Multiple sequence alignment - TraesCS5B01G473300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G473300 chr5B 100.000 2457 0 0 1 2457 647405768 647403312 0.000000e+00 4538.0
1 TraesCS5B01G473300 chr5B 94.656 1815 90 4 149 1963 647464822 647463015 0.000000e+00 2808.0
2 TraesCS5B01G473300 chr5B 90.715 1971 153 14 1 1963 647699036 647697088 0.000000e+00 2599.0
3 TraesCS5B01G473300 chr5B 87.500 440 50 4 1959 2397 112269258 112269693 1.010000e-138 503.0
4 TraesCS5B01G473300 chr5B 93.651 63 4 0 2395 2457 647697091 647697029 7.230000e-16 95.3
5 TraesCS5B01G473300 chr5B 93.651 63 4 0 2395 2457 647779471 647779409 7.230000e-16 95.3
6 TraesCS5B01G473300 chr5B 93.443 61 4 0 2395 2455 647463018 647462958 9.360000e-15 91.6
7 TraesCS5B01G473300 chr5D 92.218 1966 138 8 1 1963 514996661 514994708 0.000000e+00 2769.0
8 TraesCS5B01G473300 chr5D 92.167 1966 141 6 1 1963 515026018 515024063 0.000000e+00 2765.0
9 TraesCS5B01G473300 chr5D 91.417 1969 150 10 1 1963 514948816 514946861 0.000000e+00 2682.0
10 TraesCS5B01G473300 chr5D 91.404 1966 150 9 1 1963 514975224 514973275 0.000000e+00 2676.0
11 TraesCS5B01G473300 chr5D 90.567 1675 135 10 1 1670 514967492 514965836 0.000000e+00 2196.0
12 TraesCS5B01G473300 chr5D 96.825 63 2 0 2395 2457 514973278 514973216 3.340000e-19 106.0
13 TraesCS5B01G473300 chr5D 93.651 63 4 0 2395 2457 514946864 514946802 7.230000e-16 95.3
14 TraesCS5B01G473300 chr5D 92.063 63 5 0 2395 2457 514964804 514964742 3.370000e-14 89.8
15 TraesCS5B01G473300 chr5D 90.476 63 6 0 2395 2457 514994711 514994649 1.570000e-12 84.2
16 TraesCS5B01G473300 chr5A 88.608 1817 181 15 158 1963 643029622 643027821 0.000000e+00 2185.0
17 TraesCS5B01G473300 chr5A 87.837 1817 193 20 158 1963 643042713 643040914 0.000000e+00 2106.0
18 TraesCS5B01G473300 chr5A 88.671 1730 164 20 244 1963 643034526 643032819 0.000000e+00 2080.0
19 TraesCS5B01G473300 chr5A 86.977 430 52 3 1964 2393 13076686 13076261 4.750000e-132 481.0
20 TraesCS5B01G473300 chr2B 87.982 441 48 4 1961 2398 51144828 51145266 1.300000e-142 516.0
21 TraesCS5B01G473300 chr6A 84.988 433 65 0 1958 2390 3555864 3556296 8.060000e-120 440.0
22 TraesCS5B01G473300 chr7D 84.211 437 68 1 1961 2397 459784223 459784658 8.120000e-115 424.0
23 TraesCS5B01G473300 chr4D 94.040 151 9 0 1 151 17439078 17438928 1.900000e-56 230.0
24 TraesCS5B01G473300 chr4D 92.857 154 11 0 1 154 69546821 69546668 8.840000e-55 224.0
25 TraesCS5B01G473300 chr3A 92.810 153 11 0 1 153 95011985 95011833 3.180000e-54 222.0
26 TraesCS5B01G473300 chr4A 85.567 194 28 0 1965 2158 132987944 132988137 1.150000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G473300 chr5B 647403312 647405768 2456 True 4538.00 4538 100.0000 1 2457 1 chr5B.!!$R1 2456
1 TraesCS5B01G473300 chr5B 647462958 647464822 1864 True 1449.80 2808 94.0495 149 2455 2 chr5B.!!$R3 2306
2 TraesCS5B01G473300 chr5B 647697029 647699036 2007 True 1347.15 2599 92.1830 1 2457 2 chr5B.!!$R4 2456
3 TraesCS5B01G473300 chr5D 515024063 515026018 1955 True 2765.00 2765 92.1670 1 1963 1 chr5D.!!$R1 1962
4 TraesCS5B01G473300 chr5D 514994649 514996661 2012 True 1426.60 2769 91.3470 1 2457 2 chr5D.!!$R5 2456
5 TraesCS5B01G473300 chr5D 514973216 514975224 2008 True 1391.00 2676 94.1145 1 2457 2 chr5D.!!$R4 2456
6 TraesCS5B01G473300 chr5D 514946802 514948816 2014 True 1388.65 2682 92.5340 1 2457 2 chr5D.!!$R2 2456
7 TraesCS5B01G473300 chr5D 514964742 514967492 2750 True 1142.90 2196 91.3150 1 2457 2 chr5D.!!$R3 2456
8 TraesCS5B01G473300 chr5A 643027821 643034526 6705 True 2132.50 2185 88.6395 158 1963 2 chr5A.!!$R3 1805
9 TraesCS5B01G473300 chr5A 643040914 643042713 1799 True 2106.00 2106 87.8370 158 1963 1 chr5A.!!$R2 1805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 248 0.88337 GTTTTCGTGGAGGGCGTCTT 60.883 55.0 7.19 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 2767 0.0293 CAGGCACGTTTGTGGTCAAG 59.971 55.0 0.0 0.0 46.51 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 7.689446 TGTGTCGAATCAATAAATTTGGGTA 57.311 32.000 0.00 0.00 0.00 3.69
106 107 9.413048 TGTCGAATCAATAAATTTGGGTAAAAC 57.587 29.630 0.00 0.00 0.00 2.43
145 146 3.905968 TCACGATCCCCTATACTTGTGA 58.094 45.455 0.00 0.00 33.14 3.58
229 230 3.430218 CAGGAGTAGTTGCAGAGTTTTCG 59.570 47.826 0.00 0.00 0.00 3.46
242 248 0.883370 GTTTTCGTGGAGGGCGTCTT 60.883 55.000 7.19 0.00 0.00 3.01
323 333 5.108187 TCCTCTCAATTTGATCCTTCTGG 57.892 43.478 0.00 0.00 0.00 3.86
356 366 5.240844 AGCTTTACTGCTTCGTTAACCAATT 59.759 36.000 0.00 0.00 40.93 2.32
479 493 9.601810 AAACTCCCTTTAAAAATATTCCTGTCT 57.398 29.630 0.00 0.00 0.00 3.41
941 959 4.019681 TGAGGAACCGACCACTATTTCATT 60.020 41.667 0.00 0.00 0.00 2.57
942 960 5.188163 TGAGGAACCGACCACTATTTCATTA 59.812 40.000 0.00 0.00 0.00 1.90
943 961 6.126883 TGAGGAACCGACCACTATTTCATTAT 60.127 38.462 0.00 0.00 0.00 1.28
944 962 6.659824 AGGAACCGACCACTATTTCATTATT 58.340 36.000 0.00 0.00 0.00 1.40
945 963 7.798071 AGGAACCGACCACTATTTCATTATTA 58.202 34.615 0.00 0.00 0.00 0.98
1204 1970 6.566197 AAGATCAAGTGATTGGTTGTTCTC 57.434 37.500 0.00 0.00 33.52 2.87
1215 1981 9.424319 GTGATTGGTTGTTCTCGATGTATATAT 57.576 33.333 0.00 0.00 0.00 0.86
1377 2143 0.615331 AATGACCACATCCAGCTCGT 59.385 50.000 0.00 0.00 35.50 4.18
1410 2176 1.712081 CGTTCTTCATCTGCAGCCG 59.288 57.895 9.47 1.89 0.00 5.52
1489 2256 5.684850 CGCATATGTGTGTCTTTGTGTTTA 58.315 37.500 8.16 0.00 0.00 2.01
1521 2289 3.751175 TGCAAGTCTTTATGGTGTGCTAC 59.249 43.478 0.00 0.00 0.00 3.58
1534 2302 3.812053 GGTGTGCTACCTCATGATGAATC 59.188 47.826 4.88 0.00 46.51 2.52
1688 2458 8.472007 TTCTACCAACCATACTTTGAACATTT 57.528 30.769 0.00 0.00 0.00 2.32
1776 2546 3.573967 ACCAAAAGTACAAAGCATCCCAG 59.426 43.478 0.00 0.00 0.00 4.45
1817 2587 2.876581 AGGTTCTTGGACCATCAAACC 58.123 47.619 18.75 18.75 42.35 3.27
1844 2614 2.507324 GCCAGAACGAGTCGCTCC 60.507 66.667 13.59 1.66 0.00 4.70
1878 2648 3.134127 GCCGGCATGACCTTGTCC 61.134 66.667 24.80 0.00 35.61 4.02
1884 2654 2.680805 CGGCATGACCTTGTCCATTACT 60.681 50.000 0.00 0.00 35.61 2.24
1893 2663 3.535561 CTTGTCCATTACTGCCGAGAAT 58.464 45.455 0.00 0.00 0.00 2.40
1928 2698 1.580059 CCTTAAGGACTAGTGCCCCA 58.420 55.000 17.21 0.00 37.39 4.96
1936 2706 2.688666 TAGTGCCCCAGAGCCCTG 60.689 66.667 0.00 0.00 40.09 4.45
1949 2719 0.109342 AGCCCTGGTTGTTGAGTCAG 59.891 55.000 0.00 0.00 0.00 3.51
1970 2740 3.743521 GTTTAACAAACTAGGGGTCGGT 58.256 45.455 0.00 0.00 38.35 4.69
1971 2741 4.136796 GTTTAACAAACTAGGGGTCGGTT 58.863 43.478 0.00 0.00 38.35 4.44
1972 2742 4.436113 TTAACAAACTAGGGGTCGGTTT 57.564 40.909 0.00 0.00 34.10 3.27
1974 2744 1.530323 CAAACTAGGGGTCGGTTTGG 58.470 55.000 9.15 0.00 43.19 3.28
1975 2745 1.142936 AAACTAGGGGTCGGTTTGGT 58.857 50.000 0.00 0.00 32.84 3.67
1976 2746 1.142936 AACTAGGGGTCGGTTTGGTT 58.857 50.000 0.00 0.00 0.00 3.67
1977 2747 0.399075 ACTAGGGGTCGGTTTGGTTG 59.601 55.000 0.00 0.00 0.00 3.77
1978 2748 0.958876 CTAGGGGTCGGTTTGGTTGC 60.959 60.000 0.00 0.00 0.00 4.17
1979 2749 2.414658 TAGGGGTCGGTTTGGTTGCC 62.415 60.000 0.00 0.00 0.00 4.52
