Multiple sequence alignment - TraesCS5B01G473400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G473400 chr5B 100.000 2457 0 0 1 2457 647464973 647462517 0.000000e+00 4538
1 TraesCS5B01G473400 chr5B 94.656 1815 90 4 152 1959 647405620 647403806 0.000000e+00 2808
2 TraesCS5B01G473400 chr5B 90.623 1941 146 17 152 2077 647698889 647696970 0.000000e+00 2543
3 TraesCS5B01G473400 chr5B 89.274 317 32 2 152 468 647659775 647659461 1.770000e-106 396
4 TraesCS5B01G473400 chr5B 94.416 197 11 0 2261 2457 705485865 705486061 1.100000e-78 303
5 TraesCS5B01G473400 chr5B 91.257 183 12 4 1 182 162350648 162350827 1.890000e-61 246
6 TraesCS5B01G473400 chr5B 90.741 162 13 2 2108 2267 387769693 387769854 5.320000e-52 215
7 TraesCS5B01G473400 chr5D 92.157 1938 132 11 152 2077 514996513 514994584 0.000000e+00 2719
8 TraesCS5B01G473400 chr5D 92.002 1938 137 11 152 2077 515025870 515023939 0.000000e+00 2704
9 TraesCS5B01G473400 chr5D 91.499 1941 141 14 152 2077 514948668 514946737 0.000000e+00 2649
10 TraesCS5B01G473400 chr5D 91.486 1938 140 14 152 2077 514975076 514973152 0.000000e+00 2641
11 TraesCS5B01G473400 chr5A 88.287 1938 194 20 161 2077 643029622 643027697 0.000000e+00 2290
12 TraesCS5B01G473400 chr5A 87.868 1937 204 21 161 2078 643042713 643040789 0.000000e+00 2246
13 TraesCS5B01G473400 chr5A 88.757 1850 173 22 247 2078 643034526 643032694 0.000000e+00 2231
14 TraesCS5B01G473400 chr4B 95.431 197 9 0 2261 2457 7742312 7742116 5.100000e-82 315
15 TraesCS5B01G473400 chr4B 96.795 156 4 1 1 156 99660557 99660711 2.420000e-65 259
16 TraesCS5B01G473400 chr4B 94.048 168 8 2 1 168 622411948 622411783 1.130000e-63 254
17 TraesCS5B01G473400 chr4B 92.697 178 8 4 1 177 592265142 592264969 4.060000e-63 252
18 TraesCS5B01G473400 chr1B 94.416 197 11 0 2261 2457 574185632 574185828 1.100000e-78 303
19 TraesCS5B01G473400 chr1B 94.359 195 11 0 2263 2457 574163420 574163614 1.430000e-77 300
20 TraesCS5B01G473400 chr7B 93.909 197 12 0 2261 2457 182073105 182073301 5.140000e-77 298
21 TraesCS5B01G473400 chr7B 91.710 193 16 0 2260 2452 615733773 615733965 4.030000e-68 268
22 TraesCS5B01G473400 chr7B 94.643 168 6 3 1 167 439685925 439686090 8.720000e-65 257
23 TraesCS5B01G473400 chr7B 89.899 198 20 0 2260 2457 153594281 153594084 3.140000e-64 255
24 TraesCS5B01G473400 chr7D 91.584 202 16 1 2256 2457 78193951 78193751 6.690000e-71 278
25 TraesCS5B01G473400 chr3B 96.795 156 5 0 1 156 561524346 561524191 6.740000e-66 261
26 TraesCS5B01G473400 chr3B 93.491 169 9 2 8 175 309752792 309752625 1.460000e-62 250
27 TraesCS5B01G473400 chr2B 94.578 166 7 2 1 166 616092364 616092527 3.140000e-64 255
28 TraesCS5B01G473400 chr6B 94.545 165 7 2 1 165 631686091 631685929 1.130000e-63 254
29 TraesCS5B01G473400 chr4A 89.848 197 20 0 2261 2457 6794527 6794723 1.130000e-63 254


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G473400 chr5B 647462517 647464973 2456 True 4538.0 4538 100.000 1 2457 1 chr5B.!!$R2 2456
1 TraesCS5B01G473400 chr5B 647403806 647405620 1814 True 2808.0 2808 94.656 152 1959 1 chr5B.!!$R1 1807
2 TraesCS5B01G473400 chr5B 647696970 647698889 1919 True 2543.0 2543 90.623 152 2077 1 chr5B.!!$R4 1925
3 TraesCS5B01G473400 chr5D 514994584 514996513 1929 True 2719.0 2719 92.157 152 2077 1 chr5D.!!$R3 1925
4 TraesCS5B01G473400 chr5D 515023939 515025870 1931 True 2704.0 2704 92.002 152 2077 1 chr5D.!!$R4 1925
5 TraesCS5B01G473400 chr5D 514946737 514948668 1931 True 2649.0 2649 91.499 152 2077 1 chr5D.!!$R1 1925
6 TraesCS5B01G473400 chr5D 514973152 514975076 1924 True 2641.0 2641 91.486 152 2077 1 chr5D.!!$R2 1925
7 TraesCS5B01G473400 chr5A 643027697 643034526 6829 True 2260.5 2290 88.522 161 2078 2 chr5A.!!$R2 1917
8 TraesCS5B01G473400 chr5A 643040789 643042713 1924 True 2246.0 2246 87.868 161 2078 1 chr5A.!!$R1 1917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 282 0.321653 ATTGTCTCCGTCCCAAGTGC 60.322 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2189 2791 0.253044 GCCACATGCCAGTAGAAGGA 59.747 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.176752 GGCTGGGCCTCCGGTTAG 62.177 72.222 4.53 0.00 46.69 2.34
41 42 3.400054 GCTGGGCCTCCGGTTAGT 61.400 66.667 4.53 0.00 41.53 2.24
42 43 2.062177 GCTGGGCCTCCGGTTAGTA 61.062 63.158 4.53 0.00 41.53 1.82
43 44 2.029307 GCTGGGCCTCCGGTTAGTAG 62.029 65.000 4.53 0.00 41.53 2.57
44 45 1.382146 TGGGCCTCCGGTTAGTAGG 60.382 63.158 4.53 0.51 35.24 3.18
45 46 1.382283 GGGCCTCCGGTTAGTAGGT 60.382 63.158 0.84 0.00 32.67 3.08
46 47 0.979709 GGGCCTCCGGTTAGTAGGTT 60.980 60.000 0.84 0.00 32.67 3.50
47 48 1.689258 GGGCCTCCGGTTAGTAGGTTA 60.689 57.143 0.84 0.00 32.67 2.85
48 49 1.685517 GGCCTCCGGTTAGTAGGTTAG 59.314 57.143 0.00 0.00 32.67 2.34
49 50 2.382882 GCCTCCGGTTAGTAGGTTAGT 58.617 52.381 0.00 0.00 32.67 2.24
50 51 2.360483 GCCTCCGGTTAGTAGGTTAGTC 59.640 54.545 0.00 0.00 32.67 2.59
51 52 2.954989 CCTCCGGTTAGTAGGTTAGTCC 59.045 54.545 0.00 0.00 0.00 3.85
52 53 2.954989 CTCCGGTTAGTAGGTTAGTCCC 59.045 54.545 0.00 0.00 36.75 4.46
53 54 2.311542 TCCGGTTAGTAGGTTAGTCCCA 59.688 50.000 0.00 0.00 36.75 4.37
54 55 3.099141 CCGGTTAGTAGGTTAGTCCCAA 58.901 50.000 0.00 0.00 36.75 4.12
55 56 3.515104 CCGGTTAGTAGGTTAGTCCCAAA 59.485 47.826 0.00 0.00 36.75 3.28
56 57 4.020307 CCGGTTAGTAGGTTAGTCCCAAAA 60.020 45.833 0.00 0.00 36.75 2.44
57 58 5.512921 CCGGTTAGTAGGTTAGTCCCAAAAA 60.513 44.000 0.00 0.00 36.75 1.94
58 59 6.175471 CGGTTAGTAGGTTAGTCCCAAAAAT 58.825 40.000 0.00 0.00 36.75 1.82
59 60 6.093082 CGGTTAGTAGGTTAGTCCCAAAAATG 59.907 42.308 0.00 0.00 36.75 2.32
