGTATATCTTAAGTT 57.782 37.037 1.88 0.00 0.00 2.66
53 54 8.373981 TGAGCCGACTAGTAGTATATCTTAAGT 58.626 37.037 1.88 0.00 0.00 2.24
54 55 8.774890 TGAGCCGACTAGTAGTATATCTTAAG 57.225 38.462 1.88 0.00 0.00 1.85
55 56 9.565090 TTTGAGCCGACTAGTAGTATATCTTAA 57.435 33.333 1.88 0.00 0.00 1.85
56 57 9.565090 TTTTGAGCCGACTAGTAGTATATCTTA 57.435 33.333 1.88 0.00 0.00 2.10
57 58 8.461249 TTTTGAGCCGACTAGTAGTATATCTT 57.539 34.615 1.88 0.00 0.00 2.40
58 59 8.461249 TTTTTGAGCCGACTAGTAGTATATCT 57.539 34.615 1.88 0.00 0.00 1.98
59 60 8.566260 TCTTTTTGAGCCGACTAGTAGTATATC 58.434 37.037 1.88 0.59 0.00 1.63
60 61 8.461249 TCTTTTTGAGCCGACTAGTAGTATAT 57.539 34.615 1.88 0.00 0.00 0.86
61 62 7.870509 TCTTTTTGAGCCGACTAGTAGTATA 57.129 36.000 1.88 0.00 0.00 1.47
62 63 6.770746 TCTTTTTGAGCCGACTAGTAGTAT 57.229 37.500 1.88 0.00 0.00 2.12
63 64 6.579666 TTCTTTTTGAGCCGACTAGTAGTA 57.420 37.500 1.88 0.00 0.00 1.82
64 65 5.464030 TTCTTTTTGAGCCGACTAGTAGT 57.536 39.130 1.37 1.37 0.00 2.73
65 66 5.927115 AGTTTCTTTTTGAGCCGACTAGTAG 59.073 40.000 0.00 0.00 0.00 2.57
66 67 5.850614 AGTTTCTTTTTGAGCCGACTAGTA 58.149 37.500 0.00 0.00 0.00 1.82
67 68 4.704965 AGTTTCTTTTTGAGCCGACTAGT 58.295 39.130 0.00 0.00 0.00 2.57
68 69 5.674933 AAGTTTCTTTTTGAGCCGACTAG 57.325 39.130 0.00 0.00 0.00 2.57
69 70 6.987992 TCTTAAGTTTCTTTTTGAGCCGACTA 59.012 34.615 1.63 0.00 0.00 2.59
70 71 5.820947 TCTTAAGTTTCTTTTTGAGCCGACT 59.179 36.000 1.63 0.00 0.00 4.18
71 72 6.056428 TCTTAAGTTTCTTTTTGAGCCGAC 57.944 37.500 1.63 0.00 0.00 4.79
72 73 6.877611 ATCTTAAGTTTCTTTTTGAGCCGA 57.122 33.333 1.63 0.00 0.00 5.54
73 74 9.704098 GTATATCTTAAGTTTCTTTTTGAGCCG 57.296 33.333 1.63 0.00 0.00 5.52
116 117 7.008992 CGCACCTGAAAAATAGTACTACTGTAC 59.991 40.741 4.31 0.00 46.89 2.90
117 118 7.031372 CGCACCTGAAAAATAGTACTACTGTA 58.969 38.462 4.31 0.00 0.00 2.74
118 119 5.867716 CGCACCTGAAAAATAGTACTACTGT 59.132 40.000 4.31 0.00 0.00 3.55
119 120 5.220416 GCGCACCTGAAAAATAGTACTACTG 60.220 44.000 4.31 0.00 0.00 2.74
120 121 4.868734 GCGCACCTGAAAAATAGTACTACT 59.131 41.667 4.31 0.00 0.00 2.57
121 122 4.259690 CGCGCACCTGAAAAATAGTACTAC 60.260 45.833 8.75 0.00 0.00 2.73
122 123 3.861113 CGCGCACCTGAAAAATAGTACTA 59.139 43.478 8.75 4.77 0.00 1.82
123 124 2.671396 CGCGCACCTGAAAAATAGTACT 59.329 45.455 8.75 0.00 0.00 2.73
124 125 2.414138 ACGCGCACCTGAAAAATAGTAC 59.586 45.455 5.73 0.00 0.00 2.73
125 126 2.413796 CACGCGCACCTGAAAAATAGTA 59.586 45.455 5.73 0.00 0.00 1.82
126 127 1.196808 CACGCGCACCTGAAAAATAGT 59.803 47.619 5.73 0.00 0.00 2.12
127 128 1.196808 ACACGCGCACCTGAAAAATAG 59.803 47.619 5.73 0.00 0.00 1.73
142 143 0.179179 GTAGGAGTACACCGACACGC 60.179 60.000 15.78 0.00 35.99 5.34
269 270 4.621087 AAGCAGTTGGGTGGGGGC 62.621 66.667 0.00 0.00 0.00 5.80
270 271 2.283173 GAAGCAGTTGGGTGGGGG 60.283 66.667 0.00 0.00 0.00 5.40
391 398 4.301027 GCGGGATACGGGAGCTGG 62.301 72.222 0.00 0.00 44.51 4.85
598 626 1.298859 CGTGGGGGAAAGAAGAAGCG 61.299 60.000 0.00 0.00 0.00 4.68
636 664 1.371022 CGATCTCGATCACGGCCTG 60.371 63.158 0.00 0.00 43.02 4.85
655 683 1.632046 AAATAAGCACCGTGGTCGCG 61.632 55.000 3.19 0.00 35.54 5.87
664 692 0.935196 CGGCGACCTAAATAAGCACC 59.065 55.000 0.00 0.00 0.00 5.01
690 931 0.669318 TGAACTGCCGGATGAACGAC 60.669 55.000 5.05 0.00 35.47 4.34
695 936 2.268920 GGCTGAACTGCCGGATGA 59.731 61.111 5.05 0.00 43.74 2.92
769 1010 1.592400 AAGCCAATCGACGACGGAGA 61.592 55.000 17.19 0.00 40.21 3.71
770 1011 1.153823 AAGCCAATCGACGACGGAG 60.154 57.895 17.19 1.13 40.21 4.63