1980 2750 2.203437 GGGTCGGTTTGGTTGCCT 60.203 61.111 0.00 0.00 0.00 4.75
1981 2751 1.830847 GGGTCGGTTTGGTTGCCTT 60.831 57.895 0.00 0.00 0.00 4.35
1982 2752 1.658114 GGTCGGTTTGGTTGCCTTC 59.342 57.895 0.00 0.00 0.00 3.46
1983 2753 1.658114 GTCGGTTTGGTTGCCTTCC 59.342 57.895 0.00 0.00 0.00 3.46
1984 2754 0.822121 GTCGGTTTGGTTGCCTTCCT 60.822 55.000 0.00 0.00 0.00 3.36
1985 2755 0.821711 TCGGTTTGGTTGCCTTCCTG 60.822 55.000 0.00 0.00 0.00 3.86
1986 2756 1.805428 CGGTTTGGTTGCCTTCCTGG 61.805 60.000 0.00 0.00 39.35 4.45
1995 2765 4.800554 CCTTCCTGGCGAACTTGT 57.199 55.556 0.00 0.00 0.00 3.16
1996 2766 2.247790 CCTTCCTGGCGAACTTGTG 58.752 57.895 0.00 0.00 0.00 3.33
1997 2767 1.576421 CTTCCTGGCGAACTTGTGC 59.424 57.895 0.00 0.00 0.00 4.57
1998 2768 0.886490 CTTCCTGGCGAACTTGTGCT 60.886 55.000 0.00 0.00 0.00 4.40
1999 2769 0.465460 TTCCTGGCGAACTTGTGCTT 60.465 50.000 0.00 0.00 0.00 3.91
2000 2770 1.165907 TCCTGGCGAACTTGTGCTTG 61.166 55.000 0.00 0.00 0.00 4.01
2001 2771 1.165907 CCTGGCGAACTTGTGCTTGA 61.166 55.000 0.00 0.00 0.00 3.02
2002 2772 0.040958 CTGGCGAACTTGTGCTTGAC 60.041 55.000 0.00 0.00 0.00 3.18
2003 2773 1.282875 GGCGAACTTGTGCTTGACC 59.717 57.895 0.00 0.00 0.00 4.02
2004 2774 1.444119 GGCGAACTTGTGCTTGACCA 61.444 55.000 0.00 0.00 0.00 4.02
2005 2775 0.317020 GCGAACTTGTGCTTGACCAC 60.317 55.000 0.00 0.00 36.28 4.16
2006 2776 1.013596 CGAACTTGTGCTTGACCACA 58.986 50.000 0.00 0.00 43.48 4.17
2011 2781 2.861364 TGTGCTTGACCACAAACGT 58.139 47.368 0.00 0.00 42.33 3.99
2012 2782 0.449786 TGTGCTTGACCACAAACGTG 59.550 50.000 0.00 0.00 42.33 4.49
2013 2783 0.865639 GTGCTTGACCACAAACGTGC 60.866 55.000 0.00 0.00 35.49 5.34
2014 2784 1.299089 GCTTGACCACAAACGTGCC 60.299 57.895 0.00 0.00 35.49 5.01
2015 2785 1.724582 GCTTGACCACAAACGTGCCT 61.725 55.000 0.00 0.00 35.49 4.75
2016 2786 0.029300 CTTGACCACAAACGTGCCTG 59.971 55.000 0.00 0.00 35.49 4.85
2017 2787 0.393132 TTGACCACAAACGTGCCTGA 60.393 50.000 0.00 0.00 32.73 3.86
2018 2788 0.393132 TGACCACAAACGTGCCTGAA 60.393 50.000 0.00 0.00 32.73 3.02
2019 2789 0.736053 GACCACAAACGTGCCTGAAA 59.264 50.000 0.00 0.00 32.73 2.69
2020 2790 0.454196 ACCACAAACGTGCCTGAAAC 59.546 50.000 0.00 0.00 32.73 2.78
2021 2791 0.248866 CCACAAACGTGCCTGAAACC 60.249 55.000 0.00 0.00 32.73 3.27
2022 2792 0.738389 CACAAACGTGCCTGAAACCT 59.262 50.000 0.00 0.00 0.00 3.50
2023 2793 0.738389 ACAAACGTGCCTGAAACCTG 59.262 50.000 0.00 0.00 0.00 4.00
2024 2794 0.594796 CAAACGTGCCTGAAACCTGC 60.595 55.000 0.00 0.00 0.00 4.85
2025 2795 1.734388 AAACGTGCCTGAAACCTGCC 61.734 55.000 0.00 0.00 0.00 4.85
2026 2796 2.281761 CGTGCCTGAAACCTGCCT 60.282 61.111 0.00 0.00 0.00 4.75
2027 2797 2.620112 CGTGCCTGAAACCTGCCTG 61.620 63.158 0.00 0.00 0.00 4.85
2028 2798 2.115910 TGCCTGAAACCTGCCTGG 59.884 61.111 0.00 0.00 42.93 4.45
2029 2799 2.677875 GCCTGAAACCTGCCTGGG 60.678 66.667 0.00 0.00 41.11 4.45
2030 2800 3.170362 CCTGAAACCTGCCTGGGA 58.830 61.111 0.00 0.00 41.11 4.37
2031 2801 1.303643 CCTGAAACCTGCCTGGGAC 60.304 63.158 0.00 0.00 41.11 4.46
2032 2802 1.763770 CTGAAACCTGCCTGGGACT 59.236 57.895 0.00 0.00 41.11 3.85
2033 2803 0.111253 CTGAAACCTGCCTGGGACTT 59.889 55.000 0.00 0.00 41.11 3.01
2034 2804 0.178992 TGAAACCTGCCTGGGACTTG 60.179 55.000 0.00 0.00 41.11 3.16
2035 2805 0.178990 GAAACCTGCCTGGGACTTGT 60.179 55.000 0.00 0.00 41.11 3.16
2036 2806 0.261696 AAACCTGCCTGGGACTTGTT 59.738 50.000 0.00 0.00 41.11 2.83
2037 2807 0.261696 AACCTGCCTGGGACTTGTTT 59.738 50.000 0.00 0.00 41.11 2.83
2038 2808 0.468029 ACCTGCCTGGGACTTGTTTG 60.468 55.000 0.00 0.00 41.11 2.93
2039 2809 1.181098 CCTGCCTGGGACTTGTTTGG 61.181 60.000 0.00 0.00 0.00 3.28
2040 2810 0.178992 CTGCCTGGGACTTGTTTGGA 60.179 55.000 0.00 0.00 0.00 3.53
2041 2811 0.482446 TGCCTGGGACTTGTTTGGAT 59.518 50.000 0.00 0.00 0.00 3.41
2042 2812 0.890683 GCCTGGGACTTGTTTGGATG 59.109 55.000 0.00 0.00 0.00 3.51
2043 2813 1.549203 CCTGGGACTTGTTTGGATGG 58.451 55.000 0.00 0.00 0.00 3.51
2044 2814 1.203050 CCTGGGACTTGTTTGGATGGT 60.203 52.381 0.00 0.00 0.00 3.55
2045 2815 2.041081 CCTGGGACTTGTTTGGATGGTA 59.959 50.000 0.00 0.00 0.00 3.25
2046 2816 3.309121 CCTGGGACTTGTTTGGATGGTAT 60.309 47.826 0.00 0.00 0.00 2.73
2047 2817 3.947834 CTGGGACTTGTTTGGATGGTATC 59.052 47.826 0.00 0.00 0.00 2.24
2061 2831 6.174720 GGATGGTATCCTGAGTATTTGACA 57.825 41.667 0.61 0.00 46.19 3.58
2062 2832 6.591935 GGATGGTATCCTGAGTATTTGACAA 58.408 40.000 0.61 0.00 46.19 3.18
2063 2833 6.483640 GGATGGTATCCTGAGTATTTGACAAC 59.516 42.308 0.61 0.00 46.19 3.32
2064 2834 6.367374 TGGTATCCTGAGTATTTGACAACA 57.633 37.500 0.00 0.00 0.00 3.33
2065 2835 6.957631 TGGTATCCTGAGTATTTGACAACAT 58.042 36.000 0.00 0.00 0.00 2.71
2066 2836 6.823182 TGGTATCCTGAGTATTTGACAACATG 59.177 38.462 0.00 0.00 0.00 3.21
2067 2837 5.824904 ATCCTGAGTATTTGACAACATGC 57.175 39.130 0.00 0.00 0.00 4.06
2068 2838 4.009675 TCCTGAGTATTTGACAACATGCC 58.990 43.478 0.00 0.00 0.00 4.40
2069 2839 4.012374 CCTGAGTATTTGACAACATGCCT 58.988 43.478 0.00 0.00 0.00 4.75
2070 2840 4.142534 CCTGAGTATTTGACAACATGCCTG 60.143 45.833 0.00 0.00 0.00 4.85
2071 2841 4.650734 TGAGTATTTGACAACATGCCTGA 58.349 39.130 0.00 0.00 0.00 3.86
2072 2842 4.455533 TGAGTATTTGACAACATGCCTGAC 59.544 41.667 0.00 0.00 0.00 3.51
2073 2843 3.758554 AGTATTTGACAACATGCCTGACC 59.241 43.478 0.00 0.00 0.00 4.02
2074 2844 2.363306 TTTGACAACATGCCTGACCT 57.637 45.000 0.00 0.00 0.00 3.85
2075 2845 1.608055 TTGACAACATGCCTGACCTG 58.392 50.000 0.00 0.00 0.00 4.00
2076 2846 0.764271 TGACAACATGCCTGACCTGA 59.236 50.000 0.00 0.00 0.00 3.86
2077 2847 1.142667 TGACAACATGCCTGACCTGAA 59.857 47.619 0.00 0.00 0.00 3.02
2078 2848 2.229792 GACAACATGCCTGACCTGAAA 58.770 47.619 0.00 0.00 0.00 2.69
2079 2849 2.622942 GACAACATGCCTGACCTGAAAA 59.377 45.455 0.00 0.00 0.00 2.29
2080 2850 3.030291 ACAACATGCCTGACCTGAAAAA 58.970 40.909 0.00 0.00 0.00 1.94
2081 2851 3.068590 ACAACATGCCTGACCTGAAAAAG 59.931 43.478 0.00 0.00 0.00 2.27
2082 2852 1.615392 ACATGCCTGACCTGAAAAAGC 59.385 47.619 0.00 0.00 0.00 3.51
2083 2853 1.614903 CATGCCTGACCTGAAAAAGCA 59.385 47.619 0.00 0.00 0.00 3.91
2084 2854 1.999648 TGCCTGACCTGAAAAAGCAT 58.000 45.000 0.00 0.00 0.00 3.79
2085 2855 1.614903 TGCCTGACCTGAAAAAGCATG 59.385 47.619 0.00 0.00 0.00 4.06
2086 2856 1.615392 GCCTGACCTGAAAAAGCATGT 59.385 47.619 0.00 0.00 0.00 3.21
2087 2857 2.352127 GCCTGACCTGAAAAAGCATGTC 60.352 50.000 0.00 0.00 35.03 3.06
2088 2858 2.095567 CCTGACCTGAAAAAGCATGTCG 60.096 50.000 0.00 0.00 36.57 4.35
2089 2859 2.549754 CTGACCTGAAAAAGCATGTCGT 59.450 45.455 0.00 0.00 36.57 4.34
2090 2860 2.548057 TGACCTGAAAAAGCATGTCGTC 59.452 45.455 0.00 0.00 36.57 4.20
2091 2861 2.548057 GACCTGAAAAAGCATGTCGTCA 59.452 45.455 0.00 0.00 0.00 4.35
2092 2862 3.149196 ACCTGAAAAAGCATGTCGTCAT 58.851 40.909 0.00 0.00 34.21 3.06
2093 2863 3.189287 ACCTGAAAAAGCATGTCGTCATC 59.811 43.478 0.00 0.00 31.15 2.92
2094 2864 3.189080 CCTGAAAAAGCATGTCGTCATCA 59.811 43.478 0.00 0.00 31.15 3.07
2095 2865 4.142534 CCTGAAAAAGCATGTCGTCATCAT 60.143 41.667 0.00 0.00 31.15 2.45