60 61 7.170277 GGTTAGTAGGTTAGTCCCAAAAATGA 58.830 38.462 0.00 0.00 36.75 2.57
61 62 7.832685 GGTTAGTAGGTTAGTCCCAAAAATGAT 59.167 37.037 0.00 0.00 36.75 2.45
62 63 9.895138 GTTAGTAGGTTAGTCCCAAAAATGATA 57.105 33.333 0.00 0.00 36.75 2.15
84 85 9.742144 TGATATAAAAGTGTAAAGTAAAGCCCA 57.258 29.630 0.00 0.00 0.00 5.36
90 91 7.826918 AAGTGTAAAGTAAAGCCCATAAACA 57.173 32.000 0.00 0.00 0.00 2.83
91 92 8.417273 AAGTGTAAAGTAAAGCCCATAAACAT 57.583 30.769 0.00 0.00 0.00 2.71
92 93 8.051901 AGTGTAAAGTAAAGCCCATAAACATC 57.948 34.615 0.00 0.00 0.00 3.06
93 94 7.122204 AGTGTAAAGTAAAGCCCATAAACATCC 59.878 37.037 0.00 0.00 0.00 3.51
94 95 6.948886 TGTAAAGTAAAGCCCATAAACATCCA 59.051 34.615 0.00 0.00 0.00 3.41
95 96 6.926630 AAAGTAAAGCCCATAAACATCCAA 57.073 33.333 0.00 0.00 0.00 3.53
96 97 6.926630 AAGTAAAGCCCATAAACATCCAAA 57.073 33.333 0.00 0.00 0.00 3.28
97 98 6.926630 AGTAAAGCCCATAAACATCCAAAA 57.073 33.333 0.00 0.00 0.00 2.44
98 99 6.697395 AGTAAAGCCCATAAACATCCAAAAC 58.303 36.000 0.00 0.00 0.00 2.43
99 100 3.866883 AGCCCATAAACATCCAAAACG 57.133 42.857 0.00 0.00 0.00 3.60
100 101 2.495669 AGCCCATAAACATCCAAAACGG 59.504 45.455 0.00 0.00 0.00 4.44
101 102 2.418060 GCCCATAAACATCCAAAACGGG 60.418 50.000 0.00 0.00 34.36 5.28
102 103 2.829120 CCCATAAACATCCAAAACGGGT 59.171 45.455 0.00 0.00 34.36 5.28
103 104 4.017808 CCCATAAACATCCAAAACGGGTA 58.982 43.478 0.00 0.00 34.36 3.69
104 105 4.463186 CCCATAAACATCCAAAACGGGTAA 59.537 41.667 0.00 0.00 34.36 2.85
105 106 5.128008 CCCATAAACATCCAAAACGGGTAAT 59.872 40.000 0.00 0.00 34.36 1.89
106 107 6.321690 CCCATAAACATCCAAAACGGGTAATA 59.678 38.462 0.00 0.00 34.36 0.98
107 108 7.014808 CCCATAAACATCCAAAACGGGTAATAT 59.985 37.037 0.00 0.00 34.36 1.28
108 109 9.069082 CCATAAACATCCAAAACGGGTAATATA 57.931 33.333 0.00 0.00 34.36 0.86
113 114 8.331730 ACATCCAAAACGGGTAATATAATAGC 57.668 34.615 0.00 0.00 34.36 2.97
114 115 7.940137 ACATCCAAAACGGGTAATATAATAGCA 59.060 33.333 0.00 0.00 34.36 3.49
115 116 8.956426 CATCCAAAACGGGTAATATAATAGCAT 58.044 33.333 0.00 0.00 34.36 3.79
116 117 8.330466 TCCAAAACGGGTAATATAATAGCATG 57.670 34.615 0.00 0.00 34.36 4.06
117 118 8.158132 TCCAAAACGGGTAATATAATAGCATGA 58.842 33.333 0.00 0.00 34.36 3.07
118 119 8.788806 CCAAAACGGGTAATATAATAGCATGAA 58.211 33.333 0.00 0.00 0.00 2.57
121 122 8.911918 AACGGGTAATATAATAGCATGAAACA 57.088 30.769 0.00 0.00 0.00 2.83
122 123 8.911918 ACGGGTAATATAATAGCATGAAACAA 57.088 30.769 0.00 0.00 0.00 2.83
123 124 9.515226 ACGGGTAATATAATAGCATGAAACAAT 57.485 29.630 0.00 0.00 0.00 2.71
273 282 0.321653 ATTGTCTCCGTCCCAAGTGC 60.322 55.000 0.00 0.00 0.00 4.40
275 284 3.319198 TCTCCGTCCCAAGTGCCC 61.319 66.667 0.00 0.00 0.00 5.36
439 449 8.618702 TGAACACAATGCATTAAATTTTCCAT 57.381 26.923 12.53 0.00 0.00 3.41
540 555 2.025037 TGGCCTCCAATCACTTTAGCAT 60.025 45.455 3.32 0.00 0.00 3.79
942 967 7.119709 TGAGGAATCGACCACTATTTCATTA 57.880 36.000 0.00 0.00 0.00 1.90
943 968 7.735917 TGAGGAATCGACCACTATTTCATTAT 58.264 34.615 0.00 0.00 0.00 1.28
944 969 8.210946 TGAGGAATCGACCACTATTTCATTATT 58.789 33.333 0.00 0.00 0.00 1.40
945 970 9.706691 GAGGAATCGACCACTATTTCATTATTA 57.293 33.333 0.00 0.00 0.00 0.98
1267 1292 4.439305 AATGCACGCAATGTTCAAGTAT 57.561 36.364 0.00 0.00 0.00 2.12
1462 1487 5.767816 TCGCTGTCACTGCTTAATAGATA 57.232 39.130 5.02 0.00 0.00 1.98
1464 1489 6.749139 TCGCTGTCACTGCTTAATAGATATT 58.251 36.000 5.02 0.00 0.00 1.28
1537 1563 2.882761 TGCTAGCTCATGATGAATTGGC 59.117 45.455 17.23 2.20 0.00 4.52
1538 1564 3.147629 GCTAGCTCATGATGAATTGGCT 58.852 45.455 7.70 10.99 0.00 4.75
1547 1577 7.553402 GCTCATGATGAATTGGCTATAGAAGAT 59.447 37.037 3.21 0.00 0.00 2.40
1621 1651 9.967451 TGATAAACCAACATCTATTTGGACTAA 57.033 29.630 8.10 0.00 45.69 2.24
1716 1748 7.113658 ACGATTATGAAGGTCTATCACAGTT 57.886 36.000 0.00 0.00 0.00 3.16
1727 1759 9.739276 AAGGTCTATCACAGTTAATTGAATTCA 57.261 29.630 3.38 3.38 0.00 2.57
1773 1805 4.592778 ACCAAAAGTACAAAGCATCCCAAT 59.407 37.500 0.00 0.00 0.00 3.16
1774 1806 5.777732 ACCAAAAGTACAAAGCATCCCAATA 59.222 36.000 0.00 0.00 0.00 1.90
1811 1843 3.045601 AGACGTTCTTGGACCATCAAG 57.954 47.619 0.00 0.00 43.91 3.02
1813 1845 1.202758 ACGTTCTTGGACCATCAAGCA 60.203 47.619 0.00 0.00 42.68 3.91
1824 1856 1.610624 CCATCAAGCAACCACTACCGT 60.611 52.381 0.00 0.00 0.00 4.83
1867 1899 2.454832 CTTGTCGGAGCTGGCCTGAA 62.455 60.000 14.77 0.00 0.00 3.02
1922 1954 1.205055 GCCCTTAAGGACTAGTGCCT 58.795 55.000 23.74 9.21 38.24 4.75
1943 1975 1.542767 CGGAGCCCTAGTCATCGAGTA 60.543 57.143 0.00 0.00 0.00 2.59
1945 1978 2.957006 GGAGCCCTAGTCATCGAGTAAA 59.043 50.000 0.00 0.00 0.00 2.01
1963 1996 9.079833 TCGAGTAAATTTAACAAACTAGATCCG 57.920 33.333 0.00 0.00 0.00 4.18
1978 2011 5.598830 ACTAGATCCGTCAATCCAGTAACAT 59.401 40.000 0.00 0.00 27.73 2.71
2016 2049 1.889545 GGATATGCTCCTGCTTGGTC 58.110 55.000 0.00 0.00 41.29 4.02
2020 2053 1.289160 ATGCTCCTGCTTGGTCCTTA 58.711 50.000 0.00 0.00 40.48 2.69
2078 2117 9.665264 GATTTTAGTAGAGTTGTTTCAAACAGG 57.335 33.333 2.58 0.00 43.27 4.00
2079 2118 7.562454 TTTAGTAGAGTTGTTTCAAACAGGG 57.438 36.000 2.58 0.00 43.27 4.45
2080 2119 5.367945 AGTAGAGTTGTTTCAAACAGGGA 57.632 39.130 2.58 0.00 43.27 4.20
2083 2122 6.833933 AGTAGAGTTGTTTCAAACAGGGAAAT 59.166 34.615 2.58 0.00 43.27 2.17
2084 2123 6.149129 AGAGTTGTTTCAAACAGGGAAATC 57.851 37.500 2.58 0.00 43.27 2.17
2085 2124 5.069119 AGAGTTGTTTCAAACAGGGAAATCC 59.931 40.000 2.58 0.00 43.27 3.01
2098 2700 0.746659 GAAATCCCATTTGGCTCCCG 59.253 55.000 0.00 0.00 31.47 5.14
2102 2704 1.304052 CCCATTTGGCTCCCGAACA 60.304 57.895 0.00 0.00 28.54 3.18
