Multiple sequence alignment - TraesCS5B01G474500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G474500 chr5B 100.000 5457 0 0 1 5457 647945357 647939901 0.000000e+00 10078.0
1 TraesCS5B01G474500 chr5B 92.300 987 49 9 4132 5096 647935457 647934476 0.000000e+00 1376.0
2 TraesCS5B01G474500 chr5B 88.338 343 22 6 5095 5425 647934335 647933999 3.960000e-106 396.0
3 TraesCS5B01G474500 chr5B 97.872 47 1 0 5411 5457 647933123 647933077 1.260000e-11 82.4
4 TraesCS5B01G474500 chr5D 93.995 2015 78 16 2852 4829 515116748 515114740 0.000000e+00 3011.0
5 TraesCS5B01G474500 chr5D 89.076 2133 110 58 188 2271 515119455 515117397 0.000000e+00 2534.0
6 TraesCS5B01G474500 chr5D 94.175 515 23 7 2280 2791 515117341 515116831 0.000000e+00 778.0
7 TraesCS5B01G474500 chr5D 85.577 520 30 14 4828 5327 515114772 515114278 2.270000e-138 503.0
8 TraesCS5B01G474500 chr5A 92.112 1610 63 29 701 2277 643333323 643331745 0.000000e+00 2211.0
9 TraesCS5B01G474500 chr5A 92.587 1241 69 11 2852 4074 643330767 643329532 0.000000e+00 1760.0
10 TraesCS5B01G474500 chr5A 87.500 736 37 28 4076 4782 643329369 643328660 0.000000e+00 798.0
11 TraesCS5B01G474500 chr5A 96.850 254 8 0 2280 2533 643331690 643331437 5.050000e-115 425.0
12 TraesCS5B01G474500 chr5A 92.784 291 21 0 2530 2820 643331133 643330843 6.540000e-114 422.0
13 TraesCS5B01G474500 chr5A 86.364 352 30 6 5022 5361 643328485 643328140 8.640000e-98 368.0
14 TraesCS5B01G474500 chr5A 82.235 349 54 6 2475 2820 220456674 220456331 1.490000e-75 294.0
15 TraesCS5B01G474500 chr5A 81.934 393 21 15 191 561 643334196 643333832 2.490000e-73 287.0
16 TraesCS5B01G474500 chr5A 92.708 192 8 4 4818 5008 643328655 643328469 6.970000e-69 272.0
17 TraesCS5B01G474500 chr2B 83.573 487 74 4 2334 2820 268008493 268008013 8.340000e-123 451.0
18 TraesCS5B01G474500 chr2B 85.500 400 46 9 1131 1521 217793206 217792810 1.830000e-109 407.0
19 TraesCS5B01G474500 chr2B 82.126 207 20 8 1904 2109 34082992 34082802 1.570000e-35 161.0
20 TraesCS5B01G474500 chr7A 82.988 482 74 5 2343 2820 558250238 558250715 3.910000e-116 429.0
21 TraesCS5B01G474500 chr4B 82.952 481 75 5 2343 2820 300057403 300056927 1.400000e-115 427.0
22 TraesCS5B01G474500 chr4B 88.889 90 7 3 2188 2277 399824186 399824272 2.080000e-19 108.0
23 TraesCS5B01G474500 chr2A 85.250 400 47 6 1131 1521 172217695 172217299 8.510000e-108 401.0
24 TraesCS5B01G474500 chr2A 82.639 432 64 9 2392 2820 761151984 761152407 6.680000e-99 372.0
25 TraesCS5B01G474500 chr2A 76.691 695 105 22 2293 2960 49298591 49299255 3.150000e-87 333.0
26 TraesCS5B01G474500 chr1A 82.025 484 75 11 2343 2820 200578796 200578319 8.510000e-108 401.0
27 TraesCS5B01G474500 chr1A 85.836 353 46 4 1169 1519 487741430 487741080 6.680000e-99 372.0
28 TraesCS5B01G474500 chr2D 85.000 400 48 9 1131 1521 161376748 161376352 3.960000e-106 396.0
29 TraesCS5B01G474500 chr3B 86.782 348 44 2 1169 1515 603601790 603602136 2.380000e-103 387.0
30 TraesCS5B01G474500 chr1B 86.119 353 45 4 1169 1519 522061107 522060757 1.430000e-100 377.0
31 TraesCS5B01G474500 chr1D 85.836 353 46 4 1169 1519 388651055 388650705 6.680000e-99 372.0
32 TraesCS5B01G474500 chr6B 82.524 206 18 7 1904 2109 269688685 269688498 1.220000e-36 165.0
33 TraesCS5B01G474500 chr7B 87.023 131 15 2 2533 2663 295331341 295331213 4.400000e-31 147.0
34 TraesCS5B01G474500 chrUn 86.131 137 8 3 5205 5330 186163737 186163601 2.650000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G474500 chr5B 647939901 647945357 5456 True 10078.000000 10078 100.000000 1 5457 1 chr5B.!!$R1 5456
1 TraesCS5B01G474500 chr5B 647933077 647935457 2380 True 618.133333 1376 92.836667 4132 5457 3 chr5B.!!$R2 1325
2 TraesCS5B01G474500 chr5D 515114278 515119455 5177 True 1706.500000 3011 90.705750 188 5327 4 chr5D.!!$R1 5139
3 TraesCS5B01G474500 chr5A 643328140 643334196 6056 True 817.875000 2211 90.354875 191 5361 8 chr5A.!!$R2 5170
4 TraesCS5B01G474500 chr2A 49298591 49299255 664 False 333.000000 333 76.691000 2293 2960 1 chr2A.!!$F1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.035176 GCAGGCTCATCAGGAGGATC 59.965 60.0 0.0 0.0 44.22 3.36 F
1530 1966 0.034337 TCGTCCAGGTAACAAGGCAC 59.966 55.0 0.0 0.0 41.41 5.01 F
1826 2262 1.588674 TGTGTAACCGAACTGGCAAG 58.411 50.0 0.0 0.0 43.94 4.01 F
2696 3496 1.194781 AGACCTTGTCAGGCGGATGT 61.195 55.0 0.0 0.0 45.56 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2547 0.767375 AGCACCAGGTGTCTGTTGAT 59.233 50.0 21.26 0.0 35.73 2.57 R
2582 3382 0.954452 CCCTGTTCAGTTTCTGCACC 59.046 55.0 0.00 0.0 27.06 5.01 R
3549 4406 1.507140 ACCCACTCTTGTCTTGGTCA 58.493 50.0 0.00 0.0 0.00 4.02 R
4471 5510 0.320247 AGCACCTCGTCTGCTTCTTG 60.320 55.0 0.00 0.0 42.54 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.509290 TCCGGTCAGAGGAGGACT 58.491 61.111 0.00 0.00 35.61 3.85
36 37 1.000771 TCCGGTCAGAGGAGGACTG 60.001 63.158 0.00 0.00 40.55 3.51
37 38 3.609703 CGGTCAGAGGAGGACTGG 58.390 66.667 0.00 0.00 37.87 4.00
38 39 1.000771 CGGTCAGAGGAGGACTGGA 60.001 63.158 0.00 0.00 37.87 3.86
39 40 1.034838 CGGTCAGAGGAGGACTGGAG 61.035 65.000 0.00 0.00 37.87 3.86
40 41 0.333312 GGTCAGAGGAGGACTGGAGA 59.667 60.000 0.00 0.00 36.22 3.71
41 42 1.063266 GGTCAGAGGAGGACTGGAGAT 60.063 57.143 0.00 0.00 36.22 2.75
42 43 2.031120 GTCAGAGGAGGACTGGAGATG 58.969 57.143 0.00 0.00 36.22 2.90
43 44 1.925959 TCAGAGGAGGACTGGAGATGA 59.074 52.381 0.00 0.00 36.22 2.92
44 45 2.091939 TCAGAGGAGGACTGGAGATGAG 60.092 54.545 0.00 0.00 36.22 2.90
45 46 2.091939 CAGAGGAGGACTGGAGATGAGA 60.092 54.545 0.00 0.00 0.00 3.27
46 47 2.791179 AGAGGAGGACTGGAGATGAGAT 59.209 50.000 0.00 0.00 0.00 2.75
47 48 3.207321 AGAGGAGGACTGGAGATGAGATT 59.793 47.826 0.00 0.00 0.00 2.40
48 49 4.418526 AGAGGAGGACTGGAGATGAGATTA 59.581 45.833 0.00 0.00 0.00 1.75
49 50 5.103301 AGAGGAGGACTGGAGATGAGATTAA 60.103 44.000 0.00 0.00 0.00 1.40
