Multiple sequence alignment - TraesCS5B01G476200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G476200 chr5B 100.000 3070 0 0 1 3070 648616784 648613715 0.000000e+00 5670.0
1 TraesCS5B01G476200 chr5B 86.038 1719 105 42 765 2415 648280134 648281785 0.000000e+00 1720.0
2 TraesCS5B01G476200 chr5B 89.810 579 36 6 768 1336 648331570 648332135 0.000000e+00 721.0
3 TraesCS5B01G476200 chr5A 87.828 1717 116 28 762 2415 643917363 643919049 0.000000e+00 1927.0
4 TraesCS5B01G476200 chr5A 82.661 248 40 3 2415 2659 603796284 603796531 1.850000e-52 217.0
5 TraesCS5B01G476200 chr5D 87.260 1664 137 26 801 2412 515667393 515669033 0.000000e+00 1829.0
6 TraesCS5B01G476200 chr5D 79.371 572 95 17 20 580 409290942 409291501 6.210000e-102 381.0
7 TraesCS5B01G476200 chr5D 78.302 424 77 11 71 480 395773153 395773575 3.040000e-65 259.0
8 TraesCS5B01G476200 chr5D 81.349 252 42 5 2415 2662 330570871 330570621 1.870000e-47 200.0
9 TraesCS5B01G476200 chr4B 81.678 715 84 22 20 700 601726102 601726803 4.470000e-153 551.0
10 TraesCS5B01G476200 chr6D 82.074 675 83 22 2416 3070 86767375 86768031 2.690000e-150 542.0
11 TraesCS5B01G476200 chr4A 80.811 740 90 27 8 703 717419236 717419967 1.620000e-147 532.0
12 TraesCS5B01G476200 chr4A 78.907 659 98 18 2415 3063 545111056 545110429 2.850000e-110 409.0
13 TraesCS5B01G476200 chr4A 85.714 203 26 3 2406 2606 620981437 620981638 8.620000e-51 211.0
14 TraesCS5B01G476200 chr4A 81.275 251 44 3 2416 2663 503479114 503479364 1.870000e-47 200.0
15 TraesCS5B01G476200 chr7B 84.440 482 62 7 88 563 436791290 436790816 2.160000e-126 462.0
16 TraesCS5B01G476200 chr7B 79.829 585 95 11 43 613 682027926 682027351 3.690000e-109 405.0
17 TraesCS5B01G476200 chr2B 80.822 584 87 21 12 577 751312603 751312027 4.700000e-118 435.0
18 TraesCS5B01G476200 chr2B 83.482 224 33 4 2412 2631 195852596 195852373 4.010000e-49 206.0
19 TraesCS5B01G476200 chr1B 80.000 605 83 17 8 586 661979755 661980347 2.200000e-111 412.0
20 TraesCS5B01G476200 chr2A 82.932 457 69 7 27 478 746681431 746680979 1.330000e-108 403.0
21 TraesCS5B01G476200 chr1A 80.247 486 90 6 27 509 514220201 514219719 8.090000e-96 361.0
22 TraesCS5B01G476200 chr1A 78.024 496 90 14 54 535 24432800 24433290 8.320000e-76 294.0
23 TraesCS5B01G476200 chr1D 78.068 497 84 21 70 545 130296046 130295554 1.080000e-74 291.0
24 TraesCS5B01G476200 chr1D 100.000 31 0 0 3040 3070 323919554 323919584 1.190000e-04 58.4
25 TraesCS5B01G476200 chr3D 86.531 245 32 1 40 284 574182025 574181782 5.050000e-68 268.0
26 TraesCS5B01G476200 chr3D 79.705 271 45 9 2414 2679 385154543 385154808 1.450000e-43 187.0
27 TraesCS5B01G476200 chr3D 100.000 29 0 0 3038 3066 61935746 61935774 2.000000e-03 54.7
28 TraesCS5B01G476200 chr6A 87.047 193 24 1 2415 2606 583283360 583283552 1.850000e-52 217.0
29 TraesCS5B01G476200 chr3A 82.533 229 37 3 2416 2641 727291355 727291583 6.710000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G476200 chr5B 648613715 648616784 3069 True 5670 5670 100.000 1 3070 1 chr5B.!!$R1 3069
1 TraesCS5B01G476200 chr5B 648280134 648281785 1651 False 1720 1720 86.038 765 2415 1 chr5B.!!$F1 1650
2 TraesCS5B01G476200 chr5B 648331570 648332135 565 False 721 721 89.810 768 1336 1 chr5B.!!$F2 568
3 TraesCS5B01G476200 chr5A 643917363 643919049 1686 False 1927 1927 87.828 762 2415 1 chr5A.!!$F2 1653
4 TraesCS5B01G476200 chr5D 515667393 515669033 1640 False 1829 1829 87.260 801 2412 1 chr5D.!!$F3 1611
5 TraesCS5B01G476200 chr5D 409290942 409291501 559 False 381 381 79.371 20 580 1 chr5D.!!$F2 560
6 TraesCS5B01G476200 chr4B 601726102 601726803 701 False 551 551 81.678 20 700 1 chr4B.!!$F1 680
7 TraesCS5B01G476200 chr6D 86767375 86768031 656 False 542 542 82.074 2416 3070 1 chr6D.!!$F1 654