2103 2705 1.595093 CCCATTTGGCTCCCGAACAC 61.595 60.000 0.00 0.00 28.54 3.32
2105 2707 1.176527 CATTTGGCTCCCGAACACAT 58.823 50.000 0.00 0.00 28.54 3.21
2107 2709 0.400213 TTTGGCTCCCGAACACATCT 59.600 50.000 0.00 0.00 0.00 2.90
2110 2712 1.837439 TGGCTCCCGAACACATCTAAT 59.163 47.619 0.00 0.00 0.00 1.73
2114 2716 1.411246 TCCCGAACACATCTAATCCCG 59.589 52.381 0.00 0.00 0.00 5.14
2119 2721 5.103000 CCGAACACATCTAATCCCGATATC 58.897 45.833 0.00 0.00 0.00 1.63
2123 2725 7.698550 CGAACACATCTAATCCCGATATCTAAG 59.301 40.741 0.34 0.00 0.00 2.18
2124 2726 6.868622 ACACATCTAATCCCGATATCTAAGC 58.131 40.000 0.34 0.00 0.00 3.09
2126 2728 5.067936 ACATCTAATCCCGATATCTAAGCCG 59.932 44.000 0.34 0.00 0.00 5.52
2127 2729 4.851843 TCTAATCCCGATATCTAAGCCGA 58.148 43.478 0.34 0.00 0.00 5.54
2129 2731 4.657436 AATCCCGATATCTAAGCCGATC 57.343 45.455 0.34 0.00 0.00 3.69
2132 2734 4.023980 TCCCGATATCTAAGCCGATCAAT 58.976 43.478 0.34 0.00 0.00 2.57
2133 2735 4.115516 CCCGATATCTAAGCCGATCAATG 58.884 47.826 0.34 0.00 0.00 2.82
2134 2736 4.382040 CCCGATATCTAAGCCGATCAATGT 60.382 45.833 0.34 0.00 0.00 2.71
2136 2738 5.289675 CCGATATCTAAGCCGATCAATGTTC 59.710 44.000 0.34 0.00 0.00 3.18
2139 2741 5.998454 ATCTAAGCCGATCAATGTTCTTG 57.002 39.130 0.00 0.00 0.00 3.02
2140 2742 2.927553 AAGCCGATCAATGTTCTTGC 57.072 45.000 0.00 0.00 0.00 4.01
2141 2743 0.729116 AGCCGATCAATGTTCTTGCG 59.271 50.000 0.00 0.00 0.00 4.85
2142 2744 0.726827 GCCGATCAATGTTCTTGCGA 59.273 50.000 0.00 0.00 0.00 5.10
2143 2745 1.331756 GCCGATCAATGTTCTTGCGAT 59.668 47.619 0.00 0.00 0.00 4.58
2144 2746 2.223340 GCCGATCAATGTTCTTGCGATT 60.223 45.455 0.00 0.00 0.00 3.34
2145 2747 3.611517 CCGATCAATGTTCTTGCGATTC 58.388 45.455 0.00 0.00 0.00 2.52
2147 2749 4.512657 CGATCAATGTTCTTGCGATTCTC 58.487 43.478 0.00 0.00 0.00 2.87
2148 2750 3.997319 TCAATGTTCTTGCGATTCTCG 57.003 42.857 0.00 0.00 43.89 4.04
2158 2760 3.575297 CGATTCTCGCTGCTTGTTG 57.425 52.632 0.00 0.00 31.14 3.33
2160 2762 1.992667 CGATTCTCGCTGCTTGTTGTA 59.007 47.619 0.00 0.00 31.14 2.41
2162 2764 3.062639 CGATTCTCGCTGCTTGTTGTATT 59.937 43.478 0.00 0.00 31.14 1.89
2164 2766 5.555256 CGATTCTCGCTGCTTGTTGTATTAG 60.555 44.000 0.00 0.00 31.14 1.73
2165 2767 3.521560 TCTCGCTGCTTGTTGTATTAGG 58.478 45.455 0.00 0.00 0.00 2.69
2166 2768 2.609459 CTCGCTGCTTGTTGTATTAGGG 59.391 50.000 0.00 0.00 0.00 3.53
2167 2769 2.027561 TCGCTGCTTGTTGTATTAGGGT 60.028 45.455 0.00 0.00 0.00 4.34
2169 2771 2.683362 GCTGCTTGTTGTATTAGGGTCC 59.317 50.000 0.00 0.00 0.00 4.46
2171 2773 4.383770 GCTGCTTGTTGTATTAGGGTCCTA 60.384 45.833 0.00 0.00 0.00 2.94
2173 2775 6.321821 TGCTTGTTGTATTAGGGTCCTATT 57.678 37.500 0.00 0.00 0.00 1.73
2174 2776 6.727394 TGCTTGTTGTATTAGGGTCCTATTT 58.273 36.000 0.00 0.00 0.00 1.40
2175 2777 7.179269 TGCTTGTTGTATTAGGGTCCTATTTT 58.821 34.615 0.00 0.00 0.00 1.82
2176 2778 7.338449 TGCTTGTTGTATTAGGGTCCTATTTTC 59.662 37.037 0.00 0.00 0.00 2.29
2177 2779 7.338449 GCTTGTTGTATTAGGGTCCTATTTTCA 59.662 37.037 0.00 0.00 0.00 2.69
2178 2780 8.801882 TTGTTGTATTAGGGTCCTATTTTCAG 57.198 34.615 0.00 0.00 0.00 3.02
2180 2782 8.044908 TGTTGTATTAGGGTCCTATTTTCAGAC 58.955 37.037 0.00 0.00 0.00 3.51
2181 2783 6.812998 TGTATTAGGGTCCTATTTTCAGACG 58.187 40.000 0.00 0.00 0.00 4.18
2183 2785 1.838077 AGGGTCCTATTTTCAGACGGG 59.162 52.381 0.00 0.00 0.00 5.28
2184 2786 1.134189 GGGTCCTATTTTCAGACGGGG 60.134 57.143 0.00 0.00 0.00 5.73
2185 2787 1.134189 GGTCCTATTTTCAGACGGGGG 60.134 57.143 0.00 0.00 0.00 5.40
2186 2788 1.558294 GTCCTATTTTCAGACGGGGGT 59.442 52.381 0.00 0.00 0.00 4.95
2187 2789 1.835531 TCCTATTTTCAGACGGGGGTC 59.164 52.381 0.00 0.00 0.00 4.46
2189 2791 2.238898 CCTATTTTCAGACGGGGGTCTT 59.761 50.000 0.00 0.00 0.00 3.01
2190 2792 2.491675 ATTTTCAGACGGGGGTCTTC 57.508 50.000 0.00 0.00 0.00 2.87
2191 2793 0.399075 TTTTCAGACGGGGGTCTTCC 59.601 55.000 0.00 0.00 0.00 3.46
2192 2794 0.473117 TTTCAGACGGGGGTCTTCCT 60.473 55.000 0.00 0.00 35.33 3.36
2193 2795 0.473117 TTCAGACGGGGGTCTTCCTT 60.473 55.000 0.00 0.00 35.33 3.36
2194 2796 0.903454 TCAGACGGGGGTCTTCCTTC 60.903 60.000 0.00 0.00 35.33 3.46
2195 2797 0.905337 CAGACGGGGGTCTTCCTTCT 60.905 60.000 0.00 0.00 35.33 2.85
2196 2798 0.708802 AGACGGGGGTCTTCCTTCTA 59.291 55.000 0.00 0.00 35.33 2.10
2197 2799 0.822811 GACGGGGGTCTTCCTTCTAC 59.177 60.000 0.00 0.00 35.33 2.59
2198 2800 0.412640 ACGGGGGTCTTCCTTCTACT 59.587 55.000 0.00 0.00 35.33 2.57
2199 2801 0.824759 CGGGGGTCTTCCTTCTACTG 59.175 60.000 0.00 0.00 35.33 2.74
2200 2802 1.205055 GGGGGTCTTCCTTCTACTGG 58.795 60.000 0.00 0.00 35.33 4.00
2201 2803 0.542333 GGGGTCTTCCTTCTACTGGC 59.458 60.000 0.00 0.00 35.33 4.85
2202 2804 1.276622 GGGTCTTCCTTCTACTGGCA 58.723 55.000 0.00 0.00 0.00 4.92
2203 2805 1.840635 GGGTCTTCCTTCTACTGGCAT 59.159 52.381 0.00 0.00 0.00 4.40
2204 2806 2.420687 GGGTCTTCCTTCTACTGGCATG 60.421 54.545 0.00 0.00 0.00 4.06
2205 2807 2.237392 GGTCTTCCTTCTACTGGCATGT 59.763 50.000 0.00 0.00 0.00 3.21
2206 2808 3.265791 GTCTTCCTTCTACTGGCATGTG 58.734 50.000 0.00 0.00 0.00 3.21
2207 2809 2.237143 TCTTCCTTCTACTGGCATGTGG 59.763 50.000 0.00 0.00 0.00 4.17
2208 2810 0.253044 TCCTTCTACTGGCATGTGGC 59.747 55.000 0.00 0.00 43.74 5.01
2220 2822 2.756400 TGTGGCCCACATCTGACC 59.244 61.111 13.83 0.00 39.62 4.02
2221 2823 1.847506 TGTGGCCCACATCTGACCT 60.848 57.895 13.83 0.00 39.62 3.85
2222 2824 1.377725 GTGGCCCACATCTGACCTG 60.378 63.158 9.55 0.00 34.08 4.00
2223 2825 2.439156 GGCCCACATCTGACCTGC 60.439 66.667 0.00 0.00 0.00 4.85
2224 2826 2.352422 GCCCACATCTGACCTGCA 59.648 61.111 0.00 0.00 0.00 4.41