50 51 5.533112 AGGAGGACTGGAGATGAGATTAAA 58.467 41.667 0.00 0.00 0.00 1.52
51 52 5.365314 AGGAGGACTGGAGATGAGATTAAAC 59.635 44.000 0.00 0.00 0.00 2.01
52 53 5.365314 GGAGGACTGGAGATGAGATTAAACT 59.635 44.000 0.00 0.00 0.00 2.66
53 54 6.551601 GGAGGACTGGAGATGAGATTAAACTA 59.448 42.308 0.00 0.00 0.00 2.24
54 55 7.354751 AGGACTGGAGATGAGATTAAACTAC 57.645 40.000 0.00 0.00 0.00 2.73
55 56 6.325286 AGGACTGGAGATGAGATTAAACTACC 59.675 42.308 0.00 0.00 0.00 3.18
56 57 6.150396 ACTGGAGATGAGATTAAACTACCG 57.850 41.667 0.00 0.00 0.00 4.02
57 58 4.945246 TGGAGATGAGATTAAACTACCGC 58.055 43.478 0.00 0.00 0.00 5.68
58 59 4.649674 TGGAGATGAGATTAAACTACCGCT 59.350 41.667 0.00 0.00 0.00 5.52
59 60 5.831525 TGGAGATGAGATTAAACTACCGCTA 59.168 40.000 0.00 0.00 0.00 4.26
60 61 6.016192 TGGAGATGAGATTAAACTACCGCTAG 60.016 42.308 0.00 0.00 0.00 3.42
61 62 6.207025 GGAGATGAGATTAAACTACCGCTAGA 59.793 42.308 0.00 0.00 0.00 2.43
62 63 7.255520 GGAGATGAGATTAAACTACCGCTAGAA 60.256 40.741 0.00 0.00 0.00 2.10
63 64 8.184304 AGATGAGATTAAACTACCGCTAGAAT 57.816 34.615 0.00 0.00 0.00 2.40
64 65 9.298250 AGATGAGATTAAACTACCGCTAGAATA 57.702 33.333 0.00 0.00 0.00 1.75
65 66 9.909644 GATGAGATTAAACTACCGCTAGAATAA 57.090 33.333 0.00 0.00 0.00 1.40
67 68 9.909644 TGAGATTAAACTACCGCTAGAATAATC 57.090 33.333 13.48 13.48 34.90 1.75
68 69 9.909644 GAGATTAAACTACCGCTAGAATAATCA 57.090 33.333 18.52 0.00 35.81 2.57
69 70 9.915629 AGATTAAACTACCGCTAGAATAATCAG 57.084 33.333 18.52 0.00 35.81 2.90
70 71 9.909644 GATTAAACTACCGCTAGAATAATCAGA 57.090 33.333 15.00 0.00 34.86 3.27
71 72 9.694137 ATTAAACTACCGCTAGAATAATCAGAC 57.306 33.333 0.00 0.00 0.00 3.51
72 73 5.359716 ACTACCGCTAGAATAATCAGACG 57.640 43.478 0.00 0.00 0.00 4.18
73 74 5.061853 ACTACCGCTAGAATAATCAGACGA 58.938 41.667 0.00 0.00 0.00 4.20
74 75 4.226113 ACCGCTAGAATAATCAGACGAC 57.774 45.455 0.00 0.00 0.00 4.34
75 76 3.884091 ACCGCTAGAATAATCAGACGACT 59.116 43.478 0.00 0.00 0.00 4.18
76 77 4.023878 ACCGCTAGAATAATCAGACGACTC 60.024 45.833 0.00 0.00 0.00 3.36
77 78 4.145276 CGCTAGAATAATCAGACGACTCG 58.855 47.826 0.00 0.00 0.00 4.18
78 79 4.318903 CGCTAGAATAATCAGACGACTCGT 60.319 45.833 3.08 3.08 45.10 4.18
87 88 3.659334 ACGACTCGTCCGTAGCAA 58.341 55.556 0.00 0.00 38.61 3.91
88 89 1.500844 ACGACTCGTCCGTAGCAAG 59.499 57.895 0.00 0.00 38.61 4.01
89 90 0.952497 ACGACTCGTCCGTAGCAAGA 60.952 55.000 0.00 0.00 38.61 3.02
90 91 0.377554 CGACTCGTCCGTAGCAAGAT 59.622 55.000 0.00 0.00 0.00 2.40
91 92 1.202154 CGACTCGTCCGTAGCAAGATT 60.202 52.381 0.00 0.00 0.00 2.40
92 93 2.731341 CGACTCGTCCGTAGCAAGATTT 60.731 50.000 0.00 0.00 0.00 2.17
93 94 3.251571 GACTCGTCCGTAGCAAGATTTT 58.748 45.455 0.00 0.00 0.00 1.82
94 95 3.660865 ACTCGTCCGTAGCAAGATTTTT 58.339 40.909 0.00 0.00 0.00 1.94
95 96 4.813027 ACTCGTCCGTAGCAAGATTTTTA 58.187 39.130 0.00 0.00 0.00 1.52
96 97 5.416947 ACTCGTCCGTAGCAAGATTTTTAT 58.583 37.500 0.00 0.00 0.00 1.40
97 98 5.519206 ACTCGTCCGTAGCAAGATTTTTATC 59.481 40.000 0.00 0.00 0.00 1.75
98 99 4.807304 TCGTCCGTAGCAAGATTTTTATCC 59.193 41.667 0.00 0.00 0.00 2.59
99 100 4.317839 CGTCCGTAGCAAGATTTTTATCCG 60.318 45.833 0.00 0.00 0.00 4.18
100 101 3.558418 TCCGTAGCAAGATTTTTATCCGC 59.442 43.478 0.00 0.00 0.00 5.54
101 102 3.531982 CGTAGCAAGATTTTTATCCGCG 58.468 45.455 0.00 0.00 0.00 6.46
102 103 3.244345 CGTAGCAAGATTTTTATCCGCGA 59.756 43.478 8.23 0.00 0.00 5.87
103 104 4.260051 CGTAGCAAGATTTTTATCCGCGAA 60.260 41.667 8.23 0.00 0.00 4.70
104 105 4.016113 AGCAAGATTTTTATCCGCGAAC 57.984 40.909 8.23 0.00 0.00 3.95
105 106 3.689649 AGCAAGATTTTTATCCGCGAACT 59.310 39.130 8.23 0.00 0.00 3.01
106 107 3.786048 GCAAGATTTTTATCCGCGAACTG 59.214 43.478 8.23 0.00 0.00 3.16
107 108 3.675467 AGATTTTTATCCGCGAACTGC 57.325 42.857 8.23 0.00 41.47 4.40
116 117 2.167918 GCGAACTGCGTGACGAAC 59.832 61.111 10.10 0.00 43.41 3.95
129 130 4.473520 CGAACGGGGCAGGCTCAT 62.474 66.667 0.00 0.00 0.00 2.90
130 131 2.514824 GAACGGGGCAGGCTCATC 60.515 66.667 0.00 0.00 0.00 2.92
131 132 3.329542 GAACGGGGCAGGCTCATCA 62.330 63.158 0.00 0.00 0.00 3.07
132 133 3.335356 AACGGGGCAGGCTCATCAG 62.335 63.158 0.00 0.00 0.00 2.90
133 134 4.559063 CGGGGCAGGCTCATCAGG 62.559 72.222 0.00 0.00 0.00 3.86
134 135 3.092511 GGGGCAGGCTCATCAGGA 61.093 66.667 0.00 0.00 0.00 3.86
135 136 2.509916 GGGCAGGCTCATCAGGAG 59.490 66.667 0.00 0.00 46.93 3.69
136 137 2.509916 GGCAGGCTCATCAGGAGG 59.490 66.667 0.00 0.00 44.22 4.30
137 138 2.068821 GGCAGGCTCATCAGGAGGA 61.069 63.158 0.00 0.00 44.22 3.71
138 139 1.417288 GGCAGGCTCATCAGGAGGAT 61.417 60.000 0.00 0.00 44.22 3.24
139 140 0.035176 GCAGGCTCATCAGGAGGATC 59.965 60.000 0.00 0.00 44.22 3.36
140 141 1.719529 CAGGCTCATCAGGAGGATCT 58.280 55.000 0.00 0.00 44.22 2.75
141 142 1.619827 CAGGCTCATCAGGAGGATCTC 59.380 57.143 0.00 0.00 44.22 2.75
142 143 1.219980 AGGCTCATCAGGAGGATCTCA 59.780 52.381 0.00 0.00 44.22 3.27
143 144 2.158127 AGGCTCATCAGGAGGATCTCAT 60.158 50.000 0.00 0.00 44.22 2.90
144 145 2.234414 GGCTCATCAGGAGGATCTCATC 59.766 54.545 0.00 0.00 44.22 2.92
145 146 3.167485 GCTCATCAGGAGGATCTCATCT 58.833 50.000 0.00 0.00 44.22 2.90
146 147 3.194116 GCTCATCAGGAGGATCTCATCTC 59.806 52.174 0.00 0.00 44.22 2.75
147 148 3.419943 TCATCAGGAGGATCTCATCTCG 58.580 50.000 0.00 0.00 32.57 4.04
148 149 1.614996 TCAGGAGGATCTCATCTCGC 58.385 55.000 0.00 0.00 33.73 5.03
149 150 1.144708 TCAGGAGGATCTCATCTCGCT 59.855 52.381 0.00 0.00 33.73 4.93
150 151 2.373502 TCAGGAGGATCTCATCTCGCTA 59.626 50.000 0.00 0.00 33.73 4.26
151 152 3.010027 TCAGGAGGATCTCATCTCGCTAT 59.990 47.826 0.00 0.00 33.73 2.97
152 153 3.378112 CAGGAGGATCTCATCTCGCTATC 59.622 52.174 0.00 0.00 33.73 2.08
153 154 3.266772 AGGAGGATCTCATCTCGCTATCT 59.733 47.826 0.00 0.00 33.73 1.98
154 155 4.473196 AGGAGGATCTCATCTCGCTATCTA 59.527 45.833 0.00 0.00 33.73 1.98
