Multiple sequence alignment - TraesCS5B01G473100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G473100 chr5B 100.000 2545 0 0 1 2545 647388319 647385775 0.000000e+00 4700.0
1 TraesCS5B01G473100 chr5B 83.333 162 21 6 28 185 621396673 621396514 7.340000e-31 145.0
2 TraesCS5B01G473100 chr5D 94.407 1198 40 10 696 1889 514924388 514923214 0.000000e+00 1816.0
3 TraesCS5B01G473100 chr5D 97.238 362 8 2 1889 2248 514923169 514922808 1.670000e-171 612.0
4 TraesCS5B01G473100 chr5D 81.408 355 42 10 206 546 514924715 514924371 4.170000e-68 268.0
5 TraesCS5B01G473100 chr5D 84.375 160 19 3 29 182 563965180 563965339 4.390000e-33 152.0
6 TraesCS5B01G473100 chr5D 95.522 67 3 0 2479 2545 514922813 514922747 9.630000e-20 108.0
7 TraesCS5B01G473100 chr5A 89.974 1137 79 19 696 1818 642919676 642918561 0.000000e+00 1435.0
8 TraesCS5B01G473100 chr5A 100.000 30 0 0 1 30 642920062 642920033 3.540000e-04 56.5
9 TraesCS5B01G473100 chr6D 89.267 764 60 15 808 1560 16307432 16306680 0.000000e+00 937.0
10 TraesCS5B01G473100 chr6D 86.337 849 77 22 733 1560 16523452 16522622 0.000000e+00 889.0
11 TraesCS5B01G473100 chr6D 83.762 973 100 37 735 1685 16529769 16528833 0.000000e+00 869.0
12 TraesCS5B01G473100 chr6D 85.497 855 85 22 723 1562 16510497 16511327 0.000000e+00 856.0
13 TraesCS5B01G473100 chr6D 85.935 711 70 18 853 1545 24001426 24002124 0.000000e+00 732.0
14 TraesCS5B01G473100 chr6D 87.795 254 25 5 2233 2482 81014670 81014419 2.480000e-75 292.0
15 TraesCS5B01G473100 chr6D 88.477 243 27 1 2244 2485 446210180 446210422 2.480000e-75 292.0
16 TraesCS5B01G473100 chr6B 87.013 847 72 24 733 1560 28980500 28979673 0.000000e+00 920.0
17 TraesCS5B01G473100 chr6B 87.223 767 62 25 808 1562 28256814 28256072 0.000000e+00 841.0
18 TraesCS5B01G473100 chr6B 92.523 107 8 0 77 183 314646968 314647074 1.220000e-33 154.0
19 TraesCS5B01G473100 chr6B 89.744 117 10 2 76 190 561149924 561149808 5.670000e-32 148.0
20 TraesCS5B01G473100 chr1B 83.976 1011 95 39 733 1717 587472620 587473589 0.000000e+00 907.0
21 TraesCS5B01G473100 chr6A 88.062 779 54 25 802 1562 16593984 16593227 0.000000e+00 887.0
22 TraesCS5B01G473100 chr3D 89.627 241 24 1 2244 2483 304534561 304534801 3.180000e-79 305.0
23 TraesCS5B01G473100 chr3D 88.142 253 28 2 2236 2487 439774393 439774644 1.480000e-77 300.0
24 TraesCS5B01G473100 chr3D 88.306 248 28 1 2235 2481 209677479 209677726 1.910000e-76 296.0
25 TraesCS5B01G473100 chr3D 88.259 247 26 3 2244 2488 602938487 602938242 2.480000e-75 292.0
26 TraesCS5B01G473100 chr3D 92.920 113 7 1 77 188 125786849 125786961 2.030000e-36 163.0
27 TraesCS5B01G473100 chr3D 92.035 113 8 1 77 188 125779342 125779454 9.430000e-35 158.0
28 TraesCS5B01G473100 chr7D 89.583 240 24 1 2243 2481 195476255 195476494 1.140000e-78 303.0
29 TraesCS5B01G473100 chr7D 82.468 154 24 3 29 182 556720332 556720482 5.710000e-27 132.0
30 TraesCS5B01G473100 chr2A 89.121 239 22 4 2244 2481 9107187 9106952 6.890000e-76 294.0
31 TraesCS5B01G473100 chr4B 88.477 243 26 2 2241 2482 468241494 468241253 2.480000e-75 292.0
32 TraesCS5B01G473100 chr3A 84.568 162 18 4 29 183 130848281 130848120 1.220000e-33 154.0
33 TraesCS5B01G473100 chr2D 83.439 157 24 2 28 184 616431600 616431446 7.340000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G473100 chr5B 647385775 647388319 2544 True 4700.00 4700 100.00000 1 2545 1 chr5B.!!$R2 2544
1 TraesCS5B01G473100 chr5D 514922747 514924715 1968 True 701.00 1816 92.14375 206 2545 4 chr5D.!!$R1 2339
2 TraesCS5B01G473100 chr5A 642918561 642920062 1501 True 745.75 1435 94.98700 1 1818 2 chr5A.!!$R1 1817
3 TraesCS5B01G473100 chr6D 16306680 16307432 752 True 937.00 937 89.26700 808 1560 1 chr6D.!!$R1 752
4 TraesCS5B01G473100 chr6D 16522622 16523452 830 True 889.00 889 86.33700 733 1560 1 chr6D.!!$R2 827
5 TraesCS5B01G473100 chr6D 16528833 16529769 936 True 869.00 869 83.76200 735 1685 1 chr6D.!!$R3 950