2225 2827 1.303561 GCCCACATCTGACCTGCAA 60.304 57.895 0.00 0.00 0.00 4.08
2226 2828 0.682209 GCCCACATCTGACCTGCAAT 60.682 55.000 0.00 0.00 0.00 3.56
2227 2829 1.408683 GCCCACATCTGACCTGCAATA 60.409 52.381 0.00 0.00 0.00 1.90
2228 2830 2.945440 GCCCACATCTGACCTGCAATAA 60.945 50.000 0.00 0.00 0.00 1.40
2229 2831 3.559069 CCCACATCTGACCTGCAATAAT 58.441 45.455 0.00 0.00 0.00 1.28
2230 2832 3.956199 CCCACATCTGACCTGCAATAATT 59.044 43.478 0.00 0.00 0.00 1.40
2231 2833 5.132502 CCCACATCTGACCTGCAATAATTA 58.867 41.667 0.00 0.00 0.00 1.40
2232 2834 5.593909 CCCACATCTGACCTGCAATAATTAA 59.406 40.000 0.00 0.00 0.00 1.40
2233 2835 6.460123 CCCACATCTGACCTGCAATAATTAAC 60.460 42.308 0.00 0.00 0.00 2.01
2234 2836 6.095300 CCACATCTGACCTGCAATAATTAACA 59.905 38.462 0.00 0.00 0.00 2.41
2235 2837 7.191551 CACATCTGACCTGCAATAATTAACAG 58.808 38.462 6.56 6.56 0.00 3.16
2241 2843 4.574599 CTGCAATAATTAACAGGAGCCC 57.425 45.455 0.00 0.00 0.00 5.19
2242 2844 2.948979 TGCAATAATTAACAGGAGCCCG 59.051 45.455 0.00 0.00 0.00 6.13
2243 2845 2.949644 GCAATAATTAACAGGAGCCCGT 59.050 45.455 0.00 0.00 0.00 5.28
2244 2846 3.380320 GCAATAATTAACAGGAGCCCGTT 59.620 43.478 0.00 0.00 0.00 4.44
2245 2847 4.142249 GCAATAATTAACAGGAGCCCGTTT 60.142 41.667 0.00 0.00 0.00 3.60
2246 2848 5.066764 GCAATAATTAACAGGAGCCCGTTTA 59.933 40.000 0.00 0.00 0.00 2.01
2247 2849 6.725246 CAATAATTAACAGGAGCCCGTTTAG 58.275 40.000 0.00 0.00 0.00 1.85
2248 2850 2.773993 TTAACAGGAGCCCGTTTAGG 57.226 50.000 0.00 0.00 40.63 2.69
2257 2859 2.983791 CCGTTTAGGGCGAGGGAA 59.016 61.111 0.00 0.00 35.97 3.97
2258 2860 1.449070 CCGTTTAGGGCGAGGGAAC 60.449 63.158 0.00 0.00 35.97 3.62
2259 2861 1.294138 CGTTTAGGGCGAGGGAACA 59.706 57.895 0.00 0.00 0.00 3.18
2260 2862 0.739813 CGTTTAGGGCGAGGGAACAG 60.740 60.000 0.00 0.00 0.00 3.16
2261 2863 0.392595 GTTTAGGGCGAGGGAACAGG 60.393 60.000 0.00 0.00 0.00 4.00
2262 2864 2.193087 TTTAGGGCGAGGGAACAGGC 62.193 60.000 0.00 0.00 35.59 4.85
2265 2867 4.035102 GGCGAGGGAACAGGCCTT 62.035 66.667 0.00 0.00 44.70 4.35
2266 2868 2.034221 GCGAGGGAACAGGCCTTT 59.966 61.111 0.00 0.20 0.00 3.11
2267 2869 1.603739 GCGAGGGAACAGGCCTTTT 60.604 57.895 0.00 1.66 0.00 2.27
2268 2870 1.179174 GCGAGGGAACAGGCCTTTTT 61.179 55.000 0.00 0.00 0.00 1.94
2269 2871 0.881796 CGAGGGAACAGGCCTTTTTC 59.118 55.000 0.00 9.12 0.00 2.29
2270 2872 1.817740 CGAGGGAACAGGCCTTTTTCA 60.818 52.381 20.73 0.00 0.00 2.69
2271 2873 1.613925 GAGGGAACAGGCCTTTTTCAC 59.386 52.381 20.73 18.42 0.00 3.18
2272 2874 1.217942 AGGGAACAGGCCTTTTTCACT 59.782 47.619 19.29 19.29 0.00 3.41
2273 2875 2.445525 AGGGAACAGGCCTTTTTCACTA 59.554 45.455 22.36 0.00 31.01 2.74
2274 2876 3.076032 AGGGAACAGGCCTTTTTCACTAT 59.924 43.478 22.36 4.81 31.01 2.12
2275 2877 3.832490 GGGAACAGGCCTTTTTCACTATT 59.168 43.478 20.73 0.00 0.00 1.73
2276 2878 4.283467 GGGAACAGGCCTTTTTCACTATTT 59.717 41.667 20.73 0.00 0.00 1.40
2277 2879 5.221641 GGGAACAGGCCTTTTTCACTATTTT 60.222 40.000 20.73 0.00 0.00 1.82
2278 2880 5.696270 GGAACAGGCCTTTTTCACTATTTTG 59.304 40.000 20.73 2.32 0.00 2.44
2279 2881 6.462347 GGAACAGGCCTTTTTCACTATTTTGA 60.462 38.462 20.73 0.00 0.00 2.69
2280 2882 6.670695 ACAGGCCTTTTTCACTATTTTGAT 57.329 33.333 0.00 0.00 0.00 2.57
2281 2883 6.691508 ACAGGCCTTTTTCACTATTTTGATC 58.308 36.000 0.00 0.00 0.00 2.92
2282 2884 6.494835 ACAGGCCTTTTTCACTATTTTGATCT 59.505 34.615 0.00 0.00 0.00 2.75
2302 2904 7.870826 TGATCTTTTCAGAAAACTTTCGCATA 58.129 30.769 4.06 0.00 41.92 3.14
2304 2906 9.180678 GATCTTTTCAGAAAACTTTCGCATAAA 57.819 29.630 4.06 0.00 41.92 1.40
2305 2907 8.918961 TCTTTTCAGAAAACTTTCGCATAAAA 57.081 26.923 4.06 3.13 41.92 1.52
2313 2915 9.406828 AGAAAACTTTCGCATAAAATAAACTCC 57.593 29.630 0.00 0.00 41.92 3.85
2315 2917 8.742554 AAACTTTCGCATAAAATAAACTCCAG 57.257 30.769 0.00 0.00 0.00 3.86
2317 2919 4.893424 TCGCATAAAATAAACTCCAGGC 57.107 40.909 0.00 0.00 0.00 4.85
2319 2921 4.702612 TCGCATAAAATAAACTCCAGGCAA 59.297 37.500 0.00 0.00 0.00 4.52
2321 2923 5.866633 CGCATAAAATAAACTCCAGGCAAAA 59.133 36.000 0.00 0.00 0.00 2.44
2322 2924 6.183360 CGCATAAAATAAACTCCAGGCAAAAC 60.183 38.462 0.00 0.00 0.00 2.43
2323 2925 6.092122 GCATAAAATAAACTCCAGGCAAAACC 59.908 38.462 0.00 0.00 39.61 3.27
2324 2926 5.622346 AAAATAAACTCCAGGCAAAACCA 57.378 34.783 0.00 0.00 43.14 3.67
2325 2927 5.823861 AAATAAACTCCAGGCAAAACCAT 57.176 34.783 0.00 0.00 43.14 3.55
2326 2928 5.823861 AATAAACTCCAGGCAAAACCATT 57.176 34.783 0.00 0.00 43.14 3.16
2327 2929 5.823861 ATAAACTCCAGGCAAAACCATTT 57.176 34.783 0.00 0.00 43.14 2.32
2328 2930 3.751479 AACTCCAGGCAAAACCATTTC 57.249 42.857 0.00 0.00 43.14 2.17
2329 2931 2.676748 ACTCCAGGCAAAACCATTTCA 58.323 42.857 0.00 0.00 43.14 2.69
2330 2932 2.365293 ACTCCAGGCAAAACCATTTCAC 59.635 45.455 0.00 0.00 43.14 3.18
2331 2933 1.339610 TCCAGGCAAAACCATTTCACG 59.660 47.619 0.00 0.00 43.14 4.35
2332 2934 1.339610 CCAGGCAAAACCATTTCACGA 59.660 47.619 0.00 0.00 43.14 4.35
2333 2935 2.029110 CCAGGCAAAACCATTTCACGAT 60.029 45.455 0.00 0.00 43.14 3.73
2334 2936 3.244976 CAGGCAAAACCATTTCACGATC 58.755 45.455 0.00 0.00 43.14 3.69
2336 2938 3.057315 AGGCAAAACCATTTCACGATCTG 60.057 43.478 0.00 0.00 43.14 2.90
2338 2940 3.914364 GCAAAACCATTTCACGATCTGAC 59.086 43.478 0.00 0.00 0.00 3.51
2340 2942 2.403252 ACCATTTCACGATCTGACCC 57.597 50.000 0.00 0.00 0.00 4.46
2342 2944 2.305927 ACCATTTCACGATCTGACCCTT 59.694 45.455 0.00 0.00 0.00 3.95
2343 2945 3.244911 ACCATTTCACGATCTGACCCTTT 60.245 43.478 0.00 0.00 0.00 3.11
2344 2946 3.758554 CCATTTCACGATCTGACCCTTTT 59.241 43.478 0.00 0.00 0.00 2.27