155 156 5.132648 AGGAGGATCTCATCTCGCTATCTAT 59.867 44.000 0.00 0.00 33.73 1.98
156 157 5.239306 GGAGGATCTCATCTCGCTATCTATG 59.761 48.000 0.00 0.00 33.73 2.23
157 158 4.580167 AGGATCTCATCTCGCTATCTATGC 59.420 45.833 0.00 0.00 0.00 3.14
158 159 4.580167 GGATCTCATCTCGCTATCTATGCT 59.420 45.833 0.00 0.00 0.00 3.79
159 160 5.067674 GGATCTCATCTCGCTATCTATGCTT 59.932 44.000 0.00 0.00 0.00 3.91
160 161 5.973899 TCTCATCTCGCTATCTATGCTTT 57.026 39.130 0.00 0.00 0.00 3.51
161 162 7.201776 GGATCTCATCTCGCTATCTATGCTTTA 60.202 40.741 0.00 0.00 0.00 1.85
162 163 6.847400 TCTCATCTCGCTATCTATGCTTTAC 58.153 40.000 0.00 0.00 0.00 2.01
163 164 6.657117 TCTCATCTCGCTATCTATGCTTTACT 59.343 38.462 0.00 0.00 0.00 2.24
164 165 7.175816 TCTCATCTCGCTATCTATGCTTTACTT 59.824 37.037 0.00 0.00 0.00 2.24
165 166 7.661968 TCATCTCGCTATCTATGCTTTACTTT 58.338 34.615 0.00 0.00 0.00 2.66
166 167 8.793592 TCATCTCGCTATCTATGCTTTACTTTA 58.206 33.333 0.00 0.00 0.00 1.85
167 168 9.579768 CATCTCGCTATCTATGCTTTACTTTAT 57.420 33.333 0.00 0.00 0.00 1.40
168 169 9.796120 ATCTCGCTATCTATGCTTTACTTTATC 57.204 33.333 0.00 0.00 0.00 1.75
169 170 8.244802 TCTCGCTATCTATGCTTTACTTTATCC 58.755 37.037 0.00 0.00 0.00 2.59
170 171 7.027760 TCGCTATCTATGCTTTACTTTATCCG 58.972 38.462 0.00 0.00 0.00 4.18
171 172 6.237595 CGCTATCTATGCTTTACTTTATCCGC 60.238 42.308 0.00 0.00 0.00 5.54
172 173 6.036191 GCTATCTATGCTTTACTTTATCCGCC 59.964 42.308 0.00 0.00 0.00 6.13
173 174 4.638304 TCTATGCTTTACTTTATCCGCCC 58.362 43.478 0.00 0.00 0.00 6.13
174 175 2.047002 TGCTTTACTTTATCCGCCCC 57.953 50.000 0.00 0.00 0.00 5.80
175 176 1.562475 TGCTTTACTTTATCCGCCCCT 59.438 47.619 0.00 0.00 0.00 4.79
176 177 2.219458 GCTTTACTTTATCCGCCCCTC 58.781 52.381 0.00 0.00 0.00 4.30
177 178 2.847441 CTTTACTTTATCCGCCCCTCC 58.153 52.381 0.00 0.00 0.00 4.30
178 179 2.185663 TTACTTTATCCGCCCCTCCT 57.814 50.000 0.00 0.00 0.00 3.69
179 180 2.185663 TACTTTATCCGCCCCTCCTT 57.814 50.000 0.00 0.00 0.00 3.36
180 181 0.837940 ACTTTATCCGCCCCTCCTTC 59.162 55.000 0.00 0.00 0.00 3.46
181 182 0.837272 CTTTATCCGCCCCTCCTTCA 59.163 55.000 0.00 0.00 0.00 3.02
182 183 0.544697 TTTATCCGCCCCTCCTTCAC 59.455 55.000 0.00 0.00 0.00 3.18
183 184 0.619255 TTATCCGCCCCTCCTTCACA 60.619 55.000 0.00 0.00 0.00 3.58
184 185 1.335132 TATCCGCCCCTCCTTCACAC 61.335 60.000 0.00 0.00 0.00 3.82
185 186 4.410400 CCGCCCCTCCTTCACACC 62.410 72.222 0.00 0.00 0.00 4.16
186 187 3.322466 CGCCCCTCCTTCACACCT 61.322 66.667 0.00 0.00 0.00 4.00
255 257 5.221342 ACCACCAATCGAATTAGCACAAAAA 60.221 36.000 0.00 0.00 0.00 1.94
305 317 7.304919 TCGCTAATCCTATACTAATCTCACG 57.695 40.000 0.00 0.00 0.00 4.35
309 321 5.646577 ATCCTATACTAATCTCACGCCAC 57.353 43.478 0.00 0.00 0.00 5.01
337 349 8.850156 CCACAAAGATCCTCTTTTAAAAAGAGA 58.150 33.333 20.07 11.25 43.62 3.10
338 350 9.890352 CACAAAGATCCTCTTTTAAAAAGAGAG 57.110 33.333 18.26 18.26 43.62 3.20
339 351 9.853177 ACAAAGATCCTCTTTTAAAAAGAGAGA 57.147 29.630 21.18 17.06 43.62 3.10
379 391 0.548510 AGATTTCTACAGGCAGGGGC 59.451 55.000 0.00 0.00 40.13 5.80
401 413 4.717991 CATCGTTTTAGCCGACATTTTCA 58.282 39.130 0.00 0.00 37.12 2.69
489 512 0.238289 ATGCGCGTGGACTTTTGAAG 59.762 50.000 8.43 0.00 0.00 3.02
491 514 1.646540 CGCGTGGACTTTTGAAGCA 59.353 52.632 0.00 0.00 0.00 3.91
548 582 2.767505 ACTGCCCAACTTCTAGAAACG 58.232 47.619 6.63 0.00 0.00 3.60
561 595 4.264638 AAACGCGGCACCAACTGC 62.265 61.111 12.47 0.00 46.31 4.40
575 609 4.193893 CTGCCCGCCCCATCATCA 62.194 66.667 0.00 0.00 0.00 3.07
581 615 1.002868 CGCCCCATCATCATCCTCC 60.003 63.158 0.00 0.00 0.00 4.30
582 616 1.486997 CGCCCCATCATCATCCTCCT 61.487 60.000 0.00 0.00 0.00 3.69
584 618 0.990374 CCCCATCATCATCCTCCTCC 59.010 60.000 0.00 0.00 0.00 4.30
585 619 1.486556 CCCCATCATCATCCTCCTCCT 60.487 57.143 0.00 0.00 0.00 3.69
588 622 2.495004 CCATCATCATCCTCCTCCTCCT 60.495 54.545 0.00 0.00 0.00 3.69
592 626 0.856982 TCATCCTCCTCCTCCTCCTC 59.143 60.000 0.00 0.00 0.00 3.71
593 627 0.560193 CATCCTCCTCCTCCTCCTCA 59.440 60.000 0.00 0.00 0.00 3.86
594 628 0.560688 ATCCTCCTCCTCCTCCTCAC 59.439 60.000 0.00 0.00 0.00 3.51
595 629 0.851332 TCCTCCTCCTCCTCCTCACA 60.851 60.000 0.00 0.00 0.00 3.58
597 631 0.686112 CTCCTCCTCCTCCTCACACC 60.686 65.000 0.00 0.00 0.00 4.16
599 633 1.304547 CTCCTCCTCCTCACACCGT 60.305 63.158 0.00 0.00 0.00 4.83
600 634 1.304217 TCCTCCTCCTCACACCGTC 60.304 63.158 0.00 0.00 0.00 4.79
601 635 2.352032 CCTCCTCCTCACACCGTCC 61.352 68.421 0.00 0.00 0.00 4.79
602 636 2.283676 TCCTCCTCACACCGTCCC 60.284 66.667 0.00 0.00 0.00 4.46
603 637 3.760035 CCTCCTCACACCGTCCCG 61.760 72.222 0.00 0.00 0.00 5.14
604 638 2.989824 CTCCTCACACCGTCCCGT 60.990 66.667 0.00 0.00 0.00 5.28
605 639 3.282745 CTCCTCACACCGTCCCGTG 62.283 68.421 0.00 0.00 39.75 4.94
607 641 3.991051 CTCACACCGTCCCGTGCT 61.991 66.667 0.00 0.00 37.25 4.40
608 642 2.598099 TCACACCGTCCCGTGCTA 60.598 61.111 0.00 0.00 37.25 3.49
609 643 1.945354 CTCACACCGTCCCGTGCTAT 61.945 60.000 0.00 0.00 37.25 2.97
610 644 0.680601 TCACACCGTCCCGTGCTATA 60.681 55.000 0.00 0.00 37.25 1.31
611 645 0.526954 CACACCGTCCCGTGCTATAC 60.527 60.000 0.00 0.00 37.25 1.47
612 646 0.682209 ACACCGTCCCGTGCTATACT 60.682 55.000 0.00 0.00 37.25 2.12
613 647 1.311859 CACCGTCCCGTGCTATACTA 58.688 55.000 0.00 0.00 0.00 1.82
614 648 1.002033 CACCGTCCCGTGCTATACTAC 60.002 57.143 0.00 0.00 0.00 2.73
615 649 1.133976 ACCGTCCCGTGCTATACTACT 60.134 52.381 0.00 0.00 0.00 2.57
616 650 1.534595 CCGTCCCGTGCTATACTACTC 59.465 57.143 0.00 0.00 0.00 2.59
617 651 1.534595 CGTCCCGTGCTATACTACTCC 59.465 57.143 0.00 0.00 0.00 3.85
618 652 2.809665 CGTCCCGTGCTATACTACTCCT 60.810 54.545 0.00 0.00 0.00 3.69
619 653 3.555795 CGTCCCGTGCTATACTACTCCTA 60.556 52.174 0.00 0.00 0.00 2.94
668 702 2.760650 CAAAATCTCCACCCTAAAGGCC 59.239 50.000 0.00 0.00 40.58 5.19
679 713 1.271054 CCTAAAGGCCGGATCCTCATG 60.271 57.143 5.05 0.00 34.82 3.07