6 TraesCS5B01G473100 chr6D 16510497 16511327 830 False 856.00 856 85.49700 723 1562 1 chr6D.!!$F1 839
7 TraesCS5B01G473100 chr6D 24001426 24002124 698 False 732.00 732 85.93500 853 1545 1 chr6D.!!$F2 692
8 TraesCS5B01G473100 chr6B 28979673 28980500 827 True 920.00 920 87.01300 733 1560 1 chr6B.!!$R2 827
9 TraesCS5B01G473100 chr6B 28256072 28256814 742 True 841.00 841 87.22300 808 1562 1 chr6B.!!$R1 754
10 TraesCS5B01G473100 chr1B 587472620 587473589 969 False 907.00 907 83.97600 733 1717 1 chr1B.!!$F1 984
11 TraesCS5B01G473100 chr6A 16593227 16593984 757 True 887.00 887 88.06200 802 1562 1 chr6A.!!$R1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 678 0.038599 ATGGGCTGTCAGCAACATCA 59.961 50.0 25.68 14.79 44.75 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1704 0.693622 TACAAGACCCAATCCCGCAA 59.306 50.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.263168 AGCAAGTAAAATATGCTCCCATGTAC 59.737 38.462 0.00 0.00 46.98 2.90
31 32 6.263168 GCAAGTAAAATATGCTCCCATGTACT 59.737 38.462 0.00 0.00 37.12 2.73
32 33 7.520614 GCAAGTAAAATATGCTCCCATGTACTC 60.521 40.741 0.00 0.00 37.12 2.59
33 34 6.534634 AGTAAAATATGCTCCCATGTACTCC 58.465 40.000 0.00 0.00 32.85 3.85
34 35 5.653255 AAAATATGCTCCCATGTACTCCT 57.347 39.130 0.00 0.00 32.85 3.69
35 36 5.653255 AAATATGCTCCCATGTACTCCTT 57.347 39.130 0.00 0.00 32.85 3.36
36 37 4.899352 ATATGCTCCCATGTACTCCTTC 57.101 45.455 0.00 0.00 32.85 3.46
37 38 1.204146 TGCTCCCATGTACTCCTTCC 58.796 55.000 0.00 0.00 0.00 3.46
38 39 0.105039 GCTCCCATGTACTCCTTCCG 59.895 60.000 0.00 0.00 0.00 4.30
39 40 1.486211 CTCCCATGTACTCCTTCCGT 58.514 55.000 0.00 0.00 0.00 4.69
40 41 1.831736 CTCCCATGTACTCCTTCCGTT 59.168 52.381 0.00 0.00 0.00 4.44
41 42 1.829222 TCCCATGTACTCCTTCCGTTC 59.171 52.381 0.00 0.00 0.00 3.95
42 43 1.831736 CCCATGTACTCCTTCCGTTCT 59.168 52.381 0.00 0.00 0.00 3.01
43 44 2.236395 CCCATGTACTCCTTCCGTTCTT 59.764 50.000 0.00 0.00 0.00 2.52
44 45 3.449737 CCCATGTACTCCTTCCGTTCTTA 59.550 47.826 0.00 0.00 0.00 2.10
45 46 4.081309 CCCATGTACTCCTTCCGTTCTTAA 60.081 45.833 0.00 0.00 0.00 1.85
46 47 5.484715 CCATGTACTCCTTCCGTTCTTAAA 58.515 41.667 0.00 0.00 0.00 1.52
47 48 6.113411 CCATGTACTCCTTCCGTTCTTAAAT 58.887 40.000 0.00 0.00 0.00 1.40
48 49 7.270047 CCATGTACTCCTTCCGTTCTTAAATA 58.730 38.462 0.00 0.00 0.00 1.40
49 50 7.931948 CCATGTACTCCTTCCGTTCTTAAATAT 59.068 37.037 0.00 0.00 0.00 1.28
50 51 9.326413 CATGTACTCCTTCCGTTCTTAAATATT 57.674 33.333 0.00 0.00 0.00 1.28
51 52 9.901172 ATGTACTCCTTCCGTTCTTAAATATTT 57.099 29.630 5.89 5.89 0.00 1.40
52 53 9.158233 TGTACTCCTTCCGTTCTTAAATATTTG 57.842 33.333 11.05 0.00 0.00 2.32
53 54 9.159364 GTACTCCTTCCGTTCTTAAATATTTGT 57.841 33.333 11.05 0.00 0.00 2.83
54 55 8.631480 ACTCCTTCCGTTCTTAAATATTTGTT 57.369 30.769 11.05 0.00 0.00 2.83
55 56 9.074576 ACTCCTTCCGTTCTTAAATATTTGTTT 57.925 29.630 11.05 0.00 0.00 2.83
56 57 9.908152 CTCCTTCCGTTCTTAAATATTTGTTTT 57.092 29.630 11.05 0.00 0.00 2.43
90 91 9.932207 ATTTCAATAAATGAGCAAAATGAGTGA 57.068 25.926 0.00 0.00 39.77 3.41
91 92 9.761504 TTTCAATAAATGAGCAAAATGAGTGAA 57.238 25.926 0.00 0.00 39.77 3.18
92 93 9.932207 TTCAATAAATGAGCAAAATGAGTGAAT 57.068 25.926 0.00 0.00 39.77 2.57
93 94 9.932207 TCAATAAATGAGCAAAATGAGTGAATT 57.068 25.926 0.00 0.00 33.04 2.17
98 99 8.524870 AATGAGCAAAATGAGTGAATTTACAC 57.475 30.769 2.93 0.00 40.60 2.90
137 138 6.267496 CATACATCCGTATGTGATAGTCCA 57.733 41.667 3.56 0.00 46.70 4.02
138 139 6.867550 CATACATCCGTATGTGATAGTCCAT 58.132 40.000 3.56 0.00 46.70 3.41
139 140 5.808366 ACATCCGTATGTGATAGTCCATT 57.192 39.130 0.00 0.00 44.79 3.16
140 141 6.174720 ACATCCGTATGTGATAGTCCATTT 57.825 37.500 0.00 0.00 44.79 2.32
141 142 5.991606 ACATCCGTATGTGATAGTCCATTTG 59.008 40.000 0.00 0.00 44.79 2.32
142 143 5.862678 TCCGTATGTGATAGTCCATTTGA 57.137 39.130 0.00 0.00 0.00 2.69
143 144 6.228616 TCCGTATGTGATAGTCCATTTGAA 57.771 37.500 0.00 0.00 0.00 2.69
144 145 6.645306 TCCGTATGTGATAGTCCATTTGAAA 58.355 36.000 0.00 0.00 0.00 2.69
