Multiple sequence alignment - TraesCS5B01G475600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G475600 chr5B 100.000 3094 0 0 1 3094 648279355 648282448 0.000000e+00 5714.0
1 TraesCS5B01G475600 chr5B 86.021 1724 102 46 780 2434 648616020 648614367 0.000000e+00 1720.0
2 TraesCS5B01G475600 chr5B 88.288 999 78 21 319 1284 648331103 648332095 0.000000e+00 1160.0
3 TraesCS5B01G475600 chr5B 79.204 553 83 18 2423 2974 648613427 648612906 3.790000e-94 355.0
4 TraesCS5B01G475600 chr5B 91.176 204 15 3 1 202 594099183 594098981 1.090000e-69 274.0
5 TraesCS5B01G475600 chr5B 85.514 214 31 0 2631 2844 325067376 325067163 1.120000e-54 224.0
6 TraesCS5B01G475600 chr5B 93.220 59 3 1 2574 2632 513708518 513708461 5.500000e-13 86.1
7 TraesCS5B01G475600 chr5A 88.770 2342 160 44 282 2544 643916845 643919162 0.000000e+00 2772.0
8 TraesCS5B01G475600 chr5A 86.057 459 64 0 2636 3094 643919212 643919670 7.710000e-136 494.0
9 TraesCS5B01G475600 chr5A 90.270 185 18 0 1 185 623008692 623008876 3.080000e-60 243.0
10 TraesCS5B01G475600 chr5D 87.500 2480 198 60 184 2573 515666720 515669177 0.000000e+00 2760.0
11 TraesCS5B01G475600 chr5D 93.503 354 21 2 2742 3094 515669346 515669698 2.730000e-145 525.0
12 TraesCS5B01G475600 chr5D 95.000 100 5 0 2572 2671 515669218 515669317 1.150000e-34 158.0
13 TraesCS5B01G475600 chr5D 90.476 63 2 1 2574 2632 330709247 330709185 2.560000e-11 80.5
14 TraesCS5B01G475600 chr5D 90.476 63 2 2 2574 2632 350371886 350371824 2.560000e-11 80.5
15 TraesCS5B01G475600 chr2A 90.052 191 17 2 1 190 747680964 747681153 2.380000e-61 246.0
16 TraesCS5B01G475600 chr2A 93.220 59 4 0 2574 2632 752273681 752273739 1.530000e-13 87.9
17 TraesCS5B01G475600 chr7B 88.000 200 24 0 2631 2830 401548045 401548244 1.430000e-58 237.0
18 TraesCS5B01G475600 chr6A 86.449 214 29 0 2631 2844 381088850 381089063 5.160000e-58 235.0
19 TraesCS5B01G475600 chr6A 92.308 65 2 1 2573 2634 552743016 552742952 4.250000e-14 89.8
20 TraesCS5B01G475600 chr2B 91.617 167 14 0 22 188 338749631 338749465 6.670000e-57 231.0
21 TraesCS5B01G475600 chr4B 90.751 173 14 1 15 185 22899216 22899044 2.400000e-56 230.0
22 TraesCS5B01G475600 chr2D 86.829 205 27 0 2639 2843 310306234 310306438 2.400000e-56 230.0
23 TraesCS5B01G475600 chr2D 85.581 215 29 2 2631 2844 68513128 68512915 1.120000e-54 224.0
24 TraesCS5B01G475600 chr2D 91.411 163 12 2 42 204 155439858 155440018 4.020000e-54 222.0
25 TraesCS5B01G475600 chr3D 91.515 165 14 0 21 185 376343407 376343571 8.630000e-56 228.0
26 TraesCS5B01G475600 chr3D 92.405 158 12 0 40 197 105119325 105119482 3.100000e-55 226.0
27 TraesCS5B01G475600 chr6B 85.253 217 32 0 2631 2847 368473405 368473189 1.120000e-54 224.0
28 TraesCS5B01G475600 chr4D 85.849 212 29 1 2636 2847 346468036 346467826 1.120000e-54 224.0
29 TraesCS5B01G475600 chr4D 92.308 156 12 0 33 188 77835622 77835467 4.020000e-54 222.0
30 TraesCS5B01G475600 chr4D 88.710 62 3 1 2573 2634 323102033 323102090 4.280000e-09 73.1
31 TraesCS5B01G475600 chr1D 85.514 214 31 0 2631 2844 138276244 138276031 1.120000e-54 224.0
32 TraesCS5B01G475600 chr1D 88.333 60 2 1 2574 2633 472562653 472562707 1.990000e-07 67.6
33 TraesCS5B01G475600 chr1B 89.831 59 4 1 2574 2632 355296485 355296429 1.190000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G475600 chr5B 648279355 648282448 3093 False 5714.000000 5714 100.0000 1 3094 1 chr5B.!!$F1 3093
1 TraesCS5B01G475600 chr5B 648331103 648332095 992 False 1160.000000 1160 88.2880 319 1284 1 chr5B.!!$F2 965
2 TraesCS5B01G475600 chr5B 648612906 648616020 3114 True 1037.500000 1720 82.6125 780 2974 2 chr5B.!!$R4 2194