2096 2866 5.375417 TGAAAAAGCATGTCGTCATCATT 57.625 34.783 0.00 0.00 31.15 2.57
2097 2867 6.403527 CCTGAAAAAGCATGTCGTCATCATTA 60.404 38.462 0.00 0.00 31.15 1.90
2098 2868 6.545508 TGAAAAAGCATGTCGTCATCATTAG 58.454 36.000 0.00 0.00 31.15 1.73
2099 2869 4.542662 AAAGCATGTCGTCATCATTAGC 57.457 40.909 0.00 0.00 31.15 3.09
2100 2870 2.487934 AGCATGTCGTCATCATTAGCC 58.512 47.619 0.00 0.00 31.15 3.93
2101 2871 2.103771 AGCATGTCGTCATCATTAGCCT 59.896 45.455 0.00 0.00 31.15 4.58
2102 2872 2.222678 GCATGTCGTCATCATTAGCCTG 59.777 50.000 0.00 0.00 31.15 4.85
2103 2873 2.602257 TGTCGTCATCATTAGCCTGG 57.398 50.000 0.00 0.00 0.00 4.45
2104 2874 1.138859 TGTCGTCATCATTAGCCTGGG 59.861 52.381 0.00 0.00 0.00 4.45
2105 2875 1.139058 GTCGTCATCATTAGCCTGGGT 59.861 52.381 2.98 2.98 0.00 4.51
2106 2876 1.412710 TCGTCATCATTAGCCTGGGTC 59.587 52.381 0.00 0.00 0.00 4.46
2107 2877 1.138859 CGTCATCATTAGCCTGGGTCA 59.861 52.381 0.00 0.00 0.00 4.02
2108 2878 2.419990 CGTCATCATTAGCCTGGGTCAA 60.420 50.000 0.00 0.00 0.00 3.18
2109 2879 3.745480 CGTCATCATTAGCCTGGGTCAAT 60.745 47.826 0.00 0.00 0.00 2.57
2110 2880 3.817647 GTCATCATTAGCCTGGGTCAATC 59.182 47.826 0.00 0.00 0.00 2.67
2111 2881 3.152341 CATCATTAGCCTGGGTCAATCC 58.848 50.000 0.00 0.00 0.00 3.01
2112 2882 2.204463 TCATTAGCCTGGGTCAATCCA 58.796 47.619 0.00 0.00 38.11 3.41
2118 2888 4.424711 TGGGTCAATCCAGGCGCC 62.425 66.667 21.89 21.89 38.11 6.53
2119 2889 4.424711 GGGTCAATCCAGGCGCCA 62.425 66.667 31.54 8.70 38.11 5.69
2120 2890 3.134127 GGTCAATCCAGGCGCCAC 61.134 66.667 31.54 16.10 35.97 5.01
2121 2891 3.134127 GTCAATCCAGGCGCCACC 61.134 66.667 31.54 0.33 39.61 4.61
2122 2892 3.645660 TCAATCCAGGCGCCACCA 61.646 61.111 31.54 11.92 43.14 4.17
2123 2893 2.440796 CAATCCAGGCGCCACCAT 60.441 61.111 31.54 13.94 43.14 3.55
2124 2894 2.053865 CAATCCAGGCGCCACCATT 61.054 57.895 31.54 19.25 43.14 3.16
2125 2895 0.751277 CAATCCAGGCGCCACCATTA 60.751 55.000 31.54 7.86 43.14 1.90
2126 2896 0.466189 AATCCAGGCGCCACCATTAG 60.466 55.000 31.54 8.60 43.14 1.73
2127 2897 2.965716 ATCCAGGCGCCACCATTAGC 62.966 60.000 31.54 0.00 43.14 3.09
2130 2900 3.211963 GGCGCCACCATTAGCCTG 61.212 66.667 24.80 0.00 45.67 4.85
2131 2901 2.124736 GCGCCACCATTAGCCTGA 60.125 61.111 0.00 0.00 0.00 3.86
2132 2902 2.182842 GCGCCACCATTAGCCTGAG 61.183 63.158 0.00 0.00 0.00 3.35
2133 2903 1.524621 CGCCACCATTAGCCTGAGG 60.525 63.158 0.00 0.00 0.00 3.86
2150 2920 2.361104 GCCAGGCCACCGATTTCA 60.361 61.111 5.01 0.00 0.00 2.69
2151 2921 2.700773 GCCAGGCCACCGATTTCAC 61.701 63.158 5.01 0.00 0.00 3.18
2152 2922 1.303236 CCAGGCCACCGATTTCACA 60.303 57.895 5.01 0.00 0.00 3.58
2153 2923 0.893270 CCAGGCCACCGATTTCACAA 60.893 55.000 5.01 0.00 0.00 3.33
2154 2924 0.523072 CAGGCCACCGATTTCACAAG 59.477 55.000 5.01 0.00 0.00 3.16
2155 2925 1.212751 GGCCACCGATTTCACAAGC 59.787 57.895 0.00 0.00 0.00 4.01
2156 2926 1.212751 GCCACCGATTTCACAAGCC 59.787 57.895 0.00 0.00 0.00 4.35
2157 2927 1.244019 GCCACCGATTTCACAAGCCT 61.244 55.000 0.00 0.00 0.00 4.58
2158 2928 0.523072 CCACCGATTTCACAAGCCTG 59.477 55.000 0.00 0.00 0.00 4.85
2159 2929 0.523072 CACCGATTTCACAAGCCTGG 59.477 55.000 0.00 0.00 0.00 4.45
2160 2930 0.110486 ACCGATTTCACAAGCCTGGT 59.890 50.000 0.00 0.00 0.00 4.00
2161 2931 0.523072 CCGATTTCACAAGCCTGGTG 59.477 55.000 0.00 0.00 37.60 4.17
2162 2932 0.523072 CGATTTCACAAGCCTGGTGG 59.477 55.000 0.00 0.00 36.90 4.61
2163 2933 0.890683 GATTTCACAAGCCTGGTGGG 59.109 55.000 0.00 0.00 36.90 4.61
2165 2935 0.754957 TTTCACAAGCCTGGTGGGTG 60.755 55.000 0.00 1.58 44.35 4.61
2166 2936 3.297620 CACAAGCCTGGTGGGTGC 61.298 66.667 0.00 0.00 44.35 5.01
2167 2937 4.603535 ACAAGCCTGGTGGGTGCC 62.604 66.667 0.00 0.00 44.35 5.01
2168 2938 4.290622 CAAGCCTGGTGGGTGCCT 62.291 66.667 0.00 0.00 44.35 4.75
2169 2939 4.290622 AAGCCTGGTGGGTGCCTG 62.291 66.667 0.00 0.00 44.35 4.85
2173 2943 4.601794 CTGGTGGGTGCCTGGCAA 62.602 66.667 25.23 4.94 41.47 4.52
2174 2944 3.892104 CTGGTGGGTGCCTGGCAAT 62.892 63.158 25.23 0.00 41.47 3.56
2175 2945 3.384532 GGTGGGTGCCTGGCAATG 61.385 66.667 25.23 0.00 41.47 2.82
2176 2946 3.384532 GTGGGTGCCTGGCAATGG 61.385 66.667 25.23 0.00 41.47 3.16
2177 2947 4.700448 TGGGTGCCTGGCAATGGG 62.700 66.667 25.23 0.00 41.47 4.00
2178 2948 4.702274 GGGTGCCTGGCAATGGGT 62.702 66.667 25.23 0.00 41.47 4.51
2179 2949 2.604382 GGTGCCTGGCAATGGGTT 60.604 61.111 25.23 0.00 41.47 4.11
2180 2950 2.658422 GTGCCTGGCAATGGGTTG 59.342 61.111 25.23 0.00 41.47 3.77
2181 2951 2.604079 TGCCTGGCAATGGGTTGG 60.604 61.111 21.08 0.00 34.76 3.77
2182 2952 2.604382 GCCTGGCAATGGGTTGGT 60.604 61.111 15.17 0.00 35.83 3.67
2183 2953 2.946346 GCCTGGCAATGGGTTGGTG 61.946 63.158 15.17 0.00 35.83 4.17
2184 2954 1.533753 CCTGGCAATGGGTTGGTGT 60.534 57.895 0.00 0.00 35.83 4.16
2185 2955 1.120795 CCTGGCAATGGGTTGGTGTT 61.121 55.000 0.00 0.00 35.83 3.32
2186 2956 1.626686 CTGGCAATGGGTTGGTGTTA 58.373 50.000 0.00 0.00 35.83 2.41
2187 2957 1.967066 CTGGCAATGGGTTGGTGTTAA 59.033 47.619 0.00 0.00 35.83 2.01
2188 2958 2.366916 CTGGCAATGGGTTGGTGTTAAA 59.633 45.455 0.00 0.00 35.83 1.52
2189 2959 2.771943 TGGCAATGGGTTGGTGTTAAAA 59.228 40.909 0.00 0.00 35.83 1.52
2190 2960 3.392616 TGGCAATGGGTTGGTGTTAAAAT 59.607 39.130 0.00 0.00 35.83 1.82
2191 2961 4.593206 TGGCAATGGGTTGGTGTTAAAATA 59.407 37.500 0.00 0.00 35.83 1.40
2192 2962 5.249393 TGGCAATGGGTTGGTGTTAAAATAT 59.751 36.000 0.00 0.00 35.83 1.28
2193 2963 6.176896 GGCAATGGGTTGGTGTTAAAATATT 58.823 36.000 0.00 0.00 35.83 1.28
2194 2964 6.315144 GGCAATGGGTTGGTGTTAAAATATTC 59.685 38.462 0.00 0.00 35.83 1.75
2195 2965 6.876257 GCAATGGGTTGGTGTTAAAATATTCA 59.124 34.615 0.00 0.00 35.83 2.57
2196 2966 7.064490 GCAATGGGTTGGTGTTAAAATATTCAG 59.936 37.037 0.00 0.00 35.83 3.02
2197 2967 6.031751 TGGGTTGGTGTTAAAATATTCAGC 57.968 37.500 0.00 0.00 0.00 4.26
2198 2968 5.777732 TGGGTTGGTGTTAAAATATTCAGCT 59.222 36.000 5.87 0.00 0.00 4.24
2199 2969 6.099341 GGGTTGGTGTTAAAATATTCAGCTG 58.901 40.000 7.63 7.63 0.00 4.24
2200 2970 6.099341 GGTTGGTGTTAAAATATTCAGCTGG 58.901 40.000 15.13 0.00 0.00 4.85
2201 2971 5.913137 TGGTGTTAAAATATTCAGCTGGG 57.087 39.130 15.13 0.00 0.00 4.45
2202 2972 4.159506 TGGTGTTAAAATATTCAGCTGGGC 59.840 41.667 15.13 0.00 0.00 5.36
2203 2973 4.441495 GGTGTTAAAATATTCAGCTGGGCC 60.441 45.833 15.13 0.00 0.00 5.80
2204 2974 4.159506 GTGTTAAAATATTCAGCTGGGCCA 59.840 41.667 15.13 5.85 0.00 5.36
2205 2975 4.402155 TGTTAAAATATTCAGCTGGGCCAG 59.598 41.667 29.44 29.44 34.12 4.85
2206 2976 2.834638 AAATATTCAGCTGGGCCAGT 57.165 45.000 32.80 17.89 33.43 4.00
2207 2977 2.062971 AATATTCAGCTGGGCCAGTG 57.937 50.000 32.80 26.87 33.43 3.66
2208 2978 1.216064 ATATTCAGCTGGGCCAGTGA 58.784 50.000 32.80 28.43 33.43 3.41
2209 2979 0.543277 TATTCAGCTGGGCCAGTGAG 59.457 55.000 32.80 22.31 33.43 3.51
2210 2980 2.833604 ATTCAGCTGGGCCAGTGAGC 62.834 60.000 32.80 20.57 33.43 4.26
2211 2981 4.031129 CAGCTGGGCCAGTGAGCT 62.031 66.667 32.80 22.53 43.99 4.09
2212 2982 3.715097 AGCTGGGCCAGTGAGCTC 61.715 66.667 32.80 16.20 38.78 4.09
2213 2983 4.792804 GCTGGGCCAGTGAGCTCC 62.793 72.222 32.80 12.15 33.43 4.70