145 146 7.279615 TCCGTATGTGATAGTCCATTTGAAAT 58.720 34.615 0.00 0.00 0.00 2.17
146 147 7.773224 TCCGTATGTGATAGTCCATTTGAAATT 59.227 33.333 0.00 0.00 0.00 1.82
147 148 8.405531 CCGTATGTGATAGTCCATTTGAAATTT 58.594 33.333 0.00 0.00 0.00 1.82
148 149 9.787532 CGTATGTGATAGTCCATTTGAAATTTT 57.212 29.630 0.00 0.00 0.00 1.82
192 193 3.195825 ACAGAGGGAGTATTTTCTGGACG 59.804 47.826 5.47 0.00 40.97 4.79
193 194 3.195825 CAGAGGGAGTATTTTCTGGACGT 59.804 47.826 0.00 0.00 34.76 4.34
195 196 5.021458 AGAGGGAGTATTTTCTGGACGTAA 58.979 41.667 0.00 0.00 0.00 3.18
197 198 5.485620 AGGGAGTATTTTCTGGACGTAAAC 58.514 41.667 0.00 0.00 0.00 2.01
201 202 7.255208 GGGAGTATTTTCTGGACGTAAACAAAA 60.255 37.037 0.00 0.00 0.00 2.44
204 205 8.680001 AGTATTTTCTGGACGTAAACAAAACTT 58.320 29.630 0.00 0.00 0.00 2.66
229 230 0.462375 TGCTCCGCCACGTATTATGT 59.538 50.000 0.00 0.00 0.00 2.29
298 300 2.769663 TGTGTCTTGGTAGTGTTGGACT 59.230 45.455 0.00 0.00 38.88 3.85
299 301 3.131396 GTGTCTTGGTAGTGTTGGACTG 58.869 50.000 0.00 0.00 35.96 3.51
301 303 1.765904 TCTTGGTAGTGTTGGACTGCA 59.234 47.619 0.00 0.00 38.98 4.41
302 304 2.146342 CTTGGTAGTGTTGGACTGCAG 58.854 52.381 13.48 13.48 38.98 4.41
303 305 1.419381 TGGTAGTGTTGGACTGCAGA 58.581 50.000 23.35 0.00 38.98 4.26
304 306 1.765904 TGGTAGTGTTGGACTGCAGAA 59.234 47.619 23.35 0.48 38.98 3.02
312 328 2.618241 GTTGGACTGCAGAATTGTGTCA 59.382 45.455 23.35 3.59 34.18 3.58
315 331 3.890756 TGGACTGCAGAATTGTGTCATTT 59.109 39.130 23.35 0.00 34.18 2.32
318 334 5.336213 GGACTGCAGAATTGTGTCATTTGAT 60.336 40.000 23.35 0.00 34.18 2.57
321 337 5.953183 TGCAGAATTGTGTCATTTGATACC 58.047 37.500 4.33 0.00 35.62 2.73
346 362 7.872993 CCGATGTACTTTATCATCCACTTATGT 59.127 37.037 0.00 0.00 37.67 2.29
416 432 9.632807 TTTTAACAATTTGCATAAGTAGCGATT 57.367 25.926 0.00 0.00 33.85 3.34
448 464 5.793030 ATTTTATTGTGTTTGGGGAACGA 57.207 34.783 0.00 0.00 41.29 3.85
452 468 0.256464 TGTGTTTGGGGAACGAAGGT 59.744 50.000 0.00 0.00 41.29 3.50
454 470 2.092538 TGTGTTTGGGGAACGAAGGTAA 60.093 45.455 0.00 0.00 41.29 2.85
465 481 6.293698 GGGAACGAAGGTAATGTATAACCAT 58.706 40.000 0.00 0.00 38.30 3.55
495 511 7.015487 TCTCCAAGTGAAAAATTGATTGGATGT 59.985 33.333 5.03 0.00 43.73 3.06
537 554 7.997107 AAAATATCATGTACAAATGCTGCAG 57.003 32.000 10.11 10.11 0.00 4.41
538 555 6.947644 AATATCATGTACAAATGCTGCAGA 57.052 33.333 20.43 2.70 0.00 4.26
539 556 4.895224 ATCATGTACAAATGCTGCAGAG 57.105 40.909 20.43 3.40 0.00 3.35
540 557 3.941573 TCATGTACAAATGCTGCAGAGA 58.058 40.909 20.43 2.51 0.00 3.10
541 558 3.937079 TCATGTACAAATGCTGCAGAGAG 59.063 43.478 20.43 4.17 0.00 3.20
542 559 3.683365 TGTACAAATGCTGCAGAGAGA 57.317 42.857 20.43 0.00 0.00 3.10
543 560 3.593096 TGTACAAATGCTGCAGAGAGAG 58.407 45.455 20.43 6.12 0.00 3.20
544 561 3.259123 TGTACAAATGCTGCAGAGAGAGA 59.741 43.478 20.43 0.00 0.00 3.10
545 562 3.413846 ACAAATGCTGCAGAGAGAGAA 57.586 42.857 20.43 0.00 0.00 2.87
546 563 3.748083 ACAAATGCTGCAGAGAGAGAAA 58.252 40.909 20.43 0.00 0.00 2.52
547 564 4.139786 ACAAATGCTGCAGAGAGAGAAAA 58.860 39.130 20.43 0.00 0.00 2.29
548 565 4.581824 ACAAATGCTGCAGAGAGAGAAAAA 59.418 37.500 20.43 0.00 0.00 1.94
567 584 3.924114 AAAAAGAAACCAACCCAAGGG 57.076 42.857 2.91 2.91 42.03 3.95
568 585 1.128200 AAAGAAACCAACCCAAGGGC 58.872 50.000 4.70 0.00 39.32 5.19
569 586 0.264657 AAGAAACCAACCCAAGGGCT 59.735 50.000 4.70 0.00 39.32 5.19
570 587 1.154430 AGAAACCAACCCAAGGGCTA 58.846 50.000 4.70 0.00 39.32 3.93
571 588 1.501604 AGAAACCAACCCAAGGGCTAA 59.498 47.619 4.70 0.00 39.32 3.09
572 589 2.111792 AGAAACCAACCCAAGGGCTAAT 59.888 45.455 4.70 0.00 39.32 1.73
573 590 2.231716 AACCAACCCAAGGGCTAATC 57.768 50.000 4.70 0.00 39.32 1.75
574 591 0.335019 ACCAACCCAAGGGCTAATCC 59.665 55.000 4.70 0.00 39.32 3.01
575 592 0.631212 CCAACCCAAGGGCTAATCCT 59.369 55.000 4.70 0.00 39.32 3.24
576 593 1.410224 CCAACCCAAGGGCTAATCCTC 60.410 57.143 4.70 0.00 39.32 3.71
