Multiple sequence alignment - TraesCS5B01G475800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G475800 chr5B 100.000 2500 0 0 1 2500 648317775 648315276 0.000000e+00 4617
1 TraesCS5B01G475800 chr5B 98.885 1883 20 1 619 2500 648338037 648339919 0.000000e+00 3360
2 TraesCS5B01G475800 chr5B 90.450 911 58 10 716 1601 648279082 648278176 0.000000e+00 1173
3 TraesCS5B01G475800 chr5B 97.995 399 8 0 3 401 648330423 648330025 0.000000e+00 693
4 TraesCS5B01G475800 chr7B 92.810 904 59 5 1600 2500 371737814 371738714 0.000000e+00 1304
5 TraesCS5B01G475800 chr1A 92.597 905 60 4 1599 2500 16536886 16537786 0.000000e+00 1293
6 TraesCS5B01G475800 chr3A 93.295 880 47 6 1632 2500 730691801 730690923 0.000000e+00 1288
7 TraesCS5B01G475800 chr3A 93.805 113 7 0 1600 1712 730691914 730691802 1.190000e-38 171
8 TraesCS5B01G475800 chr6A 91.189 908 46 7 1599 2500 449588265 449587386 0.000000e+00 1203
9 TraesCS5B01G475800 chr5A 90.214 889 55 15 740 1601 643865264 643864381 0.000000e+00 1131
10 TraesCS5B01G475800 chr5A 89.231 910 66 13 1595 2500 174799455 174798574 0.000000e+00 1109
11 TraesCS5B01G475800 chr5A 92.381 105 8 0 447 551 643873106 643873002 1.550000e-32 150
12 TraesCS5B01G475800 chr4B 92.497 773 53 5 1599 2368 258378726 258377956 0.000000e+00 1101
13 TraesCS5B01G475800 chr5D 88.018 893 50 27 717 1592 515642342 515641490 0.000000e+00 1003
14 TraesCS5B01G475800 chr5D 88.667 150 16 1 550 699 515644082 515643934 5.490000e-42 182
15 TraesCS5B01G475800 chrUn 100.000 408 0 0 1903 2310 477883930 477884337 0.000000e+00 754
16 TraesCS5B01G475800 chr6B 96.241 399 15 0 3 401 674135812 674136210 0.000000e+00 654
17 TraesCS5B01G475800 chr6B 95.980 398 16 0 3 400 677995809 677995412 0.000000e+00 647
18 TraesCS5B01G475800 chr6B 95.729 398 17 0 3 400 677951521 677951124 2.100000e-180 641
19 TraesCS5B01G475800 chr6B 95.729 398 16 1 3 400 677807874 677807478 7.540000e-180 640
20 TraesCS5B01G475800 chr6B 95.274 402 14 2 3 399 613932194 613932595 1.260000e-177 632
21 TraesCS5B01G475800 chr2B 96.000 400 13 1 3 399 610478366 610478765 0.000000e+00 647
22 TraesCS5B01G475800 chr2B 95.718 397 16 1 3 399 646101618 646102013 2.710000e-179 638
23 TraesCS5B01G475800 chr2B 95.250 400 18 1 3 401 610465552 610465951 1.260000e-177 632
24 TraesCS5B01G475800 chr1D 80.357 168 17 9 550 702 41334252 41334086 2.030000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G475800 chr5B 648315276 648317775 2499 True 4617.0 4617 100.0000 1 2500 1 chr5B.!!$R2 2499
1 TraesCS5B01G475800 chr5B 648338037 648339919 1882 False 3360.0 3360 98.8850 619 2500 1 chr5B.!!$F1 1881
2 TraesCS5B01G475800 chr5B 648278176 648279082 906 True 1173.0 1173 90.4500 716 1601 1 chr5B.!!$R1 885
3 TraesCS5B01G475800 chr7B 371737814 371738714 900 False 1304.0 1304 92.8100 1600 2500 1 chr7B.!!$F1 900
4 TraesCS5B01G475800 chr1A 16536886 16537786 900 False 1293.0 1293 92.5970 1599 2500 1 chr1A.!!$F1 901
5 TraesCS5B01G475800 chr3A 730690923 730691914 991 True 729.5 1288 93.5500 1600 2500 2 chr3A.!!$R1 900
6 TraesCS5B01G475800 chr6A 449587386 449588265 879 True 1203.0 1203 91.1890 1599 2500 1 chr6A.!!$R1 901
7 TraesCS5B01G475800 chr5A 643864381 643865264 883 True 1131.0 1131 90.2140 740 1601 1 chr5A.!!$R2 861
8 TraesCS5B01G475800 chr5A 174798574 174799455 881 True 1109.0 1109 89.2310 1595 2500 1 chr5A.!!$R1 905
9 TraesCS5B01G475800 chr4B 258377956 258378726 770 True 1101.0 1101 92.4970 1599 2368 1 chr4B.!!$R1 769
10 TraesCS5B01G475800 chr5D 515641490 515644082 2592 True 592.5 1003 88.3425 550 1592 2 chr5D.!!$R1 1042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.037326 CGTCATGGGCACAGTGTACT 60.037 55.0 1.61 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2310 4055 7.22791 GGCATATTAAAAGATCGAACAGGGTTA 59.772 37.037 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.180496 CTTTCGGGTCGTACAGGC 57.820 61.111 0.00 0.00 0.00 4.85
18 19 1.447314 CTTTCGGGTCGTACAGGCC 60.447 63.158 0.00 0.00 46.15 5.19
23 24 4.065281 GGTCGTACAGGCCAGCGT 62.065 66.667 5.01 0.76 46.14 5.07
24 25 2.506438 GTCGTACAGGCCAGCGTC 60.506 66.667 5.01 0.00 0.00 5.19
25 26 2.986979 TCGTACAGGCCAGCGTCA 60.987 61.111 5.01 0.00 0.00 4.35
26 27 2.184322 CGTACAGGCCAGCGTCAT 59.816 61.111 5.01 0.00 0.00 3.06
27 28 2.167219 CGTACAGGCCAGCGTCATG 61.167 63.158 5.01 0.00 0.00 3.07
28 29 1.815421 GTACAGGCCAGCGTCATGG 60.815 63.158 5.01 0.00 43.72 3.66
29 30 3.030168 TACAGGCCAGCGTCATGGG 62.030 63.158 5.01 0.00 40.97 4.00
34 35 3.129502 CCAGCGTCATGGGCACAG 61.130 66.667 11.40 0.00 36.64 3.66
35 36 2.359107 CAGCGTCATGGGCACAGT 60.359 61.111 11.40 0.00 0.00 3.55
36 37 2.359107 AGCGTCATGGGCACAGTG 60.359 61.111 11.40 0.00 0.00 3.66
37 38 2.669569 GCGTCATGGGCACAGTGT 60.670 61.111 1.61 0.00 0.00 3.55
38 39 1.375396 GCGTCATGGGCACAGTGTA 60.375 57.895 1.61 0.00 0.00 2.90
39 40 1.635663 GCGTCATGGGCACAGTGTAC 61.636 60.000 1.61 0.00 0.00 2.90
40 41 0.037326 CGTCATGGGCACAGTGTACT 60.037 55.000 1.61 0.00 0.00 2.73
50 51 4.343581 AGTGTACTGCGCACTGTG 57.656 55.556 5.66 2.76 44.52 3.66
51 52 1.300931 AGTGTACTGCGCACTGTGG 60.301 57.895 5.66 0.00 44.52 4.17
52 53 2.664851 TGTACTGCGCACTGTGGC 60.665 61.111 5.66 11.53 0.00 5.01
53 54 2.357517 GTACTGCGCACTGTGGCT 60.358 61.111 5.66 5.84 0.00 4.75
54 55 2.357396 TACTGCGCACTGTGGCTG 60.357 61.111 5.66 18.94 0.00 4.85
55 56 2.866726 TACTGCGCACTGTGGCTGA 61.867 57.895 23.86 11.98 33.08 4.26
56 57 2.770132 TACTGCGCACTGTGGCTGAG 62.770 60.000 23.86 15.63 33.08 3.35
57 58 4.994471 TGCGCACTGTGGCTGAGG 62.994 66.667 5.66 0.00 0.00 3.86
58 59 4.996434 GCGCACTGTGGCTGAGGT 62.996 66.667 10.21 0.00 0.00 3.85
59 60 2.740055 CGCACTGTGGCTGAGGTC 60.740 66.667 10.21 0.00 0.00 3.85
60 61 2.427320 GCACTGTGGCTGAGGTCA 59.573 61.111 10.21 0.00 0.00 4.02
61 62 1.670406 GCACTGTGGCTGAGGTCAG 60.670 63.158 10.21 2.37 46.40 3.51
62 63 1.004080 CACTGTGGCTGAGGTCAGG 60.004 63.158 9.03 0.00 43.94 3.86
63 64 2.219875 ACTGTGGCTGAGGTCAGGG 61.220 63.158 9.03 0.00 43.94 4.45
64 65 3.618780 CTGTGGCTGAGGTCAGGGC 62.619 68.421 9.03 3.19 43.94 5.19
65 66 3.640407 GTGGCTGAGGTCAGGGCA 61.640 66.667 9.03 5.55 43.94 5.36
66 67 3.324930 TGGCTGAGGTCAGGGCAG 61.325 66.667 9.03 0.00 43.94 4.85
67 68 4.106925 GGCTGAGGTCAGGGCAGG 62.107 72.222 9.03 0.00 43.94 4.85