857 1107 4.970003 CAGCCTTTGTTCGACTGTAAAAAG 59.030 41.667 0.00 0.00 0.00 2.27
878 1130 3.003482 GCTTGGATTATCAGCAGAAGCAG 59.997 47.826 0.00 0.00 45.49 4.24
925 1177 4.698575 ACTCCAGCTCGATTTTAATCTCC 58.301 43.478 1.41 0.00 33.24 3.71
932 1184 3.486383 TGGAAAACTCCAGCTCGATTTT 58.514 40.909 0.00 0.00 34.33 1.82
985 1237 1.938577 CTCCATTGACGGCTGAATGAG 59.061 52.381 0.00 0.00 32.24 2.90
1080 1333 2.125188 GAGCTGAGCAGGAGCACC 60.125 66.667 7.39 0.00 45.49 5.01
1330 1583 2.181021 CACCCACTCCTCGTACGC 59.819 66.667 11.24 0.00 0.00 4.42
1377 1630 1.658114 CGACTCGTTGACCTGGTCA 59.342 57.895 25.12 25.12 41.09 4.02
1677 1934 5.171339 ATAGCCGGCTATTTGAGAATCAT 57.829 39.130 37.79 17.70 36.61 2.45
1678 1935 4.623932 ATAGCCGGCTATTTGAGAATCA 57.376 40.909 37.79 16.11 38.30 2.57
1679 1936 4.568760 GCTATAGCCGGCTATTTGAGAATC 59.431 45.833 44.65 23.06 39.65 2.52
1680 1937 4.508662 GCTATAGCCGGCTATTTGAGAAT 58.491 43.478 44.65 27.57 39.65 2.40
1681 1938 3.926616 GCTATAGCCGGCTATTTGAGAA 58.073 45.455 44.65 28.53 39.65 2.87
1682 1939 3.594603 GCTATAGCCGGCTATTTGAGA 57.405 47.619 44.65 29.19 39.65 3.27
1697 1954 3.011821 AGCAGAGCTATAGTGGGGCTATA 59.988 47.826 0.84 0.00 40.61 1.31
1698 1955 2.183679 GCAGAGCTATAGTGGGGCTAT 58.816 52.381 0.84 0.00 42.63 2.97
1699 1956 1.148027 AGCAGAGCTATAGTGGGGCTA 59.852 52.381 0.84 0.00 36.99 3.93
1700 1957 0.105246 AGCAGAGCTATAGTGGGGCT 60.105 55.000 0.84 3.73 36.99 5.19
1701 1958 1.633774 TAGCAGAGCTATAGTGGGGC 58.366 55.000 0.84 1.45 40.44 5.80
1712 1969 2.543430 GCTCAAACAGCTATAGCAGAGC 59.457 50.000 26.07 25.78 45.83 4.09
1724 1981 1.005294 GCGGCAACATGCTCAAACAG 61.005 55.000 2.00 0.00 44.28 3.16
1725 1982 1.007502 GCGGCAACATGCTCAAACA 60.008 52.632 2.00 0.00 44.28 2.83
1726 1983 0.521291 TAGCGGCAACATGCTCAAAC 59.479 50.000 1.45 0.00 44.28 2.93
1727 1984 1.242989 TTAGCGGCAACATGCTCAAA 58.757 45.000 1.45 0.00 44.28 2.69
1728 1985 1.242989 TTTAGCGGCAACATGCTCAA 58.757 45.000 1.45 0.00 44.28 3.02
1729 1986 1.132834 CATTTAGCGGCAACATGCTCA 59.867 47.619 1.45 0.00 44.28 4.26
1730 1987 1.401552 TCATTTAGCGGCAACATGCTC 59.598 47.619 1.45 0.00 44.28 4.26
1731 1988 1.462616 TCATTTAGCGGCAACATGCT 58.537 45.000 1.45 0.00 44.28 3.79
1732 1989 2.497107 ATCATTTAGCGGCAACATGC 57.503 45.000 1.45 0.00 44.08 4.06
1733 1990 4.422840 TGAAATCATTTAGCGGCAACATG 58.577 39.130 1.45 0.75 0.00 3.21
1734 1991 4.717233 TGAAATCATTTAGCGGCAACAT 57.283 36.364 1.45 0.00 0.00 2.71
1735 1992 4.082300 ACATGAAATCATTTAGCGGCAACA 60.082 37.500 0.00 0.00 33.61 3.33
1736 1993 4.423732 ACATGAAATCATTTAGCGGCAAC 58.576 39.130 0.00 0.00 33.61 4.17
1737 1994 4.717233 ACATGAAATCATTTAGCGGCAA 57.283 36.364 0.00 0.00 33.61 4.52
1738 1995 4.637977 TGTACATGAAATCATTTAGCGGCA 59.362 37.500 0.00 0.00 33.61 5.69
1739 1996 5.168526 TGTACATGAAATCATTTAGCGGC 57.831 39.130 0.00 0.00 33.61 6.53
1740 1997 8.533965 CAAATTGTACATGAAATCATTTAGCGG 58.466 33.333 0.00 0.00 33.61 5.52
1741 1998 8.051909 GCAAATTGTACATGAAATCATTTAGCG 58.948 33.333 0.00 0.00 33.61 4.26
1742 1999 8.330302 GGCAAATTGTACATGAAATCATTTAGC 58.670 33.333 0.00 4.99 33.61 3.09
1743 2000 8.533965 CGGCAAATTGTACATGAAATCATTTAG 58.466 33.333 0.00 0.00 33.61 1.85
1744 2001 7.009999 GCGGCAAATTGTACATGAAATCATTTA 59.990 33.333 0.00 0.00 33.61 1.40
1745 2002 6.183360 GCGGCAAATTGTACATGAAATCATTT 60.183 34.615 0.00 0.00 33.61 2.32
1746 2003 5.291614 GCGGCAAATTGTACATGAAATCATT 59.708 36.000 0.00 0.00 33.61 2.57
1747 2004 4.805192 GCGGCAAATTGTACATGAAATCAT 59.195 37.500 0.00 0.00 36.96 2.45