3 TraesCS5B01G475600 chr5A 643916845 643919670 2825 False 1633.000000 2772 87.4135 282 3094 2 chr5A.!!$F2 2812
4 TraesCS5B01G475600 chr5D 515666720 515669698 2978 False 1147.666667 2760 92.0010 184 3094 3 chr5D.!!$F1 2910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 955 0.108585 TGCGCATCTAATTCCCCTCC 59.891 55.0 5.66 0.0 0.00 4.30 F
1366 1453 0.320247 CAGGGACGAGATGCATAGGC 60.320 60.0 0.00 0.0 41.68 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1944 0.674895 ACAGACGCAGAATTCCAGGC 60.675 55.000 0.65 3.1 0.00 4.85 R
2740 3867 1.001641 AGCGCAGGCCTTCAGAAAT 60.002 52.632 11.47 0.0 41.24 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.994429 AGTACAAAGTTGAGTCATCTATTCTG 57.006 34.615 4.14 3.46 0.00 3.02
27 28 8.037758 AGTACAAAGTTGAGTCATCTATTCTGG 58.962 37.037 4.14 0.00 0.00 3.86
28 29 7.009179 ACAAAGTTGAGTCATCTATTCTGGA 57.991 36.000 4.14 0.00 0.00 3.86
29 30 7.453393 ACAAAGTTGAGTCATCTATTCTGGAA 58.547 34.615 4.14 0.00 0.00 3.53
30 31 7.389053 ACAAAGTTGAGTCATCTATTCTGGAAC 59.611 37.037 4.14 0.00 0.00 3.62
31 32 5.655488 AGTTGAGTCATCTATTCTGGAACG 58.345 41.667 1.70 0.00 0.00 3.95
32 33 4.655762 TGAGTCATCTATTCTGGAACGG 57.344 45.455 0.00 0.00 0.00 4.44
33 34 4.278310 TGAGTCATCTATTCTGGAACGGA 58.722 43.478 0.00 0.00 45.11 4.69
43 44 3.675348 TCTGGAACGGAGGGAGTATAA 57.325 47.619 0.00 0.00 39.80 0.98
44 45 3.563223 TCTGGAACGGAGGGAGTATAAG 58.437 50.000 0.00 0.00 39.80 1.73
45 46 3.053095 TCTGGAACGGAGGGAGTATAAGT 60.053 47.826 0.00 0.00 39.80 2.24
46 47 3.294214 TGGAACGGAGGGAGTATAAGTC 58.706 50.000 0.00 0.00 0.00 3.01
47 48 3.053095 TGGAACGGAGGGAGTATAAGTCT 60.053 47.826 0.00 0.00 0.00 3.24
48 49 3.959449 GGAACGGAGGGAGTATAAGTCTT 59.041 47.826 0.00 0.00 0.00 3.01
49 50 4.405036 GGAACGGAGGGAGTATAAGTCTTT 59.595 45.833 0.00 0.00 0.00 2.52
50 51 5.105023 GGAACGGAGGGAGTATAAGTCTTTT 60.105 44.000 0.00 0.00 0.00 2.27
51 52 6.370186 AACGGAGGGAGTATAAGTCTTTTT 57.630 37.500 0.00 0.00 0.00 1.94
52 53 7.364144 GGAACGGAGGGAGTATAAGTCTTTTTA 60.364 40.741 0.00 0.00 0.00 1.52
53 54 7.110043 ACGGAGGGAGTATAAGTCTTTTTAG 57.890 40.000 0.00 0.00 0.00 1.85
54 55 6.894103 ACGGAGGGAGTATAAGTCTTTTTAGA 59.106 38.462 0.00 0.00 0.00 2.10
55 56 7.147932 ACGGAGGGAGTATAAGTCTTTTTAGAC 60.148 40.741 0.00 0.00 39.00 2.59
56 57 7.147949 CGGAGGGAGTATAAGTCTTTTTAGACA 60.148 40.741 7.92 0.00 41.02 3.41
57 58 8.706521 GGAGGGAGTATAAGTCTTTTTAGACAT 58.293 37.037 7.92 0.00 41.02 3.06
68 69 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
69 70 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
75 76 9.567776 TTTAGACATTTCAAATGGACTACAAGA 57.432 29.630 14.70 1.25 0.00 3.02
76 77 9.739276 TTAGACATTTCAAATGGACTACAAGAT 57.261 29.630 14.70 0.00 0.00 2.40
78 79 9.167311 AGACATTTCAAATGGACTACAAGATAC 57.833 33.333 14.70 0.00 0.00 2.24
79 80 7.974675 ACATTTCAAATGGACTACAAGATACG 58.025 34.615 14.70 0.00 0.00 3.06
80 81 6.978343 TTTCAAATGGACTACAAGATACGG 57.022 37.500 0.00 0.00 0.00 4.02
81 82 5.925506 TCAAATGGACTACAAGATACGGA 57.074 39.130 0.00 0.00 0.00 4.69
82 83 6.479972 TCAAATGGACTACAAGATACGGAT 57.520 37.500 0.00 0.00 0.00 4.18
83 84 6.280643 TCAAATGGACTACAAGATACGGATG 58.719 40.000 0.00 0.00 0.00 3.51
84 85 5.871396 AATGGACTACAAGATACGGATGT 57.129 39.130 0.00 0.00 0.00 3.06
85 86 6.971726 AATGGACTACAAGATACGGATGTA 57.028 37.500 0.00 0.00 34.45 2.29
86 87 7.540474 AATGGACTACAAGATACGGATGTAT 57.460 36.000 0.00 0.00 43.97 2.29
87 88 6.327279 TGGACTACAAGATACGGATGTATG 57.673 41.667 0.00 0.00 41.37 2.39
88 89 5.831525 TGGACTACAAGATACGGATGTATGT 59.168 40.000 0.00 0.00 41.37 2.29
89 90 6.999871 TGGACTACAAGATACGGATGTATGTA 59.000 38.462 0.00 0.00 41.37 2.29
90 91 7.174426 TGGACTACAAGATACGGATGTATGTAG 59.826 40.741 17.68 17.68 42.27 2.74