2345 2947 4.379813 CCATTTCACGATCTGACCCTTTTG 60.380 45.833 0.00 0.00 0.00 2.44
2346 2948 2.472695 TCACGATCTGACCCTTTTGG 57.527 50.000 0.00 0.00 41.37 3.28
2371 5429 4.250305 ACAGGCCGTGGCGTTTCT 62.250 61.111 2.82 0.00 43.06 2.52
2376 5434 1.668151 GCCGTGGCGTTTCTTCTCT 60.668 57.895 0.00 0.00 0.00 3.10
2381 5439 4.178540 CCGTGGCGTTTCTTCTCTATTTA 58.821 43.478 0.00 0.00 0.00 1.40
2382 5440 4.267928 CCGTGGCGTTTCTTCTCTATTTAG 59.732 45.833 0.00 0.00 0.00 1.85
2383 5441 5.100259 CGTGGCGTTTCTTCTCTATTTAGA 58.900 41.667 0.00 0.00 0.00 2.10
2384 5442 5.575606 CGTGGCGTTTCTTCTCTATTTAGAA 59.424 40.000 0.00 0.00 34.39 2.10
2385 5443 6.090358 CGTGGCGTTTCTTCTCTATTTAGAAA 59.910 38.462 0.00 0.00 35.14 2.52
2387 5445 7.905493 GTGGCGTTTCTTCTCTATTTAGAAATG 59.095 37.037 0.00 0.00 43.11 2.32
2392 5450 8.331742 GTTTCTTCTCTATTTAGAAATGCCGAG 58.668 37.037 0.00 2.34 39.34 4.63
2393 5451 5.986135 TCTTCTCTATTTAGAAATGCCGAGC 59.014 40.000 0.00 0.00 35.14 5.03
2395 5453 6.650427 TCTCTATTTAGAAATGCCGAGCTA 57.350 37.500 0.00 0.00 0.00 3.32
2396 5454 6.682746 TCTCTATTTAGAAATGCCGAGCTAG 58.317 40.000 0.00 0.00 0.00 3.42
2399 5457 4.665833 TTTAGAAATGCCGAGCTAGCTA 57.334 40.909 19.38 1.43 0.00 3.32
2410 5468 3.050703 GCTAGCTAGCGTTGCTTCA 57.949 52.632 28.89 0.00 40.44 3.02
2414 6721 1.433534 AGCTAGCGTTGCTTCACTTC 58.566 50.000 9.55 0.00 40.44 3.01
2420 6727 5.447818 GCTAGCGTTGCTTCACTTCATAAAT 60.448 40.000 0.00 0.00 40.44 1.40
2421 6728 6.238103 GCTAGCGTTGCTTCACTTCATAAATA 60.238 38.462 0.00 0.00 40.44 1.40
2424 6731 7.538575 AGCGTTGCTTCACTTCATAAATAAAT 58.461 30.769 0.00 0.00 33.89 1.40
2425 6732 7.485913 AGCGTTGCTTCACTTCATAAATAAATG 59.514 33.333 0.00 0.00 33.89 2.32
2426 6733 7.253750 GCGTTGCTTCACTTCATAAATAAATGG 60.254 37.037 0.00 0.00 0.00 3.16
2428 6735 7.167924 TGCTTCACTTCATAAATAAATGGCA 57.832 32.000 0.00 0.00 0.00 4.92
2431 6738 9.748708 GCTTCACTTCATAAATAAATGGCAATA 57.251 29.630 0.00 0.00 0.00 1.90
2443 6750 5.779529 AAATGGCAATATGGACAAGCTAG 57.220 39.130 0.00 0.00 0.00 3.42
2450 6757 6.017852 GGCAATATGGACAAGCTAGTAGAAAC 60.018 42.308 0.00 0.00 0.00 2.78
2451 6758 6.292381 GCAATATGGACAAGCTAGTAGAAACG 60.292 42.308 0.00 0.00 0.00 3.60
2452 6759 2.955614 TGGACAAGCTAGTAGAAACGC 58.044 47.619 0.00 0.00 0.00 4.84
2453 6760 2.269172 GGACAAGCTAGTAGAAACGCC 58.731 52.381 0.00 0.00 0.00 5.68
2454 6761 2.353406 GGACAAGCTAGTAGAAACGCCA 60.353 50.000 0.00 0.00 0.00 5.69
2455 6762 3.323243 GACAAGCTAGTAGAAACGCCAA 58.677 45.455 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.805044 GGACTAACCTACTAACCGGAGGC 61.805 56.522 9.46 0.00 44.44 4.70
30 31 2.954989 GGACTAACCTACTAACCGGAGG 59.045 54.545 9.46 6.51 45.59 4.30
31 32 2.954989 GGGACTAACCTACTAACCGGAG 59.045 54.545 9.46 0.00 38.98 4.63
32 33 2.311542 TGGGACTAACCTACTAACCGGA 59.688 50.000 9.46 0.00 38.98 5.14
33 34 2.738743 TGGGACTAACCTACTAACCGG 58.261 52.381 0.00 0.00 38.98 5.28
34 35 4.806640 TTTGGGACTAACCTACTAACCG 57.193 45.455 0.00 0.00 38.98 4.44
35 36 7.170277 TCATTTTTGGGACTAACCTACTAACC 58.830 38.462 0.00 0.00 38.98 2.85
36 37 8.803397 ATCATTTTTGGGACTAACCTACTAAC 57.197 34.615 0.00 0.00 38.98 2.34
58 59 9.742144 TGGGCTTTACTTTACACTTTTATATCA 57.258 29.630 0.00 0.00 0.00 2.15
64 65 8.697292 TGTTTATGGGCTTTACTTTACACTTTT 58.303 29.630 0.00 0.00 0.00 2.27
65 66 8.240267 TGTTTATGGGCTTTACTTTACACTTT 57.760 30.769 0.00 0.00 0.00 2.66
66 67 7.826918 TGTTTATGGGCTTTACTTTACACTT 57.173 32.000 0.00 0.00 0.00 3.16
67 68 7.122204 GGATGTTTATGGGCTTTACTTTACACT 59.878 37.037 0.00 0.00 0.00 3.55
68 69 7.094118 TGGATGTTTATGGGCTTTACTTTACAC 60.094 37.037 0.00 0.00 0.00 2.90
69 70 6.948886 TGGATGTTTATGGGCTTTACTTTACA 59.051 34.615 0.00 0.00 0.00 2.41
70 71 7.399245 TGGATGTTTATGGGCTTTACTTTAC 57.601 36.000 0.00 0.00 0.00 2.01
71 72 8.423906 TTTGGATGTTTATGGGCTTTACTTTA 57.576 30.769 0.00 0.00 0.00 1.85
72 73 6.926630 TTGGATGTTTATGGGCTTTACTTT 57.073 33.333 0.00 0.00 0.00 2.66
73 74 6.926630 TTTGGATGTTTATGGGCTTTACTT 57.073 33.333 0.00 0.00 0.00 2.24
74 75 6.571537 CGTTTTGGATGTTTATGGGCTTTACT 60.572 38.462 0.00 0.00 0.00 2.24
75 76 5.575218 CGTTTTGGATGTTTATGGGCTTTAC 59.425 40.000 0.00 0.00 0.00 2.01
76 77 5.336849 CCGTTTTGGATGTTTATGGGCTTTA 60.337 40.000 0.00 0.00 42.00 1.85
77 78 4.562552 CCGTTTTGGATGTTTATGGGCTTT 60.563 41.667 0.00 0.00 42.00 3.51
78 79 3.056179 CCGTTTTGGATGTTTATGGGCTT 60.056 43.478 0.00 0.00 42.00 4.35
79 80 2.495669 CCGTTTTGGATGTTTATGGGCT 59.504 45.455 0.00 0.00 42.00 5.19
80 81 2.418060 CCCGTTTTGGATGTTTATGGGC 60.418 50.000 0.00 0.00 42.00 5.36
81 82 2.829120 ACCCGTTTTGGATGTTTATGGG 59.171 45.455 0.00 0.00 42.00 4.00
82 83 5.646577 TTACCCGTTTTGGATGTTTATGG 57.353 39.130 0.00 0.00 42.00 2.74
87 88 8.789762 GCTATTATATTACCCGTTTTGGATGTT 58.210 33.333 0.00 0.00 42.00 2.71
88 89 7.940137 TGCTATTATATTACCCGTTTTGGATGT 59.060 33.333 0.00 0.00 42.00 3.06
89 90 8.330466 TGCTATTATATTACCCGTTTTGGATG 57.670 34.615 0.00 0.00 42.00 3.51
90 91 8.956426 CATGCTATTATATTACCCGTTTTGGAT 58.044 33.333 0.00 0.00 42.00 3.41
91 92 8.158132 TCATGCTATTATATTACCCGTTTTGGA 58.842 33.333 0.00 0.00 42.00 3.53
92 93 8.330466 TCATGCTATTATATTACCCGTTTTGG 57.670 34.615 0.00 0.00 37.55 3.28
95 96 9.344772 TGTTTCATGCTATTATATTACCCGTTT 57.655 29.630 0.00 0.00 0.00 3.60
96 97 8.911918 TGTTTCATGCTATTATATTACCCGTT 57.088 30.769 0.00 0.00 0.00 4.44
97 98 8.911918 TTGTTTCATGCTATTATATTACCCGT 57.088 30.769 0.00 0.00 0.00 5.28
126 127 8.166422 ACATCTCCAACGTTTCTAGAATTTTT 57.834 30.769 5.89 0.00 0.00 1.94
127 128 7.745620 ACATCTCCAACGTTTCTAGAATTTT 57.254 32.000 5.89 0.00 0.00 1.82
128 129 9.099454 GATACATCTCCAACGTTTCTAGAATTT 57.901 33.333 5.89 0.00 0.00 1.82