702 1101 1.469335 CCATCATTGCCATCCCCAGC 61.469 60.000 0.00 0.00 0.00 4.85
705 1104 2.124151 ATTGCCATCCCCAGCGAC 60.124 61.111 0.00 0.00 0.00 5.19
740 1144 2.514803 TCTTTGCTTCCTGGTAAAGGC 58.485 47.619 0.00 0.00 46.92 4.35
742 1146 0.251608 TTGCTTCCTGGTAAAGGCCC 60.252 55.000 0.00 0.00 46.92 5.80
745 1158 3.615509 TTCCTGGTAAAGGCCCGCG 62.616 63.158 0.00 0.00 46.92 6.46
795 1209 4.124943 CATCCAGCCAGCCAGCCT 62.125 66.667 0.00 0.00 0.00 4.58
796 1210 4.124943 ATCCAGCCAGCCAGCCTG 62.125 66.667 0.00 0.00 41.41 4.85
893 1307 3.784412 CGTACAAACCGCGCAGGG 61.784 66.667 19.73 11.11 46.96 4.45
924 1338 5.243954 CCCTCGATTTCCCTTTTCTTTTTCT 59.756 40.000 0.00 0.00 0.00 2.52
928 1348 4.316205 TTTCCCTTTTCTTTTTCTCCGC 57.684 40.909 0.00 0.00 0.00 5.54
1005 1440 3.941188 TAGCTAGGCGCCATGGGC 61.941 66.667 31.54 24.54 46.75 5.36
1056 1491 4.772687 GGCCGGGGGAAGAACGAC 62.773 72.222 2.18 0.00 0.00 4.34
1092 1527 3.654173 GAACCCCTACACCGTCGCC 62.654 68.421 0.00 0.00 0.00 5.54
1530 1966 0.034337 TCGTCCAGGTAACAAGGCAC 59.966 55.000 0.00 0.00 41.41 5.01
1547 1983 2.154462 GCACCTTGCTTCTCTTGCTTA 58.846 47.619 0.00 0.00 40.96 3.09
1588 2024 7.665145 TGCTTGCTATGCCATATATTAGTTCAA 59.335 33.333 0.00 0.00 0.00 2.69
1607 2043 7.088905 AGTTCAATCATGAGAAGAATTGTTGC 58.911 34.615 0.09 0.00 36.78 4.17
1619 2055 5.064441 AGAATTGTTGCCTATTGCTCAAC 57.936 39.130 0.00 0.00 42.00 3.18
1674 2110 5.922544 GCAGCTTTGTGTTCATGAATTTAGT 59.077 36.000 12.12 0.00 0.00 2.24
1675 2111 7.083858 GCAGCTTTGTGTTCATGAATTTAGTA 58.916 34.615 12.12 0.00 0.00 1.82
1676 2112 7.756722 GCAGCTTTGTGTTCATGAATTTAGTAT 59.243 33.333 12.12 0.00 0.00 2.12
1810 2246 6.633668 TTGGTTTCGTTTGTGTTAAATGTG 57.366 33.333 0.00 0.00 0.00 3.21
1826 2262 1.588674 TGTGTAACCGAACTGGCAAG 58.411 50.000 0.00 0.00 43.94 4.01
1933 2370 6.519382 TGCATTATTGGATTGTTTTGTGACA 58.481 32.000 0.00 0.00 0.00 3.58
2100 2537 3.173151 TGGGCTATCTGTGTTCTTCAGA 58.827 45.455 0.00 0.00 44.37 3.27
2110 2547 3.901222 TGTGTTCTTCAGACCTGGTATGA 59.099 43.478 19.59 19.59 31.69 2.15
2114 2551 5.248248 TGTTCTTCAGACCTGGTATGATCAA 59.752 40.000 23.45 15.95 33.73 2.57
2153 2590 5.935789 TCAGTAACATACCTTTGCACCTTAC 59.064 40.000 0.00 0.00 0.00 2.34
2239 2677 3.715628 TTCAAGCCTCTCAAAGCAAAC 57.284 42.857 0.00 0.00 0.00 2.93
2244 2682 5.048504 TCAAGCCTCTCAAAGCAAACATTAG 60.049 40.000 0.00 0.00 0.00 1.73
2516 3008 3.194755 CCATTTTGGGCAGGTACTTAACC 59.805 47.826 0.00 0.00 40.50 2.85
2542 3341 7.500992 TCCTGGATTAGACTGAATGTATGTTC 58.499 38.462 0.00 0.00 0.00 3.18
2560 3360 6.850752 ATGTTCCGGGAAAATTACAAATCT 57.149 33.333 11.82 0.00 0.00 2.40
2582 3382 8.970859 ATCTCCTTACAAATTCCTGTTATCTG 57.029 34.615 0.00 0.00 0.00 2.90
2696 3496 1.194781 AGACCTTGTCAGGCGGATGT 61.195 55.000 0.00 0.00 45.56 3.06
2756 3556 2.512692 ACTTGGTGAGCATTATGGCA 57.487 45.000 0.00 0.00 35.83 4.92
2768 3568 3.803778 GCATTATGGCATTTCCTTTTCCG 59.196 43.478 4.78 0.00 35.26 4.30
2820 3620 7.309621 CCTCACTCTCATTTCAATGGTGAATTT 60.310 37.037 9.81 0.00 43.29 1.82
2823 3623 9.132521 CACTCTCATTTCAATGGTGAATTTTAC 57.867 33.333 0.00 0.00 43.29 2.01
2825 3625 7.610865 TCTCATTTCAATGGTGAATTTTACCC 58.389 34.615 7.80 0.00 43.29 3.69
2828 3628 8.435982 TCATTTCAATGGTGAATTTTACCCTTT 58.564 29.630 7.80 0.00 43.29 3.11
2867 3714 4.346418 TGTCCCTGTTAAACCAATTGCATT 59.654 37.500 0.00 0.00 0.00 3.56
2871 3718 8.254508 GTCCCTGTTAAACCAATTGCATTTATA 58.745 33.333 11.67 6.13 0.00 0.98
2874 3721 9.097257 CCTGTTAAACCAATTGCATTTATAAGG 57.903 33.333 16.96 16.96 0.00 2.69
3054 3901 8.786826 TTAAGGGTAAGACTCATTACATGTTG 57.213 34.615 2.30 0.00 37.38 3.33
3303 4156 1.349067 AGGCTGGACTCCGTAAACTT 58.651 50.000 0.00 0.00 0.00 2.66
3309 4162 4.324267 CTGGACTCCGTAAACTTGGAAAT 58.676 43.478 0.00 0.00 32.89 2.17
3459 4316 4.079253 AGGCTGATGTTGATAAAAACGGT 58.921 39.130 0.00 0.00 32.47 4.83
3537 4394 5.796424 ATGATGAACATATCCAAAAGGCC 57.204 39.130 0.00 0.00 37.46 5.19
3549 4406 4.998051 TCCAAAAGGCCTTCTCATACTTT 58.002 39.130 20.79 3.40 33.19 2.66
3558 4415 4.393371 GCCTTCTCATACTTTGACCAAGAC 59.607 45.833 0.00 0.00 36.21 3.01
3588 4445 6.265649 GTGGGTACATAGAGATTGAAGAGCTA 59.734 42.308 0.00 0.00 0.00 3.32
3747 4604 6.988580 TCAGAAGTCAGAACATATGCTAATGG 59.011 38.462 1.58 0.00 0.00 3.16
3897 4764 9.914131 CTTGTTCTTTTAAAGGATTCCCTAAAG 57.086 33.333 4.77 4.90 43.48 1.85
3899 4766 8.856103 TGTTCTTTTAAAGGATTCCCTAAAGTG 58.144 33.333 4.77 2.57 43.48 3.16
3926 4793 4.921515 GCAATTGCTATCATTGCACCTATG 59.078 41.667 23.21 0.00 46.96 2.23
3975 4842 6.321435 TCATACCTGACAGTCAATGGTAGTAG 59.679 42.308 20.75 14.99 32.79 2.57
3981 4848 4.157246 ACAGTCAATGGTAGTAGTGGACA 58.843 43.478 0.00 0.00 0.00 4.02
3996 4863 3.945285 AGTGGACACCATAAAATAAGCGG 59.055 43.478 0.00 0.00 35.28 5.52
4091 5119 5.460646 CAACATGTATGACTTGTTCAACCC 58.539 41.667 0.00 0.00 42.29 4.11
4164 5194 4.735662 TGCAAAGTAAACGACATACCAC 57.264 40.909 0.00 0.00 0.00 4.16
4189 5227 4.637534 CAGACCAGGTCACAAGGATAAATG 59.362 45.833 22.31 2.61 34.60 2.32
4254 5293 3.018423 AGCTTGACTTGTTCAAACCCT 57.982 42.857 0.00 0.00 43.90 4.34
4471 5510 1.028905 AGTAGACCGAGCAGAGATGC 58.971 55.000 0.00 0.00 0.00 3.91
4477 5516 1.288350 CCGAGCAGAGATGCAAGAAG 58.712 55.000 2.73 0.00 37.25 2.85
4544 5583 1.269309 GCTACTGATCGTGATCGCCTT 60.269 52.381 0.00 0.00 40.63 4.35
4613 5652 2.670251 CGCTGTGCCGGGGTTTTA 60.670 61.111 2.18 0.00 0.00 1.52
4690 5752 0.389948 ACCACTCGATTCTTGGCGTC 60.390 55.000 0.00 0.00 33.25 5.19
4784 5846 3.942115 GGAAATGCTTAACAGAGGAGTCC 59.058 47.826 0.00 0.00 0.00 3.85
4802 5864 1.277273 TCCTGGTCTTGCACTCATCAG 59.723 52.381 0.00 0.00 0.00 2.90
4803 5865 1.085091 CTGGTCTTGCACTCATCAGC 58.915 55.000 0.00 0.00 0.00 4.26
4804 5866 0.321919 TGGTCTTGCACTCATCAGCC 60.322 55.000 0.00 0.00 0.00 4.85
4805 5867 0.035630 GGTCTTGCACTCATCAGCCT 60.036 55.000 0.00 0.00 0.00 4.58