1748 2005 4.082300 AGCGGCAAATTGTACATGAAATCA 60.082 37.500 0.00 0.00 0.00 2.57
1749 2006 4.423732 AGCGGCAAATTGTACATGAAATC 58.576 39.130 0.00 0.00 0.00 2.17
1750 2007 4.454728 AGCGGCAAATTGTACATGAAAT 57.545 36.364 0.00 0.00 0.00 2.17
1751 2008 3.932545 AGCGGCAAATTGTACATGAAA 57.067 38.095 0.00 0.00 0.00 2.69
1752 2009 5.277779 GCTATAGCGGCAAATTGTACATGAA 60.278 40.000 9.40 0.00 0.00 2.57
1753 2010 4.213270 GCTATAGCGGCAAATTGTACATGA 59.787 41.667 9.40 0.00 0.00 3.07
1754 2011 4.466828 GCTATAGCGGCAAATTGTACATG 58.533 43.478 9.40 0.00 0.00 3.21
1755 2012 3.502211 GGCTATAGCGGCAAATTGTACAT 59.498 43.478 18.30 0.00 43.26 2.29
1756 2013 2.875933 GGCTATAGCGGCAAATTGTACA 59.124 45.455 18.30 0.00 43.26 2.90
1757 2014 2.225727 GGGCTATAGCGGCAAATTGTAC 59.774 50.000 18.30 0.00 43.26 2.90
1758 2015 2.158740 TGGGCTATAGCGGCAAATTGTA 60.159 45.455 18.30 0.00 43.26 2.41
1759 2016 1.318576 GGGCTATAGCGGCAAATTGT 58.681 50.000 18.30 0.00 43.26 2.71
1760 2017 1.267806 CTGGGCTATAGCGGCAAATTG 59.732 52.381 18.30 0.00 43.26 2.32
1761 2018 1.609208 CTGGGCTATAGCGGCAAATT 58.391 50.000 18.30 0.00 43.26 1.82
1762 2019 0.890996 GCTGGGCTATAGCGGCAAAT 60.891 55.000 18.30 0.00 43.26 2.32
1763 2020 1.525995 GCTGGGCTATAGCGGCAAA 60.526 57.895 18.30 1.50 43.26 3.68
1764 2021 1.118965 TAGCTGGGCTATAGCGGCAA 61.119 55.000 26.14 11.09 45.61 4.52
1765 2022 1.533033 TAGCTGGGCTATAGCGGCA 60.533 57.895 26.14 15.52 45.61 5.69
1766 2023 3.377656 TAGCTGGGCTATAGCGGC 58.622 61.111 18.30 19.74 45.61 6.53
1780 2037 5.340803 GCAACCCTTAAAAACAGCTATAGC 58.659 41.667 17.33 17.33 42.49 2.97
1781 2038 5.448632 CGGCAACCCTTAAAAACAGCTATAG 60.449 44.000 0.00 0.00 0.00 1.31
1782 2039 4.396790 CGGCAACCCTTAAAAACAGCTATA 59.603 41.667 0.00 0.00 0.00 1.31
1783 2040 3.192633 CGGCAACCCTTAAAAACAGCTAT 59.807 43.478 0.00 0.00 0.00 2.97
1784 2041 2.554893 CGGCAACCCTTAAAAACAGCTA 59.445 45.455 0.00 0.00 0.00 3.32
1785 2042 1.339929 CGGCAACCCTTAAAAACAGCT 59.660 47.619 0.00 0.00 0.00 4.24
1786 2043 1.778334 CGGCAACCCTTAAAAACAGC 58.222 50.000 0.00 0.00 0.00 4.40
1787 2044 1.339929 AGCGGCAACCCTTAAAAACAG 59.660 47.619 1.45 0.00 0.00 3.16
1788 2045 1.404843 AGCGGCAACCCTTAAAAACA 58.595 45.000 1.45 0.00 0.00 2.83
1789 2046 3.861276 ATAGCGGCAACCCTTAAAAAC 57.139 42.857 1.45 0.00 0.00 2.43
1790 2047 4.202070 GCATATAGCGGCAACCCTTAAAAA 60.202 41.667 1.45 0.00 0.00 1.94
1791 2048 3.316868 GCATATAGCGGCAACCCTTAAAA 59.683 43.478 1.45 0.00 0.00 1.52
1792 2049 2.882137 GCATATAGCGGCAACCCTTAAA 59.118 45.455 1.45 0.00 0.00 1.52
1793 2050 2.500229 GCATATAGCGGCAACCCTTAA 58.500 47.619 1.45 0.00 0.00 1.85
1794 2051 2.178912 GCATATAGCGGCAACCCTTA 57.821 50.000 1.45 0.00 0.00 2.69
1795 2052 3.021451 GCATATAGCGGCAACCCTT 57.979 52.632 1.45 0.00 0.00 3.95
1796 2053 4.800554 GCATATAGCGGCAACCCT 57.199 55.556 1.45 0.00 0.00 4.34
1799 2056 3.825959 GGCTATGGCATATAGCGGCAAC 61.826 54.545 19.65 7.49 45.83 4.17
1800 2057 1.678728 GGCTATGGCATATAGCGGCAA 60.679 52.381 19.65 0.00 45.83 4.52
1801 2058 0.107703 GGCTATGGCATATAGCGGCA 60.108 55.000 19.65 4.00 45.83 5.69
1802 2059 0.815615 GGGCTATGGCATATAGCGGC 60.816 60.000 19.65 11.56 45.83 6.53
1803 2060 0.530650 CGGGCTATGGCATATAGCGG 60.531 60.000 19.65 13.25 45.83 5.52
1804 2061 1.154205 GCGGGCTATGGCATATAGCG 61.154 60.000 19.65 11.80 45.83 4.26
1805 2062 0.179000 AGCGGGCTATGGCATATAGC 59.821 55.000 18.72 18.72 44.56 2.97
1806 2063 4.342862 AATAGCGGGCTATGGCATATAG 57.657 45.455 13.53 0.00 39.03 1.31