91 92 7.174599 GGACTACAAGATACGGATGTATGTAGT 59.825 40.741 21.66 21.66 46.94 2.73
92 93 8.097078 ACTACAAGATACGGATGTATGTAGTC 57.903 38.462 18.53 0.00 44.12 2.59
93 94 6.954487 ACAAGATACGGATGTATGTAGTCA 57.046 37.500 0.00 0.00 41.37 3.41
94 95 7.526142 ACAAGATACGGATGTATGTAGTCAT 57.474 36.000 0.00 0.00 41.37 3.06
95 96 8.631480 ACAAGATACGGATGTATGTAGTCATA 57.369 34.615 0.00 0.00 41.37 2.15
96 97 9.244292 ACAAGATACGGATGTATGTAGTCATAT 57.756 33.333 0.00 0.00 41.37 1.78
126 127 8.203485 AGAATGTAGATTCTCTCATCTTGTTCC 58.797 37.037 9.25 0.00 44.30 3.62
127 128 5.895928 TGTAGATTCTCTCATCTTGTTCCG 58.104 41.667 0.00 0.00 35.08 4.30
128 129 5.419155 TGTAGATTCTCTCATCTTGTTCCGT 59.581 40.000 0.00 0.00 35.08 4.69
129 130 6.602009 TGTAGATTCTCTCATCTTGTTCCGTA 59.398 38.462 0.00 0.00 35.08 4.02
130 131 6.723298 AGATTCTCTCATCTTGTTCCGTAT 57.277 37.500 0.00 0.00 28.19 3.06
131 132 6.511416 AGATTCTCTCATCTTGTTCCGTATG 58.489 40.000 0.00 0.00 28.19 2.39
132 133 5.661056 TTCTCTCATCTTGTTCCGTATGT 57.339 39.130 0.00 0.00 0.00 2.29
133 134 6.769134 TTCTCTCATCTTGTTCCGTATGTA 57.231 37.500 0.00 0.00 0.00 2.29
134 135 6.378710 TCTCTCATCTTGTTCCGTATGTAG 57.621 41.667 0.00 0.00 0.00 2.74
135 136 5.886474 TCTCTCATCTTGTTCCGTATGTAGT 59.114 40.000 0.00 0.00 0.00 2.73
136 137 6.038382 TCTCTCATCTTGTTCCGTATGTAGTC 59.962 42.308 0.00 0.00 0.00 2.59
137 138 5.650703 TCTCATCTTGTTCCGTATGTAGTCA 59.349 40.000 0.00 0.00 0.00 3.41
138 139 5.647589 TCATCTTGTTCCGTATGTAGTCAC 58.352 41.667 0.00 0.00 0.00 3.67
139 140 5.417894 TCATCTTGTTCCGTATGTAGTCACT 59.582 40.000 0.00 0.00 0.00 3.41
140 141 5.717078 TCTTGTTCCGTATGTAGTCACTT 57.283 39.130 0.00 0.00 0.00 3.16
141 142 5.466819 TCTTGTTCCGTATGTAGTCACTTG 58.533 41.667 0.00 0.00 0.00 3.16
142 143 4.859304 TGTTCCGTATGTAGTCACTTGT 57.141 40.909 0.00 0.00 0.00 3.16
143 144 5.204409 TGTTCCGTATGTAGTCACTTGTT 57.796 39.130 0.00 0.00 0.00 2.83
144 145 4.986034 TGTTCCGTATGTAGTCACTTGTTG 59.014 41.667 0.00 0.00 0.00 3.33
145 146 5.221283 TGTTCCGTATGTAGTCACTTGTTGA 60.221 40.000 0.00 0.00 0.00 3.18
146 147 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
147 148 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
148 149 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
149 150 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
150 151 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
151 152 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
152 153 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
153 154 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
155 156 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
156 157 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
159 160 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
160 161 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
161 162 9.396022 TCACTTGTTGAAATCTCTAAAAAGACT 57.604 29.630 0.00 0.00 0.00 3.24
176 177 9.169592 TCTAAAAAGACTTATATTTGGGAACGG 57.830 33.333 0.00 0.00 0.00 4.44
177 178 9.169592 CTAAAAAGACTTATATTTGGGAACGGA 57.830 33.333 0.00 0.00 0.00 4.69
178 179 7.625828 AAAAGACTTATATTTGGGAACGGAG 57.374 36.000 0.00 0.00 0.00 4.63
179 180 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
180 181 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
181 182 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
182 183 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
186 187 0.178926 TTGGGAACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
191 192 0.907704 AACGGAGGGAGTACATGCCA 60.908 55.000 0.00 0.00 43.31 4.92
221 223 9.840427 ACTAAATTTGTAAAATCGGTTCTGATG 57.160 29.630 0.00 0.00 0.00 3.07