8 TraesCS5B01G476200 chr4A 717419236 717419967 731 False 532 532 80.811 8 703 1 chr4A.!!$F3 695
9 TraesCS5B01G476200 chr4A 545110429 545111056 627 True 409 409 78.907 2415 3063 1 chr4A.!!$R1 648
10 TraesCS5B01G476200 chr7B 682027351 682027926 575 True 405 405 79.829 43 613 1 chr7B.!!$R2 570
11 TraesCS5B01G476200 chr2B 751312027 751312603 576 True 435 435 80.822 12 577 1 chr2B.!!$R2 565
12 TraesCS5B01G476200 chr1B 661979755 661980347 592 False 412 412 80.000 8 586 1 chr1B.!!$F1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
797 864 0.107897 ATACTTGCCGTCGCATTGGA 60.108 50.0 0.0 0.00 46.67 3.53 F
1835 1964 0.179121 TACGTGCCCTGTAATGCTCG 60.179 55.0 0.0 4.66 46.43 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 2027 0.462047 CGATTCTCCTGAAACCCCGG 60.462 60.000 0.00 0.00 35.63 5.73 R
2879 3039 2.294791 CCCATACTGTTTGGCGAACAAA 59.705 45.455 20.24 12.26 46.99 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.393557 CAGTGTGCTGTTGTCGGTT 58.606 52.632 0.00 0.00 37.92 4.44
21 22 1.260561 CAGTGTGCTGTTGTCGGTTAC 59.739 52.381 0.00 0.00 37.92 2.50
36 40 1.609580 GGTTACAATGGACGACTGCCA 60.610 52.381 0.00 0.00 40.24 4.92
38 42 0.973632 TACAATGGACGACTGCCAGT 59.026 50.000 0.00 0.00 39.11 4.00
112 116 5.163530 TGTTCTTCAAGTGCACAAATGATGT 60.164 36.000 21.04 0.00 45.34 3.06
145 149 3.181485 TGTTTTGATTCGGTTGTTCACCC 60.181 43.478 0.00 0.00 43.83 4.61
146 150 2.350057 TTGATTCGGTTGTTCACCCA 57.650 45.000 0.00 0.00 43.83 4.51
150 154 3.639094 TGATTCGGTTGTTCACCCAATTT 59.361 39.130 0.00 0.00 43.83 1.82
185 189 5.528690 TGGTAGCTCATTGTTTGCTCATATC 59.471 40.000 0.00 0.00 38.15 1.63
212 219 4.068599 TGTACGATGGATGCAAGTTTTGA 58.931 39.130 4.23 0.00 0.00 2.69
217 224 7.566760 ACGATGGATGCAAGTTTTGATATTA 57.433 32.000 0.00 0.00 0.00 0.98
376 412 2.656651 CGAGAAGCCGCGGATCAG 60.657 66.667 33.48 18.94 31.87 2.90
379 415 3.567797 GAAGCCGCGGATCAGCAC 61.568 66.667 33.48 9.31 36.85 4.40
384 420 1.741401 CCGCGGATCAGCACTGAAA 60.741 57.895 24.07 0.00 43.58 2.69
395 431 6.541641 GGATCAGCACTGAAAACATAGAGAAT 59.458 38.462 4.14 0.00 43.58 2.40
483 520 8.966868 TGGTTCTTGTTTTCTTTGATCTTACTT 58.033 29.630 0.00 0.00 0.00 2.24
536 584 8.144155 TGTACTGTAATGTCGTTGAATGAAAA 57.856 30.769 0.00 0.00 0.00 2.29
537 585 8.779303 TGTACTGTAATGTCGTTGAATGAAAAT 58.221 29.630 0.00 0.00 0.00 1.82
580 629 3.787634 CGGTGATCGAAAATGAAATGCAG 59.212 43.478 0.00 0.00 42.43 4.41
589 638 8.176814 TCGAAAATGAAATGCAGATGAATTTC 57.823 30.769 16.35 16.35 45.87 2.17
591 640 8.108172 CGAAAATGAAATGCAGATGAATTTCTG 58.892 33.333 21.42 6.08 45.86 3.02
601 650 5.563842 CAGATGAATTTCTGTTTACTCCGC 58.436 41.667 0.00 0.00 38.64 5.54
613 662 7.408543 TCTGTTTACTCCGCTATATATAGGGT 58.591 38.462 26.41 15.74 40.52 4.34
614 663 7.338703 TCTGTTTACTCCGCTATATATAGGGTG 59.661 40.741 26.41 21.94 40.52 4.61
615 664 6.379133 TGTTTACTCCGCTATATATAGGGTGG 59.621 42.308 26.41 21.33 40.52 4.61
623 672 2.913603 TATATAGGGTGGCGGCTAGT 57.086 50.000 11.43 0.00 0.00 2.57
624 673 1.267121 ATATAGGGTGGCGGCTAGTG 58.733 55.000 11.43 0.00 0.00 2.74
627 693 2.808761 TAGGGTGGCGGCTAGTGGAA 62.809 60.000 11.43 0.00 0.00 3.53
666 732 9.490083 ACTAATAGTTTACTCCACCAGATACTT 57.510 33.333 0.00 0.00 0.00 2.24
679 746 7.715249 TCCACCAGATACTTCACTATTTATTGC 59.285 37.037 0.00 0.00 0.00 3.56
682 749 6.929049 CCAGATACTTCACTATTTATTGCGGA 59.071 38.462 0.00 0.00 0.00 5.54
683 750 7.604164 CCAGATACTTCACTATTTATTGCGGAT 59.396 37.037 0.00 0.00 0.00 4.18
684 751 9.639601 CAGATACTTCACTATTTATTGCGGATA 57.360 33.333 0.00 0.00 0.00 2.59
703 770 5.568023 CGGATAATCGGTTAGAAATGCCCTA 60.568 44.000 0.00 0.00 0.00 3.53
704 771 6.235664 GGATAATCGGTTAGAAATGCCCTAA 58.764 40.000 0.00 0.00 0.00 2.69
705 772 6.371825 GGATAATCGGTTAGAAATGCCCTAAG 59.628 42.308 0.00 0.00 0.00 2.18