2214 2984 3.324930 CTGGGCCAGTGAGCTCCA 61.325 66.667 25.74 0.00 33.69 3.86
2215 2985 3.618780 CTGGGCCAGTGAGCTCCAC 62.619 68.421 25.74 9.60 46.03 4.02
2227 2997 2.594541 GCTCCACAGCTATGCGTAC 58.405 57.895 0.00 0.00 43.09 3.67
2228 2998 0.103208 GCTCCACAGCTATGCGTACT 59.897 55.000 0.00 0.00 43.09 2.73
2229 2999 1.845266 CTCCACAGCTATGCGTACTG 58.155 55.000 11.61 11.61 37.45 2.74
2230 3000 1.135139 CTCCACAGCTATGCGTACTGT 59.865 52.381 12.57 12.57 45.25 3.55
2231 3001 1.548719 TCCACAGCTATGCGTACTGTT 59.451 47.619 14.62 3.34 42.59 3.16
2232 3002 1.660607 CCACAGCTATGCGTACTGTTG 59.339 52.381 14.62 10.09 42.59 3.33
2233 3003 1.660607 CACAGCTATGCGTACTGTTGG 59.339 52.381 14.62 5.57 42.59 3.77
2234 3004 1.275291 ACAGCTATGCGTACTGTTGGT 59.725 47.619 12.57 0.00 41.78 3.67
2235 3005 1.927174 CAGCTATGCGTACTGTTGGTC 59.073 52.381 0.00 0.00 0.00 4.02
2236 3006 1.134788 AGCTATGCGTACTGTTGGTCC 60.135 52.381 0.00 0.00 0.00 4.46
2237 3007 1.134788 GCTATGCGTACTGTTGGTCCT 60.135 52.381 0.00 0.00 0.00 3.85
2238 3008 2.100252 GCTATGCGTACTGTTGGTCCTA 59.900 50.000 0.00 0.00 0.00 2.94
2239 3009 3.243771 GCTATGCGTACTGTTGGTCCTAT 60.244 47.826 0.00 0.00 0.00 2.57
2240 3010 4.022589 GCTATGCGTACTGTTGGTCCTATA 60.023 45.833 0.00 0.00 0.00 1.31
2241 3011 5.508489 GCTATGCGTACTGTTGGTCCTATAA 60.508 44.000 0.00 0.00 0.00 0.98
2242 3012 4.804868 TGCGTACTGTTGGTCCTATAAA 57.195 40.909 0.00 0.00 0.00 1.40
2243 3013 5.149973 TGCGTACTGTTGGTCCTATAAAA 57.850 39.130 0.00 0.00 0.00 1.52
2244 3014 5.736813 TGCGTACTGTTGGTCCTATAAAAT 58.263 37.500 0.00 0.00 0.00 1.82
2245 3015 6.876155 TGCGTACTGTTGGTCCTATAAAATA 58.124 36.000 0.00 0.00 0.00 1.40
2246 3016 7.502696 TGCGTACTGTTGGTCCTATAAAATAT 58.497 34.615 0.00 0.00 0.00 1.28
2247 3017 7.988599 TGCGTACTGTTGGTCCTATAAAATATT 59.011 33.333 0.00 0.00 0.00 1.28
2248 3018 8.493547 GCGTACTGTTGGTCCTATAAAATATTC 58.506 37.037 0.00 0.00 0.00 1.75
2249 3019 9.760077 CGTACTGTTGGTCCTATAAAATATTCT 57.240 33.333 0.00 0.00 0.00 2.40
2266 3036 6.890979 ATATTCTCTAATGCTTTTCCAGGC 57.109 37.500 0.00 0.00 0.00 4.85
2267 3037 3.004752 TCTCTAATGCTTTTCCAGGCC 57.995 47.619 0.00 0.00 0.00 5.19
2268 3038 2.308570 TCTCTAATGCTTTTCCAGGCCA 59.691 45.455 5.01 0.00 0.00 5.36
2269 3039 2.686915 CTCTAATGCTTTTCCAGGCCAG 59.313 50.000 5.01 0.00 0.00 4.85
2270 3040 1.753073 CTAATGCTTTTCCAGGCCAGG 59.247 52.381 8.15 8.15 0.00 4.45
2271 3041 0.906282 AATGCTTTTCCAGGCCAGGG 60.906 55.000 15.24 10.97 0.00 4.45
2272 3042 3.385384 GCTTTTCCAGGCCAGGGC 61.385 66.667 15.24 4.33 41.06 5.19
2273 3043 2.118076 CTTTTCCAGGCCAGGGCA 59.882 61.111 15.24 0.00 44.11 5.36
2274 3044 1.305549 CTTTTCCAGGCCAGGGCAT 60.306 57.895 15.24 3.40 44.11 4.40
2275 3045 1.305213 TTTTCCAGGCCAGGGCATC 60.305 57.895 15.24 0.00 44.11 3.91
2276 3046 2.091640 TTTTCCAGGCCAGGGCATCA 62.092 55.000 15.24 0.00 44.11 3.07
2277 3047 2.091640 TTTCCAGGCCAGGGCATCAA 62.092 55.000 15.24 0.00 44.11 2.57
2278 3048 2.757099 CCAGGCCAGGGCATCAAC 60.757 66.667 16.94 0.00 44.11 3.18
2279 3049 2.757099 CAGGCCAGGGCATCAACC 60.757 66.667 16.94 0.00 44.11 3.77
2280 3050 3.267233 AGGCCAGGGCATCAACCA 61.267 61.111 16.94 0.00 44.11 3.67
2281 3051 2.283821 GGCCAGGGCATCAACCAA 60.284 61.111 13.10 0.00 44.11 3.67
2282 3052 1.912763 GGCCAGGGCATCAACCAAA 60.913 57.895 13.10 0.00 44.11 3.28
2283 3053 1.293179 GCCAGGGCATCAACCAAAC 59.707 57.895 5.20 0.00 41.49 2.93
2284 3054 1.586028 CCAGGGCATCAACCAAACG 59.414 57.895 0.00 0.00 0.00 3.60
2285 3055 1.178534 CCAGGGCATCAACCAAACGT 61.179 55.000 0.00 0.00 0.00 3.99
2286 3056 0.673437 CAGGGCATCAACCAAACGTT 59.327 50.000 0.00 0.00 33.90 3.99
2287 3057 1.883275 CAGGGCATCAACCAAACGTTA 59.117 47.619 0.00 0.00 31.77 3.18
2288 3058 2.491693 CAGGGCATCAACCAAACGTTAT 59.508 45.455 0.00 0.00 31.77 1.89
2289 3059 3.056891 CAGGGCATCAACCAAACGTTATT 60.057 43.478 0.00 0.00 31.77 1.40
2290 3060 3.192633 AGGGCATCAACCAAACGTTATTC 59.807 43.478 0.00 0.00 31.77 1.75
2291 3061 3.192633 GGGCATCAACCAAACGTTATTCT 59.807 43.478 0.00 0.00 31.77 2.40
2292 3062 4.412207 GGCATCAACCAAACGTTATTCTC 58.588 43.478 0.00 0.00 31.77 2.87
2293 3063 4.088648 GCATCAACCAAACGTTATTCTCG 58.911 43.478 0.00 0.00 31.77 4.04
2294 3064 4.378046 GCATCAACCAAACGTTATTCTCGT 60.378 41.667 0.00 0.00 43.45 4.18
2295 3065 5.163933 GCATCAACCAAACGTTATTCTCGTA 60.164 40.000 0.00 0.00 40.69 3.43
2296 3066 6.466812 CATCAACCAAACGTTATTCTCGTAG 58.533 40.000 0.00 0.00 40.69 3.51
2297 3067 4.925054 TCAACCAAACGTTATTCTCGTAGG 59.075 41.667 0.00 0.00 40.69 3.18
2298 3068 3.256558 ACCAAACGTTATTCTCGTAGGC 58.743 45.455 0.00 0.00 40.69 3.93
2299 3069 2.606272 CCAAACGTTATTCTCGTAGGCC 59.394 50.000 0.00 0.00 40.69 5.19
2300 3070 3.255725 CAAACGTTATTCTCGTAGGCCA 58.744 45.455 5.01 0.00 40.69 5.36
2301 3071 2.865343 ACGTTATTCTCGTAGGCCAG 57.135 50.000 5.01 0.00 39.78 4.85
2302 3072 1.202382 ACGTTATTCTCGTAGGCCAGC 60.202 52.381 5.01 0.00 39.78 4.85
2303 3073 1.867166 GTTATTCTCGTAGGCCAGCC 58.133 55.000 5.01 0.00 0.00 4.85
2320 3090 3.976704 CCTGACCAGGCATAAACCA 57.023 52.632 2.75 0.00 42.44 3.67
2321 3091 1.463674 CCTGACCAGGCATAAACCAC 58.536 55.000 2.75 0.00 42.44 4.16
2322 3092 1.271871 CCTGACCAGGCATAAACCACA 60.272 52.381 2.75 0.00 42.44 4.17
2323 3093 2.086869 CTGACCAGGCATAAACCACAG 58.913 52.381 0.00 0.00 0.00 3.66
2324 3094 1.271871 TGACCAGGCATAAACCACAGG 60.272 52.381 0.00 0.00 0.00 4.00
2325 3095 0.611896 ACCAGGCATAAACCACAGGC 60.612 55.000 0.00 0.00 0.00 4.85
2326 3096 1.656818 CCAGGCATAAACCACAGGCG 61.657 60.000 0.00 0.00 0.00 5.52
2327 3097 2.046285 AGGCATAAACCACAGGCGC 61.046 57.895 0.00 0.00 0.00 6.53
2328 3098 2.046285 GGCATAAACCACAGGCGCT 61.046 57.895 7.64 0.00 0.00 5.92
2329 3099 1.429423 GCATAAACCACAGGCGCTC 59.571 57.895 7.64 0.00 0.00 5.03
2330 3100 1.026718 GCATAAACCACAGGCGCTCT 61.027 55.000 7.64 0.00 0.00 4.09
2331 3101 1.009829 CATAAACCACAGGCGCTCTC 58.990 55.000 7.64 0.00 0.00 3.20
2332 3102 0.613260 ATAAACCACAGGCGCTCTCA 59.387 50.000 7.64 0.00 0.00 3.27
2333 3103 0.037326 TAAACCACAGGCGCTCTCAG 60.037 55.000 7.64 0.00 0.00 3.35
2334 3104 2.738213 AAACCACAGGCGCTCTCAGG 62.738 60.000 7.64 9.18 0.00 3.86
2336 3106 4.079850 CACAGGCGCTCTCAGGCT 62.080 66.667 7.64 0.00 45.83 4.58
2337 3107 3.768922 ACAGGCGCTCTCAGGCTC 61.769 66.667 7.64 0.00 42.91 4.70
2338 3108 4.869440 CAGGCGCTCTCAGGCTCG 62.869 72.222 7.64 0.00 42.91 5.03
2340 3110 4.443266 GGCGCTCTCAGGCTCGTT 62.443 66.667 7.64 0.00 0.00 3.85
2341 3111 2.883253 GCGCTCTCAGGCTCGTTC 60.883 66.667 0.00 0.00 0.00 3.95
2342 3112 2.202676 CGCTCTCAGGCTCGTTCC 60.203 66.667 0.00 0.00 0.00 3.62
2343 3113 2.202676 GCTCTCAGGCTCGTTCCG 60.203 66.667 0.00 0.00 0.00 4.30
2344 3114 2.492090 CTCTCAGGCTCGTTCCGG 59.508 66.667 0.00 0.00 0.00 5.14
2345 3115 3.068691 TCTCAGGCTCGTTCCGGG 61.069 66.667 0.00 0.00 0.00 5.73
2355 3125 3.292159 GTTCCGGGCGTTGGCTTT 61.292 61.111 0.00 0.00 39.81 3.51
2356 3126 2.519780 TTCCGGGCGTTGGCTTTT 60.520 55.556 0.00 0.00 39.81 2.27
2357 3127 2.128507 TTCCGGGCGTTGGCTTTTT 61.129 52.632 0.00 0.00 39.81 1.94