577 594 0.546598 AACCCAAGGGCTAATCCTCG 59.453 55.000 4.70 0.00 39.32 4.63
578 595 0.620700 ACCCAAGGGCTAATCCTCGT 60.621 55.000 4.70 0.00 39.32 4.18
579 596 0.546598 CCCAAGGGCTAATCCTCGTT 59.453 55.000 0.00 0.00 35.80 3.85
580 597 1.668419 CCAAGGGCTAATCCTCGTTG 58.332 55.000 0.00 0.00 35.80 4.10
581 598 1.668419 CAAGGGCTAATCCTCGTTGG 58.332 55.000 0.00 0.00 35.80 3.77
582 599 0.546598 AAGGGCTAATCCTCGTTGGG 59.453 55.000 0.00 0.00 35.80 4.12
583 600 0.326238 AGGGCTAATCCTCGTTGGGA 60.326 55.000 0.00 0.00 39.95 4.37
584 601 0.765510 GGGCTAATCCTCGTTGGGAT 59.234 55.000 0.00 0.00 46.96 3.85
597 614 9.726438 ATCCTCGTTGGGATTTATTTATAGAAG 57.274 33.333 0.00 0.00 42.89 2.85
598 615 8.930527 TCCTCGTTGGGATTTATTTATAGAAGA 58.069 33.333 0.00 0.00 36.20 2.87
599 616 9.555727 CCTCGTTGGGATTTATTTATAGAAGAA 57.444 33.333 0.00 0.00 0.00 2.52
612 629 8.859517 ATTTATAGAAGAAACTCTACGAGCAC 57.140 34.615 0.00 0.00 32.04 4.40
613 630 3.579335 AGAAGAAACTCTACGAGCACC 57.421 47.619 0.00 0.00 32.04 5.01
614 631 2.891580 AGAAGAAACTCTACGAGCACCA 59.108 45.455 0.00 0.00 32.04 4.17
615 632 2.726832 AGAAACTCTACGAGCACCAC 57.273 50.000 0.00 0.00 32.04 4.16
616 633 1.068472 AGAAACTCTACGAGCACCACG 60.068 52.381 0.00 0.00 32.04 4.94
617 634 0.666577 AAACTCTACGAGCACCACGC 60.667 55.000 0.00 0.00 42.91 5.34
626 643 2.713154 GCACCACGCGTTCAAGTT 59.287 55.556 10.22 0.00 0.00 2.66
627 644 1.654137 GCACCACGCGTTCAAGTTG 60.654 57.895 10.22 0.00 0.00 3.16
628 645 1.010125 CACCACGCGTTCAAGTTGG 60.010 57.895 10.22 8.84 0.00 3.77
629 646 2.184167 ACCACGCGTTCAAGTTGGG 61.184 57.895 10.22 7.88 0.00 4.12
630 647 1.890041 CCACGCGTTCAAGTTGGGA 60.890 57.895 10.22 0.00 0.00 4.37
631 648 1.278637 CACGCGTTCAAGTTGGGAC 59.721 57.895 10.22 1.88 0.00 4.46
632 649 1.145377 ACGCGTTCAAGTTGGGACT 59.855 52.632 5.58 0.00 37.87 3.85
633 650 0.463116 ACGCGTTCAAGTTGGGACTT 60.463 50.000 5.58 0.00 46.85 3.01
642 659 3.502123 AAGTTGGGACTTGAATTCGGA 57.498 42.857 0.04 0.00 44.27 4.55
643 660 3.721087 AGTTGGGACTTGAATTCGGAT 57.279 42.857 0.04 0.00 29.87 4.18
644 661 3.347216 AGTTGGGACTTGAATTCGGATG 58.653 45.455 0.04 0.00 29.87 3.51
645 662 2.418368 TGGGACTTGAATTCGGATGG 57.582 50.000 0.04 0.00 0.00 3.51
646 663 1.064758 TGGGACTTGAATTCGGATGGG 60.065 52.381 0.04 0.00 0.00 4.00
647 664 1.025041 GGACTTGAATTCGGATGGGC 58.975 55.000 0.04 0.00 0.00 5.36
648 665 1.408822 GGACTTGAATTCGGATGGGCT 60.409 52.381 0.04 0.00 0.00 5.19
649 666 1.672881 GACTTGAATTCGGATGGGCTG 59.327 52.381 0.04 0.00 0.00 4.85
650 667 1.004745 ACTTGAATTCGGATGGGCTGT 59.995 47.619 0.04 0.00 0.00 4.40
651 668 1.672881 CTTGAATTCGGATGGGCTGTC 59.327 52.381 0.04 0.00 0.00 3.51
652 669 0.617935 TGAATTCGGATGGGCTGTCA 59.382 50.000 0.04 0.00 0.00 3.58
653 670 1.303309 GAATTCGGATGGGCTGTCAG 58.697 55.000 0.00 0.00 0.00 3.51
654 671 0.749454 AATTCGGATGGGCTGTCAGC 60.749 55.000 16.93 16.93 41.46 4.26
655 672 1.913951 ATTCGGATGGGCTGTCAGCA 61.914 55.000 25.68 7.26 44.75 4.41
656 673 2.046023 CGGATGGGCTGTCAGCAA 60.046 61.111 25.68 13.95 44.75 3.91
657 674 2.401766 CGGATGGGCTGTCAGCAAC 61.402 63.158 25.68 17.72 44.75 4.17
658 675 1.303561 GGATGGGCTGTCAGCAACA 60.304 57.895 25.68 22.35 44.75 3.33
659 676 0.682209 GGATGGGCTGTCAGCAACAT 60.682 55.000 25.39 25.39 44.75 2.71
660 677 0.737219 GATGGGCTGTCAGCAACATC 59.263 55.000 29.85 29.85 44.75 3.06
661 678 0.038599 ATGGGCTGTCAGCAACATCA 59.961 50.000 25.68 14.79 44.75 3.07
662 679 0.607217 TGGGCTGTCAGCAACATCAG 60.607 55.000 25.68 0.00 44.75 2.90
664 681 2.552802 GCTGTCAGCAACATCAGCT 58.447 52.632 20.16 0.00 46.35 4.24
665 682 0.447011 GCTGTCAGCAACATCAGCTC 59.553 55.000 20.16 0.00 46.35 4.09
666 683 1.085091 CTGTCAGCAACATCAGCTCC 58.915 55.000 0.00 0.00 41.14 4.70
667 684 0.671472 TGTCAGCAACATCAGCTCCG 60.671 55.000 0.00 0.00 41.14 4.63
668 685 1.078918 TCAGCAACATCAGCTCCGG 60.079 57.895 0.00 0.00 41.14 5.14
669 686 1.078918 CAGCAACATCAGCTCCGGA 60.079 57.895 2.93 2.93 41.14 5.14