68 69 4.792804 GCTGAGGTCAGGGCAGGC 62.793 72.222 9.03 0.00 43.94 4.85
69 70 3.324930 CTGAGGTCAGGGCAGGCA 61.325 66.667 0.00 0.00 40.20 4.75
70 71 2.611800 TGAGGTCAGGGCAGGCAT 60.612 61.111 0.00 0.00 0.00 4.40
71 72 2.124403 GAGGTCAGGGCAGGCATG 60.124 66.667 1.37 1.37 0.00 4.06
72 73 3.711059 GAGGTCAGGGCAGGCATGG 62.711 68.421 8.98 0.00 0.00 3.66
101 102 3.905678 CGCCTCGCCGGAGATCTT 61.906 66.667 8.83 0.00 43.27 2.40
102 103 2.028337 GCCTCGCCGGAGATCTTC 59.972 66.667 8.83 0.00 43.27 2.87
103 104 2.731374 CCTCGCCGGAGATCTTCC 59.269 66.667 8.83 0.00 43.27 3.46
112 113 2.339728 GGAGATCTTCCAGCGATACG 57.660 55.000 0.00 0.00 46.01 3.06
113 114 1.068194 GGAGATCTTCCAGCGATACGG 60.068 57.143 0.00 0.00 46.01 4.02
114 115 0.315568 AGATCTTCCAGCGATACGGC 59.684 55.000 0.00 0.00 0.00 5.68
115 116 0.315568 GATCTTCCAGCGATACGGCT 59.684 55.000 0.00 0.00 46.13 5.52
116 117 0.315568 ATCTTCCAGCGATACGGCTC 59.684 55.000 0.00 0.00 42.53 4.70
117 118 1.035385 TCTTCCAGCGATACGGCTCA 61.035 55.000 0.00 0.00 42.53 4.26
118 119 0.872021 CTTCCAGCGATACGGCTCAC 60.872 60.000 0.00 0.00 42.53 3.51
119 120 1.320344 TTCCAGCGATACGGCTCACT 61.320 55.000 0.00 0.00 42.53 3.41
120 121 1.589993 CCAGCGATACGGCTCACTG 60.590 63.158 0.00 0.00 42.53 3.66
121 122 1.139734 CAGCGATACGGCTCACTGT 59.860 57.895 0.00 0.00 42.53 3.55
122 123 0.380733 CAGCGATACGGCTCACTGTA 59.619 55.000 0.00 0.00 42.53 2.74
123 124 0.663688 AGCGATACGGCTCACTGTAG 59.336 55.000 0.00 0.00 40.95 2.74
124 125 0.935366 GCGATACGGCTCACTGTAGC 60.935 60.000 0.00 0.00 40.95 3.58
130 131 3.819188 GCTCACTGTAGCCATGCC 58.181 61.111 0.00 0.00 36.45 4.40
131 132 2.176273 GCTCACTGTAGCCATGCCG 61.176 63.158 0.00 0.00 36.45 5.69
132 133 1.522355 CTCACTGTAGCCATGCCGG 60.522 63.158 0.00 0.00 38.11 6.13
141 142 4.169696 CCATGCCGGCCCTTCGTA 62.170 66.667 26.77 2.60 0.00 3.43
142 143 2.124901 CATGCCGGCCCTTCGTAA 60.125 61.111 26.77 1.65 0.00 3.18
143 144 2.180204 CATGCCGGCCCTTCGTAAG 61.180 63.158 26.77 0.00 0.00 2.34
144 145 4.770874 TGCCGGCCCTTCGTAAGC 62.771 66.667 26.77 0.00 37.18 3.09
145 146 4.770874 GCCGGCCCTTCGTAAGCA 62.771 66.667 18.11 0.00 37.18 3.91
146 147 2.511600 CCGGCCCTTCGTAAGCAG 60.512 66.667 0.00 0.00 37.18 4.24
180 181 4.137872 CGTGACCGTACCCCGCAT 62.138 66.667 0.00 0.00 34.38 4.73
181 182 2.202837 GTGACCGTACCCCGCATC 60.203 66.667 0.00 0.00 34.38 3.91
182 183 3.829044 TGACCGTACCCCGCATCG 61.829 66.667 0.00 0.00 34.38 3.84
183 184 3.830192 GACCGTACCCCGCATCGT 61.830 66.667 0.00 0.00 34.38 3.73
184 185 2.440065 ACCGTACCCCGCATCGTA 60.440 61.111 0.00 0.00 34.38 3.43
185 186 2.026590 CCGTACCCCGCATCGTAC 59.973 66.667 0.00 0.00 34.38 3.67
186 187 2.484062 CCGTACCCCGCATCGTACT 61.484 63.158 0.00 0.00 34.05 2.73
187 188 1.434696 CGTACCCCGCATCGTACTT 59.565 57.895 0.00 0.00 34.05 2.24
188 189 0.593263 CGTACCCCGCATCGTACTTC 60.593 60.000 0.00 0.00 34.05 3.01
189 190 0.593263 GTACCCCGCATCGTACTTCG 60.593 60.000 0.00 0.00 41.41 3.79
190 191 1.031571 TACCCCGCATCGTACTTCGT 61.032 55.000 0.00 0.00 40.80 3.85
191 192 1.876714 CCCCGCATCGTACTTCGTG 60.877 63.158 0.00 0.00 40.80 4.35
192 193 1.138036 CCCGCATCGTACTTCGTGA 59.862 57.895 0.00 0.00 40.80 4.35
193 194 0.248907 CCCGCATCGTACTTCGTGAT 60.249 55.000 0.00 0.00 40.80 3.06
194 195 0.846401 CCGCATCGTACTTCGTGATG 59.154 55.000 3.98 3.98 41.84 3.07
195 196 1.533129 CCGCATCGTACTTCGTGATGA 60.533 52.381 10.71 0.00 41.54 2.92
196 197 1.775770 CGCATCGTACTTCGTGATGAG 59.224 52.381 10.71 4.91 41.54 2.90
197 198 2.120232 GCATCGTACTTCGTGATGAGG 58.880 52.381 10.71 0.00 41.54 3.86
198 199 2.732366 CATCGTACTTCGTGATGAGGG 58.268 52.381 2.52 0.00 41.54 4.30
199 200 2.118313 TCGTACTTCGTGATGAGGGA 57.882 50.000 0.00 0.00 40.80 4.20
200 201 2.014857 TCGTACTTCGTGATGAGGGAG 58.985 52.381 0.00 0.00 40.80 4.30
201 202 1.065701 CGTACTTCGTGATGAGGGAGG 59.934 57.143 0.00 0.00 34.52 4.30
202 203 2.376109 GTACTTCGTGATGAGGGAGGA 58.624 52.381 0.00 0.00 0.00 3.71
203 204 1.479709 ACTTCGTGATGAGGGAGGAG 58.520 55.000 0.00 0.00 0.00 3.69
204 205 1.272760 ACTTCGTGATGAGGGAGGAGT 60.273 52.381 0.00 0.00 0.00 3.85
205 206 1.407258 CTTCGTGATGAGGGAGGAGTC 59.593 57.143 0.00 0.00 0.00 3.36
206 207 0.331616 TCGTGATGAGGGAGGAGTCA 59.668 55.000 0.00 0.00 0.00 3.41
207 208 0.457851 CGTGATGAGGGAGGAGTCAC 59.542 60.000 0.00 0.00 36.67 3.67
208 209 0.457851 GTGATGAGGGAGGAGTCACG 59.542 60.000 0.00 0.00 31.15 4.35
209 210 0.684479 TGATGAGGGAGGAGTCACGG 60.684 60.000 0.00 0.00 0.00 4.94
210 211 1.381872 ATGAGGGAGGAGTCACGGG 60.382 63.158 0.00 0.00 0.00 5.28
211 212 3.462678 GAGGGAGGAGTCACGGGC 61.463 72.222 0.00 0.00 0.00 6.13
215 216 4.131088 GAGGAGTCACGGGCCGAC 62.131 72.222 35.78 21.80 0.00 4.79
216 217 4.680537 AGGAGTCACGGGCCGACT 62.681 66.667 35.78 26.59 46.32 4.18
219 220 3.063084 AGTCACGGGCCGACTCTC 61.063 66.667 35.78 16.89 39.56 3.20
220 221 4.131088 GTCACGGGCCGACTCTCC 62.131 72.222 35.78 9.91 0.00 3.71
221 222 4.671590 TCACGGGCCGACTCTCCA 62.672 66.667 35.78 4.46 0.00 3.86
222 223 4.135153 CACGGGCCGACTCTCCAG 62.135 72.222 35.78 7.43 0.00 3.86
223 224 4.361971 ACGGGCCGACTCTCCAGA 62.362 66.667 35.78 0.00 0.00 3.86
232 233 3.520402 CTCTCCAGAGTCGGCCTC 58.480 66.667 0.00 0.00 40.80 4.70
239 240 3.520402 GAGTCGGCCTCTCTGGAG 58.480 66.667 14.83 0.00 37.22 3.86
252 253 2.922503 TGGAGGTCGCCAGCTTGA 60.923 61.111 0.00 0.00 33.10 3.02
253 254 2.347490 GGAGGTCGCCAGCTTGAA 59.653 61.111 0.00 0.00 0.00 2.69
254 255 1.743252 GGAGGTCGCCAGCTTGAAG 60.743 63.158 0.00 0.00 0.00 3.02
255 256 1.004440 GAGGTCGCCAGCTTGAAGT 60.004 57.895 0.00 0.00 0.00 3.01
256 257 1.004440 AGGTCGCCAGCTTGAAGTC 60.004 57.895 0.00 0.00 0.00 3.01
257 258 2.383527 GGTCGCCAGCTTGAAGTCG 61.384 63.158 0.00 0.00 0.00 4.18
258 259 2.048222 TCGCCAGCTTGAAGTCGG 60.048 61.111 0.00 0.00 0.00 4.79
259 260 3.793144 CGCCAGCTTGAAGTCGGC 61.793 66.667 14.53 14.53 39.45 5.54
260 261 2.359230 GCCAGCTTGAAGTCGGCT 60.359 61.111 16.49 0.00 39.73 5.52
261 262 1.968540 GCCAGCTTGAAGTCGGCTT 60.969 57.895 16.49 0.00 39.73 4.35
262 263 1.871772 CCAGCTTGAAGTCGGCTTG 59.128 57.895 7.19 0.00 34.61 4.01
263 264 0.886490 CCAGCTTGAAGTCGGCTTGT 60.886 55.000 7.19 0.00 34.61 3.16
264 265 0.514691 CAGCTTGAAGTCGGCTTGTC 59.485 55.000 7.19 0.00 34.61 3.18