129 130 8.258007 TGATACATCTCCAACGTTTCTAGAATT 58.742 33.333 5.89 0.00 0.00 2.17
130 131 7.782049 TGATACATCTCCAACGTTTCTAGAAT 58.218 34.615 5.89 0.00 0.00 2.40
131 132 7.093902 ACTGATACATCTCCAACGTTTCTAGAA 60.094 37.037 0.00 0.00 0.00 2.10
132 133 6.377429 ACTGATACATCTCCAACGTTTCTAGA 59.623 38.462 0.00 2.01 0.00 2.43
133 134 6.565234 ACTGATACATCTCCAACGTTTCTAG 58.435 40.000 0.00 0.00 0.00 2.43
134 135 6.525578 ACTGATACATCTCCAACGTTTCTA 57.474 37.500 0.00 0.00 0.00 2.10
135 136 5.407407 ACTGATACATCTCCAACGTTTCT 57.593 39.130 0.00 0.00 0.00 2.52
136 137 5.749109 CCTACTGATACATCTCCAACGTTTC 59.251 44.000 0.00 0.00 0.00 2.78
137 138 5.187186 ACCTACTGATACATCTCCAACGTTT 59.813 40.000 0.00 0.00 0.00 3.60
138 139 4.710375 ACCTACTGATACATCTCCAACGTT 59.290 41.667 0.00 0.00 0.00 3.99
139 140 4.279145 ACCTACTGATACATCTCCAACGT 58.721 43.478 0.00 0.00 0.00 3.99
140 141 4.338400 TGACCTACTGATACATCTCCAACG 59.662 45.833 0.00 0.00 0.00 4.10
141 142 5.854010 TGACCTACTGATACATCTCCAAC 57.146 43.478 0.00 0.00 0.00 3.77
142 143 6.042093 GGAATGACCTACTGATACATCTCCAA 59.958 42.308 0.00 0.00 35.41 3.53
143 144 5.540337 GGAATGACCTACTGATACATCTCCA 59.460 44.000 0.00 0.00 35.41 3.86
144 145 5.540337 TGGAATGACCTACTGATACATCTCC 59.460 44.000 0.00 0.00 39.86 3.71
145 146 6.266558 ACTGGAATGACCTACTGATACATCTC 59.733 42.308 0.00 0.00 39.86 2.75
146 147 6.139671 ACTGGAATGACCTACTGATACATCT 58.860 40.000 0.00 0.00 39.86 2.90
147 148 6.412362 ACTGGAATGACCTACTGATACATC 57.588 41.667 0.00 0.00 39.86 3.06
148 149 6.814954 AACTGGAATGACCTACTGATACAT 57.185 37.500 0.00 0.00 39.86 2.29
149 150 6.013725 ACAAACTGGAATGACCTACTGATACA 60.014 38.462 0.00 0.00 39.86 2.29
150 151 6.313905 CACAAACTGGAATGACCTACTGATAC 59.686 42.308 0.00 0.00 39.86 2.24
273 282 4.065789 GAGACTTACCAAGAACTTGTGGG 58.934 47.826 12.54 1.72 39.39 4.61
275 284 5.116180 TGTGAGACTTACCAAGAACTTGTG 58.884 41.667 12.54 7.40 38.85 3.33
439 449 8.940397 AGGGAGTTTAAATGAATTTCAGAAGA 57.060 30.769 5.21 0.00 0.00 2.87
540 555 7.947890 AGTCCCTAATATTGACTTTTCAACCAA 59.052 33.333 0.00 0.00 44.66 3.67
942 967 8.462016 CCGAAGATCAGAAGAACCAAAAATAAT 58.538 33.333 0.00 0.00 0.00 1.28
943 968 7.447238 ACCGAAGATCAGAAGAACCAAAAATAA 59.553 33.333 0.00 0.00 0.00 1.40
944 969 6.940298 ACCGAAGATCAGAAGAACCAAAAATA 59.060 34.615 0.00 0.00 0.00 1.40
945 970 5.770162 ACCGAAGATCAGAAGAACCAAAAAT 59.230 36.000 0.00 0.00 0.00 1.82
946 971 5.130350 ACCGAAGATCAGAAGAACCAAAAA 58.870 37.500 0.00 0.00 0.00 1.94
947 972 4.714632 ACCGAAGATCAGAAGAACCAAAA 58.285 39.130 0.00 0.00 0.00 2.44
1267 1292 1.273048 ACGTTGTGCATACTCGGGTTA 59.727 47.619 0.00 0.00 32.47 2.85
1462 1487 3.191162 ACAAAGACACACATATGCGCAAT 59.809 39.130 17.11 6.72 0.00 3.56
1464 1489 2.150390 ACAAAGACACACATATGCGCA 58.850 42.857 14.96 14.96 0.00 6.09
1547 1577 9.710900 CATACACTGCACTAGGATCATTTTATA 57.289 33.333 0.00 0.00 0.00 0.98
1654 1686 5.010516 TCAAAGTATGGTTGGTTGAATGGTG 59.989 40.000 0.00 0.00 0.00 4.17
1743 1775 4.274950 TGCTTTGTACTTTTGGTGAGCTAC 59.725 41.667 0.00 0.00 0.00 3.58
1747 1779 4.321230 GGGATGCTTTGTACTTTTGGTGAG 60.321 45.833 0.00 0.00 0.00 3.51
1782 1814 7.172868 TGGTCCAAGAACGTCTATGTAATTA 57.827 36.000 0.00 0.00 0.00 1.40
1811 1843 1.145803 GTTCTGACGGTAGTGGTTGC 58.854 55.000 0.00 0.00 0.00 4.17
1813 1845 3.879912 CGTTCTGACGGTAGTGGTT 57.120 52.632 0.00 0.00 45.32 3.67
1824 1856 2.258591 GTGAGCGGCTCGTTCTGA 59.741 61.111 23.72 3.41 37.92 3.27
1867 1899 6.320164 AGACTTCTCAGCTATAATCGACAAGT 59.680 38.462 0.00 0.00 0.00 3.16
1922 1954 0.535328 CTCGATGACTAGGGCTCCGA 60.535 60.000 0.00 0.00 0.00 4.55
1945 1978 7.827236 TGGATTGACGGATCTAGTTTGTTAAAT 59.173 33.333 0.00 0.00 0.00 1.40
1963 1996 3.617263 GTCGACCATGTTACTGGATTGAC 59.383 47.826 3.51 7.83 39.73 3.18
1978 2011 3.905968 TCCTATATGTGAAGGTCGACCA 58.094 45.455 35.00 15.76 38.89 4.02
2016 2049 2.028020 GCCTACCCTCAATCCGATAAGG 60.028 54.545 3.63 3.63 42.97 2.69
2020 2053 1.807814 AAGCCTACCCTCAATCCGAT 58.192 50.000 0.00 0.00 0.00 4.18
2078 2117 1.123077 GGGAGCCAAATGGGATTTCC 58.877 55.000 0.90 0.00 40.01 3.13
2079 2118 0.746659 CGGGAGCCAAATGGGATTTC 59.253 55.000 0.90 0.00 40.01 2.17
2080 2119 0.334676 TCGGGAGCCAAATGGGATTT 59.665 50.000 0.90 0.00 40.01 2.17
2083 2122 1.001393 GTTCGGGAGCCAAATGGGA 60.001 57.895 0.90 0.00 40.01 4.37
2084 2123 1.304052 TGTTCGGGAGCCAAATGGG 60.304 57.895 0.90 0.00 40.85 4.00
2085 2124 0.893270 TGTGTTCGGGAGCCAAATGG 60.893 55.000 0.00 0.00 38.53 3.16
2086 2125 1.133025 GATGTGTTCGGGAGCCAAATG 59.867 52.381 0.00 0.00 0.00 2.32
2087 2126 1.004745 AGATGTGTTCGGGAGCCAAAT 59.995 47.619 0.00 0.00 0.00 2.32
2088 2127 0.400213 AGATGTGTTCGGGAGCCAAA 59.600 50.000 0.00 0.00 0.00 3.28
2091 2130 2.484889 GATTAGATGTGTTCGGGAGCC 58.515 52.381 0.00 0.00 0.00 4.70
2092 2131 2.484889 GGATTAGATGTGTTCGGGAGC 58.515 52.381 0.00 0.00 0.00 4.70
2093 2132 2.545952 CGGGATTAGATGTGTTCGGGAG 60.546 54.545 0.00 0.00 0.00 4.30
2095 2134 1.411246 TCGGGATTAGATGTGTTCGGG 59.589 52.381 0.00 0.00 0.00 5.14
2098 2700 7.489757 GCTTAGATATCGGGATTAGATGTGTTC 59.510 40.741 0.00 0.00 0.00 3.18
2102 2704 5.067936 CGGCTTAGATATCGGGATTAGATGT 59.932 44.000 0.00 0.00 0.00 3.06
2103 2705 5.299531 TCGGCTTAGATATCGGGATTAGATG 59.700 44.000 0.00 0.00 0.00 2.90
2105 2707 4.851843 TCGGCTTAGATATCGGGATTAGA 58.148 43.478 0.00 0.00 0.00 2.10
2107 2709 5.198207 TGATCGGCTTAGATATCGGGATTA 58.802 41.667 0.00 0.00 0.00 1.75
2110 2712 3.081710 TGATCGGCTTAGATATCGGGA 57.918 47.619 0.00 0.00 0.00 5.14
2114 2716 7.623089 GCAAGAACATTGATCGGCTTAGATATC 60.623 40.741 0.00 0.00 0.00 1.63