2371 3141 2.915137 TTTTTCAGGCACCCCGGC 60.915 61.111 0.00 0.00 41.61 6.13
2385 3155 4.323477 CGGCCGGGACTCAAACCA 62.323 66.667 20.10 0.00 0.00 3.67
2386 3156 2.114411 GGCCGGGACTCAAACCAA 59.886 61.111 2.18 0.00 0.00 3.67
2387 3157 1.529713 GGCCGGGACTCAAACCAAA 60.530 57.895 2.18 0.00 0.00 3.28
2388 3158 1.658114 GCCGGGACTCAAACCAAAC 59.342 57.895 2.18 0.00 0.00 2.93
2389 3159 1.104577 GCCGGGACTCAAACCAAACA 61.105 55.000 2.18 0.00 0.00 2.83
2390 3160 1.394618 CCGGGACTCAAACCAAACAA 58.605 50.000 0.00 0.00 0.00 2.83
2391 3161 1.336755 CCGGGACTCAAACCAAACAAG 59.663 52.381 0.00 0.00 0.00 3.16
2392 3162 1.269051 CGGGACTCAAACCAAACAAGC 60.269 52.381 0.00 0.00 0.00 4.01
2393 3163 1.068588 GGGACTCAAACCAAACAAGCC 59.931 52.381 0.00 0.00 0.00 4.35
2394 3164 1.068588 GGACTCAAACCAAACAAGCCC 59.931 52.381 0.00 0.00 0.00 5.19
2395 3165 2.031870 GACTCAAACCAAACAAGCCCT 58.968 47.619 0.00 0.00 0.00 5.19
2396 3166 3.219281 GACTCAAACCAAACAAGCCCTA 58.781 45.455 0.00 0.00 0.00 3.53
2397 3167 3.222603 ACTCAAACCAAACAAGCCCTAG 58.777 45.455 0.00 0.00 0.00 3.02
2418 3188 0.981183 TCCGCCAATCCAGTAACACT 59.019 50.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 7.545965 CGTGATAGTCTTCAAGGATAGTGTTTT 59.454 37.037 0.00 0.00 0.00 2.43
106 107 6.378710 TCGTGATAGTCTTCAAGGATAGTG 57.621 41.667 0.00 0.00 0.00 2.74
111 112 3.637229 GGGATCGTGATAGTCTTCAAGGA 59.363 47.826 0.00 0.00 0.00 3.36
145 146 6.875972 AACTGGAATGACCTACTGATAACT 57.124 37.500 0.00 0.00 39.86 2.24
229 230 0.955919 CCTCAAAAGACGCCCTCCAC 60.956 60.000 0.00 0.00 0.00 4.02
242 248 2.289444 GGACGGAGACAATGACCTCAAA 60.289 50.000 8.88 0.00 0.00 2.69
323 333 0.933796 GCAGTAAAGCTGGCGAGATC 59.066 55.000 0.00 0.00 45.14 2.75
334 344 5.856455 CCAATTGGTTAACGAAGCAGTAAAG 59.144 40.000 16.90 0.00 43.60 1.85
356 366 5.104569 ACAATTGAAAAAGAAAAGAGCCCCA 60.105 36.000 13.59 0.00 0.00 4.96
433 444 9.750125 GGAGTTTAAATGAATTTCAGAAGTTGT 57.250 29.630 5.21 0.00 0.00 3.32
692 709 8.470002 AGGATGCATTTATTTCCTACTTTCAAC 58.530 33.333 0.00 0.00 36.83 3.18
942 960 8.462016 CCGAAGATCAGAAGAACCAAAAATAAT 58.538 33.333 0.00 0.00 0.00 1.28
943 961 7.447238 ACCGAAGATCAGAAGAACCAAAAATAA 59.553 33.333 0.00 0.00 0.00 1.40
944 962 6.940298 ACCGAAGATCAGAAGAACCAAAAATA 59.060 34.615 0.00 0.00 0.00 1.40
945 963 5.770162 ACCGAAGATCAGAAGAACCAAAAAT 59.230 36.000 0.00 0.00 0.00 1.82
1204 1970 9.631452 ACAGATCAGAACACAATATATACATCG 57.369 33.333 0.00 0.00 0.00 3.84
1215 1981 8.450578 AAACAAGAATACAGATCAGAACACAA 57.549 30.769 0.00 0.00 0.00 3.33
1498 2266 3.221771 AGCACACCATAAAGACTTGCAA 58.778 40.909 0.00 0.00 0.00 4.08
1499 2267 2.862541 AGCACACCATAAAGACTTGCA 58.137 42.857 0.00 0.00 0.00 4.08
1500 2268 4.342352 GTAGCACACCATAAAGACTTGC 57.658 45.455 0.00 0.00 0.00 4.01
1521 2289 5.397142 TCTATCACCGATTCATCATGAGG 57.603 43.478 0.00 0.00 0.00 3.86
1688 2458 2.306512 ACCTTCATAACCGTTTGCCCTA 59.693 45.455 0.00 0.00 0.00 3.53
1796 2566 3.230976 GGTTTGATGGTCCAAGAACCTT 58.769 45.455 19.56 0.00 40.20 3.50
1817 2587 1.736645 CGTTCTGGCGGTAGTGGTG 60.737 63.158 0.00 0.00 0.00 4.17
1867 2637 2.680805 CGGCAGTAATGGACAAGGTCAT 60.681 50.000 0.00 0.00 33.68 3.06
1878 2648 3.865745 ACGAAGAATTCTCGGCAGTAATG 59.134 43.478 22.48 0.00 44.75 1.90
1884 2654 0.320334 TGCACGAAGAATTCTCGGCA 60.320 50.000 22.89 22.89 44.75 5.69
1928 2698 0.398318 GACTCAACAACCAGGGCTCT 59.602 55.000 0.00 0.00 0.00 4.09
1936 2706 6.864560 GTTTGTTAAACTGACTCAACAACC 57.135 37.500 0.00 0.00 39.78 3.77
1949 2719 3.743521 ACCGACCCCTAGTTTGTTAAAC 58.256 45.455 0.00 0.00 41.69 2.01
1963 2733 1.802337 GAAGGCAACCAAACCGACCC 61.802 60.000 0.00 0.00 37.17 4.46
1964 2734 1.658114 GAAGGCAACCAAACCGACC 59.342 57.895 0.00 0.00 37.17 4.79
1965 2735 0.822121 AGGAAGGCAACCAAACCGAC 60.822 55.000 3.09 0.00 37.17 4.79
1966 2736 0.821711 CAGGAAGGCAACCAAACCGA 60.822 55.000 3.09 0.00 37.17 4.69
1967 2737 1.659794 CAGGAAGGCAACCAAACCG 59.340 57.895 3.09 0.00 37.17 4.44
1968 2738 2.049435 CCAGGAAGGCAACCAAACC 58.951 57.895 3.09 0.00 37.17 3.27
1978 2748 1.856265 GCACAAGTTCGCCAGGAAGG 61.856 60.000 0.00 0.00 41.84 3.46
1979 2749 0.886490 AGCACAAGTTCGCCAGGAAG 60.886 55.000 0.00 0.00 34.69 3.46
1980 2750 0.465460 AAGCACAAGTTCGCCAGGAA 60.465 50.000 0.00 0.00 0.00 3.36
1981 2751 1.148273 AAGCACAAGTTCGCCAGGA 59.852 52.632 0.00 0.00 0.00 3.86
1982 2752 1.165907 TCAAGCACAAGTTCGCCAGG 61.166 55.000 0.00 0.00 0.00 4.45
1983 2753 0.040958 GTCAAGCACAAGTTCGCCAG 60.041 55.000 0.00 0.00 0.00 4.85
1984 2754 1.444119 GGTCAAGCACAAGTTCGCCA 61.444 55.000 0.00 0.00 0.00 5.69
1985 2755 1.282875 GGTCAAGCACAAGTTCGCC 59.717 57.895 0.00 0.00 0.00 5.54
1986 2756 0.317020 GTGGTCAAGCACAAGTTCGC 60.317 55.000 7.43 0.00 0.00 4.70
1987 2757 1.013596 TGTGGTCAAGCACAAGTTCG 58.986 50.000 12.27 0.00 0.00 3.95
1988 2758 3.179048 GTTTGTGGTCAAGCACAAGTTC 58.821 45.455 22.35 15.18 41.52 3.01
1989 2759 2.415357 CGTTTGTGGTCAAGCACAAGTT 60.415 45.455 22.35 0.00 41.52 2.66
1990 2760 1.132262 CGTTTGTGGTCAAGCACAAGT 59.868 47.619 22.35 0.00 41.52 3.16
1991 2761 1.132262 ACGTTTGTGGTCAAGCACAAG 59.868 47.619 22.35 16.35 41.52 3.16
1992 2762 1.135546 CACGTTTGTGGTCAAGCACAA 60.136 47.619 20.42 20.42 42.59 3.33
1993 2763 0.449786 CACGTTTGTGGTCAAGCACA 59.550 50.000 10.76 10.76 42.59 4.57
1994 2764 0.865639 GCACGTTTGTGGTCAAGCAC 60.866 55.000 5.41 5.41 46.51 4.40
1995 2765 1.431440 GCACGTTTGTGGTCAAGCA 59.569 52.632 0.00 0.00 46.51 3.91
1996 2766 1.299089 GGCACGTTTGTGGTCAAGC 60.299 57.895 0.00 0.00 46.51 4.01
1997 2767 0.029300 CAGGCACGTTTGTGGTCAAG 59.971 55.000 0.00 0.00 46.51 3.02
1998 2768 0.393132 TCAGGCACGTTTGTGGTCAA 60.393 50.000 0.00 0.00 46.51 3.18
1999 2769 0.393132 TTCAGGCACGTTTGTGGTCA 60.393 50.000 0.00 0.00 46.51 4.02
2000 2770 0.736053 TTTCAGGCACGTTTGTGGTC 59.264 50.000 0.00 0.00 46.51 4.02
2001 2771 0.454196 GTTTCAGGCACGTTTGTGGT 59.546 50.000 0.00 0.00 46.51 4.16
2002 2772 0.248866 GGTTTCAGGCACGTTTGTGG 60.249 55.000 0.00 0.00 46.51 4.17
2004 2774 0.738389 CAGGTTTCAGGCACGTTTGT 59.262 50.000 0.00 0.00 0.00 2.83
2005 2775 0.594796 GCAGGTTTCAGGCACGTTTG 60.595 55.000 0.00 0.00 0.00 2.93
2006 2776 1.733526 GCAGGTTTCAGGCACGTTT 59.266 52.632 0.00 0.00 0.00 3.60
2007 2777 2.193536 GGCAGGTTTCAGGCACGTT 61.194 57.895 0.00 0.00 0.00 3.99
2008 2778 2.594592 GGCAGGTTTCAGGCACGT 60.595 61.111 0.00 0.00 0.00 4.49
2009 2779 2.281761 AGGCAGGTTTCAGGCACG 60.282 61.111 0.00 0.00 0.00 5.34
2010 2780 2.270986 CCAGGCAGGTTTCAGGCAC 61.271 63.158 0.00 0.00 0.00 5.01
2011 2781 2.115910 CCAGGCAGGTTTCAGGCA 59.884 61.111 0.00 0.00 0.00 4.75
2012 2782 2.677875 CCCAGGCAGGTTTCAGGC 60.678 66.667 0.00 0.00 34.66 4.85
2013 2783 1.303643 GTCCCAGGCAGGTTTCAGG 60.304 63.158 0.00 0.00 34.66 3.86
2014 2784 0.111253 AAGTCCCAGGCAGGTTTCAG 59.889 55.000 0.00 0.00 34.66 3.02
2015 2785 0.178992 CAAGTCCCAGGCAGGTTTCA 60.179 55.000 0.00 0.00 34.66 2.69
2016 2786 0.178990 ACAAGTCCCAGGCAGGTTTC 60.179 55.000 0.00 0.00 34.66 2.78
2017 2787 0.261696 AACAAGTCCCAGGCAGGTTT 59.738 50.000 0.00 0.00 34.66 3.27
2018 2788 0.261696 AAACAAGTCCCAGGCAGGTT 59.738 50.000 0.00 0.00 34.66 3.50