265 266 0.394565 AGCTTGAAGTCGGCTTGTCT 59.605 50.000 7.19 0.00 34.61 3.41
266 267 1.202698 AGCTTGAAGTCGGCTTGTCTT 60.203 47.619 7.19 0.00 34.61 3.01
267 268 2.037251 AGCTTGAAGTCGGCTTGTCTTA 59.963 45.455 7.19 0.00 34.61 2.10
268 269 2.413453 GCTTGAAGTCGGCTTGTCTTAG 59.587 50.000 7.19 0.00 34.61 2.18
269 270 3.861131 GCTTGAAGTCGGCTTGTCTTAGA 60.861 47.826 7.19 0.00 34.61 2.10
270 271 3.577649 TGAAGTCGGCTTGTCTTAGAG 57.422 47.619 7.19 0.00 34.61 2.43
271 272 2.891580 TGAAGTCGGCTTGTCTTAGAGT 59.108 45.455 7.19 0.00 34.61 3.24
272 273 3.057456 TGAAGTCGGCTTGTCTTAGAGTC 60.057 47.826 7.19 0.00 34.61 3.36
273 274 1.469308 AGTCGGCTTGTCTTAGAGTCG 59.531 52.381 0.00 0.00 42.00 4.18
274 275 0.170561 TCGGCTTGTCTTAGAGTCGC 59.829 55.000 0.00 0.00 40.55 5.19
275 276 0.802607 CGGCTTGTCTTAGAGTCGCC 60.803 60.000 5.77 5.77 34.01 5.54
276 277 0.802607 GGCTTGTCTTAGAGTCGCCG 60.803 60.000 0.93 0.00 0.00 6.46
277 278 0.109226 GCTTGTCTTAGAGTCGCCGT 60.109 55.000 0.00 0.00 0.00 5.68
278 279 1.897641 CTTGTCTTAGAGTCGCCGTC 58.102 55.000 0.00 0.00 0.00 4.79
279 280 1.469308 CTTGTCTTAGAGTCGCCGTCT 59.531 52.381 0.00 0.00 0.00 4.18
280 281 0.803117 TGTCTTAGAGTCGCCGTCTG 59.197 55.000 0.00 0.00 0.00 3.51
281 282 0.099082 GTCTTAGAGTCGCCGTCTGG 59.901 60.000 0.00 0.00 38.77 3.86
282 283 1.030488 TCTTAGAGTCGCCGTCTGGG 61.030 60.000 0.00 0.00 39.58 4.45
283 284 1.001764 TTAGAGTCGCCGTCTGGGA 60.002 57.895 0.00 0.00 38.47 4.37
291 292 3.382832 CCGTCTGGGACTCGGCTT 61.383 66.667 0.00 0.00 38.47 4.35
292 293 2.125912 CGTCTGGGACTCGGCTTG 60.126 66.667 0.00 0.00 0.00 4.01
293 294 2.932234 CGTCTGGGACTCGGCTTGT 61.932 63.158 0.00 0.00 0.00 3.16
294 295 1.079750 GTCTGGGACTCGGCTTGTC 60.080 63.158 0.00 0.00 0.00 3.18
295 296 1.228894 TCTGGGACTCGGCTTGTCT 60.229 57.895 6.68 0.00 35.04 3.41
296 297 0.832135 TCTGGGACTCGGCTTGTCTT 60.832 55.000 6.68 0.00 35.04 3.01
297 298 0.671781 CTGGGACTCGGCTTGTCTTG 60.672 60.000 6.68 0.00 35.04 3.02
298 299 1.376037 GGGACTCGGCTTGTCTTGG 60.376 63.158 6.68 0.00 35.04 3.61
299 300 1.376037 GGACTCGGCTTGTCTTGGG 60.376 63.158 6.68 0.00 35.04 4.12
300 301 1.376037 GACTCGGCTTGTCTTGGGG 60.376 63.158 0.51 0.00 0.00 4.96
301 302 2.113243 GACTCGGCTTGTCTTGGGGT 62.113 60.000 0.51 0.00 0.00 4.95
302 303 1.376037 CTCGGCTTGTCTTGGGGTC 60.376 63.158 0.00 0.00 0.00 4.46
303 304 2.742372 CGGCTTGTCTTGGGGTCG 60.742 66.667 0.00 0.00 0.00 4.79
304 305 3.056328 GGCTTGTCTTGGGGTCGC 61.056 66.667 0.00 0.00 0.00 5.19
305 306 3.056328 GCTTGTCTTGGGGTCGCC 61.056 66.667 0.00 0.00 0.00 5.54
306 307 2.742372 CTTGTCTTGGGGTCGCCG 60.742 66.667 0.87 0.00 0.00 6.46
307 308 3.530910 CTTGTCTTGGGGTCGCCGT 62.531 63.158 0.87 0.00 0.00 5.68
308 309 3.524648 TTGTCTTGGGGTCGCCGTC 62.525 63.158 0.87 0.00 0.00 4.79
309 310 3.692406 GTCTTGGGGTCGCCGTCT 61.692 66.667 0.87 0.00 0.00 4.18
310 311 3.691342 TCTTGGGGTCGCCGTCTG 61.691 66.667 0.87 0.00 0.00 3.51
311 312 4.760047 CTTGGGGTCGCCGTCTGG 62.760 72.222 0.87 0.00 38.77 3.86
322 323 4.135153 CGTCTGGGACTCGGCCTG 62.135 72.222 0.00 0.00 0.00 4.85
323 324 2.680352 GTCTGGGACTCGGCCTGA 60.680 66.667 0.00 0.00 0.00 3.86
348 349 4.115199 GGCCTGCCCCGATGTCTT 62.115 66.667 0.00 0.00 0.00 3.01
349 350 2.825836 GCCTGCCCCGATGTCTTG 60.826 66.667 0.00 0.00 0.00 3.02
350 351 2.989639 CCTGCCCCGATGTCTTGA 59.010 61.111 0.00 0.00 0.00 3.02
351 352 1.299648 CCTGCCCCGATGTCTTGAA 59.700 57.895 0.00 0.00 0.00 2.69
352 353 0.322456 CCTGCCCCGATGTCTTGAAA 60.322 55.000 0.00 0.00 0.00 2.69
353 354 1.089920 CTGCCCCGATGTCTTGAAAG 58.910 55.000 0.00 0.00 0.00 2.62
354 355 0.322456 TGCCCCGATGTCTTGAAAGG 60.322 55.000 0.00 0.00 0.00 3.11
355 356 0.322546 GCCCCGATGTCTTGAAAGGT 60.323 55.000 0.00 0.00 0.00 3.50
356 357 1.739067 CCCCGATGTCTTGAAAGGTC 58.261 55.000 0.00 0.00 0.00 3.85
357 358 1.679032 CCCCGATGTCTTGAAAGGTCC 60.679 57.143 0.00 0.00 0.00 4.46
358 359 1.279271 CCCGATGTCTTGAAAGGTCCT 59.721 52.381 0.00 0.00 0.00 3.85
359 360 2.350522 CCGATGTCTTGAAAGGTCCTG 58.649 52.381 0.00 0.00 0.00 3.86
360 361 2.350522 CGATGTCTTGAAAGGTCCTGG 58.649 52.381 0.00 0.00 0.00 4.45
361 362 2.716217 GATGTCTTGAAAGGTCCTGGG 58.284 52.381 0.00 0.00 0.00 4.45
362 363 1.814429 TGTCTTGAAAGGTCCTGGGA 58.186 50.000 0.00 0.00 0.00 4.37
363 364 1.420138 TGTCTTGAAAGGTCCTGGGAC 59.580 52.381 11.03 11.03 43.87 4.46
364 365 1.420138 GTCTTGAAAGGTCCTGGGACA 59.580 52.381 19.70 0.00 46.20 4.02
365 366 1.420138 TCTTGAAAGGTCCTGGGACAC 59.580 52.381 19.70 10.22 46.20 3.67
366 367 0.107831 TTGAAAGGTCCTGGGACACG 59.892 55.000 19.70 0.00 46.20 4.49
367 368 1.003718 GAAAGGTCCTGGGACACGG 60.004 63.158 19.70 0.00 46.20 4.94
368 369 2.465055 GAAAGGTCCTGGGACACGGG 62.465 65.000 19.70 0.00 46.20 5.28
369 370 3.786866 AAGGTCCTGGGACACGGGT 62.787 63.158 19.70 0.00 46.44 5.28
370 371 3.246880 GGTCCTGGGACACGGGTT 61.247 66.667 19.70 0.00 46.44 4.11
371 372 1.914764 GGTCCTGGGACACGGGTTA 60.915 63.158 19.70 0.00 46.44 2.85
372 373 1.595357 GTCCTGGGACACGGGTTAG 59.405 63.158 14.20 0.00 46.44 2.34
373 374 2.267961 CCTGGGACACGGGTTAGC 59.732 66.667 0.00 0.00 41.03 3.09
374 375 2.267961 CTGGGACACGGGTTAGCC 59.732 66.667 0.00 0.00 0.00 3.93
375 376 2.203877 TGGGACACGGGTTAGCCT 60.204 61.111 0.00 0.00 34.45 4.58
376 377 0.974010 CTGGGACACGGGTTAGCCTA 60.974 60.000 0.00 0.00 34.45 3.93
377 378 1.259840 TGGGACACGGGTTAGCCTAC 61.260 60.000 0.00 0.00 34.45 3.18
378 379 1.519246 GGACACGGGTTAGCCTACC 59.481 63.158 0.00 0.00 37.47 3.18
389 390 4.123545 GCCTACCCGTGGCCCATT 62.124 66.667 0.00 0.00 44.32 3.16
390 391 2.748513 GCCTACCCGTGGCCCATTA 61.749 63.158 0.00 0.00 44.32 1.90
391 392 1.147600 CCTACCCGTGGCCCATTAC 59.852 63.158 0.00 0.00 0.00 1.89
392 393 1.342672 CCTACCCGTGGCCCATTACT 61.343 60.000 0.00 0.00 0.00 2.24
393 394 0.106149 CTACCCGTGGCCCATTACTC 59.894 60.000 0.00 0.00 0.00 2.59
394 395 1.339644 TACCCGTGGCCCATTACTCC 61.340 60.000 0.00 0.00 0.00 3.85
395 396 2.203015 CCGTGGCCCATTACTCCG 60.203 66.667 0.00 0.00 0.00 4.63
396 397 2.727392 CCGTGGCCCATTACTCCGA 61.727 63.158 0.00 0.00 0.00 4.55
397 398 1.520787 CGTGGCCCATTACTCCGAC 60.521 63.158 0.00 0.00 0.00 4.79
398 399 1.600107 GTGGCCCATTACTCCGACA 59.400 57.895 0.00 0.00 0.00 4.35
399 400 0.462047 GTGGCCCATTACTCCGACAG 60.462 60.000 0.00 0.00 0.00 3.51
400 401 0.907704 TGGCCCATTACTCCGACAGT 60.908 55.000 0.00 0.00 39.41 3.55