670 687 1.088340 CAGCAACATCAGCTCCGGAG 61.088 60.000 27.83 27.83 41.14 4.63
898 930 0.248215 CCAATAAAAGCCGCGCTCTG 60.248 55.000 5.56 0.00 38.25 3.35
920 953 0.591236 CGCCGTCCAAACACACAAAG 60.591 55.000 0.00 0.00 0.00 2.77
933 983 2.880268 CACACAAAGTCAGAGCATTCCA 59.120 45.455 0.00 0.00 0.00 3.53
934 984 3.316029 CACACAAAGTCAGAGCATTCCAA 59.684 43.478 0.00 0.00 0.00 3.53
935 985 3.953612 ACACAAAGTCAGAGCATTCCAAA 59.046 39.130 0.00 0.00 0.00 3.28
936 986 4.402155 ACACAAAGTCAGAGCATTCCAAAA 59.598 37.500 0.00 0.00 0.00 2.44
937 987 5.069516 ACACAAAGTCAGAGCATTCCAAAAT 59.930 36.000 0.00 0.00 0.00 1.82
938 988 5.632347 CACAAAGTCAGAGCATTCCAAAATC 59.368 40.000 0.00 0.00 0.00 2.17
939 989 5.166398 CAAAGTCAGAGCATTCCAAAATCC 58.834 41.667 0.00 0.00 0.00 3.01
1113 1174 3.659089 GAAGAAGGGCCGCTACGCA 62.659 63.158 0.00 0.00 0.00 5.24
1206 1269 0.546747 ATCTTTCCTGTCCGTCCCCA 60.547 55.000 0.00 0.00 0.00 4.96
1599 1701 7.095017 GGAGAAGATGACGAGACTTTTGATTTT 60.095 37.037 0.00 0.00 0.00 1.82
1617 1719 3.448469 TTTTTGCGGGATTGGGTCT 57.552 47.368 0.00 0.00 0.00 3.85
1743 1852 3.603532 TGCAATCATGTCCTCTTCTGAC 58.396 45.455 0.00 0.00 0.00 3.51
1783 1893 3.748048 TGCTTCAGAAAGTGTGCATCTAC 59.252 43.478 0.00 0.00 33.87 2.59
1784 1894 3.126000 GCTTCAGAAAGTGTGCATCTACC 59.874 47.826 0.00 0.00 34.79 3.18
1814 1925 9.877178 CTTGTACCTTCTGTCAGTTTATAAGAT 57.123 33.333 0.00 0.00 0.00 2.40
1961 2118 0.401738 TTTCCCCTCCAGCTGAGTTG 59.598 55.000 17.39 0.00 39.65 3.16
1982 2139 6.268847 AGTTGGTTGTAGATTATTTTGGCCAA 59.731 34.615 16.05 16.05 0.00 4.52
2036 2194 2.540361 GCCGGTGACATGTAGTACTACG 60.540 54.545 24.36 15.31 38.85 3.51
2053 2211 7.710896 AGTACTACGTACAACAAACTTCTTCT 58.289 34.615 0.00 0.00 41.03 2.85
2144 2302 8.648693 ACTATTGGACTGAACTACTAAAACAGT 58.351 33.333 0.00 0.00 43.10 3.55
2202 2360 9.554724 GTAACGCTCATCAATCAAAAATTAAGA 57.445 29.630 0.00 0.00 0.00 2.10
2209 2367 9.087871 TCATCAATCAAAAATTAAGACAAGGGA 57.912 29.630 0.00 0.00 0.00 4.20
2259 2417 3.890527 GGTACTACCTCGGTCCTGA 57.109 57.895 0.00 0.00 34.73 3.86
2260 2418 2.361643 GGTACTACCTCGGTCCTGAT 57.638 55.000 0.00 0.00 34.73 2.90
2261 2419 2.664015 GGTACTACCTCGGTCCTGATT 58.336 52.381 0.00 0.00 34.73 2.57
2262 2420 3.029570 GGTACTACCTCGGTCCTGATTT 58.970 50.000 0.00 0.00 34.73 2.17
2263 2421 3.181478 GGTACTACCTCGGTCCTGATTTG 60.181 52.174 0.00 0.00 34.73 2.32
2264 2422 2.537143 ACTACCTCGGTCCTGATTTGT 58.463 47.619 0.00 0.00 0.00 2.83
2265 2423 2.904434 ACTACCTCGGTCCTGATTTGTT 59.096 45.455 0.00 0.00 0.00 2.83
2266 2424 2.185004 ACCTCGGTCCTGATTTGTTG 57.815 50.000 0.00 0.00 0.00 3.33
2267 2425 1.271379 ACCTCGGTCCTGATTTGTTGG 60.271 52.381 0.00 0.00 0.00 3.77
2268 2426 1.271379 CCTCGGTCCTGATTTGTTGGT 60.271 52.381 0.00 0.00 0.00 3.67
2269 2427 2.076863 CTCGGTCCTGATTTGTTGGTC 58.923 52.381 0.00 0.00 0.00 4.02
2270 2428 1.165270 CGGTCCTGATTTGTTGGTCC 58.835 55.000 0.00 0.00 0.00 4.46
2271 2429 1.545841 GGTCCTGATTTGTTGGTCCC 58.454 55.000 0.00 0.00 0.00 4.46
2272 2430 1.075536 GGTCCTGATTTGTTGGTCCCT 59.924 52.381 0.00 0.00 0.00 4.20
2273 2431 2.307686 GGTCCTGATTTGTTGGTCCCTA 59.692 50.000 0.00 0.00 0.00 3.53
2274 2432 3.053619 GGTCCTGATTTGTTGGTCCCTAT 60.054 47.826 0.00 0.00 0.00 2.57
2275 2433 4.569865 GGTCCTGATTTGTTGGTCCCTATT 60.570 45.833 0.00 0.00 0.00 1.73
2276 2434 5.339695 GGTCCTGATTTGTTGGTCCCTATTA 60.340 44.000 0.00 0.00 0.00 0.98
2277 2435 6.365520 GTCCTGATTTGTTGGTCCCTATTAT 58.634 40.000 0.00 0.00 0.00 1.28
2278 2436 7.420913 GGTCCTGATTTGTTGGTCCCTATTATA 60.421 40.741 0.00 0.00 0.00 0.98
2279 2437 7.996644 GTCCTGATTTGTTGGTCCCTATTATAA 59.003 37.037 0.00 0.00 0.00 0.98
2280 2438 8.732854 TCCTGATTTGTTGGTCCCTATTATAAT 58.267 33.333 2.97 2.97 0.00 1.28
2281 2439 9.014297 CCTGATTTGTTGGTCCCTATTATAATC 57.986 37.037 0.00 0.00 0.00 1.75
2282 2440 9.799106 CTGATTTGTTGGTCCCTATTATAATCT 57.201 33.333 0.00 0.00 0.00 2.40
2283 2441 9.573166 TGATTTGTTGGTCCCTATTATAATCTG 57.427 33.333 0.00 0.00 0.00 2.90