706 773 4.772886 ATCGGTTAGAAATGCCCTAAGT 57.227 40.909 0.00 0.00 0.00 2.24
707 774 5.881923 ATCGGTTAGAAATGCCCTAAGTA 57.118 39.130 0.00 0.00 0.00 2.24
708 775 5.272283 TCGGTTAGAAATGCCCTAAGTAG 57.728 43.478 0.00 0.00 0.00 2.57
709 776 4.713321 TCGGTTAGAAATGCCCTAAGTAGT 59.287 41.667 0.00 0.00 0.00 2.73
710 777 5.893255 TCGGTTAGAAATGCCCTAAGTAGTA 59.107 40.000 0.00 0.00 0.00 1.82
711 778 6.552350 TCGGTTAGAAATGCCCTAAGTAGTAT 59.448 38.462 0.00 0.00 0.00 2.12
712 779 7.725397 TCGGTTAGAAATGCCCTAAGTAGTATA 59.275 37.037 0.00 0.00 0.00 1.47
713 780 8.027771 CGGTTAGAAATGCCCTAAGTAGTATAG 58.972 40.741 0.00 0.00 0.00 1.31
714 781 7.818446 GGTTAGAAATGCCCTAAGTAGTATAGC 59.182 40.741 0.00 0.00 0.00 2.97
715 782 6.361768 AGAAATGCCCTAAGTAGTATAGCC 57.638 41.667 0.00 0.00 0.00 3.93
716 783 5.844516 AGAAATGCCCTAAGTAGTATAGCCA 59.155 40.000 0.00 0.00 0.00 4.75
717 784 6.502158 AGAAATGCCCTAAGTAGTATAGCCAT 59.498 38.462 0.00 0.00 0.00 4.40
718 785 5.941555 ATGCCCTAAGTAGTATAGCCATC 57.058 43.478 0.00 0.00 0.00 3.51
719 786 5.011982 TGCCCTAAGTAGTATAGCCATCT 57.988 43.478 0.00 0.00 0.00 2.90
720 787 5.403512 TGCCCTAAGTAGTATAGCCATCTT 58.596 41.667 0.00 0.00 0.00 2.40
721 788 5.246203 TGCCCTAAGTAGTATAGCCATCTTG 59.754 44.000 0.00 0.00 0.00 3.02
722 789 5.725362 CCCTAAGTAGTATAGCCATCTTGC 58.275 45.833 0.00 0.00 0.00 4.01
723 790 5.482175 CCCTAAGTAGTATAGCCATCTTGCT 59.518 44.000 0.00 0.00 45.38 3.91
724 791 6.393990 CCTAAGTAGTATAGCCATCTTGCTG 58.606 44.000 0.00 0.00 42.77 4.41
725 792 6.209589 CCTAAGTAGTATAGCCATCTTGCTGA 59.790 42.308 0.00 0.00 42.77 4.26
726 793 6.485830 AAGTAGTATAGCCATCTTGCTGAA 57.514 37.500 0.00 0.00 42.77 3.02
727 794 5.848406 AGTAGTATAGCCATCTTGCTGAAC 58.152 41.667 0.00 0.00 42.77 3.18
728 795 4.760530 AGTATAGCCATCTTGCTGAACA 57.239 40.909 0.00 0.00 42.77 3.18
729 796 5.102953 AGTATAGCCATCTTGCTGAACAA 57.897 39.130 0.00 0.00 42.77 2.83
730 797 5.500234 AGTATAGCCATCTTGCTGAACAAA 58.500 37.500 0.00 0.00 42.77 2.83
731 798 4.708726 ATAGCCATCTTGCTGAACAAAC 57.291 40.909 0.00 0.00 42.77 2.93
732 799 2.309613 AGCCATCTTGCTGAACAAACA 58.690 42.857 0.00 0.00 40.90 2.83
733 800 2.694628 AGCCATCTTGCTGAACAAACAA 59.305 40.909 0.00 0.00 40.90 2.83
734 801 3.054878 GCCATCTTGCTGAACAAACAAG 58.945 45.455 9.51 9.51 41.70 3.16
735 802 3.491447 GCCATCTTGCTGAACAAACAAGT 60.491 43.478 13.22 3.64 41.22 3.16
736 803 4.685924 CCATCTTGCTGAACAAACAAGTT 58.314 39.130 13.22 6.25 41.22 2.66
737 804 5.111293 CCATCTTGCTGAACAAACAAGTTT 58.889 37.500 13.22 0.00 41.22 2.66
738 805 5.232838 CCATCTTGCTGAACAAACAAGTTTC 59.767 40.000 13.22 0.00 41.22 2.78
739 806 4.411327 TCTTGCTGAACAAACAAGTTTCG 58.589 39.130 13.22 0.00 41.22 3.46
740 807 3.840890 TGCTGAACAAACAAGTTTCGT 57.159 38.095 0.00 0.00 0.00 3.85
741 808 4.167554 TGCTGAACAAACAAGTTTCGTT 57.832 36.364 10.85 10.85 31.54 3.85
742 809 5.298197 TGCTGAACAAACAAGTTTCGTTA 57.702 34.783 10.96 0.00 30.19 3.18
743 810 5.700846 TGCTGAACAAACAAGTTTCGTTAA 58.299 33.333 10.96 6.02 30.19 2.01
744 811 5.797934 TGCTGAACAAACAAGTTTCGTTAAG 59.202 36.000 14.44 14.44 31.99 1.85
745 812 5.275741 GCTGAACAAACAAGTTTCGTTAAGC 60.276 40.000 21.09 21.09 38.82 3.09
746 813 5.700846 TGAACAAACAAGTTTCGTTAAGCA 58.299 33.333 10.96 5.73 30.19 3.91
747 814 5.797934 TGAACAAACAAGTTTCGTTAAGCAG 59.202 36.000 10.96 0.00 30.19 4.24
748 815 4.102649 ACAAACAAGTTTCGTTAAGCAGC 58.897 39.130 0.00 0.00 0.00 5.25
749 816 2.663279 ACAAGTTTCGTTAAGCAGCG 57.337 45.000 0.00 0.00 0.00 5.18
750 817 1.263217 ACAAGTTTCGTTAAGCAGCGG 59.737 47.619 0.00 0.00 0.00 5.52
751 818 0.872388 AAGTTTCGTTAAGCAGCGGG 59.128 50.000 0.00 0.00 0.00 6.13
752 819 0.953960 AGTTTCGTTAAGCAGCGGGG 60.954 55.000 0.00 0.00 0.00 5.73
753 820 2.329614 TTTCGTTAAGCAGCGGGGC 61.330 57.895 0.00 0.00 0.00 5.80