230 232 2.076100 TCGGTTCTGATGTGTTCATGC 58.924 47.619 0.00 0.00 34.06 4.06
240 242 0.939106 GTGTTCATGCACGGCCAAAC 60.939 55.000 2.24 0.00 0.00 2.93
244 246 0.461548 TCATGCACGGCCAAACAAAA 59.538 45.000 2.24 0.00 0.00 2.44
245 247 1.069823 TCATGCACGGCCAAACAAAAT 59.930 42.857 2.24 0.00 0.00 1.82
256 258 5.276631 CGGCCAAACAAAATTGTAGTCAAAC 60.277 40.000 2.24 0.00 41.31 2.93
309 319 1.370064 CGTCAAGTCGGGGGTTCTT 59.630 57.895 0.00 0.00 0.00 2.52
343 353 2.064014 GACCGAGAAACAAGTAACCCG 58.936 52.381 0.00 0.00 0.00 5.28
369 379 5.758296 AGACGACTCAAAATTAGCAGACAAA 59.242 36.000 0.00 0.00 0.00 2.83
385 395 3.947834 AGACAAATATAGTTGTGCAGCCC 59.052 43.478 22.20 7.55 41.78 5.19
390 400 2.584835 ATAGTTGTGCAGCCCTTTGA 57.415 45.000 0.00 0.00 0.00 2.69
402 412 3.512724 CAGCCCTTTGATGGTTGAGATTT 59.487 43.478 0.00 0.00 36.29 2.17
417 427 5.545658 TGAGATTTATGGAGCGTGTTTTC 57.454 39.130 0.00 0.00 0.00 2.29
419 429 5.705441 TGAGATTTATGGAGCGTGTTTTCTT 59.295 36.000 0.00 0.00 0.00 2.52
427 437 3.796717 GGAGCGTGTTTTCTTGGAAAAAG 59.203 43.478 6.96 4.25 0.00 2.27
502 513 6.881065 ACATTGACATATGGATGCATACTACC 59.119 38.462 11.02 2.56 36.43 3.18
567 578 4.502016 ACACAACACATGACAAATTTGCA 58.498 34.783 18.12 16.14 0.00 4.08
784 806 2.130426 GGCCTCATGGAGCTCGAGA 61.130 63.158 18.75 9.31 34.57 4.04
785 807 1.363443 GCCTCATGGAGCTCGAGAG 59.637 63.158 18.75 16.65 34.57 3.20
786 808 1.106351 GCCTCATGGAGCTCGAGAGA 61.106 60.000 18.75 14.15 34.99 3.10
787 809 1.619654 CCTCATGGAGCTCGAGAGAT 58.380 55.000 18.75 0.00 35.57 2.75
788 810 1.270274 CCTCATGGAGCTCGAGAGATG 59.730 57.143 18.75 11.31 35.57 2.90
833 876 1.819632 GCCCGAAGCCATCATCGTT 60.820 57.895 0.00 0.00 37.36 3.85
870 913 2.414594 GCGCCATCTTTCCCATGC 59.585 61.111 0.00 0.00 0.00 4.06
901 944 0.251341 AAAACCCTTCCTGCGCATCT 60.251 50.000 12.24 0.00 0.00 2.90
912 955 0.108585 TGCGCATCTAATTCCCCTCC 59.891 55.000 5.66 0.00 0.00 4.30
913 956 0.951040 GCGCATCTAATTCCCCTCCG 60.951 60.000 0.30 0.00 0.00 4.63
914 957 0.951040 CGCATCTAATTCCCCTCCGC 60.951 60.000 0.00 0.00 0.00 5.54
953 997 9.213799 CATTTTCTTTCTCTAGCTACAAACTCT 57.786 33.333 0.00 0.00 0.00 3.24
1284 1366 6.070995 TCCGTCAAGAATAGCTTCCTTTCTTA 60.071 38.462 11.11 2.37 37.55 2.10
1285 1367 6.594159 CCGTCAAGAATAGCTTCCTTTCTTAA 59.406 38.462 11.11 0.00 37.55 1.85
1286 1368 7.119262 CCGTCAAGAATAGCTTCCTTTCTTAAA 59.881 37.037 11.11 3.88 37.55 1.52
1301 1383 6.704050 CCTTTCTTAAATTCTTTTCCGGCAAA 59.296 34.615 0.00 0.00 0.00 3.68
1326 1408 0.666274 TTCGGCTGACATGACACGAC 60.666 55.000 9.64 1.56 0.00 4.34
1366 1453 0.320247 CAGGGACGAGATGCATAGGC 60.320 60.000 0.00 0.00 41.68 3.93
1487 1580 3.739613 GGAACCCGGGAAGGCCAT 61.740 66.667 32.02 0.00 39.21 4.40
1569 1662 3.611674 TGGACGAGGCAGCACGAA 61.612 61.111 16.17 1.50 0.00 3.85
1581 1674 2.866028 CACGAAGCCAAGCTGCTC 59.134 61.111 1.00 0.00 41.80 4.26
1587 1680 1.544825 AAGCCAAGCTGCTCGACCTA 61.545 55.000 1.00 0.00 41.80 3.08
1848 1941 1.135603 CGCTACACGCTGGTAAGTACA 60.136 52.381 0.00 0.00 36.13 2.90
1851 1944 2.380084 ACACGCTGGTAAGTACATGG 57.620 50.000 0.00 0.00 0.00 3.66
1865 1958 1.033746 ACATGGCCTGGAATTCTGCG 61.034 55.000 3.32 0.00 0.00 5.18
1893 1986 2.293677 TCGATTGATCCACCGTGAAG 57.706 50.000 0.00 0.00 0.00 3.02
2175 2288 4.084066 GCGGATTTGAACAATTTGTTTCCC 60.084 41.667 15.54 11.06 41.28 3.97
2184 2297 5.628797 ACAATTTGTTTCCCTTGGACATT 57.371 34.783 0.00 0.00 0.00 2.71
2229 2347 0.603569 AGAACGTCAGTAGCCAGTGG 59.396 55.000 4.20 4.20 0.00 4.00
2420 2552 6.677781 ACCCGTCATGTATTTGTAAATCTG 57.322 37.500 0.00 0.00 0.00 2.90
2470 3554 8.718734 AGGTGTAAGTCGACAGAAAATAAATTC 58.281 33.333 19.50 0.00 0.00 2.17