4806 5868 1.085091 GTCTTGCACTCATCAGCCTG 58.915 55.000 0.00 0.00 0.00 4.85
4807 5869 0.689055 TCTTGCACTCATCAGCCTGT 59.311 50.000 0.00 0.00 0.00 4.00
4808 5870 0.803117 CTTGCACTCATCAGCCTGTG 59.197 55.000 0.00 0.00 0.00 3.66
4809 5871 3.185155 GCACTCATCAGCCTGTGC 58.815 61.111 0.00 0.00 46.66 4.57
4810 5872 2.747822 GCACTCATCAGCCTGTGCG 61.748 63.158 0.00 0.00 44.60 5.34
4811 5873 2.435586 ACTCATCAGCCTGTGCGC 60.436 61.111 0.00 0.00 44.33 6.09
4812 5874 2.125229 CTCATCAGCCTGTGCGCT 60.125 61.111 9.73 0.00 44.33 5.92
4818 5880 4.326507 AGCCTGTGCGCTGAAGCT 62.327 61.111 9.73 9.45 44.33 3.74
4819 5881 3.360340 GCCTGTGCGCTGAAGCTT 61.360 61.111 9.73 0.00 39.32 3.74
4820 5882 2.866028 CCTGTGCGCTGAAGCTTC 59.134 61.111 19.89 19.89 39.32 3.86
4859 5956 1.282875 GAGTGCTGACGGTTTTGCC 59.717 57.895 0.00 0.00 0.00 4.52
4917 6015 0.590481 GTCGGACAAACACGGCAAAC 60.590 55.000 2.62 0.00 34.37 2.93
4936 6034 1.002868 AGATGCAAGCTTCTGCCGT 60.003 52.632 7.90 0.00 41.90 5.68
4937 6035 1.136147 GATGCAAGCTTCTGCCGTG 59.864 57.895 7.90 0.00 41.90 4.94
4938 6036 1.300971 GATGCAAGCTTCTGCCGTGA 61.301 55.000 7.90 0.00 41.90 4.35
5108 6365 5.086058 CGTACGCTCAGTTTGCAAAATAAT 58.914 37.500 14.67 0.00 0.00 1.28
5129 6386 8.692682 ATAATCCTTCCTCCTCTTGCTAATAT 57.307 34.615 0.00 0.00 0.00 1.28
5130 6387 5.815233 TCCTTCCTCCTCTTGCTAATATG 57.185 43.478 0.00 0.00 0.00 1.78
5131 6388 5.219739 TCCTTCCTCCTCTTGCTAATATGT 58.780 41.667 0.00 0.00 0.00 2.29
5132 6389 6.382087 TCCTTCCTCCTCTTGCTAATATGTA 58.618 40.000 0.00 0.00 0.00 2.29
5136 6393 6.373759 TCCTCCTCTTGCTAATATGTACTGA 58.626 40.000 0.00 0.00 0.00 3.41
5142 6399 9.202273 CCTCTTGCTAATATGTACTGAAGAATC 57.798 37.037 0.00 0.00 0.00 2.52
5147 6404 9.973450 TGCTAATATGTACTGAAGAATCTTCTC 57.027 33.333 21.89 11.25 36.28 2.87
5157 6414 3.742433 AGAATCTTCTCGTATGCCCAG 57.258 47.619 0.00 0.00 29.94 4.45
5160 6417 4.038162 AGAATCTTCTCGTATGCCCAGTAC 59.962 45.833 0.00 0.00 29.94 2.73
5231 6488 2.871427 GCTTGCCTCCGATAACGCG 61.871 63.158 3.53 3.53 38.29 6.01
5256 6513 1.911766 GGAGGAGTCGGTGGTTGGA 60.912 63.158 0.00 0.00 0.00 3.53
5371 6640 0.443869 CCGTACACATCTTGCTGCAC 59.556 55.000 0.00 0.00 0.00 4.57
5402 6682 1.299089 GGCCACGTGCTTGTTTGAC 60.299 57.895 10.91 0.00 40.92 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.034838 CAGTCCTCCTCTGACCGGAG 61.035 65.000 9.46 6.08 46.11 4.63
18 19 1.000771 CAGTCCTCCTCTGACCGGA 60.001 63.158 9.46 0.00 35.20 5.14
19 20 2.055042 CCAGTCCTCCTCTGACCGG 61.055 68.421 0.00 0.00 35.20 5.28
20 21 1.000771 TCCAGTCCTCCTCTGACCG 60.001 63.158 0.00 0.00 35.20 4.79
21 22 0.333312 TCTCCAGTCCTCCTCTGACC 59.667 60.000 0.00 0.00 35.20 4.02
22 23 2.031120 CATCTCCAGTCCTCCTCTGAC 58.969 57.143 0.00 0.00 35.20 3.51
23 24 1.925959 TCATCTCCAGTCCTCCTCTGA 59.074 52.381 0.00 0.00 35.20 3.27
24 25 2.091939 TCTCATCTCCAGTCCTCCTCTG 60.092 54.545 0.00 0.00 0.00 3.35
25 26 2.213310 TCTCATCTCCAGTCCTCCTCT 58.787 52.381 0.00 0.00 0.00 3.69
26 27 2.746279 TCTCATCTCCAGTCCTCCTC 57.254 55.000 0.00 0.00 0.00 3.71
27 28 3.704545 AATCTCATCTCCAGTCCTCCT 57.295 47.619 0.00 0.00 0.00 3.69
28 29 5.365314 AGTTTAATCTCATCTCCAGTCCTCC 59.635 44.000 0.00 0.00 0.00 4.30
29 30 6.478512 AGTTTAATCTCATCTCCAGTCCTC 57.521 41.667 0.00 0.00 0.00 3.71
30 31 6.325286 GGTAGTTTAATCTCATCTCCAGTCCT 59.675 42.308 0.00 0.00 0.00 3.85
31 32 6.517605 GGTAGTTTAATCTCATCTCCAGTCC 58.482 44.000 0.00 0.00 0.00 3.85
32 33 6.210078 CGGTAGTTTAATCTCATCTCCAGTC 58.790 44.000 0.00 0.00 0.00 3.51
33 34 5.452077 GCGGTAGTTTAATCTCATCTCCAGT 60.452 44.000 0.00 0.00 0.00 4.00
34 35 4.985409 GCGGTAGTTTAATCTCATCTCCAG 59.015 45.833 0.00 0.00 0.00 3.86
35 36 4.649674 AGCGGTAGTTTAATCTCATCTCCA 59.350 41.667 0.00 0.00 0.00 3.86
36 37 5.203060 AGCGGTAGTTTAATCTCATCTCC 57.797 43.478 0.00 0.00 0.00 3.71
37 38 7.204496 TCTAGCGGTAGTTTAATCTCATCTC 57.796 40.000 20.32 0.00 0.00 2.75
38 39 7.584122 TTCTAGCGGTAGTTTAATCTCATCT 57.416 36.000 20.32 0.00 0.00 2.90
39 40 9.909644 TTATTCTAGCGGTAGTTTAATCTCATC 57.090 33.333 20.32 0.00 0.00 2.92
41 42 9.909644 GATTATTCTAGCGGTAGTTTAATCTCA 57.090 33.333 28.23 12.84 33.72 3.27
42 43 9.909644 TGATTATTCTAGCGGTAGTTTAATCTC 57.090 33.333 31.06 21.40 35.28 2.75
43 44 9.915629 CTGATTATTCTAGCGGTAGTTTAATCT 57.084 33.333 31.06 17.24 35.28 2.40
44 45 9.909644 TCTGATTATTCTAGCGGTAGTTTAATC 57.090 33.333 28.48 28.48 35.09 1.75
45 46 9.694137 GTCTGATTATTCTAGCGGTAGTTTAAT 57.306 33.333 20.32 20.72 0.00 1.40
46 47 7.859377 CGTCTGATTATTCTAGCGGTAGTTTAA 59.141 37.037 20.32 17.66 0.00 1.52
47 48 7.227314 TCGTCTGATTATTCTAGCGGTAGTTTA 59.773 37.037 20.32 10.92 0.00 2.01
48 49 6.039047 TCGTCTGATTATTCTAGCGGTAGTTT 59.961 38.462 20.32 11.83 0.00 2.66
49 50 5.530171 TCGTCTGATTATTCTAGCGGTAGTT 59.470 40.000 20.32 12.15 0.00 2.24
50 51 5.049543 GTCGTCTGATTATTCTAGCGGTAGT 60.050 44.000 20.32 5.81 0.00 2.73
51 52 5.179742 AGTCGTCTGATTATTCTAGCGGTAG 59.820 44.000 15.51 15.51 0.00 3.18
52 53 5.061853 AGTCGTCTGATTATTCTAGCGGTA 58.938 41.667 0.00 0.00 0.00 4.02
53 54 3.884091 AGTCGTCTGATTATTCTAGCGGT 59.116 43.478 0.00 0.00 0.00 5.68
54 55 4.468643 GAGTCGTCTGATTATTCTAGCGG 58.531 47.826 0.00 0.00 0.00 5.52
55 56 4.145276 CGAGTCGTCTGATTATTCTAGCG 58.855 47.826 3.82 0.00 0.00 4.26
56 57 5.098218 ACGAGTCGTCTGATTATTCTAGC 57.902 43.478 13.56 0.00 33.69 3.42
70 71 0.952497 TCTTGCTACGGACGAGTCGT 60.952 55.000 20.02 20.02 45.10 4.34
71 72 0.377554 ATCTTGCTACGGACGAGTCG 59.622 55.000 11.85 11.85 0.00 4.18
72 73 2.563471 AATCTTGCTACGGACGAGTC 57.437 50.000 0.00 0.00 0.00 3.36
73 74 3.314541 AAAATCTTGCTACGGACGAGT 57.685 42.857 0.00 0.00 0.00 4.18
74 75 5.050972 GGATAAAAATCTTGCTACGGACGAG 60.051 44.000 0.00 0.00 0.00 4.18
75 76 4.807304 GGATAAAAATCTTGCTACGGACGA 59.193 41.667 0.00 0.00 0.00 4.20
76 77 4.317839 CGGATAAAAATCTTGCTACGGACG 60.318 45.833 0.00 0.00 0.00 4.79