1807 2064 4.771114 AAATAGCGGGCTATGGCATATA 57.229 40.909 13.53 0.00 39.03 0.86
1808 2065 3.652057 AAATAGCGGGCTATGGCATAT 57.348 42.857 13.53 0.00 39.03 1.78
1809 2066 4.561500 TTAAATAGCGGGCTATGGCATA 57.438 40.909 13.53 7.06 39.03 3.14
1810 2067 3.433306 TTAAATAGCGGGCTATGGCAT 57.567 42.857 13.53 4.88 39.03 4.40
1811 2068 2.940994 TTAAATAGCGGGCTATGGCA 57.059 45.000 13.53 0.00 39.03 4.92
1812 2069 3.316868 TGTTTTAAATAGCGGGCTATGGC 59.683 43.478 13.53 0.00 39.03 4.40
1813 2070 4.578928 ACTGTTTTAAATAGCGGGCTATGG 59.421 41.667 13.53 1.52 39.03 2.74
1814 2071 5.751243 ACTGTTTTAAATAGCGGGCTATG 57.249 39.130 13.53 2.13 39.03 2.23
1815 2072 7.868906 TTAACTGTTTTAAATAGCGGGCTAT 57.131 32.000 7.36 7.36 40.63 2.97
1816 2073 7.868906 ATTAACTGTTTTAAATAGCGGGCTA 57.131 32.000 2.42 2.42 0.00 3.93
1817 2074 6.769134 ATTAACTGTTTTAAATAGCGGGCT 57.231 33.333 0.00 0.00 0.00 5.19
1818 2075 7.114388 GCATATTAACTGTTTTAAATAGCGGGC 59.886 37.037 0.00 0.00 0.00 6.13
1819 2076 8.132362 TGCATATTAACTGTTTTAAATAGCGGG 58.868 33.333 0.00 0.00 0.00 6.13
1820 2077 9.677567 ATGCATATTAACTGTTTTAAATAGCGG 57.322 29.630 0.00 0.00 0.00 5.52
1831 2088 9.586732 ACCCAACATATATGCATATTAACTGTT 57.413 29.630 23.71 21.29 0.00 3.16
1832 2089 9.231297 GACCCAACATATATGCATATTAACTGT 57.769 33.333 23.71 17.59 0.00 3.55
1833 2090 9.230122 TGACCCAACATATATGCATATTAACTG 57.770 33.333 23.71 17.05 0.00 3.16
1834 2091 9.979897 ATGACCCAACATATATGCATATTAACT 57.020 29.630 23.71 3.24 0.00 2.24
1838 2095 9.311676 TGAAATGACCCAACATATATGCATATT 57.688 29.630 23.71 9.58 0.00 1.28
1839 2096 8.882557 TGAAATGACCCAACATATATGCATAT 57.117 30.769 22.31 22.31 0.00 1.78
1840 2097 8.882557 ATGAAATGACCCAACATATATGCATA 57.117 30.769 12.79 9.27 0.00 3.14
1841 2098 7.786046 ATGAAATGACCCAACATATATGCAT 57.214 32.000 12.79 3.79 0.00 3.96
1842 2099 7.506599 AGAATGAAATGACCCAACATATATGCA 59.493 33.333 12.79 2.02 0.00 3.96
1843 2100 7.889469 AGAATGAAATGACCCAACATATATGC 58.111 34.615 12.79 0.00 0.00 3.14
1848 2105 9.699410 AGAATAAGAATGAAATGACCCAACATA 57.301 29.630 0.00 0.00 0.00 2.29
1849 2106 8.599624 AGAATAAGAATGAAATGACCCAACAT 57.400 30.769 0.00 0.00 0.00 2.71
1850 2107 7.122650 GGAGAATAAGAATGAAATGACCCAACA 59.877 37.037 0.00 0.00 0.00 3.33
1851 2108 7.122650 TGGAGAATAAGAATGAAATGACCCAAC 59.877 37.037 0.00 0.00 0.00 3.77
1852 2109 7.181361 TGGAGAATAAGAATGAAATGACCCAA 58.819 34.615 0.00 0.00 0.00 4.12
1853 2110 6.730447 TGGAGAATAAGAATGAAATGACCCA 58.270 36.000 0.00 0.00 0.00 4.51
1854 2111 6.830838 ACTGGAGAATAAGAATGAAATGACCC 59.169 38.462 0.00 0.00 0.00 4.46
1855 2112 7.872113 ACTGGAGAATAAGAATGAAATGACC 57.128 36.000 0.00 0.00 0.00 4.02
1871 2128 9.935241 GAGAATGCATATTTAGATACTGGAGAA 57.065 33.333 0.00 0.00 0.00 2.87
1872 2129 9.093458 TGAGAATGCATATTTAGATACTGGAGA 57.907 33.333 0.00 0.00 0.00 3.71
1873 2130 9.887629 ATGAGAATGCATATTTAGATACTGGAG 57.112 33.333 0.00 0.00 0.00 3.86
1917 2174 9.408648 CCTTGGTATAGAAAAACATCCTGTAAT 57.591 33.333 0.00 0.00 0.00 1.89
1918 2175 8.387813 ACCTTGGTATAGAAAAACATCCTGTAA 58.612 33.333 0.00 0.00 0.00 2.41
1919 2176 7.924541 ACCTTGGTATAGAAAAACATCCTGTA 58.075 34.615 0.00 0.00 0.00 2.74
1920 2177 6.790319 ACCTTGGTATAGAAAAACATCCTGT 58.210 36.000 0.00 0.00 0.00 4.00
1921 2178 7.176690 ACAACCTTGGTATAGAAAAACATCCTG 59.823 37.037 0.00 0.00 0.00 3.86
1922 2179 7.176690 CACAACCTTGGTATAGAAAAACATCCT 59.823 37.037 0.00 0.00 0.00 3.24
1923 2180 7.312899 CACAACCTTGGTATAGAAAAACATCC 58.687 38.462 0.00 0.00 0.00 3.51