754 821 3.538785 TTCGTTAAGCAGCGGGGCA 62.539 57.895 1.12 0.00 35.83 5.36
755 822 3.499737 CGTTAAGCAGCGGGGCAG 61.500 66.667 1.12 0.00 35.83 4.85
756 823 2.359975 GTTAAGCAGCGGGGCAGT 60.360 61.111 1.12 0.00 35.83 4.40
757 824 2.359850 TTAAGCAGCGGGGCAGTG 60.360 61.111 1.12 0.00 35.83 3.66
772 839 0.526524 CAGTGCGGACTTCGGAGATC 60.527 60.000 6.93 0.00 40.59 2.75
787 854 3.302480 CGGAGATCGAAAAATACTTGCCG 60.302 47.826 0.00 0.00 42.43 5.69
797 864 0.107897 ATACTTGCCGTCGCATTGGA 60.108 50.000 0.00 0.00 46.67 3.53
798 865 1.017177 TACTTGCCGTCGCATTGGAC 61.017 55.000 0.00 0.00 46.67 4.02
802 878 2.511600 CCGTCGCATTGGACCTCC 60.512 66.667 0.00 0.00 33.30 4.30
932 1009 4.720090 TCTCTAGCTACAAACTCGTTTCG 58.280 43.478 0.00 0.00 0.00 3.46
1258 1335 3.998672 CCCCGTGCCAGTACGTGT 61.999 66.667 0.00 0.00 42.24 4.49
1408 1537 0.324923 ATGAAGTGCATGCCCATGGT 60.325 50.000 16.68 0.00 39.16 3.55
1736 1865 2.284331 TAGGCCGGACCAAGAGCA 60.284 61.111 1.76 0.00 43.14 4.26
1740 1869 2.750350 CCGGACCAAGAGCAACCT 59.250 61.111 0.00 0.00 0.00 3.50
1799 1928 1.682684 GAGGAGGCCGACTGGAAGA 60.683 63.158 6.98 0.00 37.43 2.87
1827 1956 2.964978 GGTACGTACGTGCCCTGT 59.035 61.111 36.53 10.65 43.64 4.00
1834 1963 1.287425 GTACGTGCCCTGTAATGCTC 58.713 55.000 0.00 0.00 0.00 4.26
1835 1964 0.179121 TACGTGCCCTGTAATGCTCG 60.179 55.000 0.00 4.66 46.43 5.03
1839 1968 0.249447 TGCCCTGTAATGCTCGATCG 60.249 55.000 9.36 9.36 0.00 3.69
1840 1969 0.249489 GCCCTGTAATGCTCGATCGT 60.249 55.000 15.94 0.00 0.00 3.73
1842 1971 2.128035 CCCTGTAATGCTCGATCGTTC 58.872 52.381 15.94 8.60 0.00 3.95
1843 1972 2.128035 CCTGTAATGCTCGATCGTTCC 58.872 52.381 15.94 5.31 0.00 3.62
1844 1973 1.781429 CTGTAATGCTCGATCGTTCCG 59.219 52.381 15.94 3.73 0.00 4.30
1847 1976 0.527817 AATGCTCGATCGTTCCGTCC 60.528 55.000 15.94 0.00 0.00 4.79
1848 1977 1.384989 ATGCTCGATCGTTCCGTCCT 61.385 55.000 15.94 0.00 0.00 3.85
1849 1978 1.298488 GCTCGATCGTTCCGTCCTC 60.298 63.158 15.94 0.00 0.00 3.71
1850 1979 1.355916 CTCGATCGTTCCGTCCTCC 59.644 63.158 15.94 0.00 0.00 4.30
1851 1980 1.077930 TCGATCGTTCCGTCCTCCT 60.078 57.895 15.94 0.00 0.00 3.69
1856 1996 0.611062 TCGTTCCGTCCTCCTGATGT 60.611 55.000 0.00 0.00 0.00 3.06
1871 2011 6.384258 TCCTGATGTCTCTTTCTTATCTCG 57.616 41.667 0.00 0.00 0.00 4.04
1876 2016 8.231692 TGATGTCTCTTTCTTATCTCGATCTT 57.768 34.615 0.00 0.00 0.00 2.40
1877 2017 8.349245 TGATGTCTCTTTCTTATCTCGATCTTC 58.651 37.037 0.00 0.00 0.00 2.87
1878 2018 6.720343 TGTCTCTTTCTTATCTCGATCTTCG 58.280 40.000 0.00 0.00 42.10 3.79
1879 2019 6.316640 TGTCTCTTTCTTATCTCGATCTTCGT 59.683 38.462 0.00 0.00 41.35 3.85
1880 2020 7.148222 TGTCTCTTTCTTATCTCGATCTTCGTT 60.148 37.037 0.00 0.00 41.35 3.85
1881 2021 7.698970 GTCTCTTTCTTATCTCGATCTTCGTTT 59.301 37.037 0.00 0.00 41.35 3.60
1882 2022 7.698550 TCTCTTTCTTATCTCGATCTTCGTTTG 59.301 37.037 0.00 0.00 41.35 2.93
1883 2023 6.752351 TCTTTCTTATCTCGATCTTCGTTTGG 59.248 38.462 0.00 0.00 41.35 3.28
1884 2024 5.578005 TCTTATCTCGATCTTCGTTTGGT 57.422 39.130 0.00 0.00 41.35 3.67
1885 2025 5.340803 TCTTATCTCGATCTTCGTTTGGTG 58.659 41.667 0.00 0.00 41.35 4.17
1886 2026 2.363788 TCTCGATCTTCGTTTGGTGG 57.636 50.000 0.00 0.00 41.35 4.61
1887 2027 0.721718 CTCGATCTTCGTTTGGTGGC 59.278 55.000 0.00 0.00 41.35 5.01
1888 2028 0.672401 TCGATCTTCGTTTGGTGGCC 60.672 55.000 0.00 0.00 41.35 5.36
1889 2029 1.794222 GATCTTCGTTTGGTGGCCG 59.206 57.895 0.00 0.00 0.00 6.13
1890 2030 1.644786 GATCTTCGTTTGGTGGCCGG 61.645 60.000 0.00 0.00 0.00 6.13
1891 2031 3.361977 CTTCGTTTGGTGGCCGGG 61.362 66.667 2.18 0.00 0.00 5.73
1906 2046 0.462047 CCGGGGTTTCAGGAGAATCG 60.462 60.000 0.00 0.00 34.37 3.34
1907 2047 0.535335 CGGGGTTTCAGGAGAATCGA 59.465 55.000 0.00 0.00 34.37 3.59
1910 2050 2.159028 GGGGTTTCAGGAGAATCGAGAG 60.159 54.545 0.00 0.00 34.37 3.20