401 402 0.179081 GGCCCATTACTCCGACAGTC 60.179 60.000 0.00 0.00 36.43 3.51
402 403 0.527817 GCCCATTACTCCGACAGTCG 60.528 60.000 16.50 16.50 40.07 4.18
403 404 1.100510 CCCATTACTCCGACAGTCGA 58.899 55.000 24.88 9.48 43.74 4.20
404 405 1.681793 CCCATTACTCCGACAGTCGAT 59.318 52.381 24.88 11.55 43.74 3.59
405 406 2.543861 CCCATTACTCCGACAGTCGATG 60.544 54.545 24.88 17.67 43.74 3.84
407 408 3.428999 CCATTACTCCGACAGTCGATGTT 60.429 47.826 24.88 7.91 44.17 2.71
408 409 2.913777 TACTCCGACAGTCGATGTTG 57.086 50.000 24.88 7.17 44.17 3.33
409 410 1.244816 ACTCCGACAGTCGATGTTGA 58.755 50.000 24.88 11.23 45.05 3.18
410 411 1.200252 ACTCCGACAGTCGATGTTGAG 59.800 52.381 24.88 21.34 45.05 3.02
411 412 1.468914 CTCCGACAGTCGATGTTGAGA 59.531 52.381 24.88 9.81 45.05 3.27
412 413 1.199327 TCCGACAGTCGATGTTGAGAC 59.801 52.381 24.88 0.00 45.05 3.36
413 414 1.068541 CCGACAGTCGATGTTGAGACA 60.069 52.381 24.88 0.00 45.05 3.41
415 416 2.595977 CGACAGTCGATGTTGAGACATG 59.404 50.000 18.63 0.00 46.27 3.21
416 417 3.670627 CGACAGTCGATGTTGAGACATGA 60.671 47.826 18.63 0.00 46.27 3.07
417 418 3.842820 ACAGTCGATGTTGAGACATGAG 58.157 45.455 0.00 0.00 46.27 2.90
418 419 3.507622 ACAGTCGATGTTGAGACATGAGA 59.492 43.478 0.00 0.00 46.27 3.27
419 420 4.021981 ACAGTCGATGTTGAGACATGAGAA 60.022 41.667 0.00 0.00 46.27 2.87
420 421 5.107824 CAGTCGATGTTGAGACATGAGAAT 58.892 41.667 0.00 0.00 46.27 2.40
421 422 5.579904 CAGTCGATGTTGAGACATGAGAATT 59.420 40.000 0.00 0.00 46.27 2.17
422 423 5.809562 AGTCGATGTTGAGACATGAGAATTC 59.190 40.000 0.00 0.00 46.27 2.17
423 424 5.809562 GTCGATGTTGAGACATGAGAATTCT 59.190 40.000 7.95 7.95 46.27 2.40
424 425 6.312426 GTCGATGTTGAGACATGAGAATTCTT 59.688 38.462 9.87 0.00 46.27 2.52
425 426 6.312180 TCGATGTTGAGACATGAGAATTCTTG 59.688 38.462 9.87 7.50 46.27 3.02
426 427 6.312180 CGATGTTGAGACATGAGAATTCTTGA 59.688 38.462 9.87 0.00 46.27 3.02
427 428 7.011202 CGATGTTGAGACATGAGAATTCTTGAT 59.989 37.037 9.87 2.32 46.27 2.57
428 429 7.991084 TGTTGAGACATGAGAATTCTTGATT 57.009 32.000 9.87 0.00 33.81 2.57
429 430 8.400184 TGTTGAGACATGAGAATTCTTGATTT 57.600 30.769 9.87 0.00 33.81 2.17
430 431 8.294577 TGTTGAGACATGAGAATTCTTGATTTG 58.705 33.333 9.87 6.05 33.81 2.32
431 432 8.509690 GTTGAGACATGAGAATTCTTGATTTGA 58.490 33.333 9.87 0.00 33.81 2.69
432 433 8.037382 TGAGACATGAGAATTCTTGATTTGAC 57.963 34.615 9.87 4.41 33.81 3.18
433 434 7.069852 AGACATGAGAATTCTTGATTTGACG 57.930 36.000 9.87 0.00 33.81 4.35
434 435 6.652481 AGACATGAGAATTCTTGATTTGACGT 59.348 34.615 9.87 0.00 33.81 4.34
435 436 6.835914 ACATGAGAATTCTTGATTTGACGTC 58.164 36.000 9.87 9.11 33.81 4.34
436 437 6.427853 ACATGAGAATTCTTGATTTGACGTCA 59.572 34.615 15.76 15.76 33.81 4.35
437 438 7.120285 ACATGAGAATTCTTGATTTGACGTCAT 59.880 33.333 20.80 4.97 33.81 3.06
438 439 6.834876 TGAGAATTCTTGATTTGACGTCATG 58.165 36.000 20.80 6.03 0.00 3.07
439 440 6.650390 TGAGAATTCTTGATTTGACGTCATGA 59.350 34.615 20.80 11.82 0.00 3.07
440 441 7.335171 TGAGAATTCTTGATTTGACGTCATGAT 59.665 33.333 20.80 16.22 32.14 2.45
441 442 7.692088 AGAATTCTTGATTTGACGTCATGATC 58.308 34.615 20.80 23.21 32.14 2.92
442 443 5.801350 TTCTTGATTTGACGTCATGATCC 57.199 39.130 26.54 14.53 32.14 3.36
443 444 4.831107 TCTTGATTTGACGTCATGATCCA 58.169 39.130 26.54 19.75 0.00 3.41
444 445 5.430886 TCTTGATTTGACGTCATGATCCAT 58.569 37.500 26.54 12.53 0.00 3.41
445 446 5.295045 TCTTGATTTGACGTCATGATCCATG 59.705 40.000 26.54 19.64 42.60 3.66
446 447 4.768583 TGATTTGACGTCATGATCCATGA 58.231 39.130 26.54 13.88 46.84 3.07
459 460 8.812513 TCATGATCCATGAAAGTTTCTACAAT 57.187 30.769 16.33 5.68 46.17 2.71
460 461 9.246670 TCATGATCCATGAAAGTTTCTACAATT 57.753 29.630 16.33 0.00 46.17 2.32
461 462 9.512435 CATGATCCATGAAAGTTTCTACAATTC 57.488 33.333 16.33 7.39 43.81 2.17
462 463 8.868522 TGATCCATGAAAGTTTCTACAATTCT 57.131 30.769 16.33 0.00 0.00 2.40
463 464 8.733458 TGATCCATGAAAGTTTCTACAATTCTG 58.267 33.333 16.33 2.41 0.00 3.02
464 465 8.641498 ATCCATGAAAGTTTCTACAATTCTGT 57.359 30.769 16.33 0.00 39.75 3.41
465 466 9.739276 ATCCATGAAAGTTTCTACAATTCTGTA 57.261 29.630 16.33 0.00 36.96 2.74
466 467 9.567776 TCCATGAAAGTTTCTACAATTCTGTAA 57.432 29.630 16.33 0.00 37.58 2.41
477 478 7.861630 TCTACAATTCTGTAAAGTTTGACTGC 58.138 34.615 0.00 0.00 37.58 4.40
478 479 6.449635 ACAATTCTGTAAAGTTTGACTGCA 57.550 33.333 0.00 0.00 32.54 4.41
479 480 6.862209 ACAATTCTGTAAAGTTTGACTGCAA 58.138 32.000 0.00 0.00 32.54 4.08
480 481 7.491682 ACAATTCTGTAAAGTTTGACTGCAAT 58.508 30.769 0.00 0.00 32.54 3.56
481 482 7.981225 ACAATTCTGTAAAGTTTGACTGCAATT 59.019 29.630 0.00 3.90 32.54 2.32
482 483 8.819974 CAATTCTGTAAAGTTTGACTGCAATTT 58.180 29.630 0.00 0.00 33.25 1.82
483 484 8.947055 ATTCTGTAAAGTTTGACTGCAATTTT 57.053 26.923 0.00 0.00 33.25 1.82
484 485 8.770438 TTCTGTAAAGTTTGACTGCAATTTTT 57.230 26.923 0.00 0.00 33.25 1.94
500 501 3.280920 TTTTTGGCCGTGCATGAAC 57.719 47.368 7.72 0.00 0.00 3.18
501 502 0.461548 TTTTTGGCCGTGCATGAACA 59.538 45.000 7.72 2.78 0.00 3.18
502 503 0.249238 TTTTGGCCGTGCATGAACAC 60.249 50.000 7.72 0.00 37.19 3.32
503 504 1.387295 TTTGGCCGTGCATGAACACA 61.387 50.000 7.72 0.00 40.73 3.72
504 505 1.177895 TTGGCCGTGCATGAACACAT 61.178 50.000 7.72 0.00 40.73 3.21
505 506 1.137404 GGCCGTGCATGAACACATC 59.863 57.895 7.72 0.00 40.73 3.06
506 507 1.585267 GGCCGTGCATGAACACATCA 61.585 55.000 7.72 0.00 43.67 3.07
507 508 0.179181 GCCGTGCATGAACACATCAG 60.179 55.000 7.72 0.00 42.53 2.90
508 509 1.441738 CCGTGCATGAACACATCAGA 58.558 50.000 7.72 0.00 42.53 3.27
509 510 1.805943 CCGTGCATGAACACATCAGAA 59.194 47.619 7.72 0.00 42.53 3.02
510 511 2.413239 CCGTGCATGAACACATCAGAAC 60.413 50.000 7.72 0.00 42.53 3.01
511 512 2.722706 CGTGCATGAACACATCAGAACG 60.723 50.000 4.29 0.00 42.53 3.95
512 513 1.805943 TGCATGAACACATCAGAACGG 59.194 47.619 0.00 0.00 42.53 4.44
513 514 2.076100 GCATGAACACATCAGAACGGA 58.924 47.619 0.00 0.00 42.53 4.69
514 515 2.679837 GCATGAACACATCAGAACGGAT 59.320 45.455 0.00 0.00 42.53 4.18
515 516 3.127548 GCATGAACACATCAGAACGGATT 59.872 43.478 0.00 0.00 42.53 3.01
516 517 4.379813 GCATGAACACATCAGAACGGATTT 60.380 41.667 0.00 0.00 42.53 2.17
517 518 5.702865 CATGAACACATCAGAACGGATTTT 58.297 37.500 0.00 0.00 42.53 1.82