1924 2181 7.312899 CCACAACCTTGGTATAGAAAAACATC 58.687 38.462 0.00 0.00 0.00 3.06
1925 2182 7.227049 CCACAACCTTGGTATAGAAAAACAT 57.773 36.000 0.00 0.00 0.00 2.71
1926 2183 6.642707 CCACAACCTTGGTATAGAAAAACA 57.357 37.500 0.00 0.00 0.00 2.83
1938 2195 5.556915 TCTAGACATTTACCACAACCTTGG 58.443 41.667 0.00 0.00 43.04 3.61
1939 2196 7.687941 AATCTAGACATTTACCACAACCTTG 57.312 36.000 0.00 0.00 0.00 3.61
1940 2197 9.449719 CTAAATCTAGACATTTACCACAACCTT 57.550 33.333 0.00 0.00 0.00 3.50
1941 2198 8.047310 CCTAAATCTAGACATTTACCACAACCT 58.953 37.037 0.00 0.00 0.00 3.50
1942 2199 8.044908 TCCTAAATCTAGACATTTACCACAACC 58.955 37.037 0.00 0.00 0.00 3.77
1943 2200 9.444600 TTCCTAAATCTAGACATTTACCACAAC 57.555 33.333 0.00 0.00 0.00 3.32
1944 2201 9.667107 CTTCCTAAATCTAGACATTTACCACAA 57.333 33.333 0.00 0.00 0.00 3.33
1945 2202 8.822805 ACTTCCTAAATCTAGACATTTACCACA 58.177 33.333 0.00 0.00 0.00 4.17
1946 2203 9.099454 CACTTCCTAAATCTAGACATTTACCAC 57.901 37.037 0.00 0.00 0.00 4.16
1947 2204 8.822805 ACACTTCCTAAATCTAGACATTTACCA 58.177 33.333 0.00 0.00 0.00 3.25
1951 2208 9.268282 TCCTACACTTCCTAAATCTAGACATTT 57.732 33.333 0.00 0.00 0.00 2.32
1952 2209 8.840200 TCCTACACTTCCTAAATCTAGACATT 57.160 34.615 0.00 0.00 0.00 2.71
1953 2210 8.840200 TTCCTACACTTCCTAAATCTAGACAT 57.160 34.615 0.00 0.00 0.00 3.06
1954 2211 8.840200 ATTCCTACACTTCCTAAATCTAGACA 57.160 34.615 0.00 0.00 0.00 3.41
1955 2212 8.915036 TGATTCCTACACTTCCTAAATCTAGAC 58.085 37.037 0.00 0.00 0.00 2.59
1956 2213 9.488762 TTGATTCCTACACTTCCTAAATCTAGA 57.511 33.333 0.00 0.00 0.00 2.43
1959 2216 9.401058 CAATTGATTCCTACACTTCCTAAATCT 57.599 33.333 0.00 0.00 0.00 2.40
1960 2217 9.178758 ACAATTGATTCCTACACTTCCTAAATC 57.821 33.333 13.59 0.00 0.00 2.17
1961 2218 9.178758 GACAATTGATTCCTACACTTCCTAAAT 57.821 33.333 13.59 0.00 0.00 1.40
1962 2219 8.383175 AGACAATTGATTCCTACACTTCCTAAA 58.617 33.333 13.59 0.00 0.00 1.85
1963 2220 7.918076 AGACAATTGATTCCTACACTTCCTAA 58.082 34.615 13.59 0.00 0.00 2.69
1964 2221 7.180229 TGAGACAATTGATTCCTACACTTCCTA 59.820 37.037 13.59 0.00 0.00 2.94
1965 2222 6.013379 TGAGACAATTGATTCCTACACTTCCT 60.013 38.462 13.59 0.00 0.00 3.36
1966 2223 6.173339 TGAGACAATTGATTCCTACACTTCC 58.827 40.000 13.59 0.00 0.00 3.46
1967 2224 7.856145 ATGAGACAATTGATTCCTACACTTC 57.144 36.000 13.59 0.00 0.00 3.01
1968 2225 8.105829 AGAATGAGACAATTGATTCCTACACTT 58.894 33.333 13.59 0.00 0.00 3.16
1969 2226 7.628234 AGAATGAGACAATTGATTCCTACACT 58.372 34.615 13.59 0.00 0.00 3.55
1970 2227 7.856145 AGAATGAGACAATTGATTCCTACAC 57.144 36.000 13.59 0.00 0.00 2.90
1971 2228 8.324306 AGAAGAATGAGACAATTGATTCCTACA 58.676 33.333 13.59 2.17 0.00 2.74
1972 2229 8.610896 CAGAAGAATGAGACAATTGATTCCTAC 58.389 37.037 13.59 5.58 0.00 3.18
1973 2230 8.542926 TCAGAAGAATGAGACAATTGATTCCTA 58.457 33.333 13.59 0.00 0.00 2.94
1974 2231 7.400439 TCAGAAGAATGAGACAATTGATTCCT 58.600 34.615 13.59 0.50 0.00 3.36
1975 2232 7.621428 TCAGAAGAATGAGACAATTGATTCC 57.379 36.000 13.59 0.00 0.00 3.01
1976 2233 9.719279 GAATCAGAAGAATGAGACAATTGATTC 57.281 33.333 13.59 10.61 40.27 2.52
1977 2234 9.463902 AGAATCAGAAGAATGAGACAATTGATT 57.536 29.630 13.59 0.70 35.97 2.57
1978 2235 9.111613 GAGAATCAGAAGAATGAGACAATTGAT 57.888 33.333 13.59 0.00 31.44 2.57
1979 2236 7.551974 GGAGAATCAGAAGAATGAGACAATTGA 59.448 37.037 13.59 0.00 36.25 2.57
1980 2237 7.336176 TGGAGAATCAGAAGAATGAGACAATTG 59.664 37.037 3.24 3.24 36.25 2.32
1981 2238 7.400439 TGGAGAATCAGAAGAATGAGACAATT 58.600 34.615 0.00 0.00 36.25 2.32