1916 2056 2.786495 GGAGAATCGAGAGGCGGCA 61.786 63.158 13.08 0.00 41.33 5.69
2080 2224 2.016905 AAGCTGTAGACAGACCCACT 57.983 50.000 13.87 0.00 46.59 4.00
2112 2256 4.729227 TCACAGTTCACACTCTGTACAA 57.271 40.909 0.00 0.00 42.05 2.41
2115 2259 5.753438 TCACAGTTCACACTCTGTACAATTC 59.247 40.000 0.00 0.00 42.05 2.17
2143 2287 4.855715 TTGGTTGCGGATTTGAACAATA 57.144 36.364 0.00 0.00 0.00 1.90
2176 2320 6.529084 TGGACATATTTTACCCCAGATGAT 57.471 37.500 0.00 0.00 0.00 2.45
2177 2321 6.921412 TGGACATATTTTACCCCAGATGATT 58.079 36.000 0.00 0.00 0.00 2.57
2178 2322 7.361438 TGGACATATTTTACCCCAGATGATTT 58.639 34.615 0.00 0.00 0.00 2.17
2179 2323 7.843760 TGGACATATTTTACCCCAGATGATTTT 59.156 33.333 0.00 0.00 0.00 1.82
2180 2324 8.704668 GGACATATTTTACCCCAGATGATTTTT 58.295 33.333 0.00 0.00 0.00 1.94
2211 2355 3.325293 AATGTCAGTAGCCAGAGTGTG 57.675 47.619 0.00 0.00 0.00 3.82
2287 2431 9.090692 GTTTAGTTTAAAGGGGAAACAAGTTTC 57.909 33.333 15.46 15.46 46.03 2.78
2312 2460 9.081997 TCATATTCACAAACAACTTCACAAAAC 57.918 29.630 0.00 0.00 0.00 2.43
2376 2526 3.434453 GGATGGTTAATCGGGTGGATGAA 60.434 47.826 0.00 0.00 35.99 2.57
2391 2544 2.893489 GGATGAACCCCCTAAATCATGC 59.107 50.000 0.00 0.00 34.31 4.06
2401 2554 5.163416 CCCCCTAAATCATGCCTTTGTAAAG 60.163 44.000 0.00 0.00 35.79 1.85
2405 2558 6.747280 CCTAAATCATGCCTTTGTAAAGTTCG 59.253 38.462 3.90 0.00 34.20 3.95
2455 2608 4.674623 CGTCTCTCAACTATTGGCGTAGTT 60.675 45.833 8.72 8.72 43.72 2.24
2463 2616 8.556213 TCAACTATTGGCGTAGTTTAGATTTT 57.444 30.769 11.11 0.00 41.65 1.82
2483 2636 5.730296 TTTGTCCTTCAACTTCAAAACCA 57.270 34.783 0.00 0.00 35.61 3.67
2489 2642 5.656416 TCCTTCAACTTCAAAACCAGACAAT 59.344 36.000 0.00 0.00 0.00 2.71
2497 2650 3.450457 TCAAAACCAGACAATTTGCACCT 59.550 39.130 0.00 0.00 34.77 4.00
2498 2651 4.081198 TCAAAACCAGACAATTTGCACCTT 60.081 37.500 0.00 0.00 34.77 3.50
2505 2658 5.215160 CAGACAATTTGCACCTTCAACTAC 58.785 41.667 0.00 0.00 0.00 2.73
2511 2664 5.906113 TTTGCACCTTCAACTACTGAAAA 57.094 34.783 0.00 0.00 43.54 2.29
2586 2739 2.399856 GGTTTTGACCGTGCTGACA 58.600 52.632 0.00 0.00 0.00 3.58
2668 2824 5.054390 TCACATACTTTTTCCAAATCCGC 57.946 39.130 0.00 0.00 0.00 5.54
2771 2931 6.007936 ACATTAGCTTGAAAAATGTACGCA 57.992 33.333 9.54 0.00 40.95 5.24
2772 2932 6.442952 ACATTAGCTTGAAAAATGTACGCAA 58.557 32.000 9.54 0.00 40.95 4.85
2836 2996 8.428186 AATAATTACGTGAACGGTATGTGAAT 57.572 30.769 7.86 0.00 44.95 2.57
2847 3007 7.497579 TGAACGGTATGTGAATAGTATGCAAAT 59.502 33.333 0.00 0.00 0.00 2.32
2900 3060 1.529226 TGTTCGCCAAACAGTATGGG 58.471 50.000 0.00 0.00 42.95 4.00
2903 3063 2.752903 GTTCGCCAAACAGTATGGGAAT 59.247 45.455 0.00 0.00 43.62 3.01
2911 3071 6.484977 GCCAAACAGTATGGGAATTTGAAAAA 59.515 34.615 0.00 0.00 43.62 1.94
2991 3171 7.839680 AAAGTTCAGGGATTTGAAACAGTAT 57.160 32.000 0.00 0.00 38.69 2.12
3005 3185 8.810652 TTGAAACAGTATGCCTATTTGAAAAC 57.189 30.769 0.00 0.00 42.53 2.43
3011 3191 9.019656 ACAGTATGCCTATTTGAAAACATTACA 57.980 29.630 0.00 0.00 42.53 2.41
3036 3219 6.967767 ACGAATTTGAAACAATTACACGTTGA 59.032 30.769 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.134640 TGTAACCGACAACAGCACACT 60.135 47.619 0.00 0.00 34.15 3.55
3 4 1.292061 TGTAACCGACAACAGCACAC 58.708 50.000 0.00 0.00 34.15 3.82
4 5 2.025589 TTGTAACCGACAACAGCACA 57.974 45.000 0.00 0.00 43.30 4.57
19 20 0.973632 ACTGGCAGTCGTCCATTGTA 59.026 50.000 15.88 0.00 32.37 2.41
21 22 1.300971 CCACTGGCAGTCGTCCATTG 61.301 60.000 19.13 3.69 34.99 2.82
49 53 2.012051 GCATGGTAGAAACTCGGGTGG 61.012 57.143 0.00 0.00 0.00 4.61
52 56 0.810031 CGGCATGGTAGAAACTCGGG 60.810 60.000 0.00 0.00 0.00 5.14
86 90 4.157472 TCATTTGTGCACTTGAAGAACACA 59.843 37.500 19.41 16.74 39.35 3.72