2472 3556 9.872757 GTGTAAGTCGACAGAAAATAAATTCAA 57.127 29.630 19.50 0.00 0.00 2.69
2547 3631 2.038975 TACCTGCGCCCCTCTCTT 59.961 61.111 4.18 0.00 0.00 2.85
2633 3760 9.155785 CTTATATTTCTTTAGGGAGGGAGTACA 57.844 37.037 0.00 0.00 0.00 2.90
2634 3761 5.695424 ATTTCTTTAGGGAGGGAGTACAC 57.305 43.478 0.00 0.00 0.00 2.90
2688 3815 2.232941 TCATGTCAAGTTCGGTCTACCC 59.767 50.000 0.00 0.00 0.00 3.69
2698 3825 0.663688 CGGTCTACCCTGACATCTCG 59.336 60.000 0.00 0.00 38.61 4.04
2714 3841 7.488322 TGACATCTCGTGACATTATCAACATA 58.512 34.615 0.00 0.00 39.72 2.29
2715 3842 7.978975 TGACATCTCGTGACATTATCAACATAA 59.021 33.333 0.00 0.00 39.72 1.90
2723 3850 9.153952 CGTGACATTATCAACATAATTTAACCG 57.846 33.333 0.00 0.00 39.72 4.44
2728 3855 7.846644 TTATCAACATAATTTAACCGTCCGT 57.153 32.000 0.00 0.00 0.00 4.69
2740 3867 0.390603 CCGTCCGTTATGCACTGGAA 60.391 55.000 0.00 0.00 32.19 3.53
2747 3874 3.689161 CCGTTATGCACTGGAATTTCTGA 59.311 43.478 0.00 0.00 0.00 3.27
2782 3909 6.131264 TGAATATGCCCAAACAATCTCAGAT 58.869 36.000 0.00 0.00 0.00 2.90
2808 3935 5.976458 TGTTGGACAAGCTTTTCTTCAATT 58.024 33.333 12.17 0.00 31.27 2.32
2816 3943 5.990120 AGCTTTTCTTCAATTGGTGCTAT 57.010 34.783 5.42 0.00 0.00 2.97
3007 4136 1.334160 TCGTTTCTAGACCAGTGGCA 58.666 50.000 9.78 0.00 0.00 4.92
3021 4150 4.012374 CCAGTGGCAGTGAGTATTTGAAT 58.988 43.478 23.61 0.00 0.00 2.57
3080 4209 8.356657 CCTCAAATGTGATGGTTTTGTAACTTA 58.643 33.333 0.00 0.00 32.05 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.037758 CCAGAATAGATGACTCAACTTTGTACT 58.962 37.037 0.00 0.00 0.00 2.73
2 3 8.035394 TCCAGAATAGATGACTCAACTTTGTAC 58.965 37.037 0.00 0.00 0.00 2.90
3 4 8.134202 TCCAGAATAGATGACTCAACTTTGTA 57.866 34.615 0.00 0.00 0.00 2.41
4 5 7.009179 TCCAGAATAGATGACTCAACTTTGT 57.991 36.000 0.00 0.00 0.00 2.83
5 6 7.412346 CGTTCCAGAATAGATGACTCAACTTTG 60.412 40.741 0.00 0.00 0.00 2.77
6 7 6.591834 CGTTCCAGAATAGATGACTCAACTTT 59.408 38.462 0.00 0.00 0.00 2.66
7 8 6.102663 CGTTCCAGAATAGATGACTCAACTT 58.897 40.000 0.00 0.00 0.00 2.66
8 9 5.394663 CCGTTCCAGAATAGATGACTCAACT 60.395 44.000 0.00 0.00 0.00 3.16
9 10 4.806247 CCGTTCCAGAATAGATGACTCAAC 59.194 45.833 0.00 0.00 0.00 3.18
10 11 4.709886 TCCGTTCCAGAATAGATGACTCAA 59.290 41.667 0.00 0.00 0.00 3.02
11 12 4.278310 TCCGTTCCAGAATAGATGACTCA 58.722 43.478 0.00 0.00 0.00 3.41
12 13 4.261825 CCTCCGTTCCAGAATAGATGACTC 60.262 50.000 0.00 0.00 0.00 3.36
13 14 3.639094 CCTCCGTTCCAGAATAGATGACT 59.361 47.826 0.00 0.00 0.00 3.41
14 15 3.243907 CCCTCCGTTCCAGAATAGATGAC 60.244 52.174 0.00 0.00 0.00 3.06
15 16 2.965831 CCCTCCGTTCCAGAATAGATGA 59.034 50.000 0.00 0.00 0.00 2.92
16 17 2.965831 TCCCTCCGTTCCAGAATAGATG 59.034 50.000 0.00 0.00 0.00 2.90
17 18 3.235200 CTCCCTCCGTTCCAGAATAGAT 58.765 50.000 0.00 0.00 0.00 1.98
18 19 2.024273 ACTCCCTCCGTTCCAGAATAGA 60.024 50.000 0.00 0.00 0.00 1.98
19 20 2.389715 ACTCCCTCCGTTCCAGAATAG 58.610 52.381 0.00 0.00 0.00 1.73
20 21 2.544844 ACTCCCTCCGTTCCAGAATA 57.455 50.000 0.00 0.00 0.00 1.75
21 22 2.544844 TACTCCCTCCGTTCCAGAAT 57.455 50.000 0.00 0.00 0.00 2.40
22 23 2.544844 ATACTCCCTCCGTTCCAGAA 57.455 50.000 0.00 0.00 0.00 3.02
23 24 3.053095 ACTTATACTCCCTCCGTTCCAGA 60.053 47.826 0.00 0.00 0.00 3.86
24 25 3.297736 ACTTATACTCCCTCCGTTCCAG 58.702 50.000 0.00 0.00 0.00 3.86
25 26 3.053095 AGACTTATACTCCCTCCGTTCCA 60.053 47.826 0.00 0.00 0.00 3.53
26 27 3.564264 AGACTTATACTCCCTCCGTTCC 58.436 50.000 0.00 0.00 0.00 3.62
27 28 5.595257 AAAGACTTATACTCCCTCCGTTC 57.405 43.478 0.00 0.00 0.00 3.95
28 29 6.370186 AAAAAGACTTATACTCCCTCCGTT 57.630 37.500 0.00 0.00 0.00 4.44
29 30 6.894103 TCTAAAAAGACTTATACTCCCTCCGT 59.106 38.462 0.00 0.00 0.00 4.69