2019 2789 0.468029 CAAACAAGTCCCAGGCAGGT 60.468 55.000 0.00 0.00 34.66 4.00
2020 2790 1.181098 CCAAACAAGTCCCAGGCAGG 61.181 60.000 0.00 0.00 37.03 4.85
2021 2791 0.178992 TCCAAACAAGTCCCAGGCAG 60.179 55.000 0.00 0.00 0.00 4.85
2022 2792 0.482446 ATCCAAACAAGTCCCAGGCA 59.518 50.000 0.00 0.00 0.00 4.75
2023 2793 0.890683 CATCCAAACAAGTCCCAGGC 59.109 55.000 0.00 0.00 0.00 4.85
2024 2794 1.203050 ACCATCCAAACAAGTCCCAGG 60.203 52.381 0.00 0.00 0.00 4.45
2025 2795 2.292828 ACCATCCAAACAAGTCCCAG 57.707 50.000 0.00 0.00 0.00 4.45
2026 2796 3.963129 GATACCATCCAAACAAGTCCCA 58.037 45.455 0.00 0.00 0.00 4.37
2039 2809 7.047891 TGTTGTCAAATACTCAGGATACCATC 58.952 38.462 0.00 0.00 37.17 3.51
2040 2810 6.957631 TGTTGTCAAATACTCAGGATACCAT 58.042 36.000 0.00 0.00 37.17 3.55
2041 2811 6.367374 TGTTGTCAAATACTCAGGATACCA 57.633 37.500 0.00 0.00 37.17 3.25
2042 2812 6.238484 GCATGTTGTCAAATACTCAGGATACC 60.238 42.308 0.00 0.00 37.17 2.73
2043 2813 6.238484 GGCATGTTGTCAAATACTCAGGATAC 60.238 42.308 0.00 0.00 0.00 2.24
2044 2814 5.822519 GGCATGTTGTCAAATACTCAGGATA 59.177 40.000 0.00 0.00 0.00 2.59
2045 2815 4.641989 GGCATGTTGTCAAATACTCAGGAT 59.358 41.667 0.00 0.00 0.00 3.24
2046 2816 4.009675 GGCATGTTGTCAAATACTCAGGA 58.990 43.478 0.00 0.00 0.00 3.86
2047 2817 4.012374 AGGCATGTTGTCAAATACTCAGG 58.988 43.478 0.00 0.00 0.00 3.86
2048 2818 4.696877 TCAGGCATGTTGTCAAATACTCAG 59.303 41.667 0.00 0.00 0.00 3.35
2049 2819 4.455533 GTCAGGCATGTTGTCAAATACTCA 59.544 41.667 0.00 0.00 0.00 3.41
2050 2820 4.142600 GGTCAGGCATGTTGTCAAATACTC 60.143 45.833 0.00 0.00 0.00 2.59
2051 2821 3.758554 GGTCAGGCATGTTGTCAAATACT 59.241 43.478 0.00 0.00 0.00 2.12
2052 2822 3.758554 AGGTCAGGCATGTTGTCAAATAC 59.241 43.478 0.00 0.00 0.00 1.89
2053 2823 3.758023 CAGGTCAGGCATGTTGTCAAATA 59.242 43.478 0.00 0.00 0.00 1.40
2054 2824 2.559668 CAGGTCAGGCATGTTGTCAAAT 59.440 45.455 0.00 0.00 0.00 2.32
2055 2825 1.955778 CAGGTCAGGCATGTTGTCAAA 59.044 47.619 0.00 0.00 0.00 2.69
2056 2826 1.142667 TCAGGTCAGGCATGTTGTCAA 59.857 47.619 0.00 0.00 0.00 3.18
2057 2827 0.764271 TCAGGTCAGGCATGTTGTCA 59.236 50.000 0.00 0.00 0.00 3.58
2058 2828 1.896220 TTCAGGTCAGGCATGTTGTC 58.104 50.000 0.00 0.00 0.00 3.18
2059 2829 2.363306 TTTCAGGTCAGGCATGTTGT 57.637 45.000 0.00 0.00 0.00 3.32
2060 2830 3.645884 CTTTTTCAGGTCAGGCATGTTG 58.354 45.455 0.00 0.00 0.00 3.33
2061 2831 2.036346 GCTTTTTCAGGTCAGGCATGTT 59.964 45.455 0.00 0.00 0.00 2.71
2062 2832 1.615392 GCTTTTTCAGGTCAGGCATGT 59.385 47.619 0.00 0.00 0.00 3.21
2063 2833 1.614903 TGCTTTTTCAGGTCAGGCATG 59.385 47.619 0.00 0.00 0.00 4.06
2064 2834 1.999648 TGCTTTTTCAGGTCAGGCAT 58.000 45.000 0.00 0.00 0.00 4.40
2065 2835 1.614903 CATGCTTTTTCAGGTCAGGCA 59.385 47.619 0.00 0.00 0.00 4.75
2066 2836 1.615392 ACATGCTTTTTCAGGTCAGGC 59.385 47.619 0.00 0.00 0.00 4.85
2067 2837 2.095567 CGACATGCTTTTTCAGGTCAGG 60.096 50.000 8.84 0.00 45.05 3.86
2068 2838 2.549754 ACGACATGCTTTTTCAGGTCAG 59.450 45.455 8.84 4.78 45.05 3.51
2069 2839 2.548057 GACGACATGCTTTTTCAGGTCA 59.452 45.455 8.84 0.00 45.05 4.02
2070 2840 2.548057 TGACGACATGCTTTTTCAGGTC 59.452 45.455 0.00 0.00 42.39 3.85
2071 2841 2.571212 TGACGACATGCTTTTTCAGGT 58.429 42.857 0.00 0.00 33.28 4.00
2072 2842 3.189080 TGATGACGACATGCTTTTTCAGG 59.811 43.478 4.80 0.00 36.82 3.86
2073 2843 4.408993 TGATGACGACATGCTTTTTCAG 57.591 40.909 4.80 0.00 36.82 3.02
2074 2844 5.375417 AATGATGACGACATGCTTTTTCA 57.625 34.783 4.80 0.00 36.82 2.69
2075 2845 5.453587 GCTAATGATGACGACATGCTTTTTC 59.546 40.000 4.80 0.00 36.82 2.29
2076 2846 5.335127 GCTAATGATGACGACATGCTTTTT 58.665 37.500 4.80 0.00 36.82 1.94
2077 2847 4.201950 GGCTAATGATGACGACATGCTTTT 60.202 41.667 4.80 0.00 36.82 2.27
2078 2848 3.313526 GGCTAATGATGACGACATGCTTT 59.686 43.478 4.80 4.84 36.82 3.51
2079 2849 2.874701 GGCTAATGATGACGACATGCTT 59.125 45.455 4.80 1.34 36.82 3.91
2080 2850 2.103771 AGGCTAATGATGACGACATGCT 59.896 45.455 4.80 0.00 36.82 3.79
2081 2851 2.222678 CAGGCTAATGATGACGACATGC 59.777 50.000 4.80 1.88 36.82 4.06
2082 2852 2.804527 CCAGGCTAATGATGACGACATG 59.195 50.000 4.80 0.00 36.82 3.21
2083 2853 2.224378 CCCAGGCTAATGATGACGACAT 60.224 50.000 0.00 0.00 39.67 3.06
2084 2854 1.138859 CCCAGGCTAATGATGACGACA 59.861 52.381 0.00 0.00 0.00 4.35
2085 2855 1.139058 ACCCAGGCTAATGATGACGAC 59.861 52.381 0.00 0.00 0.00 4.34
2086 2856 1.412710 GACCCAGGCTAATGATGACGA 59.587 52.381 0.00 0.00 0.00 4.20
2087 2857 1.138859 TGACCCAGGCTAATGATGACG 59.861 52.381 0.00 0.00 0.00 4.35
2088 2858 3.281727 TTGACCCAGGCTAATGATGAC 57.718 47.619 0.00 0.00 0.00 3.06
2089 2859 3.181440 GGATTGACCCAGGCTAATGATGA 60.181 47.826 0.00 0.00 0.00 2.92
2090 2860 3.152341 GGATTGACCCAGGCTAATGATG 58.848 50.000 0.00 0.00 0.00 3.07
2091 2861 2.785269 TGGATTGACCCAGGCTAATGAT 59.215 45.455 0.00 0.00 38.00 2.45
2092 2862 2.204463 TGGATTGACCCAGGCTAATGA 58.796 47.619 0.00 0.00 38.00 2.57
2093 2863 2.734755 TGGATTGACCCAGGCTAATG 57.265 50.000 0.00 0.00 38.00 1.90
2101 2871 4.424711 GGCGCCTGGATTGACCCA 62.425 66.667 22.15 0.00 38.00 4.51
2102 2872 4.424711 TGGCGCCTGGATTGACCC 62.425 66.667 29.70 0.00 38.00 4.46
2103 2873 3.134127 GTGGCGCCTGGATTGACC 61.134 66.667 29.70 0.00 39.54 4.02
2104 2874 3.134127 GGTGGCGCCTGGATTGAC 61.134 66.667 29.70 15.38 0.00 3.18
2105 2875 2.497792 AATGGTGGCGCCTGGATTGA 62.498 55.000 29.70 1.01 38.35 2.57
2106 2876 0.751277 TAATGGTGGCGCCTGGATTG 60.751 55.000 29.70 0.00 38.35 2.67
2107 2877 0.466189 CTAATGGTGGCGCCTGGATT 60.466 55.000 29.70 22.30 38.35 3.01
2108 2878 1.149174 CTAATGGTGGCGCCTGGAT 59.851 57.895 29.70 13.34 38.35 3.41
2109 2879 2.589540 CTAATGGTGGCGCCTGGA 59.410 61.111 29.70 11.38 38.35 3.86
2110 2880 3.211963 GCTAATGGTGGCGCCTGG 61.212 66.667 29.70 10.07 38.35 4.45
2111 2881 3.211963 GGCTAATGGTGGCGCCTG 61.212 66.667 29.70 9.67 39.42 4.85
2113 2883 3.211963 CAGGCTAATGGTGGCGCC 61.212 66.667 22.73 22.73 42.79 6.53
2114 2884 2.124736 TCAGGCTAATGGTGGCGC 60.125 61.111 0.00 0.00 35.01 6.53
2115 2885 1.524621 CCTCAGGCTAATGGTGGCG 60.525 63.158 0.00 0.00 35.01 5.69
2116 2886 1.825622 GCCTCAGGCTAATGGTGGC 60.826 63.158 9.09 0.66 46.69 5.01
2117 2887 4.567318 GCCTCAGGCTAATGGTGG 57.433 61.111 9.09 0.00 46.69 4.61
2133 2903 2.361104 TGAAATCGGTGGCCTGGC 60.361 61.111 11.05 11.05 0.00 4.85
2134 2904 0.893270 TTGTGAAATCGGTGGCCTGG 60.893 55.000 3.32 0.00 0.00 4.45
2135 2905 0.523072 CTTGTGAAATCGGTGGCCTG 59.477 55.000 3.32 0.00 0.00 4.85
2136 2906 1.244019 GCTTGTGAAATCGGTGGCCT 61.244 55.000 3.32 0.00 0.00 5.19
2137 2907 1.212751 GCTTGTGAAATCGGTGGCC 59.787 57.895 0.00 0.00 0.00 5.36
2138 2908 1.212751 GGCTTGTGAAATCGGTGGC 59.787 57.895 0.00 0.00 0.00 5.01
2139 2909 0.523072 CAGGCTTGTGAAATCGGTGG 59.477 55.000 0.00 0.00 0.00 4.61
2140 2910 0.523072 CCAGGCTTGTGAAATCGGTG 59.477 55.000 0.00 0.00 0.00 4.94
2141 2911 0.110486 ACCAGGCTTGTGAAATCGGT 59.890 50.000 0.00 0.00 0.00 4.69
2142 2912 0.523072 CACCAGGCTTGTGAAATCGG 59.477 55.000 13.13 0.00 35.74 4.18
2143 2913 0.523072 CCACCAGGCTTGTGAAATCG 59.477 55.000 19.41 0.00 35.74 3.34
2144 2914 0.890683 CCCACCAGGCTTGTGAAATC 59.109 55.000 19.41 0.00 35.74 2.17