518 519 6.622679 GCATGAACACATCAGAACGGATTTTA 60.623 38.462 0.00 0.00 42.53 1.52
519 520 6.236017 TGAACACATCAGAACGGATTTTAC 57.764 37.500 0.00 0.00 33.04 2.01
520 521 5.760743 TGAACACATCAGAACGGATTTTACA 59.239 36.000 0.00 0.00 33.04 2.41
521 522 6.261158 TGAACACATCAGAACGGATTTTACAA 59.739 34.615 0.00 0.00 33.04 2.41
522 523 6.627395 ACACATCAGAACGGATTTTACAAA 57.373 33.333 0.00 0.00 0.00 2.83
523 524 7.214467 ACACATCAGAACGGATTTTACAAAT 57.786 32.000 0.00 0.00 0.00 2.32
524 525 7.657336 ACACATCAGAACGGATTTTACAAATT 58.343 30.769 0.00 0.00 0.00 1.82
525 526 8.141268 ACACATCAGAACGGATTTTACAAATTT 58.859 29.630 0.00 0.00 0.00 1.82
526 527 9.619316 CACATCAGAACGGATTTTACAAATTTA 57.381 29.630 0.00 0.00 0.00 1.40
527 528 9.840427 ACATCAGAACGGATTTTACAAATTTAG 57.160 29.630 0.00 0.00 0.00 1.85
528 529 9.840427 CATCAGAACGGATTTTACAAATTTAGT 57.160 29.630 0.00 0.00 0.00 2.24
530 531 9.058174 TCAGAACGGATTTTACAAATTTAGTCA 57.942 29.630 0.00 0.00 0.00 3.41
531 532 9.840427 CAGAACGGATTTTACAAATTTAGTCAT 57.160 29.630 0.00 0.00 0.00 3.06
535 536 8.403236 ACGGATTTTACAAATTTAGTCATAGGC 58.597 33.333 0.00 0.00 0.00 3.93
536 537 8.402472 CGGATTTTACAAATTTAGTCATAGGCA 58.598 33.333 0.00 0.00 0.00 4.75
580 581 8.697846 TTGTTCCTTTCAGTATAAGTGTATCG 57.302 34.615 0.00 0.00 0.00 2.92
629 630 6.224584 AGCTTTTTACTAGTGACAGAGAACC 58.775 40.000 5.39 0.00 0.00 3.62
635 636 1.333177 AGTGACAGAGAACCGCTTCT 58.667 50.000 0.00 0.00 39.64 2.85
646 647 0.892358 ACCGCTTCTCGAGGTACACA 60.892 55.000 13.56 0.00 44.63 3.72
684 686 4.021650 AAAAACGACGCGAGCTGA 57.978 50.000 15.93 0.00 0.00 4.26
999 2590 1.738350 GAGAGCGTAGAGTACAGCACA 59.262 52.381 0.00 0.00 33.05 4.57
2310 4055 7.519008 CGTTGAGCTCTTTCAGTGTTTTCTTAT 60.519 37.037 16.19 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.447314 GGCCTGTACGACCCGAAAG 60.447 63.158 0.00 0.00 0.00 2.62
1 2 2.162338 CTGGCCTGTACGACCCGAAA 62.162 60.000 3.32 0.00 0.00 3.46
2 3 2.601067 TGGCCTGTACGACCCGAA 60.601 61.111 3.32 0.00 0.00 4.30
3 4 3.066190 CTGGCCTGTACGACCCGA 61.066 66.667 3.32 0.00 0.00 5.14
4 5 4.814294 GCTGGCCTGTACGACCCG 62.814 72.222 11.69 0.00 0.00 5.28
5 6 4.814294 CGCTGGCCTGTACGACCC 62.814 72.222 11.69 0.00 0.00 4.46
6 7 3.984200 GACGCTGGCCTGTACGACC 62.984 68.421 14.78 4.56 0.00 4.79
7 8 2.506438 GACGCTGGCCTGTACGAC 60.506 66.667 14.78 6.53 0.00 4.34
8 9 2.348104 ATGACGCTGGCCTGTACGA 61.348 57.895 14.78 0.00 0.00 3.43
9 10 2.167219 CATGACGCTGGCCTGTACG 61.167 63.158 11.69 9.57 0.00 3.67
10 11 1.815421 CCATGACGCTGGCCTGTAC 60.815 63.158 11.69 4.03 0.00 2.90
11 12 2.584064 CCATGACGCTGGCCTGTA 59.416 61.111 11.69 0.00 0.00 2.74
12 13 4.415150 CCCATGACGCTGGCCTGT 62.415 66.667 11.69 3.38 34.77 4.00
17 18 3.129502 CTGTGCCCATGACGCTGG 61.130 66.667 0.00 0.00 35.95 4.85
18 19 2.359107 ACTGTGCCCATGACGCTG 60.359 61.111 0.00 0.00 0.00 5.18
19 20 1.826340 TACACTGTGCCCATGACGCT 61.826 55.000 7.90 0.00 0.00 5.07
20 21 1.375396 TACACTGTGCCCATGACGC 60.375 57.895 7.90 0.00 0.00 5.19
21 22 0.037326 AGTACACTGTGCCCATGACG 60.037 55.000 7.90 0.00 0.00 4.35
22 23 1.442769 CAGTACACTGTGCCCATGAC 58.557 55.000 7.90 0.00 39.09 3.06
23 24 0.321564 GCAGTACACTGTGCCCATGA 60.322 55.000 7.90 0.00 45.45 3.07
24 25 1.638388 CGCAGTACACTGTGCCCATG 61.638 60.000 7.90 3.32 45.86 3.66
25 26 1.375908 CGCAGTACACTGTGCCCAT 60.376 57.895 7.90 0.00 45.86 4.00
26 27 2.030412 CGCAGTACACTGTGCCCA 59.970 61.111 7.90 0.00 45.86 5.36
36 37 2.357517 AGCCACAGTGCGCAGTAC 60.358 61.111 19.12 7.97 45.64 2.73
37 38 2.357396 CAGCCACAGTGCGCAGTA 60.357 61.111 19.12 0.00 36.02 2.74
38 39 4.240103 TCAGCCACAGTGCGCAGT 62.240 61.111 12.22 12.72 36.02 4.40
39 40 3.420606 CTCAGCCACAGTGCGCAG 61.421 66.667 12.22 1.57 36.02 5.18
40 41 4.994471 CCTCAGCCACAGTGCGCA 62.994 66.667 5.66 5.66 36.02 6.09
41 42 4.996434 ACCTCAGCCACAGTGCGC 62.996 66.667 0.00 0.00 36.02 6.09
42 43 2.740055 GACCTCAGCCACAGTGCG 60.740 66.667 0.00 0.00 36.02 5.34
43 44 1.670406 CTGACCTCAGCCACAGTGC 60.670 63.158 0.00 0.00 37.15 4.40
44 45 1.004080 CCTGACCTCAGCCACAGTG 60.004 63.158 0.00 0.00 42.47 3.66
45 46 2.219875 CCCTGACCTCAGCCACAGT 61.220 63.158 0.00 0.00 42.47 3.55
46 47 2.667418 CCCTGACCTCAGCCACAG 59.333 66.667 0.00 0.00 42.47 3.66
47 48 3.640407 GCCCTGACCTCAGCCACA 61.640 66.667 0.00 0.00 42.47 4.17
48 49 3.618780 CTGCCCTGACCTCAGCCAC 62.619 68.421 0.00 0.00 42.47 5.01
49 50 3.324930 CTGCCCTGACCTCAGCCA 61.325 66.667 0.00 0.00 42.47 4.75
50 51 4.106925 CCTGCCCTGACCTCAGCC 62.107 72.222 0.00 0.00 42.47 4.85
51 52 4.792804 GCCTGCCCTGACCTCAGC 62.793 72.222 0.00 0.00 42.47 4.26
52 53 2.677289 ATGCCTGCCCTGACCTCAG 61.677 63.158 0.00 0.00 43.40 3.35
53 54 2.611800 ATGCCTGCCCTGACCTCA 60.612 61.111 0.00 0.00 0.00 3.86
54 55 2.124403 CATGCCTGCCCTGACCTC 60.124 66.667 0.00 0.00 0.00 3.85
55 56 3.736224 CCATGCCTGCCCTGACCT 61.736 66.667 0.00 0.00 0.00 3.85
57 58 4.746309 TGCCATGCCTGCCCTGAC 62.746 66.667 0.00 0.00 0.00 3.51
58 59 3.982111 TTGCCATGCCTGCCCTGA 61.982 61.111 0.00 0.00 0.00 3.86
59 60 3.766691 GTTGCCATGCCTGCCCTG 61.767 66.667 0.00 0.00 0.00 4.45
60 61 4.304413 TGTTGCCATGCCTGCCCT 62.304 61.111 0.00 0.00 0.00 5.19
61 62 3.766691 CTGTTGCCATGCCTGCCC 61.767 66.667 0.00 0.00 0.00 5.36
62 63 2.993264 ACTGTTGCCATGCCTGCC 60.993 61.111 0.00 0.00 0.00 4.85
63 64 2.260434 CACTGTTGCCATGCCTGC 59.740 61.111 0.00 0.00 0.00 4.85
64 65 2.260434 GCACTGTTGCCATGCCTG 59.740 61.111 0.00 0.00 43.66 4.85
84 85 3.832720 GAAGATCTCCGGCGAGGCG 62.833 68.421 9.30 12.20 40.77 5.52
85 86 2.028337 GAAGATCTCCGGCGAGGC 59.972 66.667 9.30 0.00 40.77 4.70
86 87 2.731374 GGAAGATCTCCGGCGAGG 59.269 66.667 9.30 0.00 42.97 4.63
93 94 1.068194 CCGTATCGCTGGAAGATCTCC 60.068 57.143 0.00 0.00 45.64 3.71
94 95 1.667467 GCCGTATCGCTGGAAGATCTC 60.667 57.143 0.00 0.00 34.07 2.75
95 96 0.315568 GCCGTATCGCTGGAAGATCT 59.684 55.000 0.00 0.00 34.07 2.75
96 97 0.315568 AGCCGTATCGCTGGAAGATC 59.684 55.000 0.00 0.00 37.82 2.75
97 98 0.315568 GAGCCGTATCGCTGGAAGAT 59.684 55.000 0.00 0.00 39.87 2.40
98 99 1.035385 TGAGCCGTATCGCTGGAAGA 61.035 55.000 0.00 0.00 39.87 2.87
99 100 0.872021 GTGAGCCGTATCGCTGGAAG 60.872 60.000 0.00 0.00 39.87 3.46
100 101 1.141019 GTGAGCCGTATCGCTGGAA 59.859 57.895 0.00 0.00 39.87 3.53
101 102 1.753078 AGTGAGCCGTATCGCTGGA 60.753 57.895 0.00 0.00 39.87 3.86