30 31 7.147949 TGTCTAAAAAGACTTATACTCCCTCCG 60.148 40.741 7.04 0.00 39.41 4.63
31 32 8.075761 TGTCTAAAAAGACTTATACTCCCTCC 57.924 38.462 7.04 0.00 39.41 4.30
42 43 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
43 44 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
49 50 9.567776 TCTTGTAGTCCATTTGAAATGTCTAAA 57.432 29.630 15.93 10.39 0.00 1.85
50 51 9.739276 ATCTTGTAGTCCATTTGAAATGTCTAA 57.261 29.630 15.93 6.36 0.00 2.10
52 53 9.167311 GTATCTTGTAGTCCATTTGAAATGTCT 57.833 33.333 15.93 14.81 0.00 3.41
53 54 8.116753 CGTATCTTGTAGTCCATTTGAAATGTC 58.883 37.037 15.93 9.10 0.00 3.06
54 55 7.065803 CCGTATCTTGTAGTCCATTTGAAATGT 59.934 37.037 15.93 1.43 0.00 2.71
55 56 7.279981 TCCGTATCTTGTAGTCCATTTGAAATG 59.720 37.037 10.84 10.84 0.00 2.32
56 57 7.335627 TCCGTATCTTGTAGTCCATTTGAAAT 58.664 34.615 0.00 0.00 0.00 2.17
57 58 6.703319 TCCGTATCTTGTAGTCCATTTGAAA 58.297 36.000 0.00 0.00 0.00 2.69
58 59 6.288941 TCCGTATCTTGTAGTCCATTTGAA 57.711 37.500 0.00 0.00 0.00 2.69
59 60 5.925506 TCCGTATCTTGTAGTCCATTTGA 57.074 39.130 0.00 0.00 0.00 2.69
60 61 6.049149 ACATCCGTATCTTGTAGTCCATTTG 58.951 40.000 0.00 0.00 0.00 2.32
61 62 6.235231 ACATCCGTATCTTGTAGTCCATTT 57.765 37.500 0.00 0.00 0.00 2.32
62 63 5.871396 ACATCCGTATCTTGTAGTCCATT 57.129 39.130 0.00 0.00 0.00 3.16
63 64 6.493802 ACATACATCCGTATCTTGTAGTCCAT 59.506 38.462 0.00 0.00 36.11 3.41
64 65 5.831525 ACATACATCCGTATCTTGTAGTCCA 59.168 40.000 0.00 0.00 36.11 4.02
65 66 6.328641 ACATACATCCGTATCTTGTAGTCC 57.671 41.667 0.00 0.00 36.11 3.85
66 67 8.097078 ACTACATACATCCGTATCTTGTAGTC 57.903 38.462 6.93 0.00 42.68 2.59
67 68 7.718314 TGACTACATACATCCGTATCTTGTAGT 59.282 37.037 11.40 11.40 45.69 2.73
68 69 8.095937 TGACTACATACATCCGTATCTTGTAG 57.904 38.462 0.00 0.00 40.93 2.74
69 70 8.631480 ATGACTACATACATCCGTATCTTGTA 57.369 34.615 0.00 0.00 36.11 2.41
70 71 6.954487 TGACTACATACATCCGTATCTTGT 57.046 37.500 0.00 0.00 36.11 3.16
108 109 6.276847 ACATACGGAACAAGATGAGAGAATC 58.723 40.000 0.00 0.00 0.00 2.52
109 110 6.227298 ACATACGGAACAAGATGAGAGAAT 57.773 37.500 0.00 0.00 0.00 2.40
110 111 5.661056 ACATACGGAACAAGATGAGAGAA 57.339 39.130 0.00 0.00 0.00 2.87
111 112 5.886474 ACTACATACGGAACAAGATGAGAGA 59.114 40.000 0.00 0.00 0.00 3.10
112 113 6.137794 ACTACATACGGAACAAGATGAGAG 57.862 41.667 0.00 0.00 0.00 3.20
113 114 5.650703 TGACTACATACGGAACAAGATGAGA 59.349 40.000 0.00 0.00 0.00 3.27
114 115 5.744345 GTGACTACATACGGAACAAGATGAG 59.256 44.000 0.00 0.00 0.00 2.90
115 116 5.417894 AGTGACTACATACGGAACAAGATGA 59.582 40.000 0.00 0.00 0.00 2.92
116 117 5.651530 AGTGACTACATACGGAACAAGATG 58.348 41.667 0.00 0.00 0.00 2.90
117 118 5.916661 AGTGACTACATACGGAACAAGAT 57.083 39.130 0.00 0.00 0.00 2.40
118 119 5.010314 ACAAGTGACTACATACGGAACAAGA 59.990 40.000 0.00 0.00 0.00 3.02
119 120 5.227908 ACAAGTGACTACATACGGAACAAG 58.772 41.667 0.00 0.00 0.00 3.16
120 121 5.204409 ACAAGTGACTACATACGGAACAA 57.796 39.130 0.00 0.00 0.00 2.83
121 122 4.859304 ACAAGTGACTACATACGGAACA 57.141 40.909 0.00 0.00 0.00 3.18
122 123 5.224888 TCAACAAGTGACTACATACGGAAC 58.775 41.667 0.00 0.00 0.00 3.62
123 124 5.456548 TCAACAAGTGACTACATACGGAA 57.543 39.130 0.00 0.00 0.00 4.30
124 125 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
125 126 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
126 127 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
127 128 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
129 130 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
130 131 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
133 134 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
134 135 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