77 78 4.552184 GCGGATAAAAATCTTGCTACGGAC 60.552 45.833 0.00 0.00 0.00 4.79
78 79 3.558418 GCGGATAAAAATCTTGCTACGGA 59.442 43.478 0.00 0.00 0.00 4.69
79 80 3.603857 CGCGGATAAAAATCTTGCTACGG 60.604 47.826 0.00 0.00 0.00 4.02
80 81 3.244345 TCGCGGATAAAAATCTTGCTACG 59.756 43.478 6.13 0.00 0.00 3.51
81 82 4.789095 TCGCGGATAAAAATCTTGCTAC 57.211 40.909 6.13 0.00 0.00 3.58
82 83 4.873827 AGTTCGCGGATAAAAATCTTGCTA 59.126 37.500 6.13 0.00 0.00 3.49
83 84 3.689649 AGTTCGCGGATAAAAATCTTGCT 59.310 39.130 6.13 0.00 0.00 3.91
84 85 3.786048 CAGTTCGCGGATAAAAATCTTGC 59.214 43.478 6.13 0.00 0.00 4.01
85 86 3.786048 GCAGTTCGCGGATAAAAATCTTG 59.214 43.478 6.13 0.00 0.00 3.02
86 87 4.016113 GCAGTTCGCGGATAAAAATCTT 57.984 40.909 6.13 0.00 0.00 2.40
87 88 3.675467 GCAGTTCGCGGATAAAAATCT 57.325 42.857 6.13 0.00 0.00 2.40
99 100 2.167918 GTTCGTCACGCAGTTCGC 59.832 61.111 0.00 0.00 41.61 4.70
100 101 2.459904 CGTTCGTCACGCAGTTCG 59.540 61.111 0.00 0.00 41.61 3.95
112 113 4.473520 ATGAGCCTGCCCCGTTCG 62.474 66.667 0.00 0.00 0.00 3.95
113 114 2.514824 GATGAGCCTGCCCCGTTC 60.515 66.667 0.00 0.00 0.00 3.95
114 115 3.329889 TGATGAGCCTGCCCCGTT 61.330 61.111 0.00 0.00 0.00 4.44
115 116 3.790437 CTGATGAGCCTGCCCCGT 61.790 66.667 0.00 0.00 0.00 5.28
116 117 4.559063 CCTGATGAGCCTGCCCCG 62.559 72.222 0.00 0.00 0.00 5.73
117 118 3.092511 TCCTGATGAGCCTGCCCC 61.093 66.667 0.00 0.00 0.00 5.80
118 119 2.509916 CTCCTGATGAGCCTGCCC 59.490 66.667 0.00 0.00 33.47 5.36
119 120 1.417288 ATCCTCCTGATGAGCCTGCC 61.417 60.000 0.00 0.00 39.98 4.85
120 121 0.035176 GATCCTCCTGATGAGCCTGC 59.965 60.000 0.00 0.00 39.98 4.85
121 122 1.619827 GAGATCCTCCTGATGAGCCTG 59.380 57.143 0.00 0.00 39.98 4.85
122 123 1.219980 TGAGATCCTCCTGATGAGCCT 59.780 52.381 0.00 0.00 39.98 4.58
123 124 1.714541 TGAGATCCTCCTGATGAGCC 58.285 55.000 0.00 0.00 39.98 4.70
124 125 3.167485 AGATGAGATCCTCCTGATGAGC 58.833 50.000 0.00 0.00 39.98 4.26
125 126 3.441222 CGAGATGAGATCCTCCTGATGAG 59.559 52.174 0.00 0.00 41.07 2.90
126 127 3.419943 CGAGATGAGATCCTCCTGATGA 58.580 50.000 0.00 0.00 32.41 2.92
127 128 2.094597 GCGAGATGAGATCCTCCTGATG 60.095 54.545 0.00 0.00 32.41 3.07
128 129 2.170166 GCGAGATGAGATCCTCCTGAT 58.830 52.381 0.00 0.00 36.01 2.90
129 130 1.144708 AGCGAGATGAGATCCTCCTGA 59.855 52.381 0.00 0.00 0.00 3.86
130 131 1.619654 AGCGAGATGAGATCCTCCTG 58.380 55.000 0.00 0.00 0.00 3.86
131 132 3.266772 AGATAGCGAGATGAGATCCTCCT 59.733 47.826 0.00 0.00 0.00 3.69
132 133 3.620488 AGATAGCGAGATGAGATCCTCC 58.380 50.000 0.00 0.00 0.00 4.30
133 134 5.277974 GCATAGATAGCGAGATGAGATCCTC 60.278 48.000 0.00 0.00 0.00 3.71
134 135 4.580167 GCATAGATAGCGAGATGAGATCCT 59.420 45.833 0.00 0.00 0.00 3.24
135 136 4.580167 AGCATAGATAGCGAGATGAGATCC 59.420 45.833 0.00 0.00 37.01 3.36
136 137 5.756195 AGCATAGATAGCGAGATGAGATC 57.244 43.478 0.00 0.00 37.01 2.75
137 138 6.528537 AAAGCATAGATAGCGAGATGAGAT 57.471 37.500 0.00 0.00 37.01 2.75
138 139 5.973899 AAAGCATAGATAGCGAGATGAGA 57.026 39.130 0.00 0.00 37.01 3.27
139 140 6.851609 AGTAAAGCATAGATAGCGAGATGAG 58.148 40.000 0.00 0.00 37.01 2.90
140 141 6.825944 AGTAAAGCATAGATAGCGAGATGA 57.174 37.500 0.00 0.00 37.01 2.92
141 142 7.881643 AAAGTAAAGCATAGATAGCGAGATG 57.118 36.000 0.00 0.00 37.01 2.90
142 143 9.796120 GATAAAGTAAAGCATAGATAGCGAGAT 57.204 33.333 0.00 0.00 37.01 2.75
143 144 8.244802 GGATAAAGTAAAGCATAGATAGCGAGA 58.755 37.037 0.00 0.00 37.01 4.04
144 145 7.219154 CGGATAAAGTAAAGCATAGATAGCGAG 59.781 40.741 0.00 0.00 37.01 5.03
145 146 7.027760 CGGATAAAGTAAAGCATAGATAGCGA 58.972 38.462 0.00 0.00 37.01 4.93
146 147 6.237595 GCGGATAAAGTAAAGCATAGATAGCG 60.238 42.308 0.00 0.00 37.01 4.26
147 148 6.036191 GGCGGATAAAGTAAAGCATAGATAGC 59.964 42.308 0.00 0.00 0.00 2.97
148 149 6.535508 GGGCGGATAAAGTAAAGCATAGATAG 59.464 42.308 0.00 0.00 0.00 2.08
149 150 6.403878 GGGCGGATAAAGTAAAGCATAGATA 58.596 40.000 0.00 0.00 0.00 1.98
150 151 5.246307 GGGCGGATAAAGTAAAGCATAGAT 58.754 41.667 0.00 0.00 0.00 1.98
151 152 4.504340 GGGGCGGATAAAGTAAAGCATAGA 60.504 45.833 0.00 0.00 0.00 1.98
152 153 3.751698 GGGGCGGATAAAGTAAAGCATAG 59.248 47.826 0.00 0.00 0.00 2.23
153 154 3.393278 AGGGGCGGATAAAGTAAAGCATA 59.607 43.478 0.00 0.00 0.00 3.14
154 155 2.174854 AGGGGCGGATAAAGTAAAGCAT 59.825 45.455 0.00 0.00 0.00 3.79
155 156 1.562475 AGGGGCGGATAAAGTAAAGCA 59.438 47.619 0.00 0.00 0.00 3.91
156 157 2.219458 GAGGGGCGGATAAAGTAAAGC 58.781 52.381 0.00 0.00 0.00 3.51
157 158 2.438392 AGGAGGGGCGGATAAAGTAAAG 59.562 50.000 0.00 0.00 0.00 1.85
158 159 2.484602 AGGAGGGGCGGATAAAGTAAA 58.515 47.619 0.00 0.00 0.00 2.01
159 160 2.185663 AGGAGGGGCGGATAAAGTAA 57.814 50.000 0.00 0.00 0.00 2.24
160 161 2.044758 GAAGGAGGGGCGGATAAAGTA 58.955 52.381 0.00 0.00 0.00 2.24
161 162 0.837940 GAAGGAGGGGCGGATAAAGT 59.162 55.000 0.00 0.00 0.00 2.66
162 163 0.837272 TGAAGGAGGGGCGGATAAAG 59.163 55.000 0.00 0.00 0.00 1.85
163 164 0.544697 GTGAAGGAGGGGCGGATAAA 59.455 55.000 0.00 0.00 0.00 1.40
164 165 0.619255 TGTGAAGGAGGGGCGGATAA 60.619 55.000 0.00 0.00 0.00 1.75
165 166 1.002403 TGTGAAGGAGGGGCGGATA 59.998 57.895 0.00 0.00 0.00 2.59
166 167 2.285368 TGTGAAGGAGGGGCGGAT 60.285 61.111 0.00 0.00 0.00 4.18
167 168 3.319198 GTGTGAAGGAGGGGCGGA 61.319 66.667 0.00 0.00 0.00 5.54
168 169 4.410400 GGTGTGAAGGAGGGGCGG 62.410 72.222 0.00 0.00 0.00 6.13
169 170 1.338136 ATAGGTGTGAAGGAGGGGCG 61.338 60.000 0.00 0.00 0.00 6.13
170 171 0.181350 CATAGGTGTGAAGGAGGGGC 59.819 60.000 0.00 0.00 0.00 5.80
171 172 0.181350 GCATAGGTGTGAAGGAGGGG 59.819 60.000 0.00 0.00 0.00 4.79
172 173 1.207791 AGCATAGGTGTGAAGGAGGG 58.792 55.000 0.00 0.00 0.00 4.30
173 174 3.356529 AAAGCATAGGTGTGAAGGAGG 57.643 47.619 0.00 0.00 0.00 4.30
174 175 5.091261 AGTAAAGCATAGGTGTGAAGGAG 57.909 43.478 0.00 0.00 0.00 3.69
175 176 5.499004 AAGTAAAGCATAGGTGTGAAGGA 57.501 39.130 0.00 0.00 0.00 3.36