102 103 2.808315 AGTGAGCCGTATCGCTGG 59.192 61.111 0.00 0.00 39.87 4.85
104 105 0.663688 CTACAGTGAGCCGTATCGCT 59.336 55.000 0.00 0.00 43.42 4.93
105 106 0.935366 GCTACAGTGAGCCGTATCGC 60.935 60.000 0.00 0.00 36.38 4.58
106 107 3.165559 GCTACAGTGAGCCGTATCG 57.834 57.895 0.00 0.00 36.38 2.92
113 114 2.176273 CGGCATGGCTACAGTGAGC 61.176 63.158 18.09 1.28 42.05 4.26
114 115 1.522355 CCGGCATGGCTACAGTGAG 60.522 63.158 18.09 0.00 0.00 3.51
115 116 2.584064 CCGGCATGGCTACAGTGA 59.416 61.111 18.09 0.00 0.00 3.41
124 125 3.690685 TTACGAAGGGCCGGCATGG 62.691 63.158 30.85 17.08 42.50 3.66
125 126 2.124901 TTACGAAGGGCCGGCATG 60.125 61.111 30.85 14.70 0.00 4.06
126 127 2.189521 CTTACGAAGGGCCGGCAT 59.810 61.111 30.85 14.02 0.00 4.40
127 128 4.770874 GCTTACGAAGGGCCGGCA 62.771 66.667 30.85 1.46 0.00 5.69
128 129 4.770874 TGCTTACGAAGGGCCGGC 62.771 66.667 21.18 21.18 0.00 6.13
129 130 2.511600 CTGCTTACGAAGGGCCGG 60.512 66.667 0.00 0.00 0.00 6.13
130 131 2.511600 CCTGCTTACGAAGGGCCG 60.512 66.667 0.00 0.00 31.55 6.13
163 164 4.137872 ATGCGGGGTACGGTCACG 62.138 66.667 0.00 0.00 44.51 4.35
164 165 2.202837 GATGCGGGGTACGGTCAC 60.203 66.667 0.00 0.00 44.51 3.67
165 166 3.829044 CGATGCGGGGTACGGTCA 61.829 66.667 0.00 0.00 44.51 4.02
166 167 2.480610 TACGATGCGGGGTACGGTC 61.481 63.158 0.00 0.00 44.51 4.79
167 168 2.440065 TACGATGCGGGGTACGGT 60.440 61.111 0.00 0.00 44.51 4.83
168 169 2.008268 AAGTACGATGCGGGGTACGG 62.008 60.000 0.00 0.00 42.86 4.02
169 170 0.593263 GAAGTACGATGCGGGGTACG 60.593 60.000 0.00 0.00 42.86 3.67
170 171 0.593263 CGAAGTACGATGCGGGGTAC 60.593 60.000 0.00 3.58 45.77 3.34
171 172 1.031571 ACGAAGTACGATGCGGGGTA 61.032 55.000 0.00 0.00 41.94 3.69
172 173 2.345760 ACGAAGTACGATGCGGGGT 61.346 57.895 0.00 0.00 41.94 4.95
173 174 1.876714 CACGAAGTACGATGCGGGG 60.877 63.158 0.00 0.00 41.61 5.73
174 175 0.248907 ATCACGAAGTACGATGCGGG 60.249 55.000 0.00 0.00 41.61 6.13
175 176 0.846401 CATCACGAAGTACGATGCGG 59.154 55.000 0.00 0.00 41.61 5.69
176 177 1.775770 CTCATCACGAAGTACGATGCG 59.224 52.381 0.00 0.00 41.61 4.73
177 178 2.120232 CCTCATCACGAAGTACGATGC 58.880 52.381 0.00 0.00 41.61 3.91
178 179 2.357952 TCCCTCATCACGAAGTACGATG 59.642 50.000 0.00 2.32 41.61 3.84
179 180 2.619177 CTCCCTCATCACGAAGTACGAT 59.381 50.000 0.00 0.00 41.61 3.73
180 181 2.014857 CTCCCTCATCACGAAGTACGA 58.985 52.381 0.00 0.00 41.61 3.43
181 182 1.065701 CCTCCCTCATCACGAAGTACG 59.934 57.143 0.00 0.00 41.61 3.67
182 183 2.359531 CTCCTCCCTCATCACGAAGTAC 59.640 54.545 0.00 0.00 41.61 2.73
183 184 2.025226 ACTCCTCCCTCATCACGAAGTA 60.025 50.000 0.00 0.00 41.61 2.24
185 186 1.407258 GACTCCTCCCTCATCACGAAG 59.593 57.143 0.00 0.00 0.00 3.79
186 187 1.272480 TGACTCCTCCCTCATCACGAA 60.272 52.381 0.00 0.00 0.00 3.85
187 188 0.331616 TGACTCCTCCCTCATCACGA 59.668 55.000 0.00 0.00 0.00 4.35
188 189 0.457851 GTGACTCCTCCCTCATCACG 59.542 60.000 0.00 0.00 31.19 4.35
189 190 0.457851 CGTGACTCCTCCCTCATCAC 59.542 60.000 0.00 0.00 37.02 3.06
190 191 0.684479 CCGTGACTCCTCCCTCATCA 60.684 60.000 0.00 0.00 0.00 3.07
191 192 1.395826 CCCGTGACTCCTCCCTCATC 61.396 65.000 0.00 0.00 0.00 2.92
192 193 1.381872 CCCGTGACTCCTCCCTCAT 60.382 63.158 0.00 0.00 0.00 2.90
193 194 2.037367 CCCGTGACTCCTCCCTCA 59.963 66.667 0.00 0.00 0.00 3.86
194 195 3.462678 GCCCGTGACTCCTCCCTC 61.463 72.222 0.00 0.00 0.00 4.30
198 199 4.131088 GTCGGCCCGTGACTCCTC 62.131 72.222 1.63 0.00 33.54 3.71
199 200 4.680537 AGTCGGCCCGTGACTCCT 62.681 66.667 1.63 0.00 42.93 3.69
203 204 4.131088 GGAGAGTCGGCCCGTGAC 62.131 72.222 1.63 0.00 36.60 3.67
204 205 4.671590 TGGAGAGTCGGCCCGTGA 62.672 66.667 1.63 0.00 0.00 4.35
205 206 4.135153 CTGGAGAGTCGGCCCGTG 62.135 72.222 1.63 0.00 0.00 4.94
206 207 4.361971 TCTGGAGAGTCGGCCCGT 62.362 66.667 1.63 0.00 0.00 5.28
207 208 3.522731 CTCTGGAGAGTCGGCCCG 61.523 72.222 0.00 0.00 37.40 6.13
222 223 3.520402 CTCCAGAGAGGCCGACTC 58.480 66.667 20.22 20.22 46.98 3.36
235 236 2.454832 CTTCAAGCTGGCGACCTCCA 62.455 60.000 0.00 0.00 34.42 3.86
236 237 1.743252 CTTCAAGCTGGCGACCTCC 60.743 63.158 0.00 0.00 0.00 4.30
237 238 1.004440 ACTTCAAGCTGGCGACCTC 60.004 57.895 0.00 0.00 0.00 3.85
238 239 1.004440 GACTTCAAGCTGGCGACCT 60.004 57.895 0.00 0.00 0.00 3.85
239 240 2.383527 CGACTTCAAGCTGGCGACC 61.384 63.158 0.00 0.00 0.00 4.79
240 241 2.383527 CCGACTTCAAGCTGGCGAC 61.384 63.158 0.00 0.00 0.00 5.19
241 242 2.048222 CCGACTTCAAGCTGGCGA 60.048 61.111 0.00 0.00 0.00 5.54
242 243 3.793144 GCCGACTTCAAGCTGGCG 61.793 66.667 4.83 0.00 35.77 5.69
243 244 1.968540 AAGCCGACTTCAAGCTGGC 60.969 57.895 11.72 11.72 46.07 4.85
244 245 0.886490 ACAAGCCGACTTCAAGCTGG 60.886 55.000 0.00 0.00 36.84 4.85
245 246 0.514691 GACAAGCCGACTTCAAGCTG 59.485 55.000 0.00 0.00 36.84 4.24
246 247 0.394565 AGACAAGCCGACTTCAAGCT 59.605 50.000 0.00 0.00 38.88 3.74
247 248 1.230324 AAGACAAGCCGACTTCAAGC 58.770 50.000 0.00 0.00 32.29 4.01
248 249 3.914312 TCTAAGACAAGCCGACTTCAAG 58.086 45.455 0.00 0.00 32.29 3.02
249 250 3.321111 ACTCTAAGACAAGCCGACTTCAA 59.679 43.478 0.00 0.00 32.29 2.69
250 251 2.891580 ACTCTAAGACAAGCCGACTTCA 59.108 45.455 0.00 0.00 32.29 3.02
251 252 3.503891 GACTCTAAGACAAGCCGACTTC 58.496 50.000 0.00 0.00 32.29 3.01
252 253 2.095161 CGACTCTAAGACAAGCCGACTT 60.095 50.000 0.00 0.00 36.19 3.01
253 254 1.469308 CGACTCTAAGACAAGCCGACT 59.531 52.381 0.00 0.00 0.00 4.18
254 255 1.897641 CGACTCTAAGACAAGCCGAC 58.102 55.000 0.00 0.00 0.00 4.79
255 256 0.170561 GCGACTCTAAGACAAGCCGA 59.829 55.000 0.00 0.00 0.00 5.54
256 257 0.802607 GGCGACTCTAAGACAAGCCG 60.803 60.000 0.00 0.00 33.43 5.52
257 258 0.802607 CGGCGACTCTAAGACAAGCC 60.803 60.000 0.00 0.00 39.68 4.35
258 259 0.109226 ACGGCGACTCTAAGACAAGC 60.109 55.000 16.62 0.00 0.00 4.01
259 260 1.469308 AGACGGCGACTCTAAGACAAG 59.531 52.381 16.62 0.00 0.00 3.16
260 261 1.199327 CAGACGGCGACTCTAAGACAA 59.801 52.381 16.62 0.00 0.00 3.18
261 262 0.803117 CAGACGGCGACTCTAAGACA 59.197 55.000 16.62 0.00 0.00 3.41
262 263 0.099082 CCAGACGGCGACTCTAAGAC 59.901 60.000 16.62 0.00 0.00 3.01
263 264 1.030488 CCCAGACGGCGACTCTAAGA 61.030 60.000 16.62 0.00 0.00 2.10
264 265 1.030488 TCCCAGACGGCGACTCTAAG 61.030 60.000 16.62 0.00 0.00 2.18
265 266 1.001764 TCCCAGACGGCGACTCTAA 60.002 57.895 16.62 0.00 0.00 2.10