112 116 4.380339 CCGAATCAAAACATGCACATACCA 60.380 41.667 0.00 0.00 0.00 3.25
122 126 4.616953 GGTGAACAACCGAATCAAAACAT 58.383 39.130 0.00 0.00 39.81 2.71
145 149 6.364706 TGAGCTACCAAAATTGCGTTAAATTG 59.635 34.615 0.00 0.00 30.21 2.32
146 150 6.451393 TGAGCTACCAAAATTGCGTTAAATT 58.549 32.000 0.00 0.00 0.00 1.82
150 154 5.048364 ACAATGAGCTACCAAAATTGCGTTA 60.048 36.000 0.00 0.00 32.65 3.18
185 189 2.008752 TGCATCCATCGTACACACAG 57.991 50.000 0.00 0.00 0.00 3.66
225 232 9.797642 TTGTGCTATCAATAGATGGATGTATTT 57.202 29.630 1.15 0.00 34.92 1.40
345 378 3.594603 CTTCTCGAGCTTCAACCCTTA 57.405 47.619 7.81 0.00 0.00 2.69
370 406 5.423015 TCTCTATGTTTTCAGTGCTGATCC 58.577 41.667 2.47 0.00 39.64 3.36
475 512 9.561069 ACCAATTATTCGCTATGAAAGTAAGAT 57.439 29.630 0.00 0.00 40.71 2.40
563 612 8.712285 AAATTCATCTGCATTTCATTTTCGAT 57.288 26.923 0.00 0.00 0.00 3.59
564 613 8.030692 AGAAATTCATCTGCATTTCATTTTCGA 58.969 29.630 14.68 0.00 39.18 3.71
580 629 5.803020 AGCGGAGTAAACAGAAATTCATC 57.197 39.130 0.00 0.00 0.00 2.92
589 638 7.416438 CCACCCTATATATAGCGGAGTAAACAG 60.416 44.444 23.51 6.02 0.00 3.16
591 640 6.682362 GCCACCCTATATATAGCGGAGTAAAC 60.682 46.154 23.51 10.25 0.00 2.01
601 650 4.278669 CACTAGCCGCCACCCTATATATAG 59.721 50.000 12.18 12.18 0.00 1.31
613 662 3.290948 AATTTATTCCACTAGCCGCCA 57.709 42.857 0.00 0.00 0.00 5.69
614 663 4.820173 AGTAAATTTATTCCACTAGCCGCC 59.180 41.667 0.31 0.00 0.00 6.13
615 664 5.049612 GGAGTAAATTTATTCCACTAGCCGC 60.050 44.000 26.57 4.23 38.85 6.53
645 711 6.952358 AGTGAAGTATCTGGTGGAGTAAACTA 59.048 38.462 0.00 0.00 0.00 2.24
666 732 6.460781 ACCGATTATCCGCAATAAATAGTGA 58.539 36.000 0.00 0.00 33.59 3.41
679 746 3.435671 GGGCATTTCTAACCGATTATCCG 59.564 47.826 0.00 0.00 0.00 4.18
682 749 6.838382 ACTTAGGGCATTTCTAACCGATTAT 58.162 36.000 0.00 0.00 0.00 1.28
683 750 6.243216 ACTTAGGGCATTTCTAACCGATTA 57.757 37.500 0.00 0.00 0.00 1.75
684 751 5.112129 ACTTAGGGCATTTCTAACCGATT 57.888 39.130 0.00 0.00 0.00 3.34
703 770 6.127054 TGTTCAGCAAGATGGCTATACTACTT 60.127 38.462 0.00 0.00 43.68 2.24
704 771 5.363868 TGTTCAGCAAGATGGCTATACTACT 59.636 40.000 0.00 0.00 43.68 2.57
705 772 5.601662 TGTTCAGCAAGATGGCTATACTAC 58.398 41.667 0.00 0.00 43.68 2.73
706 773 5.869649 TGTTCAGCAAGATGGCTATACTA 57.130 39.130 0.00 0.00 43.68 1.82
707 774 4.760530 TGTTCAGCAAGATGGCTATACT 57.239 40.909 0.00 0.00 43.68 2.12
708 775 5.123820 TGTTTGTTCAGCAAGATGGCTATAC 59.876 40.000 0.00 0.00 43.68 1.47
709 776 5.252547 TGTTTGTTCAGCAAGATGGCTATA 58.747 37.500 0.00 0.00 43.68 1.31
710 777 4.081406 TGTTTGTTCAGCAAGATGGCTAT 58.919 39.130 0.00 0.00 43.68 2.97
711 778 3.485394 TGTTTGTTCAGCAAGATGGCTA 58.515 40.909 0.00 0.00 43.68 3.93
713 780 2.798976 TGTTTGTTCAGCAAGATGGC 57.201 45.000 0.00 0.00 38.47 4.40
714 781 4.311816 ACTTGTTTGTTCAGCAAGATGG 57.688 40.909 18.33 2.69 41.31 3.51
715 782 5.052172 CGAAACTTGTTTGTTCAGCAAGATG 60.052 40.000 18.33 0.00 41.31 2.90
716 783 5.036737 CGAAACTTGTTTGTTCAGCAAGAT 58.963 37.500 18.33 9.48 41.31 2.40
717 784 4.083003 ACGAAACTTGTTTGTTCAGCAAGA 60.083 37.500 18.33 0.00 41.31 3.02
718 785 4.165779 ACGAAACTTGTTTGTTCAGCAAG 58.834 39.130 3.27 13.35 43.56 4.01
719 786 4.167554 ACGAAACTTGTTTGTTCAGCAA 57.832 36.364 3.27 0.00 34.87 3.91
720 787 3.840890 ACGAAACTTGTTTGTTCAGCA 57.159 38.095 3.27 0.00 0.00 4.41
721 788 5.275741 GCTTAACGAAACTTGTTTGTTCAGC 60.276 40.000 19.03 19.03 34.07 4.26
722 789 5.797934 TGCTTAACGAAACTTGTTTGTTCAG 59.202 36.000 3.27 9.60 0.00 3.02
723 790 5.700846 TGCTTAACGAAACTTGTTTGTTCA 58.299 33.333 3.27 1.12 0.00 3.18
724 791 5.275741 GCTGCTTAACGAAACTTGTTTGTTC 60.276 40.000 3.27 0.00 0.00 3.18
725 792 4.561213 GCTGCTTAACGAAACTTGTTTGTT 59.439 37.500 3.27 10.14 0.00 2.83
726 793 4.102649 GCTGCTTAACGAAACTTGTTTGT 58.897 39.130 3.27 0.52 0.00 2.83