135 136 9.396022 AGTCTTTTTAGAGATTTCAACAAGTGA 57.604 29.630 0.00 0.00 0.00 3.41
150 151 9.169592 CCGTTCCCAAATATAAGTCTTTTTAGA 57.830 33.333 0.00 0.00 0.00 2.10
151 152 9.169592 TCCGTTCCCAAATATAAGTCTTTTTAG 57.830 33.333 0.00 0.00 0.00 1.85
152 153 9.169592 CTCCGTTCCCAAATATAAGTCTTTTTA 57.830 33.333 0.00 0.00 0.00 1.52
153 154 7.122204 CCTCCGTTCCCAAATATAAGTCTTTTT 59.878 37.037 0.00 0.00 0.00 1.94
154 155 6.602009 CCTCCGTTCCCAAATATAAGTCTTTT 59.398 38.462 0.00 0.00 0.00 2.27
155 156 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
156 157 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
157 158 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
158 159 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
159 160 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
160 161 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
161 162 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
162 163 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
163 164 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
164 165 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
165 166 1.558294 GTACTCCCTCCGTTCCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
166 167 0.978907 GTACTCCCTCCGTTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
167 168 0.178926 TGTACTCCCTCCGTTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
168 169 0.042131 ATGTACTCCCTCCGTTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
169 170 0.464452 CATGTACTCCCTCCGTTCCC 59.536 60.000 0.00 0.00 0.00 3.97
170 171 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
171 172 0.179081 GGCATGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
172 173 0.907704 TGGCATGTACTCCCTCCGTT 60.908 55.000 0.00 0.00 0.00 4.44
173 174 0.907704 TTGGCATGTACTCCCTCCGT 60.908 55.000 0.00 0.00 0.00 4.69
174 175 0.469917 ATTGGCATGTACTCCCTCCG 59.530 55.000 0.00 0.00 0.00 4.63
175 176 1.490490 TCATTGGCATGTACTCCCTCC 59.510 52.381 0.00 0.00 0.00 4.30
176 177 2.171448 AGTCATTGGCATGTACTCCCTC 59.829 50.000 0.00 0.00 0.00 4.30
177 178 2.200081 AGTCATTGGCATGTACTCCCT 58.800 47.619 0.00 0.00 0.00 4.20
178 179 2.717639 AGTCATTGGCATGTACTCCC 57.282 50.000 0.00 0.00 0.00 4.30
179 180 6.699575 AATTTAGTCATTGGCATGTACTCC 57.300 37.500 0.00 0.00 0.00 3.85
180 181 7.538575 ACAAATTTAGTCATTGGCATGTACTC 58.461 34.615 0.00 0.00 0.00 2.59
181 182 7.466746 ACAAATTTAGTCATTGGCATGTACT 57.533 32.000 0.00 0.00 0.00 2.73
182 183 9.632807 TTTACAAATTTAGTCATTGGCATGTAC 57.367 29.630 0.00 0.00 0.00 2.90
186 187 9.086336 CGATTTTACAAATTTAGTCATTGGCAT 57.914 29.630 0.00 0.00 0.00 4.40
220 222 1.387295 TTTGGCCGTGCATGAACACA 61.387 50.000 7.72 0.00 40.73 3.72
221 223 0.939106 GTTTGGCCGTGCATGAACAC 60.939 55.000 7.72 0.00 37.19 3.32
230 232 3.712187 ACTACAATTTTGTTTGGCCGTG 58.288 40.909 0.00 0.00 42.35 4.94
278 280 3.734902 CGACTTGACGTCATGATCCATGA 60.735 47.826 31.26 9.23 46.84 3.07
297 307 1.829222 TGAGACATAAGAACCCCCGAC 59.171 52.381 0.00 0.00 0.00 4.79
301 311 3.871594 CGATGTTGAGACATAAGAACCCC 59.128 47.826 0.00 0.00 46.27 4.95
309 319 3.275999 TCTCGGTCGATGTTGAGACATA 58.724 45.455 0.00 0.00 46.27 2.29
343 353 4.327627 GTCTGCTAATTTTGAGTCGTCTCC 59.672 45.833 7.21 0.00 39.75 3.71
369 379 4.235079 TCAAAGGGCTGCACAACTATAT 57.765 40.909 4.01 0.00 0.00 0.86
385 395 6.501781 GCTCCATAAATCTCAACCATCAAAG 58.498 40.000 0.00 0.00 0.00 2.77
390 400 3.879295 CACGCTCCATAAATCTCAACCAT 59.121 43.478 0.00 0.00 0.00 3.55
402 412 3.410631 TCCAAGAAAACACGCTCCATA 57.589 42.857 0.00 0.00 0.00 2.74
567 578 8.844441 CATGCACTTTTCATGTTTTCAAAATT 57.156 26.923 0.00 0.00 37.22 1.82
633 645 3.251479 AGATTGACATGCGAGCTACAA 57.749 42.857 0.00 0.00 0.00 2.41