266 267 1.748122 GTCCCAGACGGCGACTCTA 60.748 63.158 16.62 0.00 32.60 2.43
267 268 3.063084 GTCCCAGACGGCGACTCT 61.063 66.667 16.62 3.46 32.60 3.24
268 269 3.053849 GAGTCCCAGACGGCGACTC 62.054 68.421 16.62 11.41 44.87 3.36
269 270 3.063084 GAGTCCCAGACGGCGACT 61.063 66.667 16.62 10.89 42.28 4.18
270 271 4.477975 CGAGTCCCAGACGGCGAC 62.478 72.222 16.62 7.87 37.39 5.19
275 276 2.125912 CAAGCCGAGTCCCAGACG 60.126 66.667 0.00 0.00 37.67 4.18
276 277 1.079750 GACAAGCCGAGTCCCAGAC 60.080 63.158 0.00 0.00 0.00 3.51
277 278 0.832135 AAGACAAGCCGAGTCCCAGA 60.832 55.000 0.00 0.00 36.68 3.86
278 279 0.671781 CAAGACAAGCCGAGTCCCAG 60.672 60.000 0.00 0.00 36.68 4.45
279 280 1.371183 CAAGACAAGCCGAGTCCCA 59.629 57.895 0.00 0.00 36.68 4.37
280 281 1.376037 CCAAGACAAGCCGAGTCCC 60.376 63.158 0.00 0.00 36.68 4.46
281 282 1.376037 CCCAAGACAAGCCGAGTCC 60.376 63.158 0.00 0.00 36.68 3.85
282 283 1.376037 CCCCAAGACAAGCCGAGTC 60.376 63.158 0.00 0.00 36.26 3.36
283 284 2.113243 GACCCCAAGACAAGCCGAGT 62.113 60.000 0.00 0.00 0.00 4.18
284 285 1.376037 GACCCCAAGACAAGCCGAG 60.376 63.158 0.00 0.00 0.00 4.63
285 286 2.747686 GACCCCAAGACAAGCCGA 59.252 61.111 0.00 0.00 0.00 5.54
286 287 2.742372 CGACCCCAAGACAAGCCG 60.742 66.667 0.00 0.00 0.00 5.52
287 288 3.056328 GCGACCCCAAGACAAGCC 61.056 66.667 0.00 0.00 0.00 4.35
288 289 3.056328 GGCGACCCCAAGACAAGC 61.056 66.667 0.00 0.00 0.00 4.01
289 290 2.742372 CGGCGACCCCAAGACAAG 60.742 66.667 0.00 0.00 0.00 3.16
290 291 3.524648 GACGGCGACCCCAAGACAA 62.525 63.158 16.62 0.00 0.00 3.18
291 292 3.998672 GACGGCGACCCCAAGACA 61.999 66.667 16.62 0.00 0.00 3.41
292 293 3.692406 AGACGGCGACCCCAAGAC 61.692 66.667 16.62 0.00 0.00 3.01
293 294 3.691342 CAGACGGCGACCCCAAGA 61.691 66.667 16.62 0.00 0.00 3.02
294 295 4.760047 CCAGACGGCGACCCCAAG 62.760 72.222 16.62 0.00 0.00 3.61
299 300 4.131088 GAGTCCCAGACGGCGACC 62.131 72.222 16.62 4.70 37.67 4.79
300 301 4.477975 CGAGTCCCAGACGGCGAC 62.478 72.222 16.62 7.87 37.39 5.19
305 306 4.135153 CAGGCCGAGTCCCAGACG 62.135 72.222 0.00 0.00 37.67 4.18
306 307 2.680352 TCAGGCCGAGTCCCAGAC 60.680 66.667 0.00 0.00 0.00 3.51
307 308 2.363018 CTCAGGCCGAGTCCCAGA 60.363 66.667 14.22 0.00 36.94 3.86
308 309 3.465403 CCTCAGGCCGAGTCCCAG 61.465 72.222 18.94 4.38 40.48 4.45
331 332 4.115199 AAGACATCGGGGCAGGCC 62.115 66.667 3.77 3.77 0.00 5.19
332 333 2.819984 TTCAAGACATCGGGGCAGGC 62.820 60.000 0.00 0.00 0.00 4.85
333 334 0.322456 TTTCAAGACATCGGGGCAGG 60.322 55.000 0.00 0.00 0.00 4.85
334 335 1.089920 CTTTCAAGACATCGGGGCAG 58.910 55.000 0.00 0.00 0.00 4.85
335 336 0.322456 CCTTTCAAGACATCGGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
336 337 0.322546 ACCTTTCAAGACATCGGGGC 60.323 55.000 0.00 0.00 0.00 5.80
337 338 1.679032 GGACCTTTCAAGACATCGGGG 60.679 57.143 0.00 0.00 0.00 5.73
338 339 1.279271 AGGACCTTTCAAGACATCGGG 59.721 52.381 0.00 0.00 0.00 5.14
339 340 2.350522 CAGGACCTTTCAAGACATCGG 58.649 52.381 0.00 0.00 0.00 4.18
340 341 2.350522 CCAGGACCTTTCAAGACATCG 58.649 52.381 0.00 0.00 0.00 3.84
341 342 2.305927 TCCCAGGACCTTTCAAGACATC 59.694 50.000 0.00 0.00 0.00 3.06
342 343 2.040412 GTCCCAGGACCTTTCAAGACAT 59.960 50.000 5.46 0.00 39.08 3.06
343 344 1.420138 GTCCCAGGACCTTTCAAGACA 59.580 52.381 5.46 0.00 39.08 3.41
344 345 1.420138 TGTCCCAGGACCTTTCAAGAC 59.580 52.381 14.19 0.00 43.97 3.01
345 346 1.420138 GTGTCCCAGGACCTTTCAAGA 59.580 52.381 14.19 0.00 43.97 3.02
346 347 1.878102 CGTGTCCCAGGACCTTTCAAG 60.878 57.143 14.19 0.00 43.97 3.02
347 348 0.107831 CGTGTCCCAGGACCTTTCAA 59.892 55.000 14.19 0.00 43.97 2.69
348 349 1.752198 CGTGTCCCAGGACCTTTCA 59.248 57.895 14.19 0.00 43.97 2.69
349 350 1.003718 CCGTGTCCCAGGACCTTTC 60.004 63.158 14.19 2.15 43.97 2.62
350 351 2.526046 CCCGTGTCCCAGGACCTTT 61.526 63.158 14.19 0.00 43.97 3.11
351 352 2.928396 CCCGTGTCCCAGGACCTT 60.928 66.667 14.19 0.00 43.97 3.50
352 353 2.390777 TAACCCGTGTCCCAGGACCT 62.391 60.000 14.19 0.00 43.97 3.85
353 354 1.896122 CTAACCCGTGTCCCAGGACC 61.896 65.000 14.19 5.01 43.97 4.46
354 355 1.595357 CTAACCCGTGTCCCAGGAC 59.405 63.158 10.02 10.02 44.77 3.85
355 356 2.288025 GCTAACCCGTGTCCCAGGA 61.288 63.158 0.00 0.00 0.00 3.86
356 357 2.267961 GCTAACCCGTGTCCCAGG 59.732 66.667 0.00 0.00 0.00 4.45
357 358 0.974010 TAGGCTAACCCGTGTCCCAG 60.974 60.000 0.00 0.00 39.21 4.45
358 359 1.078891 TAGGCTAACCCGTGTCCCA 59.921 57.895 0.00 0.00 39.21 4.37
359 360 1.519246 GTAGGCTAACCCGTGTCCC 59.481 63.158 0.00 0.00 39.21 4.46
360 361 1.519246 GGTAGGCTAACCCGTGTCC 59.481 63.158 0.00 0.00 39.21 4.02
373 374 1.147600 GTAATGGGCCACGGGTAGG 59.852 63.158 9.28 0.00 0.00 3.18
374 375 0.106149 GAGTAATGGGCCACGGGTAG 59.894 60.000 9.28 0.00 0.00 3.18
375 376 1.339644 GGAGTAATGGGCCACGGGTA 61.340 60.000 9.28 0.00 0.00 3.69
376 377 2.676265 GGAGTAATGGGCCACGGGT 61.676 63.158 9.28 0.00 0.00 5.28
377 378 2.192175 GGAGTAATGGGCCACGGG 59.808 66.667 9.28 0.00 0.00 5.28
378 379 2.203015 CGGAGTAATGGGCCACGG 60.203 66.667 9.28 0.00 0.00 4.94
379 380 1.520787 GTCGGAGTAATGGGCCACG 60.521 63.158 9.28 7.06 0.00 4.94
380 381 0.462047 CTGTCGGAGTAATGGGCCAC 60.462 60.000 9.28 0.00 0.00 5.01
381 382 0.907704 ACTGTCGGAGTAATGGGCCA 60.908 55.000 9.61 9.61 30.86 5.36
382 383 0.179081 GACTGTCGGAGTAATGGGCC 60.179 60.000 0.00 0.00 33.83 5.80
383 384 0.527817 CGACTGTCGGAGTAATGGGC 60.528 60.000 21.78 0.00 36.00 5.36
384 385 1.100510 TCGACTGTCGGAGTAATGGG 58.899 55.000 27.69 0.00 40.88 4.00
385 386 2.099263 ACATCGACTGTCGGAGTAATGG 59.901 50.000 27.69 11.93 40.88 3.16
386 387 3.422417 ACATCGACTGTCGGAGTAATG 57.578 47.619 27.69 23.53 40.88 1.90
387 388 3.442625 TCAACATCGACTGTCGGAGTAAT 59.557 43.478 27.69 12.30 40.88 1.89
388 389 2.815503 TCAACATCGACTGTCGGAGTAA 59.184 45.455 27.69 10.47 40.88 2.24
389 390 2.418976 CTCAACATCGACTGTCGGAGTA 59.581 50.000 27.69 10.84 40.88 2.59
390 391 1.200252 CTCAACATCGACTGTCGGAGT 59.800 52.381 27.69 22.31 40.88 3.85
391 392 1.468914 TCTCAACATCGACTGTCGGAG 59.531 52.381 27.69 23.41 40.88 4.63
392 393 1.199327 GTCTCAACATCGACTGTCGGA 59.801 52.381 27.69 16.19 40.88 4.55
393 394 1.068541 TGTCTCAACATCGACTGTCGG 60.069 52.381 27.69 16.22 40.88 4.79
394 395 2.331809 TGTCTCAACATCGACTGTCG 57.668 50.000 23.33 23.33 42.10 4.35
395 396 3.838120 TCATGTCTCAACATCGACTGTC 58.162 45.455 0.00 0.00 44.41 3.51