2284 2442 9.574516 GATTTGTTGGTCCCTATTATAATCTGT 57.425 33.333 0.00 0.00 0.00 3.41
2285 2443 8.746052 TTTGTTGGTCCCTATTATAATCTGTG 57.254 34.615 0.00 0.00 0.00 3.66
2286 2444 6.296026 TGTTGGTCCCTATTATAATCTGTGC 58.704 40.000 0.00 0.00 0.00 4.57
2287 2445 5.499004 TGGTCCCTATTATAATCTGTGCC 57.501 43.478 0.00 1.89 0.00 5.01
2288 2446 4.910913 TGGTCCCTATTATAATCTGTGCCA 59.089 41.667 0.00 4.37 0.00 4.92
2289 2447 5.371176 TGGTCCCTATTATAATCTGTGCCAA 59.629 40.000 0.00 0.00 0.00 4.52
2290 2448 6.126332 TGGTCCCTATTATAATCTGTGCCAAA 60.126 38.462 0.00 0.00 0.00 3.28
2291 2449 6.206829 GGTCCCTATTATAATCTGTGCCAAAC 59.793 42.308 0.00 0.00 0.00 2.93
2292 2450 6.998673 GTCCCTATTATAATCTGTGCCAAACT 59.001 38.462 0.00 0.00 0.00 2.66
2293 2451 7.502561 GTCCCTATTATAATCTGTGCCAAACTT 59.497 37.037 0.00 0.00 0.00 2.66
2294 2452 8.058847 TCCCTATTATAATCTGTGCCAAACTTT 58.941 33.333 0.00 0.00 0.00 2.66
2295 2453 9.349713 CCCTATTATAATCTGTGCCAAACTTTA 57.650 33.333 0.00 0.00 0.00 1.85
2333 2491 9.740239 ACTAATAAAATGTTCATGCATGTGATC 57.260 29.630 25.43 14.33 0.00 2.92
2334 2492 9.961265 CTAATAAAATGTTCATGCATGTGATCT 57.039 29.630 25.43 7.01 0.00 2.75
2339 2497 9.661563 AAAATGTTCATGCATGTGATCTAAAAT 57.338 25.926 25.43 9.63 0.00 1.82
2340 2498 9.661563 AAATGTTCATGCATGTGATCTAAAATT 57.338 25.926 25.43 14.62 0.00 1.82
2376 2534 9.912634 AACACTATGTTCAAATACAAATCCAAG 57.087 29.630 0.00 0.00 35.27 3.61
2377 2535 8.522830 ACACTATGTTCAAATACAAATCCAAGG 58.477 33.333 0.00 0.00 0.00 3.61
2378 2536 8.739039 CACTATGTTCAAATACAAATCCAAGGA 58.261 33.333 0.00 0.00 0.00 3.36
2379 2537 9.479549 ACTATGTTCAAATACAAATCCAAGGAT 57.520 29.630 0.00 0.00 36.23 3.24
2395 2553 9.844257 AATCCAAGGATTTAATTTTTGTTGACA 57.156 25.926 8.51 0.00 41.55 3.58
2397 2555 9.270640 TCCAAGGATTTAATTTTTGTTGACATG 57.729 29.630 0.00 0.00 0.00 3.21
2398 2556 8.016801 CCAAGGATTTAATTTTTGTTGACATGC 58.983 33.333 0.00 0.00 0.00 4.06
2399 2557 8.557864 CAAGGATTTAATTTTTGTTGACATGCA 58.442 29.630 0.00 0.00 0.00 3.96
2400 2558 8.086851 AGGATTTAATTTTTGTTGACATGCAC 57.913 30.769 0.00 0.00 0.00 4.57
2401 2559 7.933033 AGGATTTAATTTTTGTTGACATGCACT 59.067 29.630 0.00 0.00 0.00 4.40
2402 2560 9.202273 GGATTTAATTTTTGTTGACATGCACTA 57.798 29.630 0.00 0.00 0.00 2.74
2405 2563 8.932945 TTAATTTTTGTTGACATGCACTAACA 57.067 26.923 0.00 0.00 0.00 2.41
2406 2564 9.539825 TTAATTTTTGTTGACATGCACTAACAT 57.460 25.926 0.00 0.00 33.56 2.71
2407 2565 8.436046 AATTTTTGTTGACATGCACTAACATT 57.564 26.923 0.00 0.00 33.56 2.71
2408 2566 7.840342 TTTTTGTTGACATGCACTAACATTT 57.160 28.000 0.00 0.00 33.56 2.32
2409 2567 7.840342 TTTTGTTGACATGCACTAACATTTT 57.160 28.000 0.00 0.00 33.56 1.82
2410 2568 8.932945 TTTTGTTGACATGCACTAACATTTTA 57.067 26.923 0.00 0.00 33.56 1.52
2411 2569 9.539825 TTTTGTTGACATGCACTAACATTTTAT 57.460 25.926 0.00 0.00 33.56 1.40
2412 2570 8.741101 TTGTTGACATGCACTAACATTTTATC 57.259 30.769 0.00 0.00 33.56 1.75
2413 2571 7.880105 TGTTGACATGCACTAACATTTTATCA 58.120 30.769 0.00 0.00 0.00 2.15
2414 2572 8.022550 TGTTGACATGCACTAACATTTTATCAG 58.977 33.333 0.00 0.00 0.00 2.90
2415 2573 7.686438 TGACATGCACTAACATTTTATCAGT 57.314 32.000 0.00 0.00 0.00 3.41
2416 2574 8.109705 TGACATGCACTAACATTTTATCAGTT 57.890 30.769 0.00 0.00 0.00 3.16
2417 2575 9.225436 TGACATGCACTAACATTTTATCAGTTA 57.775 29.630 0.00 0.00 0.00 2.24
2456 2614 9.884636 AAATTTAGCATAAATTACAAAGGGGAC 57.115 29.630 7.68 0.00 30.38 4.46
2458 2616 9.930158 ATTTAGCATAAATTACAAAGGGGACTA 57.070 29.630 0.00 0.00 42.68 2.59
2459 2617 9.756571 TTTAGCATAAATTACAAAGGGGACTAA 57.243 29.630 0.00 0.00 42.68 2.24
2460 2618 9.930158 TTAGCATAAATTACAAAGGGGACTAAT 57.070 29.630 0.00 0.00 42.68 1.73
2462 2620 9.930158 AGCATAAATTACAAAGGGGACTAATAA 57.070 29.630 0.00 0.00 42.68 1.40
2468 2626 9.916360 AATTACAAAGGGGACTAATAAACTAGG 57.084 33.333 0.00 0.00 42.68 3.02
2469 2627 8.683776 TTACAAAGGGGACTAATAAACTAGGA 57.316 34.615 0.00 0.00 42.68 2.94
2470 2628 6.955364 ACAAAGGGGACTAATAAACTAGGAC 58.045 40.000 0.00 0.00 42.68 3.85