727 794 3.177643 CGCTGCTTAACGAAACTTGTTTG 59.822 43.478 3.27 0.00 0.00 2.93
728 795 3.359654 CGCTGCTTAACGAAACTTGTTT 58.640 40.909 0.00 0.00 0.00 2.83
729 796 2.286772 CCGCTGCTTAACGAAACTTGTT 60.287 45.455 0.00 0.00 0.00 2.83
730 797 1.263217 CCGCTGCTTAACGAAACTTGT 59.737 47.619 0.00 0.00 0.00 3.16
731 798 1.399727 CCCGCTGCTTAACGAAACTTG 60.400 52.381 0.00 0.00 0.00 3.16
732 799 0.872388 CCCGCTGCTTAACGAAACTT 59.128 50.000 0.00 0.00 0.00 2.66
733 800 0.953960 CCCCGCTGCTTAACGAAACT 60.954 55.000 0.00 0.00 0.00 2.66
734 801 1.500396 CCCCGCTGCTTAACGAAAC 59.500 57.895 0.00 0.00 0.00 2.78
735 802 2.329614 GCCCCGCTGCTTAACGAAA 61.330 57.895 0.00 0.00 0.00 3.46
736 803 2.744709 GCCCCGCTGCTTAACGAA 60.745 61.111 0.00 0.00 0.00 3.85
737 804 3.950794 CTGCCCCGCTGCTTAACGA 62.951 63.158 0.00 0.00 0.00 3.85
738 805 3.499737 CTGCCCCGCTGCTTAACG 61.500 66.667 0.00 0.00 0.00 3.18
739 806 2.359975 ACTGCCCCGCTGCTTAAC 60.360 61.111 0.00 0.00 0.00 2.01
740 807 2.359850 CACTGCCCCGCTGCTTAA 60.360 61.111 0.00 0.00 0.00 1.85
751 818 4.373116 TCCGAAGTCCGCACTGCC 62.373 66.667 0.00 0.00 36.84 4.85
752 819 2.564553 ATCTCCGAAGTCCGCACTGC 62.565 60.000 0.00 0.00 36.84 4.40
753 820 0.526524 GATCTCCGAAGTCCGCACTG 60.527 60.000 0.00 0.00 36.84 3.66
754 821 1.810532 GATCTCCGAAGTCCGCACT 59.189 57.895 0.00 0.00 36.84 4.40
755 822 1.586564 CGATCTCCGAAGTCCGCAC 60.587 63.158 0.00 0.00 41.76 5.34
756 823 1.747745 TCGATCTCCGAAGTCCGCA 60.748 57.895 0.00 0.00 45.43 5.69
757 824 3.108343 TCGATCTCCGAAGTCCGC 58.892 61.111 0.00 0.00 45.43 5.54
772 839 1.520368 GCGACGGCAAGTATTTTTCG 58.480 50.000 0.00 0.00 39.62 3.46
787 854 1.519455 CGAGGAGGTCCAATGCGAC 60.519 63.158 0.00 0.00 38.89 5.19
802 878 0.179119 AATAAAGCGGTCCCGACGAG 60.179 55.000 10.46 0.00 42.83 4.18
932 1009 4.428294 TGGATCTCTTCATGATGGGAAC 57.572 45.455 14.59 11.89 0.00 3.62
1258 1335 4.299547 ACGGAGCAGAGCAACGCA 62.300 61.111 5.50 0.00 34.39 5.24
1597 1726 4.671590 TCCTCGCCGGTCAGGTCA 62.672 66.667 17.61 0.44 43.70 4.02
1720 1849 3.249189 TTGCTCTTGGTCCGGCCT 61.249 61.111 14.76 0.00 38.35 5.19
1740 1869 4.424566 GGTCGTAGCCGAACCGCA 62.425 66.667 0.00 0.00 45.13 5.69
1839 1968 1.135333 GAGACATCAGGAGGACGGAAC 59.865 57.143 0.00 0.00 0.00 3.62
1840 1969 1.006043 AGAGACATCAGGAGGACGGAA 59.994 52.381 0.00 0.00 0.00 4.30
1842 1971 1.479709 AAGAGACATCAGGAGGACGG 58.520 55.000 0.00 0.00 0.00 4.79
1843 1972 2.757868 AGAAAGAGACATCAGGAGGACG 59.242 50.000 0.00 0.00 0.00 4.79
1844 1973 4.817318 AAGAAAGAGACATCAGGAGGAC 57.183 45.455 0.00 0.00 0.00 3.85
1847 1976 6.262049 TCGAGATAAGAAAGAGACATCAGGAG 59.738 42.308 0.00 0.00 0.00 3.69
1848 1977 6.122964 TCGAGATAAGAAAGAGACATCAGGA 58.877 40.000 0.00 0.00 0.00 3.86
1849 1978 6.384258 TCGAGATAAGAAAGAGACATCAGG 57.616 41.667 0.00 0.00 0.00 3.86
1850 1979 7.874940 AGATCGAGATAAGAAAGAGACATCAG 58.125 38.462 0.00 0.00 0.00 2.90
1851 1980 7.815840 AGATCGAGATAAGAAAGAGACATCA 57.184 36.000 0.00 0.00 0.00 3.07
1856 1996 6.928979 ACGAAGATCGAGATAAGAAAGAGA 57.071 37.500 6.78 0.00 43.74 3.10
1871 2011 1.644786 CCGGCCACCAAACGAAGATC 61.645 60.000 2.24 0.00 0.00 2.75
1878 2018 2.840572 AAACCCCGGCCACCAAAC 60.841 61.111 2.24 0.00 0.00 2.93
1879 2019 2.522193 GAAACCCCGGCCACCAAA 60.522 61.111 2.24 0.00 0.00 3.28
1880 2020 3.801068 CTGAAACCCCGGCCACCAA 62.801 63.158 2.24 0.00 0.00 3.67
1881 2021 4.278513 CTGAAACCCCGGCCACCA 62.279 66.667 2.24 0.00 0.00 4.17
1883 2023 3.920093 CTCCTGAAACCCCGGCCAC 62.920 68.421 2.24 0.00 0.00 5.01
1884 2024 3.646715 CTCCTGAAACCCCGGCCA 61.647 66.667 2.24 0.00 0.00 5.36
1885 2025 2.211468 ATTCTCCTGAAACCCCGGCC 62.211 60.000 0.00 0.00 35.63 6.13
1886 2026 0.748367 GATTCTCCTGAAACCCCGGC 60.748 60.000 0.00 0.00 35.63 6.13
1887 2027 0.462047 CGATTCTCCTGAAACCCCGG 60.462 60.000 0.00 0.00 35.63 5.73