176 177 7.012421 GGATAAAGTAAAGCATAGGTGTGAAGG 59.988 40.741 0.00 0.00 0.00 3.46
177 178 7.770897 AGGATAAAGTAAAGCATAGGTGTGAAG 59.229 37.037 0.00 0.00 0.00 3.02
178 179 7.630082 AGGATAAAGTAAAGCATAGGTGTGAA 58.370 34.615 0.00 0.00 0.00 3.18
179 180 7.195374 AGGATAAAGTAAAGCATAGGTGTGA 57.805 36.000 0.00 0.00 0.00 3.58
180 181 7.552687 TGAAGGATAAAGTAAAGCATAGGTGTG 59.447 37.037 0.00 0.00 0.00 3.82
181 182 7.630082 TGAAGGATAAAGTAAAGCATAGGTGT 58.370 34.615 0.00 0.00 0.00 4.16
182 183 8.506168 TTGAAGGATAAAGTAAAGCATAGGTG 57.494 34.615 0.00 0.00 0.00 4.00
183 184 8.329502 ACTTGAAGGATAAAGTAAAGCATAGGT 58.670 33.333 0.00 0.00 34.90 3.08
184 185 8.738645 ACTTGAAGGATAAAGTAAAGCATAGG 57.261 34.615 0.00 0.00 34.90 2.57
185 186 8.831550 GGACTTGAAGGATAAAGTAAAGCATAG 58.168 37.037 0.00 0.00 36.77 2.23
186 187 8.325787 TGGACTTGAAGGATAAAGTAAAGCATA 58.674 33.333 0.00 0.00 36.77 3.14
255 257 4.622740 GTGCTGTTTTATAGTACGACCGTT 59.377 41.667 0.00 0.00 0.00 4.44
256 258 4.168760 GTGCTGTTTTATAGTACGACCGT 58.831 43.478 0.00 0.00 0.00 4.83
264 266 2.236395 AGCGAGGGTGCTGTTTTATAGT 59.764 45.455 0.00 0.00 45.28 2.12
305 317 1.743996 GAGGATCTTTGTGGAGTGGC 58.256 55.000 0.00 0.00 0.00 5.01
356 368 4.089361 CCCCTGCCTGTAGAAATCTTTTT 58.911 43.478 0.00 0.00 0.00 1.94
357 369 3.701664 CCCCTGCCTGTAGAAATCTTTT 58.298 45.455 0.00 0.00 0.00 2.27
358 370 2.621668 GCCCCTGCCTGTAGAAATCTTT 60.622 50.000 0.00 0.00 0.00 2.52
359 371 1.064389 GCCCCTGCCTGTAGAAATCTT 60.064 52.381 0.00 0.00 0.00 2.40
379 391 4.717991 TGAAAATGTCGGCTAAAACGATG 58.282 39.130 0.00 0.00 42.82 3.84
401 413 9.462606 AATGCTAGCTTTAGTGGTTTATAACTT 57.537 29.630 17.23 0.00 0.00 2.66
430 442 8.896744 CATGTTCTGATGTTTCCACACTATAAT 58.103 33.333 0.00 0.00 35.03 1.28
431 443 7.336679 CCATGTTCTGATGTTTCCACACTATAA 59.663 37.037 0.00 0.00 35.03 0.98
441 453 3.444742 TCCATGCCATGTTCTGATGTTTC 59.555 43.478 3.63 0.00 0.00 2.78
443 455 3.090210 TCCATGCCATGTTCTGATGTT 57.910 42.857 3.63 0.00 0.00 2.71
561 595 2.034687 GGATGATGATGGGGCGGG 59.965 66.667 0.00 0.00 0.00 6.13
562 596 1.002868 GAGGATGATGATGGGGCGG 60.003 63.158 0.00 0.00 0.00 6.13
563 597 1.002868 GGAGGATGATGATGGGGCG 60.003 63.158 0.00 0.00 0.00 6.13
564 598 0.327591 GAGGAGGATGATGATGGGGC 59.672 60.000 0.00 0.00 0.00 5.80
575 609 0.560688 GTGAGGAGGAGGAGGAGGAT 59.439 60.000 0.00 0.00 0.00 3.24
581 615 1.304547 ACGGTGTGAGGAGGAGGAG 60.305 63.158 0.00 0.00 0.00 3.69
582 616 1.304217 GACGGTGTGAGGAGGAGGA 60.304 63.158 0.00 0.00 0.00 3.71
584 618 2.352032 GGGACGGTGTGAGGAGGAG 61.352 68.421 0.00 0.00 0.00 3.69
585 619 2.283676 GGGACGGTGTGAGGAGGA 60.284 66.667 0.00 0.00 0.00 3.71
599 633 3.649981 ACTAGGAGTAGTATAGCACGGGA 59.350 47.826 0.00 0.00 37.76 5.14
600 634 4.018484 ACTAGGAGTAGTATAGCACGGG 57.982 50.000 0.00 0.00 37.76 5.28
601 635 6.709846 AGTTAACTAGGAGTAGTATAGCACGG 59.290 42.308 6.26 0.00 38.66 4.94
602 636 7.727331 AGTTAACTAGGAGTAGTATAGCACG 57.273 40.000 6.26 0.00 38.66 5.34
607 641 9.868160 GGGGTTAAGTTAACTAGGAGTAGTATA 57.132 37.037 21.91 0.00 38.66 1.47
608 642 8.573097 AGGGGTTAAGTTAACTAGGAGTAGTAT 58.427 37.037 21.91 0.00 38.66 2.12
609 643 7.944176 AGGGGTTAAGTTAACTAGGAGTAGTA 58.056 38.462 21.91 0.00 38.66 1.82
610 644 6.809428 AGGGGTTAAGTTAACTAGGAGTAGT 58.191 40.000 21.91 0.00 41.61 2.73
611 645 7.124721 AGAGGGGTTAAGTTAACTAGGAGTAG 58.875 42.308 21.91 0.00 38.68 2.57
612 646 7.049291 AGAGGGGTTAAGTTAACTAGGAGTA 57.951 40.000 21.91 0.00 38.68 2.59
613 647 5.913277 AGAGGGGTTAAGTTAACTAGGAGT 58.087 41.667 21.91 0.00 38.68 3.85
614 648 5.956563 TGAGAGGGGTTAAGTTAACTAGGAG 59.043 44.000 21.91 0.00 38.68 3.69
615 649 5.907421 TGAGAGGGGTTAAGTTAACTAGGA 58.093 41.667 21.91 0.00 38.68 2.94
616 650 6.616237 TTGAGAGGGGTTAAGTTAACTAGG 57.384 41.667 21.91 0.00 38.68 3.02
617 651 9.163899 GAATTTGAGAGGGGTTAAGTTAACTAG 57.836 37.037 21.91 0.00 38.68 2.57
618 652 7.820872 CGAATTTGAGAGGGGTTAAGTTAACTA 59.179 37.037 21.91 0.00 38.68 2.24
619 653 6.653740 CGAATTTGAGAGGGGTTAAGTTAACT 59.346 38.462 21.91 1.12 38.68 2.24
630 664 1.533625 TTGTGCGAATTTGAGAGGGG 58.466 50.000 0.00 0.00 0.00 4.79
668 702 0.604780 GATGGTGGCATGAGGATCCG 60.605 60.000 5.98 0.00 0.00 4.18
679 713 1.744014 GGATGGCAATGATGGTGGC 59.256 57.895 0.00 0.00 41.71 5.01
730 1134 3.912745 AACCGCGGGCCTTTACCAG 62.913 63.158 31.76 0.00 0.00 4.00
745 1158 0.813821 GAAGAAGCCAGCCATGAACC 59.186 55.000 0.00 0.00 0.00 3.62
877 1291 1.303091 AATCCCTGCGCGGTTTGTAC 61.303 55.000 16.49 0.00 0.00 2.90
893 1307 3.847671 AGGGAAATCGAGGGAGAAATC 57.152 47.619 0.00 0.00 0.00 2.17
939 1359 0.662970 CGAGAGCTAGATTCAGCGGC 60.663 60.000 0.00 0.00 46.52 6.53
979 1402 2.258897 GCCTAGCTACGGCCGATC 59.741 66.667 35.90 19.54 41.73 3.69
1054 1489 1.301293 CCTTGGGCTTCCTCCTGTC 59.699 63.158 0.00 0.00 0.00 3.51
1055 1490 2.911926 GCCTTGGGCTTCCTCCTGT 61.912 63.158 0.80 0.00 46.69 4.00
1056 1491 2.044551 GCCTTGGGCTTCCTCCTG 60.045 66.667 0.80 0.00 46.69 3.86
1530 1966 5.793026 CTTAGTAAGCAAGAGAAGCAAGG 57.207 43.478 0.00 0.00 0.00 3.61
1588 2024 7.683704 GCAATAGGCAACAATTCTTCTCATGAT 60.684 37.037 0.00 0.00 43.97 2.45
1590 2026 5.747197 GCAATAGGCAACAATTCTTCTCATG 59.253 40.000 0.00 0.00 43.97 3.07
1607 2043 9.561069 AACTATTAACATAGGTTGAGCAATAGG 57.439 33.333 17.95 6.81 37.31 2.57
1619 2055 9.257651 GGTAGCAACTACAACTATTAACATAGG 57.742 37.037 7.05 0.00 38.58 2.57
1715 2151 4.881019 AAGTTCTGAAGCTCAGCTAAGA 57.119 40.909 0.00 3.35 43.95 2.10
1743 2179 2.096417 CGATCCGGAACAACTGAACAAC 60.096 50.000 9.01 0.00 0.00 3.32
1810 2246 2.735134 CACTACTTGCCAGTTCGGTTAC 59.265 50.000 0.00 0.00 36.97 2.50
1826 2262 8.613482 GGATACTCCTTAAAGCAATTTCACTAC 58.387 37.037 0.00 0.00 32.53 2.73
1933 2370 7.469870 GCAAGAGTACATGTCAGATACTCAGAT 60.470 40.741 21.84 9.44 44.83 2.90
2100 2537 3.055094 GGTGTCTGTTGATCATACCAGGT 60.055 47.826 14.17 0.00 0.00 4.00