1982 2239 6.955364 TGGAGAATCAGAAGAATGAGACAAT 58.045 36.000 0.00 0.00 36.25 2.71
1983 2240 6.364568 TGGAGAATCAGAAGAATGAGACAA 57.635 37.500 0.00 0.00 36.25 3.18
1984 2241 6.556974 ATGGAGAATCAGAAGAATGAGACA 57.443 37.500 0.00 0.00 36.25 3.41
1985 2242 9.206870 GATAATGGAGAATCAGAAGAATGAGAC 57.793 37.037 0.00 0.00 36.25 3.36
1986 2243 9.156940 AGATAATGGAGAATCAGAAGAATGAGA 57.843 33.333 0.00 0.00 36.25 3.27
2136 2436 8.376270 AGGTTTGTAACATAGAAACTCTTAGCT 58.624 33.333 9.19 0.00 40.55 3.32
2255 2558 7.790861 ACTATAAAATTTGAAAACGCCTTCG 57.209 32.000 0.00 0.00 42.43 3.79
2276 2588 8.347035 GCCAACTCTGTTTTATACAAACAACTA 58.653 33.333 11.66 4.01 39.36 2.24
2277 2589 7.068226 AGCCAACTCTGTTTTATACAAACAACT 59.932 33.333 11.66 0.00 39.36 3.16
2278 2590 7.200455 AGCCAACTCTGTTTTATACAAACAAC 58.800 34.615 11.66 0.00 39.36 3.32
2280 2592 6.952773 AGCCAACTCTGTTTTATACAAACA 57.047 33.333 10.66 10.66 36.02 2.83
2281 2593 8.565416 ACTTAGCCAACTCTGTTTTATACAAAC 58.435 33.333 0.00 0.00 36.02 2.93
2282 2594 8.564574 CACTTAGCCAACTCTGTTTTATACAAA 58.435 33.333 0.00 0.00 36.02 2.83
2283 2595 7.717875 ACACTTAGCCAACTCTGTTTTATACAA 59.282 33.333 0.00 0.00 36.02 2.41
2284 2596 7.221450 ACACTTAGCCAACTCTGTTTTATACA 58.779 34.615 0.00 0.00 34.95 2.29
2285 2597 7.668525 ACACTTAGCCAACTCTGTTTTATAC 57.331 36.000 0.00 0.00 0.00 1.47
2286 2598 8.685838 AAACACTTAGCCAACTCTGTTTTATA 57.314 30.769 0.00 0.00 30.00 0.98
2287 2599 7.502561 AGAAACACTTAGCCAACTCTGTTTTAT 59.497 33.333 0.00 0.00 32.44 1.40
2288 2600 6.826741 AGAAACACTTAGCCAACTCTGTTTTA 59.173 34.615 0.00 0.00 32.44 1.52
2289 2601 5.652452 AGAAACACTTAGCCAACTCTGTTTT 59.348 36.000 0.00 0.00 32.44 2.43
2290 2602 5.193679 AGAAACACTTAGCCAACTCTGTTT 58.806 37.500 0.00 0.00 33.83 2.83
2291 2603 4.781934 AGAAACACTTAGCCAACTCTGTT 58.218 39.130 0.00 0.00 0.00 3.16
2292 2604 4.423625 AGAAACACTTAGCCAACTCTGT 57.576 40.909 0.00 0.00 0.00 3.41
2293 2605 5.934625 ACATAGAAACACTTAGCCAACTCTG 59.065 40.000 0.00 0.00 0.00 3.35
2294 2606 6.115448 ACATAGAAACACTTAGCCAACTCT 57.885 37.500 0.00 0.00 0.00 3.24
2295 2607 6.803154 AACATAGAAACACTTAGCCAACTC 57.197 37.500 0.00 0.00 0.00 3.01
2421 2733 2.742428 AGGCACCTGCATCACAATAT 57.258 45.000 0.00 0.00 44.36 1.28
2428 2740 3.760580 ATAAGTCTAGGCACCTGCATC 57.239 47.619 0.00 0.00 44.36 3.91
2515 2827 2.608998 GGCAAGCTTCTCTTCCAAAAGC 60.609 50.000 0.00 0.00 44.48 3.51
2617 2929 3.002965 CGACCAAAGTTTTCACTACACCC 59.997 47.826 0.00 0.00 30.68 4.61
2659 3164 4.519350 CCAACACTCGATCCTGCTACTATA 59.481 45.833 0.00 0.00 0.00 1.31
2665 3170 0.687354 AACCAACACTCGATCCTGCT 59.313 50.000 0.00 0.00 0.00 4.24
2707 3212 3.530910 CTCAGGCCACGTTCGGGTT 62.531 63.158 5.01 0.00 0.00 4.11
2716 3221 0.540923 AGCTCTCAATCTCAGGCCAC 59.459 55.000 5.01 0.00 0.00 5.01
3118 3624 1.034292 GCTTTGATGCTCCAGGACCC 61.034 60.000 0.00 0.00 0.00 4.46
3208 3714 4.261578 AGTTTGGCTCACAATGAAATGG 57.738 40.909 0.00 0.00 39.21 3.16
3235 3741 2.042297 TCTGAGGAGTGGAGAGATGTGT 59.958 50.000 0.00 0.00 0.00 3.72
3254 3760 3.068024 GCTCTGACGATCTCCTTCATTCT 59.932 47.826 0.00 0.00 0.00 2.40
3352 3882 2.746362 CAAAAAGAGCTACAGGCCTGAG 59.254 50.000 39.19 28.70 43.05 3.35
3353 3883 2.783135 CAAAAAGAGCTACAGGCCTGA 58.217 47.619 39.19 20.75 43.05 3.86
3358 3888 5.689383 TTACTTGCAAAAAGAGCTACAGG 57.311 39.130 0.00 0.00 0.00 4.00
3361 3891 8.512138 TCCTAAATTACTTGCAAAAAGAGCTAC 58.488 33.333 0.00 0.00 0.00 3.58
3386 3916 5.741388 ATTCAACGAGCAGGATAACAATC 57.259 39.130 0.00 0.00 0.00 2.67