2145 2915 0.188342 ACCCACCAGGCTTGTGAAAT 59.812 50.000 19.41 2.35 40.58 2.17
2146 2916 0.754957 CACCCACCAGGCTTGTGAAA 60.755 55.000 19.41 0.00 40.58 2.69
2147 2917 1.152777 CACCCACCAGGCTTGTGAA 60.153 57.895 19.41 0.00 40.58 3.18
2148 2918 2.515398 CACCCACCAGGCTTGTGA 59.485 61.111 19.41 0.00 40.58 3.58
2149 2919 3.297620 GCACCCACCAGGCTTGTG 61.298 66.667 11.57 11.57 40.58 3.33
2150 2920 4.603535 GGCACCCACCAGGCTTGT 62.604 66.667 0.00 0.00 40.58 3.16
2151 2921 4.290622 AGGCACCCACCAGGCTTG 62.291 66.667 0.00 0.00 40.58 4.01
2152 2922 4.290622 CAGGCACCCACCAGGCTT 62.291 66.667 0.00 0.00 40.58 4.35
2156 2926 3.892104 ATTGCCAGGCACCCACCAG 62.892 63.158 15.89 0.00 38.71 4.00
2157 2927 3.913445 ATTGCCAGGCACCCACCA 61.913 61.111 15.89 0.00 38.71 4.17
2158 2928 3.384532 CATTGCCAGGCACCCACC 61.385 66.667 15.89 0.00 38.71 4.61
2159 2929 3.384532 CCATTGCCAGGCACCCAC 61.385 66.667 15.89 0.00 38.71 4.61
2160 2930 4.700448 CCCATTGCCAGGCACCCA 62.700 66.667 15.89 0.00 38.71 4.51
2161 2931 4.702274 ACCCATTGCCAGGCACCC 62.702 66.667 15.89 0.00 38.71 4.61
2162 2932 2.604382 AACCCATTGCCAGGCACC 60.604 61.111 15.89 0.00 38.71 5.01
2163 2933 2.658422 CAACCCATTGCCAGGCAC 59.342 61.111 15.89 0.00 38.71 5.01
2164 2934 2.604079 CCAACCCATTGCCAGGCA 60.604 61.111 11.22 11.22 36.47 4.75
2165 2935 2.604382 ACCAACCCATTGCCAGGC 60.604 61.111 3.66 3.66 34.17 4.85
2166 2936 1.120795 AACACCAACCCATTGCCAGG 61.121 55.000 0.00 0.00 34.17 4.45
2167 2937 1.626686 TAACACCAACCCATTGCCAG 58.373 50.000 0.00 0.00 34.17 4.85
2168 2938 2.088104 TTAACACCAACCCATTGCCA 57.912 45.000 0.00 0.00 34.17 4.92
2169 2939 3.477210 TTTTAACACCAACCCATTGCC 57.523 42.857 0.00 0.00 34.17 4.52
2170 2940 6.876257 TGAATATTTTAACACCAACCCATTGC 59.124 34.615 0.00 0.00 34.17 3.56
2171 2941 7.064490 GCTGAATATTTTAACACCAACCCATTG 59.936 37.037 0.00 0.00 35.40 2.82
2172 2942 7.038373 AGCTGAATATTTTAACACCAACCCATT 60.038 33.333 0.00 0.00 0.00 3.16
2173 2943 6.440328 AGCTGAATATTTTAACACCAACCCAT 59.560 34.615 0.00 0.00 0.00 4.00
2174 2944 5.777732 AGCTGAATATTTTAACACCAACCCA 59.222 36.000 0.00 0.00 0.00 4.51
2175 2945 6.099341 CAGCTGAATATTTTAACACCAACCC 58.901 40.000 8.42 0.00 0.00 4.11
2176 2946 6.099341 CCAGCTGAATATTTTAACACCAACC 58.901 40.000 17.39 0.00 0.00 3.77
2177 2947 6.099341 CCCAGCTGAATATTTTAACACCAAC 58.901 40.000 17.39 0.00 0.00 3.77
2178 2948 5.337169 GCCCAGCTGAATATTTTAACACCAA 60.337 40.000 17.39 0.00 0.00 3.67
2179 2949 4.159506 GCCCAGCTGAATATTTTAACACCA 59.840 41.667 17.39 0.00 0.00 4.17
2180 2950 4.441495 GGCCCAGCTGAATATTTTAACACC 60.441 45.833 17.39 0.00 0.00 4.16
2181 2951 4.159506 TGGCCCAGCTGAATATTTTAACAC 59.840 41.667 17.39 0.00 0.00 3.32
2182 2952 4.348486 TGGCCCAGCTGAATATTTTAACA 58.652 39.130 17.39 0.00 0.00 2.41
2183 2953 4.402474 ACTGGCCCAGCTGAATATTTTAAC 59.598 41.667 17.39 0.00 34.37 2.01
2184 2954 4.402155 CACTGGCCCAGCTGAATATTTTAA 59.598 41.667 17.39 0.00 34.37 1.52
2185 2955 3.953612 CACTGGCCCAGCTGAATATTTTA 59.046 43.478 17.39 0.00 34.37 1.52
2186 2956 2.762327 CACTGGCCCAGCTGAATATTTT 59.238 45.455 17.39 0.00 34.37 1.82
2187 2957 2.025037 TCACTGGCCCAGCTGAATATTT 60.025 45.455 17.39 0.00 34.37 1.40
2188 2958 1.565759 TCACTGGCCCAGCTGAATATT 59.434 47.619 17.39 0.00 34.37 1.28
2189 2959 1.142465 CTCACTGGCCCAGCTGAATAT 59.858 52.381 17.39 0.00 34.37 1.28
2190 2960 0.543277 CTCACTGGCCCAGCTGAATA 59.457 55.000 17.39 0.00 34.37 1.75
2191 2961 1.302285 CTCACTGGCCCAGCTGAAT 59.698 57.895 17.39 0.00 34.37 2.57
2192 2962 2.752358 CTCACTGGCCCAGCTGAA 59.248 61.111 17.39 0.00 34.37 3.02
2193 2963 4.025858 GCTCACTGGCCCAGCTGA 62.026 66.667 17.39 12.61 34.37 4.26
2194 2964 3.972971 GAGCTCACTGGCCCAGCTG 62.973 68.421 11.63 6.78 43.72 4.24
2195 2965 3.715097 GAGCTCACTGGCCCAGCT 61.715 66.667 11.63 13.80 46.42 4.24
2196 2966 4.792804 GGAGCTCACTGGCCCAGC 62.793 72.222 17.19 2.18 34.37 4.85
2197 2967 3.324930 TGGAGCTCACTGGCCCAG 61.325 66.667 17.19 9.83 37.52 4.45
2198 2968 3.640407 GTGGAGCTCACTGGCCCA 61.640 66.667 17.19 0.00 42.86 5.36
2199 2969 3.618780 CTGTGGAGCTCACTGGCCC 62.619 68.421 17.19 0.00 46.20 5.80
2200 2970 2.046507 CTGTGGAGCTCACTGGCC 60.047 66.667 17.19 0.00 46.20 5.36
2201 2971 2.745492 GCTGTGGAGCTCACTGGC 60.745 66.667 17.19 14.81 46.20 4.85
2209 2979 0.103208 AGTACGCATAGCTGTGGAGC 59.897 55.000 12.79 0.00 46.64 4.70
2210 2980 1.135139 ACAGTACGCATAGCTGTGGAG 59.865 52.381 12.79 0.00 41.33 3.86
2211 2981 1.182667 ACAGTACGCATAGCTGTGGA 58.817 50.000 12.79 0.00 41.33 4.02
2212 2982 1.660607 CAACAGTACGCATAGCTGTGG 59.339 52.381 12.79 5.11 41.94 4.17
2213 2983 1.660607 CCAACAGTACGCATAGCTGTG 59.339 52.381 6.03 6.03 41.94 3.66
2214 2984 1.275291 ACCAACAGTACGCATAGCTGT 59.725 47.619 0.00 0.00 44.31 4.40
2215 2985 1.927174 GACCAACAGTACGCATAGCTG 59.073 52.381 0.00 0.00 36.41 4.24
2216 2986 1.134788 GGACCAACAGTACGCATAGCT 60.135 52.381 0.00 0.00 0.00 3.32
2217 2987 1.134788 AGGACCAACAGTACGCATAGC 60.135 52.381 0.00 0.00 32.79 2.97
2218 2988 2.961526 AGGACCAACAGTACGCATAG 57.038 50.000 0.00 0.00 32.79 2.23
2219 2989 6.468333 TTTATAGGACCAACAGTACGCATA 57.532 37.500 0.00 0.00 32.79 3.14
2220 2990 5.347620 TTTATAGGACCAACAGTACGCAT 57.652 39.130 0.00 0.00 32.79 4.73
2221 2991 4.804868 TTTATAGGACCAACAGTACGCA 57.195 40.909 0.00 0.00 32.79 5.24
2222 2992 7.958053 ATATTTTATAGGACCAACAGTACGC 57.042 36.000 0.00 0.00 32.79 4.42
2223 2993 9.760077 AGAATATTTTATAGGACCAACAGTACG 57.240 33.333 0.00 0.00 32.79 3.67
2240 3010 8.200120 GCCTGGAAAAGCATTAGAGAATATTTT 58.800 33.333 0.00 0.00 31.05 1.82
2241 3011 7.201947 GGCCTGGAAAAGCATTAGAGAATATTT 60.202 37.037 0.00 0.00 0.00 1.40
2242 3012 6.266330 GGCCTGGAAAAGCATTAGAGAATATT 59.734 38.462 0.00 0.00 0.00 1.28
2243 3013 5.772169 GGCCTGGAAAAGCATTAGAGAATAT 59.228 40.000 0.00 0.00 0.00 1.28
2244 3014 5.133221 GGCCTGGAAAAGCATTAGAGAATA 58.867 41.667 0.00 0.00 0.00 1.75
2245 3015 3.956848 GGCCTGGAAAAGCATTAGAGAAT 59.043 43.478 0.00 0.00 0.00 2.40
2246 3016 3.245229 TGGCCTGGAAAAGCATTAGAGAA 60.245 43.478 3.32 0.00 0.00 2.87
2247 3017 2.308570 TGGCCTGGAAAAGCATTAGAGA 59.691 45.455 3.32 0.00 0.00 3.10
2248 3018 2.686915 CTGGCCTGGAAAAGCATTAGAG 59.313 50.000 3.32 0.00 0.00 2.43
2249 3019 2.621407 CCTGGCCTGGAAAAGCATTAGA 60.621 50.000 23.89 0.00 0.00 2.10
2250 3020 1.753073 CCTGGCCTGGAAAAGCATTAG 59.247 52.381 23.89 0.00 0.00 1.73
2251 3021 1.619432 CCCTGGCCTGGAAAAGCATTA 60.619 52.381 29.21 0.00 0.00 1.90
2252 3022 0.906282 CCCTGGCCTGGAAAAGCATT 60.906 55.000 29.21 0.00 0.00 3.56
2253 3023 1.305549 CCCTGGCCTGGAAAAGCAT 60.306 57.895 29.21 0.00 0.00 3.79
2254 3024 2.118076 CCCTGGCCTGGAAAAGCA 59.882 61.111 29.21 0.00 0.00 3.91
2255 3025 3.385384 GCCCTGGCCTGGAAAAGC 61.385 66.667 29.21 19.42 34.56 3.51
2256 3026 1.305549 ATGCCCTGGCCTGGAAAAG 60.306 57.895 29.21 13.69 41.09 2.27
2257 3027 1.305213 GATGCCCTGGCCTGGAAAA 60.305 57.895 29.21 14.35 41.09 2.29
2258 3028 2.091640 TTGATGCCCTGGCCTGGAAA 62.092 55.000 29.21 16.82 41.09 3.13
2259 3029 2.546643 TTGATGCCCTGGCCTGGAA 61.547 57.895 29.21 17.17 41.09 3.53