2110 2547 0.767375 AGCACCAGGTGTCTGTTGAT 59.233 50.000 21.26 0.00 35.73 2.57
2114 2551 1.750930 CTGAGCACCAGGTGTCTGT 59.249 57.895 21.26 3.59 39.31 3.41
2153 2590 8.007821 TCGCTTATTTTAGCAAATCTAGATCG 57.992 34.615 5.51 1.68 41.28 3.69
2516 3008 7.060383 ACATACATTCAGTCTAATCCAGGAG 57.940 40.000 0.00 0.00 0.00 3.69
2542 3341 5.914898 AAGGAGATTTGTAATTTTCCCGG 57.085 39.130 0.00 0.00 0.00 5.73
2560 3360 6.884295 CACCAGATAACAGGAATTTGTAAGGA 59.116 38.462 0.00 0.00 0.00 3.36
2580 3380 1.605710 CCTGTTCAGTTTCTGCACCAG 59.394 52.381 0.00 0.00 27.06 4.00
2582 3382 0.954452 CCCTGTTCAGTTTCTGCACC 59.046 55.000 0.00 0.00 27.06 5.01
2756 3556 3.315749 TGTTACGCAACGGAAAAGGAAAT 59.684 39.130 0.00 0.00 37.48 2.17
2768 3568 4.782195 GCACTATGTATGCTGTTACGCAAC 60.782 45.833 6.06 0.00 44.06 4.17
2788 3588 2.027745 TGAAATGAGAGTGAGGGAGCAC 60.028 50.000 0.00 0.00 39.05 4.40
2794 3594 4.582869 TCACCATTGAAATGAGAGTGAGG 58.417 43.478 4.58 0.00 38.70 3.86
2841 3641 5.047660 TGCAATTGGTTTAACAGGGACATAC 60.048 40.000 7.72 0.00 0.00 2.39
2842 3642 5.080337 TGCAATTGGTTTAACAGGGACATA 58.920 37.500 7.72 0.00 0.00 2.29
2845 3645 4.535526 ATGCAATTGGTTTAACAGGGAC 57.464 40.909 7.72 0.00 0.00 4.46
2847 3647 9.097257 CTTATAAATGCAATTGGTTTAACAGGG 57.903 33.333 7.72 0.00 36.10 4.45
2871 3718 6.093909 CACAAAAGAAACAGGAAAATTGCCTT 59.906 34.615 0.00 0.00 32.12 4.35
2874 3721 6.091986 TGTCACAAAAGAAACAGGAAAATTGC 59.908 34.615 0.00 0.00 0.00 3.56
2920 3767 3.890756 TGGAATCATGTAACCATGGATGC 59.109 43.478 21.47 11.51 46.96 3.91
3054 3901 3.756963 GGATGTAGTTGGAACTTGGAACC 59.243 47.826 0.00 0.00 40.37 3.62
3294 4147 7.543868 TCATGCATTTTATTTCCAAGTTTACGG 59.456 33.333 0.00 0.00 0.00 4.02
3303 4156 8.920174 AGATCTGAATCATGCATTTTATTTCCA 58.080 29.630 0.00 0.00 34.07 3.53
3333 4186 3.693807 ACTCACAGCATCCATCAACATT 58.306 40.909 0.00 0.00 0.00 2.71
3459 4316 6.494666 ACGAATTCTCCATAATCAAGGGTA 57.505 37.500 3.52 0.00 0.00 3.69
3537 4394 6.931281 TCTTGTCTTGGTCAAAGTATGAGAAG 59.069 38.462 0.00 0.00 39.19 2.85
3549 4406 1.507140 ACCCACTCTTGTCTTGGTCA 58.493 50.000 0.00 0.00 0.00 4.02
3558 4415 6.471233 TCAATCTCTATGTACCCACTCTTG 57.529 41.667 0.00 0.00 0.00 3.02
3588 4445 3.558746 CCTCATCAGTCAAAGCCACTCTT 60.559 47.826 0.00 0.00 36.34 2.85
3747 4604 8.657729 GGTTTCAGTTTTCAGTAGTAGATAAGC 58.342 37.037 0.00 0.00 0.00 3.09
3841 4698 4.021719 AGCAACATTTGAATCCTGAACCAG 60.022 41.667 0.00 0.00 0.00 4.00
3897 4764 3.307782 GCAATGATAGCAATTGCCAACAC 59.692 43.478 26.45 13.83 43.34 3.32
3975 4842 3.488553 GCCGCTTATTTTATGGTGTCCAC 60.489 47.826 0.00 0.00 35.80 4.02
3981 4848 4.465886 TGGTATGCCGCTTATTTTATGGT 58.534 39.130 0.00 0.00 37.67 3.55
3996 4863 2.489938 TCCTTGTCTGGTTGGTATGC 57.510 50.000 0.00 0.00 0.00 3.14
4091 5119 2.376695 ATGCATTTGATCCTCAGGGG 57.623 50.000 0.00 0.00 0.00 4.79
4106 5134 4.558226 ATTCTTGACTGTCTGGTATGCA 57.442 40.909 9.51 0.00 0.00 3.96
4164 5194 1.127567 TCCTTGTGACCTGGTCTGGG 61.128 60.000 26.03 20.19 33.15 4.45
4209 5248 5.177881 TGCAGCTTTCAATTGCAAATTGTAG 59.822 36.000 1.71 11.10 44.13 2.74
4254 5293 3.830178 TCGATGTCAGGGTTGAACTTAGA 59.170 43.478 0.00 0.00 34.49 2.10
4471 5510 0.320247 AGCACCTCGTCTGCTTCTTG 60.320 55.000 0.00 0.00 42.54 3.02
4477 5516 0.601311 AAACAGAGCACCTCGTCTGC 60.601 55.000 0.00 0.00 43.48 4.26
4613 5652 6.546395 CGAAGGAAAATGAAAATCTGACGAT 58.454 36.000 0.00 0.00 0.00 3.73
4690 5752 5.597813 ACGATCTTCTTTACAAGCAACAG 57.402 39.130 0.00 0.00 0.00 3.16
4784 5846 1.085091 GCTGATGAGTGCAAGACCAG 58.915 55.000 0.00 0.00 0.00 4.00
4816 5878 1.770957 CAAAGGTGAAAAGCCGAAGC 58.229 50.000 0.00 0.00 40.32 3.86
4817 5879 1.338020 AGCAAAGGTGAAAAGCCGAAG 59.662 47.619 0.00 0.00 0.00 3.79
4818 5880 1.066908 CAGCAAAGGTGAAAAGCCGAA 59.933 47.619 0.00 0.00 32.22 4.30
4819 5881 0.667993 CAGCAAAGGTGAAAAGCCGA 59.332 50.000 0.00 0.00 32.22 5.54
4820 5882 0.940991 GCAGCAAAGGTGAAAAGCCG 60.941 55.000 0.00 0.00 32.22 5.52
4882 5980 0.249741 CGACAAACCGGAACCTCTGT 60.250 55.000 9.46 1.12 0.00 3.41
4905 6003 0.743688 TGCATCTGTTTGCCGTGTTT 59.256 45.000 0.00 0.00 42.06 2.83
4917 6015 1.303799 ACGGCAGAAGCTTGCATCTG 61.304 55.000 19.53 19.53 45.86 2.90
4936 6034 4.000325 CACGACCAAATAACCTGTCATCA 59.000 43.478 0.00 0.00 0.00 3.07
4937 6035 3.181510 GCACGACCAAATAACCTGTCATC 60.182 47.826 0.00 0.00 0.00 2.92
4938 6036 2.747446 GCACGACCAAATAACCTGTCAT 59.253 45.455 0.00 0.00 0.00 3.06
5086 6201 5.511729 GGATTATTTTGCAAACTGAGCGTAC 59.488 40.000 12.39 0.00 33.85 3.67
5089 6204 4.737054 AGGATTATTTTGCAAACTGAGCG 58.263 39.130 12.39 0.00 33.85 5.03
5093 6208 6.071165 AGGAGGAAGGATTATTTTGCAAACTG 60.071 38.462 12.39 0.00 0.00 3.16
5108 6365 5.219739 ACATATTAGCAAGAGGAGGAAGGA 58.780 41.667 0.00 0.00 0.00 3.36
5129 6386 6.266323 GCATACGAGAAGATTCTTCAGTACA 58.734 40.000 24.51 12.32 37.73 2.90
5130 6387 5.688176 GGCATACGAGAAGATTCTTCAGTAC 59.312 44.000 24.51 16.25 37.73 2.73
5131 6388 5.221263 GGGCATACGAGAAGATTCTTCAGTA 60.221 44.000 24.51 24.29 37.73 2.74
5132 6389 4.442192 GGGCATACGAGAAGATTCTTCAGT 60.442 45.833 24.51 23.26 37.73 3.41
5136 6393 3.452627 ACTGGGCATACGAGAAGATTCTT 59.547 43.478 0.00 0.00 37.73 2.52
5142 6399 2.032620 AGGTACTGGGCATACGAGAAG 58.967 52.381 0.00 0.00 37.18 2.85
5147 6404 2.396590 ACAAAGGTACTGGGCATACG 57.603 50.000 0.00 0.00 40.86 3.06
5157 6414 8.263940 TGAAATCACTGCTTATACAAAGGTAC 57.736 34.615 0.00 0.00 30.94 3.34
5160 6417 9.294030 GATTTGAAATCACTGCTTATACAAAGG 57.706 33.333 12.73 0.00 0.00 3.11
5256 6513 3.312890 CAGGTCTGAAGGGATCCAGTAT 58.687 50.000 15.23 0.00 0.00 2.12
5328 6595 7.939039 CGGATCATAGGCCCAACAATTATATAT 59.061 37.037 0.00 0.00 0.00 0.86
5340 6609 1.045407 GTGTACGGATCATAGGCCCA 58.955 55.000 0.00 0.00 0.00 5.36
5371 6640 0.446222 CGTGGCCTATTTGTCAACCG 59.554 55.000 3.32 0.00 0.00 4.44
5402 6682 1.953017 CCCTGACCGAGATAGCGAG 59.047 63.158 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.