2119 2721 3.544834 CGCAAGAACATTGATCGGCTTAG 60.545 47.826 10.26 0.00 43.02 2.18
2123 2725 3.224955 CGCAAGAACATTGATCGGC 57.775 52.632 0.00 0.00 43.02 5.54
2141 2743 4.606457 AATACAACAAGCAGCGAGAATC 57.394 40.909 0.00 0.00 0.00 2.52
2142 2744 4.572389 CCTAATACAACAAGCAGCGAGAAT 59.428 41.667 0.00 0.00 0.00 2.40
2143 2745 3.932710 CCTAATACAACAAGCAGCGAGAA 59.067 43.478 0.00 0.00 0.00 2.87
2144 2746 3.521560 CCTAATACAACAAGCAGCGAGA 58.478 45.455 0.00 0.00 0.00 4.04
2145 2747 2.609459 CCCTAATACAACAAGCAGCGAG 59.391 50.000 0.00 0.00 0.00 5.03
2147 2749 2.351726 GACCCTAATACAACAAGCAGCG 59.648 50.000 0.00 0.00 0.00 5.18
2148 2750 2.683362 GGACCCTAATACAACAAGCAGC 59.317 50.000 0.00 0.00 0.00 5.25
2149 2751 4.222124 AGGACCCTAATACAACAAGCAG 57.778 45.455 0.00 0.00 0.00 4.24
2151 2753 7.338449 TGAAAATAGGACCCTAATACAACAAGC 59.662 37.037 0.00 0.00 31.73 4.01
2152 2754 8.801882 TGAAAATAGGACCCTAATACAACAAG 57.198 34.615 0.00 0.00 31.73 3.16
2153 2755 8.607713 TCTGAAAATAGGACCCTAATACAACAA 58.392 33.333 0.00 0.00 31.73 2.83
2155 2757 7.224167 CGTCTGAAAATAGGACCCTAATACAAC 59.776 40.741 0.00 0.00 31.73 3.32
2156 2758 7.270047 CGTCTGAAAATAGGACCCTAATACAA 58.730 38.462 0.00 0.00 31.73 2.41
2158 2760 6.221659 CCGTCTGAAAATAGGACCCTAATAC 58.778 44.000 0.00 0.00 31.73 1.89
2160 2762 4.102681 CCCGTCTGAAAATAGGACCCTAAT 59.897 45.833 0.00 0.00 31.73 1.73
2162 2764 3.036091 CCCGTCTGAAAATAGGACCCTA 58.964 50.000 0.00 0.00 0.00 3.53
2164 2766 1.134189 CCCCGTCTGAAAATAGGACCC 60.134 57.143 0.00 0.00 0.00 4.46
2165 2767 1.134189 CCCCCGTCTGAAAATAGGACC 60.134 57.143 0.00 0.00 0.00 4.46
2166 2768 1.558294 ACCCCCGTCTGAAAATAGGAC 59.442 52.381 0.00 0.00 0.00 3.85
2167 2769 1.835531 GACCCCCGTCTGAAAATAGGA 59.164 52.381 0.00 0.00 35.99 2.94
2178 2780 0.822811 GTAGAAGGAAGACCCCCGTC 59.177 60.000 0.00 0.00 39.50 4.79
2180 2782 0.824759 CAGTAGAAGGAAGACCCCCG 59.175 60.000 0.00 0.00 36.73 5.73
2181 2783 1.205055 CCAGTAGAAGGAAGACCCCC 58.795 60.000 0.00 0.00 36.73 5.40
2183 2785 1.276622 TGCCAGTAGAAGGAAGACCC 58.723 55.000 0.00 0.00 36.73 4.46
2184 2786 2.237392 ACATGCCAGTAGAAGGAAGACC 59.763 50.000 0.00 0.00 0.00 3.85
2185 2787 3.265791 CACATGCCAGTAGAAGGAAGAC 58.734 50.000 0.00 0.00 0.00 3.01
2186 2788 2.237143 CCACATGCCAGTAGAAGGAAGA 59.763 50.000 0.00 0.00 0.00 2.87
2187 2789 2.636830 CCACATGCCAGTAGAAGGAAG 58.363 52.381 0.00 0.00 0.00 3.46
2189 2791 0.253044 GCCACATGCCAGTAGAAGGA 59.747 55.000 0.00 0.00 0.00 3.36
2190 2792 2.785868 GCCACATGCCAGTAGAAGG 58.214 57.895 0.00 0.00 0.00 3.46
2204 2806 1.377725 CAGGTCAGATGTGGGCCAC 60.378 63.158 29.75 29.75 34.56 5.01
2205 2807 3.080641 CAGGTCAGATGTGGGCCA 58.919 61.111 0.00 0.00 0.00 5.36
2206 2808 2.439156 GCAGGTCAGATGTGGGCC 60.439 66.667 0.00 0.00 0.00 5.80
2207 2809 0.682209 ATTGCAGGTCAGATGTGGGC 60.682 55.000 0.00 0.00 0.00 5.36
2208 2810 2.715749 TATTGCAGGTCAGATGTGGG 57.284 50.000 0.00 0.00 0.00 4.61
2209 2811 6.095300 TGTTAATTATTGCAGGTCAGATGTGG 59.905 38.462 0.00 0.00 0.00 4.17
2210 2812 7.087409 TGTTAATTATTGCAGGTCAGATGTG 57.913 36.000 0.00 0.00 0.00 3.21
2211 2813 6.319658 CCTGTTAATTATTGCAGGTCAGATGT 59.680 38.462 16.63 0.00 42.47 3.06
2212 2814 6.543465 TCCTGTTAATTATTGCAGGTCAGATG 59.457 38.462 20.94 4.12 46.23 2.90
2213 2815 6.662755 TCCTGTTAATTATTGCAGGTCAGAT 58.337 36.000 20.94 0.00 46.23 2.90
2214 2816 6.061022 TCCTGTTAATTATTGCAGGTCAGA 57.939 37.500 20.94 7.41 46.23 3.27
2215 2817 5.220931 GCTCCTGTTAATTATTGCAGGTCAG 60.221 44.000 20.94 15.88 46.23 3.51
2216 2818 4.640201 GCTCCTGTTAATTATTGCAGGTCA 59.360 41.667 20.94 9.34 46.23 4.02
2217 2819 4.036852 GGCTCCTGTTAATTATTGCAGGTC 59.963 45.833 20.94 16.07 46.23 3.85
2218 2820 3.954258 GGCTCCTGTTAATTATTGCAGGT 59.046 43.478 20.94 0.00 46.23 4.00
2220 2822 3.003689 CGGGCTCCTGTTAATTATTGCAG 59.996 47.826 0.00 4.99 0.00 4.41
2221 2823 2.948979 CGGGCTCCTGTTAATTATTGCA 59.051 45.455 0.00 0.00 0.00 4.08
2222 2824 2.949644 ACGGGCTCCTGTTAATTATTGC 59.050 45.455 0.00 0.00 30.14 3.56
2223 2825 5.576447 AAACGGGCTCCTGTTAATTATTG 57.424 39.130 13.07 0.00 43.92 1.90
2224 2826 5.826208 CCTAAACGGGCTCCTGTTAATTATT 59.174 40.000 13.07 0.30 43.92 1.40
2225 2827 5.374071 CCTAAACGGGCTCCTGTTAATTAT 58.626 41.667 13.07 0.96 43.92 1.28
2226 2828 4.773013 CCTAAACGGGCTCCTGTTAATTA 58.227 43.478 13.07 2.66 43.92 1.40
2227 2829 3.617284 CCTAAACGGGCTCCTGTTAATT 58.383 45.455 13.07 1.63 43.92 1.40
2228 2830 3.277142 CCTAAACGGGCTCCTGTTAAT 57.723 47.619 13.07 2.30 43.92 1.40
2229 2831 2.773993 CCTAAACGGGCTCCTGTTAA 57.226 50.000 13.07 0.00 43.92 2.01
2240 2842 1.449070 GTTCCCTCGCCCTAAACGG 60.449 63.158 0.00 0.00 0.00 4.44
2241 2843 0.739813 CTGTTCCCTCGCCCTAAACG 60.740 60.000 0.00 0.00 0.00 3.60
2242 2844 0.392595 CCTGTTCCCTCGCCCTAAAC 60.393 60.000 0.00 0.00 0.00 2.01
2243 2845 1.988015 CCTGTTCCCTCGCCCTAAA 59.012 57.895 0.00 0.00 0.00 1.85
2244 2846 2.666098 GCCTGTTCCCTCGCCCTAA 61.666 63.158 0.00 0.00 0.00 2.69
2245 2847 3.081409 GCCTGTTCCCTCGCCCTA 61.081 66.667 0.00 0.00 0.00 3.53
2248 2850 3.569200 AAAGGCCTGTTCCCTCGCC 62.569 63.158 5.69 0.00 41.96 5.54
2249 2851 1.179174 AAAAAGGCCTGTTCCCTCGC 61.179 55.000 9.15 0.00 0.00 5.03
2250 2852 0.881796 GAAAAAGGCCTGTTCCCTCG 59.118 55.000 9.15 0.00 0.00 4.63
2251 2853 1.613925 GTGAAAAAGGCCTGTTCCCTC 59.386 52.381 21.20 11.72 0.00 4.30
2252 2854 1.217942 AGTGAAAAAGGCCTGTTCCCT 59.782 47.619 21.20 15.00 0.00 4.20
2253 2855 1.704641 AGTGAAAAAGGCCTGTTCCC 58.295 50.000 21.20 13.30 0.00 3.97
2254 2856 5.468540 AAATAGTGAAAAAGGCCTGTTCC 57.531 39.130 21.20 5.97 0.00 3.62