2260 3030 2.940467 TTGATGCCCTGGCCTGGA 60.940 61.111 29.21 11.42 41.09 3.86
2261 3031 2.757099 GTTGATGCCCTGGCCTGG 60.757 66.667 21.51 21.51 41.09 4.45
2262 3032 2.757099 GGTTGATGCCCTGGCCTG 60.757 66.667 3.32 2.54 41.09 4.85
2263 3033 2.384933 TTTGGTTGATGCCCTGGCCT 62.385 55.000 3.32 0.00 41.09 5.19
2264 3034 1.912763 TTTGGTTGATGCCCTGGCC 60.913 57.895 5.57 0.00 41.09 5.36
2265 3035 1.293179 GTTTGGTTGATGCCCTGGC 59.707 57.895 0.00 0.00 42.35 4.85
2266 3036 1.178534 ACGTTTGGTTGATGCCCTGG 61.179 55.000 0.00 0.00 0.00 4.45
2267 3037 0.673437 AACGTTTGGTTGATGCCCTG 59.327 50.000 0.00 0.00 37.50 4.45
2268 3038 2.279935 TAACGTTTGGTTGATGCCCT 57.720 45.000 5.91 0.00 39.75 5.19
2269 3039 3.192633 AGAATAACGTTTGGTTGATGCCC 59.807 43.478 5.91 0.00 39.75 5.36
2270 3040 4.412207 GAGAATAACGTTTGGTTGATGCC 58.588 43.478 5.91 0.00 39.75 4.40
2271 3041 4.088648 CGAGAATAACGTTTGGTTGATGC 58.911 43.478 5.91 0.00 39.75 3.91
2272 3042 5.277601 ACGAGAATAACGTTTGGTTGATG 57.722 39.130 5.91 0.00 41.18 3.07
2273 3043 5.579511 CCTACGAGAATAACGTTTGGTTGAT 59.420 40.000 5.91 0.00 43.62 2.57
2274 3044 4.925054 CCTACGAGAATAACGTTTGGTTGA 59.075 41.667 5.91 0.00 43.62 3.18
2275 3045 4.435121 GCCTACGAGAATAACGTTTGGTTG 60.435 45.833 5.91 0.00 43.62 3.77
2276 3046 3.681417 GCCTACGAGAATAACGTTTGGTT 59.319 43.478 5.91 0.00 43.62 3.67
2277 3047 3.256558 GCCTACGAGAATAACGTTTGGT 58.743 45.455 5.91 0.00 43.62 3.67
2278 3048 2.606272 GGCCTACGAGAATAACGTTTGG 59.394 50.000 5.91 0.00 43.62 3.28
2279 3049 3.255725 TGGCCTACGAGAATAACGTTTG 58.744 45.455 5.91 0.00 43.62 2.93
2280 3050 3.518590 CTGGCCTACGAGAATAACGTTT 58.481 45.455 5.91 0.00 43.62 3.60
2281 3051 2.737679 GCTGGCCTACGAGAATAACGTT 60.738 50.000 5.88 5.88 43.62 3.99
2282 3052 1.202382 GCTGGCCTACGAGAATAACGT 60.202 52.381 3.32 0.00 45.75 3.99
2283 3053 1.488527 GCTGGCCTACGAGAATAACG 58.511 55.000 3.32 0.00 0.00 3.18
2284 3054 1.413077 AGGCTGGCCTACGAGAATAAC 59.587 52.381 12.94 0.00 46.14 1.89
2285 3055 1.412710 CAGGCTGGCCTACGAGAATAA 59.587 52.381 14.19 0.00 46.28 1.40
2286 3056 1.040646 CAGGCTGGCCTACGAGAATA 58.959 55.000 14.19 0.00 46.28 1.75
2287 3057 0.687757 TCAGGCTGGCCTACGAGAAT 60.688 55.000 15.73 0.00 46.28 2.40
2288 3058 1.304962 TCAGGCTGGCCTACGAGAA 60.305 57.895 15.73 0.00 46.28 2.87
2289 3059 2.052690 GTCAGGCTGGCCTACGAGA 61.053 63.158 15.73 4.62 46.28 4.04
2290 3060 2.496817 GTCAGGCTGGCCTACGAG 59.503 66.667 15.73 2.15 46.28 4.18
2291 3061 3.075005 GGTCAGGCTGGCCTACGA 61.075 66.667 30.44 5.72 46.28 3.43
2292 3062 3.376935 CTGGTCAGGCTGGCCTACG 62.377 68.421 35.74 21.20 44.07 3.51
2293 3063 2.586792 CTGGTCAGGCTGGCCTAC 59.413 66.667 35.74 16.82 44.07 3.18
2294 3064 2.688666 CCTGGTCAGGCTGGCCTA 60.689 66.667 35.74 21.94 44.07 3.93
2303 3073 2.086869 CTGTGGTTTATGCCTGGTCAG 58.913 52.381 0.00 0.00 0.00 3.51
2304 3074 1.271871 CCTGTGGTTTATGCCTGGTCA 60.272 52.381 0.00 0.00 0.00 4.02
2305 3075 1.463674 CCTGTGGTTTATGCCTGGTC 58.536 55.000 0.00 0.00 0.00 4.02
2306 3076 0.611896 GCCTGTGGTTTATGCCTGGT 60.612 55.000 0.00 0.00 0.00 4.00
2307 3077 1.656818 CGCCTGTGGTTTATGCCTGG 61.657 60.000 0.00 0.00 0.00 4.45
2308 3078 1.802636 CGCCTGTGGTTTATGCCTG 59.197 57.895 0.00 0.00 0.00 4.85
2309 3079 2.046285 GCGCCTGTGGTTTATGCCT 61.046 57.895 0.00 0.00 0.00 4.75
2310 3080 1.993369 GAGCGCCTGTGGTTTATGCC 61.993 60.000 2.29 0.00 0.00 4.40
2311 3081 1.026718 AGAGCGCCTGTGGTTTATGC 61.027 55.000 2.29 0.00 0.00 3.14
2312 3082 1.009829 GAGAGCGCCTGTGGTTTATG 58.990 55.000 2.29 0.00 0.00 1.90
2313 3083 0.613260 TGAGAGCGCCTGTGGTTTAT 59.387 50.000 2.29 0.00 0.00 1.40
2314 3084 0.037326 CTGAGAGCGCCTGTGGTTTA 60.037 55.000 2.29 0.00 0.00 2.01
2315 3085 1.302033 CTGAGAGCGCCTGTGGTTT 60.302 57.895 2.29 0.00 0.00 3.27
2316 3086 2.345244 CTGAGAGCGCCTGTGGTT 59.655 61.111 2.29 0.00 0.00 3.67
2317 3087 3.699894 CCTGAGAGCGCCTGTGGT 61.700 66.667 2.29 0.00 0.00 4.16
2319 3089 4.079850 AGCCTGAGAGCGCCTGTG 62.080 66.667 2.29 0.00 38.01 3.66
2320 3090 3.768922 GAGCCTGAGAGCGCCTGT 61.769 66.667 2.29 0.00 38.01 4.00
2321 3091 4.869440 CGAGCCTGAGAGCGCCTG 62.869 72.222 2.29 0.00 38.01 4.85
2323 3093 4.443266 AACGAGCCTGAGAGCGCC 62.443 66.667 2.29 0.00 38.01 6.53
2324 3094 2.883253 GAACGAGCCTGAGAGCGC 60.883 66.667 0.00 0.00 38.01 5.92
2325 3095 2.202676 GGAACGAGCCTGAGAGCG 60.203 66.667 0.00 0.00 38.01 5.03
2338 3108 2.358193 AAAAAGCCAACGCCCGGAAC 62.358 55.000 0.73 0.00 34.57 3.62
2339 3109 2.128507 AAAAAGCCAACGCCCGGAA 61.129 52.632 0.73 0.00 34.57 4.30
2340 3110 2.519780 AAAAAGCCAACGCCCGGA 60.520 55.556 0.73 0.00 34.57 5.14
2354 3124 2.915137 GCCGGGGTGCCTGAAAAA 60.915 61.111 2.18 0.00 29.82 1.94
2368 3138 3.835790 TTGGTTTGAGTCCCGGCCG 62.836 63.158 21.04 21.04 0.00 6.13
2369 3139 1.529713 TTTGGTTTGAGTCCCGGCC 60.530 57.895 0.00 0.00 0.00 6.13
2370 3140 1.104577 TGTTTGGTTTGAGTCCCGGC 61.105 55.000 0.00 0.00 0.00 6.13
2371 3141 1.336755 CTTGTTTGGTTTGAGTCCCGG 59.663 52.381 0.00 0.00 0.00 5.73
2372 3142 1.269051 GCTTGTTTGGTTTGAGTCCCG 60.269 52.381 0.00 0.00 0.00 5.14
2373 3143 1.068588 GGCTTGTTTGGTTTGAGTCCC 59.931 52.381 0.00 0.00 0.00 4.46
2374 3144 1.068588 GGGCTTGTTTGGTTTGAGTCC 59.931 52.381 0.00 0.00 0.00 3.85
2375 3145 2.031870 AGGGCTTGTTTGGTTTGAGTC 58.968 47.619 0.00 0.00 0.00 3.36
2376 3146 2.159179 AGGGCTTGTTTGGTTTGAGT 57.841 45.000 0.00 0.00 0.00 3.41
2377 3147 3.486383 TCTAGGGCTTGTTTGGTTTGAG 58.514 45.455 0.00 0.00 0.00 3.02
2378 3148 3.586470 TCTAGGGCTTGTTTGGTTTGA 57.414 42.857 0.00 0.00 0.00 2.69
2379 3149 3.193479 GGATCTAGGGCTTGTTTGGTTTG 59.807 47.826 0.00 0.00 0.00 2.93
2380 3150 3.431415 GGATCTAGGGCTTGTTTGGTTT 58.569 45.455 0.00 0.00 0.00 3.27
2381 3151 2.618045 CGGATCTAGGGCTTGTTTGGTT 60.618 50.000 0.00 0.00 0.00 3.67
2382 3152 1.065418 CGGATCTAGGGCTTGTTTGGT 60.065 52.381 0.00 0.00 0.00 3.67
2383 3153 1.668419 CGGATCTAGGGCTTGTTTGG 58.332 55.000 0.00 0.00 0.00 3.28
2384 3154 1.017387 GCGGATCTAGGGCTTGTTTG 58.983 55.000 0.00 0.00 0.00 2.93
2385 3155 0.107165 GGCGGATCTAGGGCTTGTTT 60.107 55.000 0.00 0.00 0.00 2.83
2386 3156 1.271840 TGGCGGATCTAGGGCTTGTT 61.272 55.000 0.00 0.00 0.00 2.83
2387 3157 1.271840 TTGGCGGATCTAGGGCTTGT 61.272 55.000 0.00 0.00 0.00 3.16
2388 3158 0.109342 ATTGGCGGATCTAGGGCTTG 59.891 55.000 0.00 0.00 0.00 4.01
2389 3159 0.398318 GATTGGCGGATCTAGGGCTT 59.602 55.000 0.00 0.00 0.00 4.35
2390 3160 1.484444 GGATTGGCGGATCTAGGGCT 61.484 60.000 0.00 0.00 0.00 5.19
2391 3161 1.003233 GGATTGGCGGATCTAGGGC 60.003 63.158 0.00 0.00 0.00 5.19
2392 3162 0.322975 CTGGATTGGCGGATCTAGGG 59.677 60.000 6.26 0.00 32.71 3.53
2393 3163 1.051812 ACTGGATTGGCGGATCTAGG 58.948 55.000 15.11 4.04 38.52 3.02
2394 3164 3.069586 TGTTACTGGATTGGCGGATCTAG 59.930 47.826 10.93 10.93 39.66 2.43
2395 3165 3.035363 TGTTACTGGATTGGCGGATCTA 58.965 45.455 0.00 0.00 0.00 1.98
2396 3166 1.837439 TGTTACTGGATTGGCGGATCT 59.163 47.619 0.00 0.00 0.00 2.75
2397 3167 1.940613 GTGTTACTGGATTGGCGGATC 59.059 52.381 0.00 0.00 0.00 3.36
2418 3188 6.350194 GCATATCCTATATGTGAAGGTCGACA 60.350 42.308 18.91 0.00 34.30 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.