396 397 3.507622 TCTCATGTCTCAACATCGACTGT 59.492 43.478 0.00 0.00 44.41 3.55
397 398 4.102035 TCTCATGTCTCAACATCGACTG 57.898 45.455 0.00 0.00 44.41 3.51
398 399 4.790765 TTCTCATGTCTCAACATCGACT 57.209 40.909 0.00 0.00 44.41 4.18
399 400 5.809562 AGAATTCTCATGTCTCAACATCGAC 59.190 40.000 0.88 0.00 44.41 4.20
400 401 5.970592 AGAATTCTCATGTCTCAACATCGA 58.029 37.500 0.88 0.00 44.41 3.59
401 402 6.312180 TCAAGAATTCTCATGTCTCAACATCG 59.688 38.462 8.78 0.00 44.41 3.84
402 403 7.606858 TCAAGAATTCTCATGTCTCAACATC 57.393 36.000 8.78 0.00 44.41 3.06
404 405 7.991084 AATCAAGAATTCTCATGTCTCAACA 57.009 32.000 8.78 0.00 40.38 3.33
405 406 8.509690 TCAAATCAAGAATTCTCATGTCTCAAC 58.490 33.333 8.78 0.00 0.00 3.18
406 407 8.509690 GTCAAATCAAGAATTCTCATGTCTCAA 58.490 33.333 8.78 0.00 0.00 3.02
407 408 7.148523 CGTCAAATCAAGAATTCTCATGTCTCA 60.149 37.037 8.78 0.00 0.00 3.27
408 409 7.148507 ACGTCAAATCAAGAATTCTCATGTCTC 60.149 37.037 8.78 0.00 0.00 3.36
409 410 6.652481 ACGTCAAATCAAGAATTCTCATGTCT 59.348 34.615 8.78 0.00 0.00 3.41
410 411 6.835914 ACGTCAAATCAAGAATTCTCATGTC 58.164 36.000 8.78 1.74 0.00 3.06
411 412 6.427853 TGACGTCAAATCAAGAATTCTCATGT 59.572 34.615 17.62 0.00 0.00 3.21
412 413 6.834876 TGACGTCAAATCAAGAATTCTCATG 58.165 36.000 17.62 4.55 0.00 3.07
413 414 7.335171 TCATGACGTCAAATCAAGAATTCTCAT 59.665 33.333 24.13 1.15 0.00 2.90
414 415 6.650390 TCATGACGTCAAATCAAGAATTCTCA 59.350 34.615 24.13 0.00 0.00 3.27
415 416 7.065216 TCATGACGTCAAATCAAGAATTCTC 57.935 36.000 24.13 0.00 0.00 2.87
416 417 7.201679 GGATCATGACGTCAAATCAAGAATTCT 60.202 37.037 29.96 0.88 28.50 2.40
417 418 6.909357 GGATCATGACGTCAAATCAAGAATTC 59.091 38.462 29.96 16.34 28.50 2.17
418 419 6.375174 TGGATCATGACGTCAAATCAAGAATT 59.625 34.615 29.96 9.97 28.50 2.17
419 420 5.882000 TGGATCATGACGTCAAATCAAGAAT 59.118 36.000 29.96 14.97 28.50 2.40
420 421 5.244755 TGGATCATGACGTCAAATCAAGAA 58.755 37.500 29.96 17.63 28.50 2.52
421 422 4.831107 TGGATCATGACGTCAAATCAAGA 58.169 39.130 29.96 19.43 0.00 3.02
422 423 5.295045 TCATGGATCATGACGTCAAATCAAG 59.705 40.000 29.96 22.50 44.60 3.02
423 424 5.184711 TCATGGATCATGACGTCAAATCAA 58.815 37.500 29.96 24.71 44.60 2.57
424 425 4.768583 TCATGGATCATGACGTCAAATCA 58.231 39.130 29.96 21.29 44.60 2.57
435 436 9.512435 GAATTGTAGAAACTTTCATGGATCATG 57.488 33.333 4.34 1.76 42.60 3.07
436 437 9.471702 AGAATTGTAGAAACTTTCATGGATCAT 57.528 29.630 4.34 0.00 0.00 2.45
437 438 8.733458 CAGAATTGTAGAAACTTTCATGGATCA 58.267 33.333 4.34 0.00 0.00 2.92
438 439 8.734386 ACAGAATTGTAGAAACTTTCATGGATC 58.266 33.333 4.34 0.00 35.25 3.36
439 440 8.641498 ACAGAATTGTAGAAACTTTCATGGAT 57.359 30.769 4.34 0.00 35.25 3.41
440 441 9.567776 TTACAGAATTGTAGAAACTTTCATGGA 57.432 29.630 4.34 0.00 40.68 3.41
451 452 8.342634 GCAGTCAAACTTTACAGAATTGTAGAA 58.657 33.333 0.00 0.00 40.68 2.10
452 453 7.497579 TGCAGTCAAACTTTACAGAATTGTAGA 59.502 33.333 0.00 0.00 40.68 2.59
453 454 7.639039 TGCAGTCAAACTTTACAGAATTGTAG 58.361 34.615 0.00 0.00 40.68 2.74
454 455 7.561021 TGCAGTCAAACTTTACAGAATTGTA 57.439 32.000 0.00 0.00 38.76 2.41
455 456 6.449635 TGCAGTCAAACTTTACAGAATTGT 57.550 33.333 0.00 0.00 41.39 2.71
456 457 7.935338 ATTGCAGTCAAACTTTACAGAATTG 57.065 32.000 0.00 0.00 35.56 2.32
457 458 8.947055 AAATTGCAGTCAAACTTTACAGAATT 57.053 26.923 0.00 0.00 35.56 2.17
458 459 8.947055 AAAATTGCAGTCAAACTTTACAGAAT 57.053 26.923 0.00 0.00 35.56 2.40
459 460 8.770438 AAAAATTGCAGTCAAACTTTACAGAA 57.230 26.923 0.00 0.00 35.56 3.02
482 483 0.461548 TGTTCATGCACGGCCAAAAA 59.538 45.000 2.24 0.00 0.00 1.94
483 484 0.249238 GTGTTCATGCACGGCCAAAA 60.249 50.000 2.24 0.00 0.00 2.44
484 485 1.361993 GTGTTCATGCACGGCCAAA 59.638 52.632 2.24 0.00 0.00 3.28
485 486 1.177895 ATGTGTTCATGCACGGCCAA 61.178 50.000 2.24 0.00 41.94 4.52
486 487 1.585267 GATGTGTTCATGCACGGCCA 61.585 55.000 2.24 0.00 41.94 5.36
487 488 1.137404 GATGTGTTCATGCACGGCC 59.863 57.895 0.00 0.00 41.94 6.13
488 489 0.179181 CTGATGTGTTCATGCACGGC 60.179 55.000 0.00 0.00 41.94 5.68
489 490 1.441738 TCTGATGTGTTCATGCACGG 58.558 50.000 0.00 0.00 41.94 4.94
490 491 2.722706 CGTTCTGATGTGTTCATGCACG 60.723 50.000 0.00 0.00 41.94 5.34
491 492 2.413239 CCGTTCTGATGTGTTCATGCAC 60.413 50.000 0.00 0.00 39.65 4.57
492 493 1.805943 CCGTTCTGATGTGTTCATGCA 59.194 47.619 0.00 0.00 34.06 3.96
493 494 2.076100 TCCGTTCTGATGTGTTCATGC 58.924 47.619 0.00 0.00 34.06 4.06
494 495 4.952262 AATCCGTTCTGATGTGTTCATG 57.048 40.909 0.00 0.00 34.06 3.07
495 496 5.964958 AAAATCCGTTCTGATGTGTTCAT 57.035 34.783 0.00 0.00 36.95 2.57
496 497 5.760743 TGTAAAATCCGTTCTGATGTGTTCA 59.239 36.000 0.00 0.00 0.00 3.18
497 498 6.236017 TGTAAAATCCGTTCTGATGTGTTC 57.764 37.500 0.00 0.00 0.00 3.18
498 499 6.627395 TTGTAAAATCCGTTCTGATGTGTT 57.373 33.333 0.00 0.00 0.00 3.32
499 500 6.627395 TTTGTAAAATCCGTTCTGATGTGT 57.373 33.333 0.00 0.00 0.00 3.72
500 501 8.519492 AAATTTGTAAAATCCGTTCTGATGTG 57.481 30.769 0.00 0.00 0.00 3.21
501 502 9.840427 CTAAATTTGTAAAATCCGTTCTGATGT 57.160 29.630 0.00 0.00 0.00 3.06
502 503 9.840427 ACTAAATTTGTAAAATCCGTTCTGATG 57.160 29.630 0.00 0.00 0.00 3.07
504 505 9.058174 TGACTAAATTTGTAAAATCCGTTCTGA 57.942 29.630 0.00 0.00 0.00 3.27
505 506 9.840427 ATGACTAAATTTGTAAAATCCGTTCTG 57.160 29.630 0.00 0.00 0.00 3.02
509 510 8.403236 GCCTATGACTAAATTTGTAAAATCCGT 58.597 33.333 0.00 0.00 0.00 4.69
510 511 8.402472 TGCCTATGACTAAATTTGTAAAATCCG 58.598 33.333 0.00 0.00 0.00 4.18
554 555 9.314321 CGATACACTTATACTGAAAGGAACAAT 57.686 33.333 0.00 0.00 39.30 2.71
559 560 7.555195 TCAGACGATACACTTATACTGAAAGGA 59.445 37.037 0.00 0.00 39.30 3.36
561 562 8.613482 TCTCAGACGATACACTTATACTGAAAG 58.387 37.037 0.00 0.00 42.29 2.62
591 592 2.520686 AAAGCTTGCACGCGTAATAC 57.479 45.000 13.44 2.14 34.40 1.89
629 630 0.240145 TGTGTGTACCTCGAGAAGCG 59.760 55.000 15.71 0.00 42.69 4.68
635 636 1.611977 CTGGTCTTGTGTGTACCTCGA 59.388 52.381 0.00 0.00 34.23 4.04
646 647 2.651361 CGCGTCTCCTGGTCTTGT 59.349 61.111 0.00 0.00 0.00 3.16
684 686 3.503827 TTCATAACGATCTCAGTGCGT 57.496 42.857 0.00 0.00 40.35 5.24
999 2590 1.672854 TACGAGTGCTAGGCGCCATT 61.673 55.000 31.54 12.06 40.23 3.16
2310 4055 7.227910 GGCATATTAAAAGATCGAACAGGGTTA 59.772 37.037 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.