3393 3923 5.127194 TGAACTACTATTCAACGAGCAGGAT 59.873 40.000 0.00 0.00 35.65 3.24
3402 3932 8.616076 CAGGGAAATGATGAACTACTATTCAAC 58.384 37.037 0.00 0.00 41.78 3.18
3410 3940 4.009675 TGTGCAGGGAAATGATGAACTAC 58.990 43.478 0.00 0.00 0.00 2.73
3451 3981 1.133253 CGCAGCAACACATCGGAAG 59.867 57.895 0.00 0.00 0.00 3.46
3469 3999 4.542662 CTGGTAGACAGTTATGCATTGC 57.457 45.455 3.54 0.46 42.42 3.56
3488 4018 7.866898 GCTACCAGATAGTGCATATGATATCTG 59.133 40.741 26.75 26.75 45.81 2.90
3490 4020 7.651304 GTGCTACCAGATAGTGCATATGATATC 59.349 40.741 6.97 10.26 36.04 1.63
3495 4025 4.928020 CAGTGCTACCAGATAGTGCATATG 59.072 45.833 0.00 0.00 36.04 1.78
3496 4026 4.835056 TCAGTGCTACCAGATAGTGCATAT 59.165 41.667 0.00 0.00 36.04 1.78
3497 4027 4.215109 TCAGTGCTACCAGATAGTGCATA 58.785 43.478 0.00 0.00 36.04 3.14
3498 4028 3.033909 TCAGTGCTACCAGATAGTGCAT 58.966 45.455 0.00 0.00 36.04 3.96
3503 4033 2.224161 GCCCTTCAGTGCTACCAGATAG 60.224 54.545 0.00 0.00 0.00 2.08
3525 4112 2.686816 GCAACCCGTCCAACGATGG 61.687 63.158 5.13 5.13 46.05 3.51
3526 4113 1.671054 AGCAACCCGTCCAACGATG 60.671 57.895 0.24 0.00 46.05 3.84
3532 4119 3.637911 ATAATAACAGCAACCCGTCCA 57.362 42.857 0.00 0.00 0.00 4.02
3557 4144 4.873746 ACATTATGTAGATGTCCTCCCG 57.126 45.455 0.00 0.00 32.48 5.14
3571 4158 9.874215 CAGATGTATTTGCTACAGAACATTATG 57.126 33.333 0.00 0.00 43.44 1.90
3573 4160 7.552330 TGCAGATGTATTTGCTACAGAACATTA 59.448 33.333 8.56 0.00 43.44 1.90
3601 4188 9.868277 TGTTCTTTTCTTTCTTCTTGCAAATAA 57.132 25.926 0.00 0.00 0.00 1.40
3605 4192 6.071391 AGGTGTTCTTTTCTTTCTTCTTGCAA 60.071 34.615 0.00 0.00 0.00 4.08
3606 4193 5.418840 AGGTGTTCTTTTCTTTCTTCTTGCA 59.581 36.000 0.00 0.00 0.00 4.08
3607 4194 5.745769 CAGGTGTTCTTTTCTTTCTTCTTGC 59.254 40.000 0.00 0.00 0.00 4.01
3608 4195 5.745769 GCAGGTGTTCTTTTCTTTCTTCTTG 59.254 40.000 0.00 0.00 0.00 3.02
3609 4196 5.449177 CGCAGGTGTTCTTTTCTTTCTTCTT 60.449 40.000 0.00 0.00 0.00 2.52
3610 4197 4.035675 CGCAGGTGTTCTTTTCTTTCTTCT 59.964 41.667 0.00 0.00 0.00 2.85
3611 4198 4.282873 CGCAGGTGTTCTTTTCTTTCTTC 58.717 43.478 0.00 0.00 0.00 2.87
3612 4199 3.489229 GCGCAGGTGTTCTTTTCTTTCTT 60.489 43.478 0.30 0.00 0.00 2.52
3613 4200 2.033424 GCGCAGGTGTTCTTTTCTTTCT 59.967 45.455 0.30 0.00 0.00 2.52
3614 4201 2.385315 GCGCAGGTGTTCTTTTCTTTC 58.615 47.619 0.30 0.00 0.00 2.62
3615 4202 1.067060 GGCGCAGGTGTTCTTTTCTTT 59.933 47.619 10.83 0.00 0.00 2.52
3616 4203 0.668535 GGCGCAGGTGTTCTTTTCTT 59.331 50.000 10.83 0.00 0.00 2.52
3617 4204 0.179018 AGGCGCAGGTGTTCTTTTCT 60.179 50.000 10.83 0.00 0.00 2.52
3618 4205 1.519408 TAGGCGCAGGTGTTCTTTTC 58.481 50.000 10.83 0.00 0.00 2.29
3619 4206 2.200373 ATAGGCGCAGGTGTTCTTTT 57.800 45.000 10.83 0.00 0.00 2.27
3620 4207 2.200373 AATAGGCGCAGGTGTTCTTT 57.800 45.000 10.83 0.00 0.00 2.52
3621 4208 2.200373 AAATAGGCGCAGGTGTTCTT 57.800 45.000 10.83 0.00 0.00 2.52
3622 4209 2.200373 AAAATAGGCGCAGGTGTTCT 57.800 45.000 10.83 0.00 0.00 3.01
3623 4210 3.877508 AGATAAAATAGGCGCAGGTGTTC 59.122 43.478 10.83 0.00 0.00 3.18
3624 4211 3.886123 AGATAAAATAGGCGCAGGTGTT 58.114 40.909 10.83 0.00 0.00 3.32
3625 4212 3.560636 AGATAAAATAGGCGCAGGTGT 57.439 42.857 10.83 0.00 0.00 4.16
3626 4213 4.814234 TGTTAGATAAAATAGGCGCAGGTG 59.186 41.667 10.83 0.00 0.00 4.00
3627 4214 5.031066 TGTTAGATAAAATAGGCGCAGGT 57.969 39.130 10.83 0.00 0.00 4.00
3628 4215 5.527582 AGTTGTTAGATAAAATAGGCGCAGG 59.472 40.000 10.83 0.00 0.00 4.85
3629 4216 6.604735 AGTTGTTAGATAAAATAGGCGCAG 57.395 37.500 10.83 0.00 0.00 5.18