2255 2857 6.512297 TCAAAATAGTGAAAAAGGCCTGTTC 58.488 36.000 9.15 15.01 0.00 3.18
2256 2858 6.478512 TCAAAATAGTGAAAAAGGCCTGTT 57.521 33.333 5.69 3.08 0.00 3.16
2257 2859 6.494835 AGATCAAAATAGTGAAAAAGGCCTGT 59.505 34.615 5.69 0.00 0.00 4.00
2258 2860 6.928520 AGATCAAAATAGTGAAAAAGGCCTG 58.071 36.000 5.69 0.00 0.00 4.85
2259 2861 7.544804 AAGATCAAAATAGTGAAAAAGGCCT 57.455 32.000 0.00 0.00 0.00 5.19
2260 2862 8.607441 AAAAGATCAAAATAGTGAAAAAGGCC 57.393 30.769 0.00 0.00 0.00 5.19
2261 2863 9.260002 TGAAAAGATCAAAATAGTGAAAAAGGC 57.740 29.630 0.00 0.00 34.30 4.35
2273 2875 8.542953 GCGAAAGTTTTCTGAAAAGATCAAAAT 58.457 29.630 15.39 0.00 37.67 1.82
2274 2876 7.543868 TGCGAAAGTTTTCTGAAAAGATCAAAA 59.456 29.630 15.39 0.00 37.67 2.44
2275 2877 7.032580 TGCGAAAGTTTTCTGAAAAGATCAAA 58.967 30.769 15.39 3.85 37.67 2.69
2276 2878 6.559810 TGCGAAAGTTTTCTGAAAAGATCAA 58.440 32.000 15.39 4.13 37.67 2.57
2277 2879 6.130298 TGCGAAAGTTTTCTGAAAAGATCA 57.870 33.333 15.39 6.09 35.07 2.92
2278 2880 8.728088 TTATGCGAAAGTTTTCTGAAAAGATC 57.272 30.769 15.39 12.30 35.07 2.75
2279 2881 9.528018 TTTTATGCGAAAGTTTTCTGAAAAGAT 57.472 25.926 15.39 5.41 35.07 2.40
2280 2882 8.918961 TTTTATGCGAAAGTTTTCTGAAAAGA 57.081 26.923 15.39 0.00 35.07 2.52
2288 2890 9.187455 TGGAGTTTATTTTATGCGAAAGTTTTC 57.813 29.630 0.00 0.00 0.00 2.29
2289 2891 9.191995 CTGGAGTTTATTTTATGCGAAAGTTTT 57.808 29.630 0.00 0.00 0.00 2.43
2292 2894 6.625081 GCCTGGAGTTTATTTTATGCGAAAGT 60.625 38.462 0.00 0.00 0.00 2.66
2294 2896 5.184096 TGCCTGGAGTTTATTTTATGCGAAA 59.816 36.000 0.00 0.00 0.00 3.46
2297 2899 4.630894 TGCCTGGAGTTTATTTTATGCG 57.369 40.909 0.00 0.00 0.00 4.73
2302 2904 5.622346 TGGTTTTGCCTGGAGTTTATTTT 57.378 34.783 0.00 0.00 38.35 1.82
2304 2906 5.823861 AATGGTTTTGCCTGGAGTTTATT 57.176 34.783 0.00 0.00 38.35 1.40
2305 2907 5.306678 TGAAATGGTTTTGCCTGGAGTTTAT 59.693 36.000 0.00 0.00 38.35 1.40
2310 2912 2.607771 CGTGAAATGGTTTTGCCTGGAG 60.608 50.000 0.00 0.00 38.35 3.86
2313 2915 2.791383 TCGTGAAATGGTTTTGCCTG 57.209 45.000 0.00 0.00 38.35 4.85
2315 2917 3.057596 TCAGATCGTGAAATGGTTTTGCC 60.058 43.478 0.00 0.00 32.25 4.52
2317 2919 4.475944 GGTCAGATCGTGAAATGGTTTTG 58.524 43.478 0.00 0.00 36.74 2.44
2319 2921 3.081804 GGGTCAGATCGTGAAATGGTTT 58.918 45.455 0.00 0.00 36.74 3.27
2321 2923 1.909302 AGGGTCAGATCGTGAAATGGT 59.091 47.619 0.00 0.00 36.74 3.55
2322 2924 2.698855 AGGGTCAGATCGTGAAATGG 57.301 50.000 0.00 0.00 36.74 3.16
2323 2925 4.379813 CCAAAAGGGTCAGATCGTGAAATG 60.380 45.833 0.00 0.00 36.74 2.32
2324 2926 3.758554 CCAAAAGGGTCAGATCGTGAAAT 59.241 43.478 0.00 0.00 36.74 2.17
2325 2927 3.146066 CCAAAAGGGTCAGATCGTGAAA 58.854 45.455 0.00 0.00 36.74 2.69
2326 2928 2.778299 CCAAAAGGGTCAGATCGTGAA 58.222 47.619 0.00 0.00 36.74 3.18
2327 2929 2.472695 CCAAAAGGGTCAGATCGTGA 57.527 50.000 0.00 0.00 0.00 4.35
2354 2956 3.767630 AAGAAACGCCACGGCCTGT 62.768 57.895 0.00 0.00 37.98 4.00
2356 2958 2.668550 GAAGAAACGCCACGGCCT 60.669 61.111 0.00 0.00 37.98 5.19
2357 2959 2.668550 AGAAGAAACGCCACGGCC 60.669 61.111 1.63 0.00 37.98 6.13
2358 2960 0.389426 TAGAGAAGAAACGCCACGGC 60.389 55.000 0.00 0.00 37.85 5.68
2359 2961 2.295253 ATAGAGAAGAAACGCCACGG 57.705 50.000 0.00 0.00 0.00 4.94
2361 2963 6.963049 TTCTAAATAGAGAAGAAACGCCAC 57.037 37.500 0.00 0.00 33.21 5.01
2362 2964 7.414098 GCATTTCTAAATAGAGAAGAAACGCCA 60.414 37.037 4.30 0.00 40.61 5.69
2363 2965 6.907748 GCATTTCTAAATAGAGAAGAAACGCC 59.092 38.462 4.30 0.00 40.61 5.68
2364 2966 6.907748 GGCATTTCTAAATAGAGAAGAAACGC 59.092 38.462 6.56 6.56 43.80 4.84
2365 2967 7.010183 TCGGCATTTCTAAATAGAGAAGAAACG 59.990 37.037 0.00 0.00 40.85 3.60
2366 2968 8.197988 TCGGCATTTCTAAATAGAGAAGAAAC 57.802 34.615 0.00 0.00 40.85 2.78
2371 5429 5.918608 AGCTCGGCATTTCTAAATAGAGAA 58.081 37.500 13.94 0.00 33.21 2.87
2376 5434 5.215252 AGCTAGCTCGGCATTTCTAAATA 57.785 39.130 12.68 0.00 0.00 1.40
2381 5439 1.270041 GCTAGCTAGCTCGGCATTTCT 60.270 52.381 33.71 4.72 45.62 2.52
2382 5440 1.144136 GCTAGCTAGCTCGGCATTTC 58.856 55.000 33.71 5.30 45.62 2.17
2383 5441 0.598680 CGCTAGCTAGCTCGGCATTT 60.599 55.000 36.02 8.36 46.85 2.32
2384 5442 1.006805 CGCTAGCTAGCTCGGCATT 60.007 57.895 36.02 8.99 46.85 3.56
2385 5443 1.739338 AACGCTAGCTAGCTCGGCAT 61.739 55.000 36.02 19.39 46.85 4.40
2387 5445 1.946650 CAACGCTAGCTAGCTCGGC 60.947 63.158 36.02 23.85 46.85 5.54
2392 5450 0.647925 GTGAAGCAACGCTAGCTAGC 59.352 55.000 31.88 31.88 42.53 3.42
2393 5451 2.285827 AGTGAAGCAACGCTAGCTAG 57.714 50.000 16.84 16.84 42.53 3.42
2395 5453 1.270305 TGAAGTGAAGCAACGCTAGCT 60.270 47.619 13.93 0.00 45.97 3.32
2396 5454 1.148310 TGAAGTGAAGCAACGCTAGC 58.852 50.000 4.06 4.06 38.25 3.42
2399 5457 6.494893 TTATTTATGAAGTGAAGCAACGCT 57.505 33.333 0.00 0.00 42.56 5.07
2401 5459 7.253750 GCCATTTATTTATGAAGTGAAGCAACG 60.254 37.037 0.00 0.00 0.00 4.10
2405 5463 8.652810 ATTGCCATTTATTTATGAAGTGAAGC 57.347 30.769 0.00 0.00 0.00 3.86
2414 6721 8.928733 GCTTGTCCATATTGCCATTTATTTATG 58.071 33.333 0.00 0.00 0.00 1.90
2420 6727 6.364701 ACTAGCTTGTCCATATTGCCATTTA 58.635 36.000 0.00 0.00 0.00 1.40
2421 6728 5.203528 ACTAGCTTGTCCATATTGCCATTT 58.796 37.500 0.00 0.00 0.00 2.32
2424 6731 3.931907 ACTAGCTTGTCCATATTGCCA 57.068 42.857 0.00 0.00 0.00 4.92
2425 6732 5.215252 TCTACTAGCTTGTCCATATTGCC 57.785 43.478 3.45 0.00 0.00 4.52
2426 6733 6.292381 CGTTTCTACTAGCTTGTCCATATTGC 60.292 42.308 3.45 0.00 0.00 3.56
2428 6735 5.753921 GCGTTTCTACTAGCTTGTCCATATT 59.246 40.000 3.45 0.00 0.00 1.28
2431 6738 3.522553 GCGTTTCTACTAGCTTGTCCAT 58.477 45.455 3.45 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.