1888 2028 0.535335 TCGATTCTCCTGAAACCCCG 59.465 55.000 0.00 0.00 35.63 5.73
1889 2029 1.831736 TCTCGATTCTCCTGAAACCCC 59.168 52.381 0.00 0.00 35.63 4.95
1890 2030 2.159028 CCTCTCGATTCTCCTGAAACCC 60.159 54.545 0.00 0.00 35.63 4.11
1891 2031 2.740256 GCCTCTCGATTCTCCTGAAACC 60.740 54.545 0.00 0.00 35.63 3.27
1916 2056 2.124236 CTCCTCCCCTCGTACGCT 60.124 66.667 11.24 0.00 0.00 5.07
2112 2256 2.364632 TCCGCAACCAATTCATCGAAT 58.635 42.857 0.00 0.00 33.25 3.34
2115 2259 2.849880 AATCCGCAACCAATTCATCG 57.150 45.000 0.00 0.00 0.00 3.84
2143 2287 6.127563 GGGTAAAATATGTCCAACGGAAACAT 60.128 38.462 0.00 0.00 37.40 2.71
2182 2326 5.012046 TCTGGCTACTGACATTTCTGAAAGA 59.988 40.000 8.95 0.00 44.68 2.52
2183 2327 5.240891 TCTGGCTACTGACATTTCTGAAAG 58.759 41.667 8.95 3.97 0.00 2.62
2185 2329 4.284490 ACTCTGGCTACTGACATTTCTGAA 59.716 41.667 0.00 0.00 0.00 3.02
2241 2385 2.609459 ACTTAATGAAATCGGCAGAGCG 59.391 45.455 0.00 0.00 0.00 5.03
2273 2417 6.339587 TGTGAATATGAAACTTGTTTCCCC 57.660 37.500 19.53 7.99 0.00 4.81
2287 2431 9.086336 AGTTTTGTGAAGTTGTTTGTGAATATG 57.914 29.630 0.00 0.00 0.00 1.78
2312 2460 5.657474 AGCTTGGATATTTGATTTGCACAG 58.343 37.500 0.00 0.00 0.00 3.66
2376 2526 2.044353 ACAAAGGCATGATTTAGGGGGT 59.956 45.455 0.00 0.00 0.00 4.95
2427 2580 4.151689 CGCCAATAGTTGAGAGACGAAAAA 59.848 41.667 0.00 0.00 0.00 1.94
2436 2589 6.519679 TCTAAACTACGCCAATAGTTGAGA 57.480 37.500 10.99 10.99 45.00 3.27
2444 2597 5.944007 AGGACAAAATCTAAACTACGCCAAT 59.056 36.000 0.00 0.00 0.00 3.16
2455 2608 9.581099 GTTTTGAAGTTGAAGGACAAAATCTAA 57.419 29.630 0.00 0.00 40.64 2.10
2463 2616 4.398044 GTCTGGTTTTGAAGTTGAAGGACA 59.602 41.667 0.00 0.00 0.00 4.02
2483 2636 5.009010 CAGTAGTTGAAGGTGCAAATTGTCT 59.991 40.000 0.00 0.00 0.00 3.41
2489 2642 5.646606 GTTTTCAGTAGTTGAAGGTGCAAA 58.353 37.500 0.00 0.00 46.01 3.68
2497 2650 4.573201 CCTTGTCCGTTTTCAGTAGTTGAA 59.427 41.667 0.00 0.00 43.92 2.69
2498 2651 4.124238 CCTTGTCCGTTTTCAGTAGTTGA 58.876 43.478 0.00 0.00 0.00 3.18
2505 2658 1.937899 ACGAACCTTGTCCGTTTTCAG 59.062 47.619 0.00 0.00 32.03 3.02
2535 2688 2.482142 GCACCAAAACCGGTCAAAATCA 60.482 45.455 8.04 0.00 37.07 2.57
2644 2800 5.344933 GCGGATTTGGAAAAAGTATGTGAAC 59.655 40.000 0.00 0.00 0.00 3.18
2750 2910 8.532977 AAATTGCGTACATTTTTCAAGCTAAT 57.467 26.923 0.00 0.00 0.00 1.73
2751 2911 7.938563 AAATTGCGTACATTTTTCAAGCTAA 57.061 28.000 0.00 0.00 0.00 3.09
2754 2914 6.418141 ACAAAATTGCGTACATTTTTCAAGC 58.582 32.000 0.00 0.00 37.29 4.01
2809 2969 9.531942 TTCACATACCGTTCACGTAATTATTAT 57.468 29.630 0.00 0.00 37.74 1.28
2810 2970 8.923609 TTCACATACCGTTCACGTAATTATTA 57.076 30.769 0.00 0.00 37.74 0.98
2867 3027 7.618502 TTTGGCGAACAAAGTACACATATAT 57.381 32.000 0.00 0.00 43.81 0.86
2879 3039 2.294791 CCCATACTGTTTGGCGAACAAA 59.705 45.455 20.24 12.26 46.99 2.83
2886 3046 4.799564 TCAAATTCCCATACTGTTTGGC 57.200 40.909 11.29 0.00 32.60 4.52
2911 3071 5.177725 ACTTTTCCAAGTTCGCGTAATTT 57.822 34.783 5.77 0.00 40.66 1.82
2913 3073 4.143263 CGTACTTTTCCAAGTTCGCGTAAT 60.143 41.667 5.77 0.00 43.86 1.89
2920 3100 5.358298 AATCTGCGTACTTTTCCAAGTTC 57.642 39.130 0.00 0.00 40.66 3.01
2956 3136 8.981647 CAAATCCCTGAACTTTTCTAAAATGTG 58.018 33.333 0.00 0.00 0.00 3.21
2958 3138 9.762933 TTCAAATCCCTGAACTTTTCTAAAATG 57.237 29.630 0.00 0.00 30.31 2.32
2965 3145 6.573434 ACTGTTTCAAATCCCTGAACTTTTC 58.427 36.000 0.00 0.00 35.07 2.29
2968 3148 6.294731 GCATACTGTTTCAAATCCCTGAACTT 60.295 38.462 0.00 0.00 35.07 2.66
2991 3171 6.561737 TCGTGTAATGTTTTCAAATAGGCA 57.438 33.333 0.00 0.00 0.00 4.75
3005 3185 9.987901 GTGTAATTGTTTCAAATTCGTGTAATG 57.012 29.630 0.00 0.00 32.16 1.90
3011 3191 6.967767 TCAACGTGTAATTGTTTCAAATTCGT 59.032 30.769 0.00 0.00 32.28 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.