720 737 9.857957 ACAATTGCATTTCAAAGTTTCAAAATT 57.142 22.222 5.05 0.00 38.34 1.82
721 738 9.857957 AACAATTGCATTTCAAAGTTTCAAAAT 57.142 22.222 5.05 0.00 38.34 1.82
758 776 1.303236 TCCATGAGGCCCGTTTGTG 60.303 57.895 0.00 0.00 33.74 3.33
821 864 0.250038 CGATCCCAACGATGATGGCT 60.250 55.000 0.00 0.00 36.58 4.75
870 913 2.573340 GGTTTTGGCTGGCGATGG 59.427 61.111 0.00 0.00 0.00 3.51
901 944 2.844348 AGAAAAGAGCGGAGGGGAATTA 59.156 45.455 0.00 0.00 0.00 1.40
912 955 5.126396 AGAAAATGGGAAAGAAAAGAGCG 57.874 39.130 0.00 0.00 0.00 5.03
913 956 7.212976 AGAAAGAAAATGGGAAAGAAAAGAGC 58.787 34.615 0.00 0.00 0.00 4.09
914 957 8.637099 AGAGAAAGAAAATGGGAAAGAAAAGAG 58.363 33.333 0.00 0.00 0.00 2.85
953 997 5.070001 ACGTCTTCATGATGGGAAAGAAAA 58.930 37.500 8.60 0.00 36.05 2.29
1179 1261 1.202952 AGGAAGAGGACAGAGTCGTGT 60.203 52.381 0.00 0.00 32.65 4.49
1290 1372 1.268133 CGAACGTCTTTTGCCGGAAAA 60.268 47.619 5.05 3.64 32.44 2.29
1291 1373 0.305313 CGAACGTCTTTTGCCGGAAA 59.695 50.000 5.05 0.00 0.00 3.13
1301 1383 0.317160 TCATGTCAGCCGAACGTCTT 59.683 50.000 0.00 0.00 0.00 3.01
1581 1674 1.226603 GTGGCGCTGTAGTAGGTCG 60.227 63.158 7.64 0.00 0.00 4.79
1843 1936 2.684927 GCAGAATTCCAGGCCATGTACT 60.685 50.000 5.01 0.00 0.00 2.73
1848 1941 0.749454 GACGCAGAATTCCAGGCCAT 60.749 55.000 5.01 0.00 0.00 4.40
1851 1944 0.674895 ACAGACGCAGAATTCCAGGC 60.675 55.000 0.65 3.10 0.00 4.85
1893 1986 5.055812 CAGATGGAGATAAGAAAGAGGCAC 58.944 45.833 0.00 0.00 0.00 5.01
1961 2070 4.148825 CGGAGGAGAACCAGGCGG 62.149 72.222 0.00 0.00 38.94 6.13
1964 2073 1.954362 CTGCTCGGAGGAGAACCAGG 61.954 65.000 20.51 0.00 43.27 4.45
1969 2078 1.336887 CGAAAACTGCTCGGAGGAGAA 60.337 52.381 29.87 0.00 43.27 2.87
2019 2128 2.815647 CCGCGACTCCTGGCTTTC 60.816 66.667 8.23 0.00 0.00 2.62
2214 2329 1.878953 AAAACCACTGGCTACTGACG 58.121 50.000 0.00 0.00 0.00 4.35
2248 2367 1.204941 CGGCAGAGCTACTACCTTTGT 59.795 52.381 0.00 0.00 30.11 2.83
2254 2373 3.438297 TGAAATCGGCAGAGCTACTAC 57.562 47.619 0.00 0.00 0.00 2.73
2435 3519 2.239150 TCGACTTACACCTAGCCTCTCT 59.761 50.000 0.00 0.00 0.00 3.10
2470 3554 2.672714 TGAAACGATCGACTGACCTTG 58.327 47.619 24.34 0.00 0.00 3.61
2472 3556 2.609737 GGTTGAAACGATCGACTGACCT 60.610 50.000 24.34 0.00 41.53 3.85
2547 3631 4.566004 CGGAGGTAGAAAATGAACAGTGA 58.434 43.478 0.00 0.00 0.00 3.41
2633 3760 6.897966 TGTAAAGAGAGATATGAAGGACTGGT 59.102 38.462 0.00 0.00 0.00 4.00
2634 3761 7.069331 ACTGTAAAGAGAGATATGAAGGACTGG 59.931 40.741 0.00 0.00 0.00 4.00
2688 3815 5.807011 TGTTGATAATGTCACGAGATGTCAG 59.193 40.000 0.00 0.00 36.32 3.51
2698 3825 9.997482 ACGGTTAAATTATGTTGATAATGTCAC 57.003 29.630 0.00 0.00 35.34 3.67
2714 3841 4.004982 AGTGCATAACGGACGGTTAAATT 58.995 39.130 9.37 0.00 43.93 1.82
2715 3842 3.372822 CAGTGCATAACGGACGGTTAAAT 59.627 43.478 9.37 0.00 43.93 1.40
2720 3847 1.079405 CCAGTGCATAACGGACGGT 60.079 57.895 0.00 0.00 41.69 4.83
2723 3850 3.689649 AGAAATTCCAGTGCATAACGGAC 59.310 43.478 0.00 0.00 33.20 4.79
2728 3855 4.158394 GCCTTCAGAAATTCCAGTGCATAA 59.842 41.667 0.00 0.00 0.00 1.90
2740 3867 1.001641 AGCGCAGGCCTTCAGAAAT 60.002 52.632 11.47 0.00 41.24 2.17
2747 3874 1.450531 GCATATTCAGCGCAGGCCTT 61.451 55.000 11.47 0.00 41.24 4.35
2782 3909 4.644234 TGAAGAAAAGCTTGTCCAACATCA 59.356 37.500 13.25 7.60 36.83 3.07
2808 3935 2.972713 GGATAGAGTTGGGATAGCACCA 59.027 50.000 0.00 0.00 35.88 4.17
2970 4099 8.166422 AGAAACGAAGACTTTTCAAATACCAT 57.834 30.769 0.00 0.00 36.94 3.55
3021 4150 3.491342 TGCCACCACATTTGCTAAAGTA 58.509 40.909 0.00 0.00 0.00 2.24
3026 4155 1.342819 GGTTTGCCACCACATTTGCTA 59.657 47.619 0.00 0.00 46.42 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.