2471 2629 5.866159 AAGGGGACTAATAAACTAGGACG 57.134 43.478 0.00 0.00 42.68 4.79
2472 2630 4.221530 AGGGGACTAATAAACTAGGACGG 58.778 47.826 0.00 0.00 40.61 4.79
2473 2631 4.078980 AGGGGACTAATAAACTAGGACGGA 60.079 45.833 0.00 0.00 40.61 4.69
2474 2632 4.280425 GGGGACTAATAAACTAGGACGGAG 59.720 50.000 0.00 0.00 0.00 4.63
2475 2633 4.280425 GGGACTAATAAACTAGGACGGAGG 59.720 50.000 0.00 0.00 0.00 4.30
2476 2634 4.892345 GGACTAATAAACTAGGACGGAGGT 59.108 45.833 0.00 0.00 0.00 3.85
2477 2635 6.064717 GGACTAATAAACTAGGACGGAGGTA 58.935 44.000 0.00 0.00 0.00 3.08
2478 2636 6.206438 GGACTAATAAACTAGGACGGAGGTAG 59.794 46.154 0.00 0.00 0.00 3.18
2493 2651 7.135591 ACGGAGGTAGTACTAGTAGAAGAAT 57.864 40.000 1.87 0.00 0.00 2.40
2494 2652 6.991531 ACGGAGGTAGTACTAGTAGAAGAATG 59.008 42.308 1.87 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.908152 AAAACAAATATTTAAGAACGGAAGGAG 57.092 29.630 0.00 0.00 0.00 3.69
64 65 9.932207 TCACTCATTTTGCTCATTTATTGAAAT 57.068 25.926 0.00 0.00 35.56 2.17
65 66 9.761504 TTCACTCATTTTGCTCATTTATTGAAA 57.238 25.926 0.00 0.00 32.78 2.69
66 67 9.932207 ATTCACTCATTTTGCTCATTTATTGAA 57.068 25.926 0.00 0.00 32.78 2.69
67 68 9.932207 AATTCACTCATTTTGCTCATTTATTGA 57.068 25.926 0.00 0.00 0.00 2.57
72 73 8.981647 GTGTAAATTCACTCATTTTGCTCATTT 58.018 29.630 0.00 0.00 35.68 2.32
73 74 8.362639 AGTGTAAATTCACTCATTTTGCTCATT 58.637 29.630 0.00 0.00 44.07 2.57
74 75 7.889469 AGTGTAAATTCACTCATTTTGCTCAT 58.111 30.769 0.00 0.00 44.07 2.90
75 76 7.275888 AGTGTAAATTCACTCATTTTGCTCA 57.724 32.000 0.00 0.00 44.07 4.26
115 116 7.482169 AATGGACTATCACATACGGATGTAT 57.518 36.000 14.23 10.02 44.82 2.29
116 117 6.911250 AATGGACTATCACATACGGATGTA 57.089 37.500 14.23 2.61 44.82 2.29
118 119 6.223120 TCAAATGGACTATCACATACGGATG 58.777 40.000 5.94 5.94 39.16 3.51
119 120 6.419484 TCAAATGGACTATCACATACGGAT 57.581 37.500 0.00 0.00 0.00 4.18
120 121 5.862678 TCAAATGGACTATCACATACGGA 57.137 39.130 0.00 0.00 0.00 4.69
121 122 6.918892 TTTCAAATGGACTATCACATACGG 57.081 37.500 0.00 0.00 0.00 4.02
122 123 9.787532 AAAATTTCAAATGGACTATCACATACG 57.212 29.630 0.00 0.00 0.00 3.06
162 163 9.454859 CAGAAAATACTCCCTCTGTTCTTAAAT 57.545 33.333 0.00 0.00 32.38 1.40
163 164 7.883311 CCAGAAAATACTCCCTCTGTTCTTAAA 59.117 37.037 0.00 0.00 34.70 1.52
164 165 7.236847 TCCAGAAAATACTCCCTCTGTTCTTAA 59.763 37.037 0.00 0.00 34.70 1.85
165 166 6.729100 TCCAGAAAATACTCCCTCTGTTCTTA 59.271 38.462 0.00 0.00 34.70 2.10
166 167 5.548056 TCCAGAAAATACTCCCTCTGTTCTT 59.452 40.000 0.00 0.00 34.70 2.52
167 168 5.046231 GTCCAGAAAATACTCCCTCTGTTCT 60.046 44.000 0.00 0.00 34.70 3.01
168 169 5.179533 GTCCAGAAAATACTCCCTCTGTTC 58.820 45.833 0.00 0.00 34.70 3.18
169 170 4.322801 CGTCCAGAAAATACTCCCTCTGTT 60.323 45.833 0.00 0.00 34.70 3.16
170 171 3.195825 CGTCCAGAAAATACTCCCTCTGT 59.804 47.826 0.00 0.00 34.70 3.41
171 172 3.195825 ACGTCCAGAAAATACTCCCTCTG 59.804 47.826 0.00 0.00 35.99 3.35
172 173 3.442076 ACGTCCAGAAAATACTCCCTCT 58.558 45.455 0.00 0.00 0.00 3.69
173 174 3.889520 ACGTCCAGAAAATACTCCCTC 57.110 47.619 0.00 0.00 0.00 4.30
174 175 5.012354 TGTTTACGTCCAGAAAATACTCCCT 59.988 40.000 0.00 0.00 0.00 4.20
175 176 5.240121 TGTTTACGTCCAGAAAATACTCCC 58.760 41.667 0.00 0.00 0.00 4.30
176 177 6.790285 TTGTTTACGTCCAGAAAATACTCC 57.210 37.500 0.00 0.00 0.00 3.85
177 178 8.340443 AGTTTTGTTTACGTCCAGAAAATACTC 58.660 33.333 0.00 0.00 0.00 2.59
178 179 8.217131 AGTTTTGTTTACGTCCAGAAAATACT 57.783 30.769 0.00 0.00 0.00 2.12
179 180 8.845942 AAGTTTTGTTTACGTCCAGAAAATAC 57.154 30.769 0.00 0.00 0.00 1.89
180 181 8.895737 AGAAGTTTTGTTTACGTCCAGAAAATA 58.104 29.630 0.00 0.00 0.00 1.40
181 182 7.768240 AGAAGTTTTGTTTACGTCCAGAAAAT 58.232 30.769 0.00 0.00 0.00 1.82
185 186 5.644636 ACAAGAAGTTTTGTTTACGTCCAGA 59.355 36.000 0.00 0.00 38.05 3.86
192 193 5.229260 CGGAGCAACAAGAAGTTTTGTTTAC 59.771 40.000 11.19 8.30 46.18 2.01
193 194 5.336744 CGGAGCAACAAGAAGTTTTGTTTA 58.663 37.500 11.19 0.00 46.18 2.01