3630 4217 6.995511 AAGTTGTTAGATAAAATAGGCGCA 57.004 33.333 10.83 0.00 0.00 6.09
3631 4218 7.248437 ACAAAGTTGTTAGATAAAATAGGCGC 58.752 34.615 0.00 0.00 38.47 6.53
3699 4287 5.183713 CAGGTATGAACTGCAATTTGGAAGA 59.816 40.000 0.00 0.00 0.00 2.87
3710 4298 3.855689 AATGCAACAGGTATGAACTGC 57.144 42.857 0.00 0.00 39.55 4.40
3713 4301 4.096382 CCTGGTAATGCAACAGGTATGAAC 59.904 45.833 17.18 0.00 45.21 3.18
3749 4337 6.015027 AGACGAGCGAGCTATACAAATTAT 57.985 37.500 0.00 0.00 0.00 1.28
3830 4418 2.736670 ACAACTTTGCAAGTCCTCCT 57.263 45.000 0.00 0.00 41.91 3.69
4221 4814 2.364972 ACCCTCCTTGGTGTTTTGAG 57.635 50.000 0.00 0.00 37.20 3.02
4241 4834 0.822121 TGATGCAGCTCCATGATGGC 60.822 55.000 6.59 0.00 37.47 4.40
4262 4855 2.621055 AGATCCTGACGAATTCTCTCGG 59.379 50.000 3.52 3.21 43.22 4.63
4355 4948 1.059692 CGAACATGATGAGACGTGTGC 59.940 52.381 0.00 0.00 39.51 4.57
4356 4949 2.328473 ACGAACATGATGAGACGTGTG 58.672 47.619 0.00 0.00 39.51 3.82
4357 4950 2.030274 TGACGAACATGATGAGACGTGT 60.030 45.455 16.58 0.00 41.03 4.49
4388 4981 4.111198 CTGATTCACTCTCACTTCCATCG 58.889 47.826 0.00 0.00 0.00 3.84
4578 5171 3.940335 TGGTTGGATATGGATCTCTGGA 58.060 45.455 0.00 0.00 32.15 3.86
4580 5173 8.874744 AAATATTGGTTGGATATGGATCTCTG 57.125 34.615 0.00 0.00 32.15 3.35
4601 5194 3.178046 TGGTGTGGTAGCTCTGGAAATA 58.822 45.455 0.00 0.00 0.00 1.40
4646 5239 2.165845 GCATGGCTCTGCTTCAGAAATT 59.834 45.455 0.00 0.00 40.18 1.82
4647 5240 1.749634 GCATGGCTCTGCTTCAGAAAT 59.250 47.619 0.00 0.00 40.18 2.17
4656 5249 1.473677 TGTGTTATTGCATGGCTCTGC 59.526 47.619 5.79 5.79 42.62 4.26
4662 5255 4.850859 CAATGCTTGTGTTATTGCATGG 57.149 40.909 0.00 0.00 44.15 3.66
4670 5263 1.265635 GACACGGCAATGCTTGTGTTA 59.734 47.619 27.35 0.00 43.57 2.41
4673 5269 0.386352 CAGACACGGCAATGCTTGTG 60.386 55.000 22.46 22.46 39.41 3.33
4685 5287 2.414481 CAGCAAATCTCCTTCAGACACG 59.586 50.000 0.00 0.00 32.26 4.49
4760 5362 0.583438 CGTTATGCCGAGCAATCAGG 59.417 55.000 2.68 0.00 43.62 3.86
4844 6783 1.986757 AGCTGAGATGGCGTCACCT 60.987 57.895 9.78 0.00 40.22 4.00
4964 6903 1.409064 TCTAGCCTACCATCTGCGTTG 59.591 52.381 0.00 0.00 0.00 4.10
5264 7256 3.246226 CCAGAGCTGTTATAATGCGTGTC 59.754 47.826 0.00 2.26 0.00 3.67
5269 7261 4.457257 GGATTCCCAGAGCTGTTATAATGC 59.543 45.833 0.00 5.59 0.00 3.56
5287 7279 7.094634 ACTGAATGTGTGTACAGAAATGGATTC 60.095 37.037 0.00 0.19 40.79 2.52
5306 7298 7.406799 TGTGCGTGTATATGATAACTGAATG 57.593 36.000 0.00 0.00 0.00 2.67
5373 7366 5.126869 TGAGCTTCAACATTTGAGTTGGAAA 59.873 36.000 6.95 0.00 46.74 3.13
5481 7475 2.348411 ACTCTGTTGAACCTGTTGGG 57.652 50.000 0.00 0.00 41.89 4.12
5483 7477 7.905604 TGATATTACTCTGTTGAACCTGTTG 57.094 36.000 0.00 0.00 0.00 3.33
5695 7690 2.202892 GACGGCGGATTCACCTCC 60.203 66.667 13.24 0.00 39.96 4.30
5698 7693 2.884207 GTCGACGGCGGATTCACC 60.884 66.667 12.58 0.00 38.28 4.02
5701 7696 2.884207 GTGGTCGACGGCGGATTC 60.884 66.667 12.58 0.00 38.28 2.52
5746 7741 3.456431 CTACCTGGCGAGCGACGAG 62.456 68.421 0.00 0.40 45.77 4.18
5863 7866 2.648059 CATTTACCCCAAGGAGAGCAG 58.352 52.381 0.00 0.00 36.73 4.24
5869 7872 1.379309 GCCGCATTTACCCCAAGGA 60.379 57.895 0.00 0.00 36.73 3.36
5872 7875 1.326213 CCATGCCGCATTTACCCCAA 61.326 55.000 2.16 0.00 0.00 4.12
5878 7881 1.159713 CGCTCTCCATGCCGCATTTA 61.160 55.000 2.16 0.00 0.00 1.40
5914 7917 2.668550 GTGAACTGCGTGTCCCCC 60.669 66.667 0.00 0.00 0.00 5.40
5917 7920 2.424705 TACGGGTGAACTGCGTGTCC 62.425 60.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.