229 230 1.202830 ACCGGCAAAACTCACCATGTA 60.203 47.619 0.00 0.00 0.00 2.29
273 275 3.242608 CCAACACTACCAAGACACAAACG 60.243 47.826 0.00 0.00 0.00 3.60
298 300 5.391843 CGGTATCAAATGACACAATTCTGCA 60.392 40.000 0.00 0.00 0.00 4.41
299 301 5.030295 CGGTATCAAATGACACAATTCTGC 58.970 41.667 0.00 0.00 0.00 4.26
301 303 6.599244 ACATCGGTATCAAATGACACAATTCT 59.401 34.615 0.00 0.00 0.00 2.40
302 304 6.785191 ACATCGGTATCAAATGACACAATTC 58.215 36.000 0.00 0.00 0.00 2.17
303 305 6.757897 ACATCGGTATCAAATGACACAATT 57.242 33.333 0.00 0.00 0.00 2.32
304 306 7.047891 AGTACATCGGTATCAAATGACACAAT 58.952 34.615 0.00 0.00 0.00 2.71
312 328 9.436957 GGATGATAAAGTACATCGGTATCAAAT 57.563 33.333 0.00 0.00 42.34 2.32
315 331 7.232737 AGTGGATGATAAAGTACATCGGTATCA 59.767 37.037 0.00 1.55 42.34 2.15
318 334 6.971726 AGTGGATGATAAAGTACATCGGTA 57.028 37.500 0.00 0.00 42.34 4.02
321 337 8.818141 ACATAAGTGGATGATAAAGTACATCG 57.182 34.615 0.00 0.00 42.34 3.84
394 410 5.516339 GCAATCGCTACTTATGCAAATTGTT 59.484 36.000 0.00 0.00 36.48 2.83
416 432 7.605691 CCCAAACACAATAAAATAAATCCAGCA 59.394 33.333 0.00 0.00 0.00 4.41
465 481 9.709495 CCAATCAATTTTTCACTTGGAGAAATA 57.291 29.630 0.00 0.00 38.85 1.40
473 489 9.695526 TCTTACATCCAATCAATTTTTCACTTG 57.304 29.630 0.00 0.00 0.00 3.16
515 532 6.769341 TCTCTGCAGCATTTGTACATGATATT 59.231 34.615 9.47 0.00 0.00 1.28
518 535 4.520179 TCTCTGCAGCATTTGTACATGAT 58.480 39.130 9.47 0.00 0.00 2.45
519 536 3.937079 CTCTCTGCAGCATTTGTACATGA 59.063 43.478 9.47 0.00 0.00 3.07
520 537 3.937079 TCTCTCTGCAGCATTTGTACATG 59.063 43.478 9.47 0.00 0.00 3.21
521 538 4.081254 TCTCTCTCTGCAGCATTTGTACAT 60.081 41.667 9.47 0.00 0.00 2.29
523 540 3.854666 TCTCTCTCTGCAGCATTTGTAC 58.145 45.455 9.47 0.00 0.00 2.90
526 543 4.761235 TTTTCTCTCTCTGCAGCATTTG 57.239 40.909 9.47 0.00 0.00 2.32
547 564 2.092646 GCCCTTGGGTTGGTTTCTTTTT 60.093 45.455 7.61 0.00 0.00 1.94
548 565 1.488812 GCCCTTGGGTTGGTTTCTTTT 59.511 47.619 7.61 0.00 0.00 2.27
549 566 1.128200 GCCCTTGGGTTGGTTTCTTT 58.872 50.000 7.61 0.00 0.00 2.52
550 567 0.264657 AGCCCTTGGGTTGGTTTCTT 59.735 50.000 7.61 0.00 0.00 2.52
551 568 1.154430 TAGCCCTTGGGTTGGTTTCT 58.846 50.000 7.61 0.00 34.28 2.52
552 569 2.003937 TTAGCCCTTGGGTTGGTTTC 57.996 50.000 7.61 0.00 34.28 2.78
553 570 2.536066 GATTAGCCCTTGGGTTGGTTT 58.464 47.619 7.61 0.00 34.28 3.27
554 571 1.273041 GGATTAGCCCTTGGGTTGGTT 60.273 52.381 7.61 0.00 34.28 3.67
555 572 0.335019 GGATTAGCCCTTGGGTTGGT 59.665 55.000 7.61 0.00 34.28 3.67
556 573 0.631212 AGGATTAGCCCTTGGGTTGG 59.369 55.000 7.61 0.00 37.37 3.77
557 574 1.747206 CGAGGATTAGCCCTTGGGTTG 60.747 57.143 7.61 0.00 36.49 3.77
558 575 0.546598 CGAGGATTAGCCCTTGGGTT 59.453 55.000 7.61 3.76 36.49 4.11
559 576 0.620700 ACGAGGATTAGCCCTTGGGT 60.621 55.000 7.61 0.00 41.18 4.51
560 577 0.546598 AACGAGGATTAGCCCTTGGG 59.453 55.000 0.32 0.32 41.18 4.12
561 578 1.668419 CAACGAGGATTAGCCCTTGG 58.332 55.000 0.00 0.00 41.18 3.61
562 579 1.668419 CCAACGAGGATTAGCCCTTG 58.332 55.000 0.00 0.00 42.32 3.61
563 580 0.546598 CCCAACGAGGATTAGCCCTT 59.453 55.000 0.00 0.00 41.22 3.95
564 581 0.326238 TCCCAACGAGGATTAGCCCT 60.326 55.000 0.00 0.00 41.22 5.19
565 582 0.765510 ATCCCAACGAGGATTAGCCC 59.234 55.000 0.00 0.00 44.61 5.19
572 589 8.930527 TCTTCTATAAATAAATCCCAACGAGGA 58.069 33.333 0.00 0.00 41.22 3.71
573 590 9.555727 TTCTTCTATAAATAAATCCCAACGAGG 57.444 33.333 0.00 0.00 37.03 4.63
602 619 2.791396 GAACGCGTGGTGCTCGTAGA 62.791 60.000 14.98 0.00 43.27 2.59
603 620 2.430244 AACGCGTGGTGCTCGTAG 60.430 61.111 14.98 0.00 43.27 3.51
604 621 2.429571 GAACGCGTGGTGCTCGTA 60.430 61.111 14.98 0.00 43.27 3.43
605 622 4.578898 TGAACGCGTGGTGCTCGT 62.579 61.111 14.98 0.00 43.27 4.18
606 623 3.281751 CTTGAACGCGTGGTGCTCG 62.282 63.158 14.98 0.00 43.27 5.03
607 624 1.772063 AACTTGAACGCGTGGTGCTC 61.772 55.000 14.98 6.74 43.27 4.26
608 625 1.817941 AACTTGAACGCGTGGTGCT 60.818 52.632 14.98 0.00 43.27 4.40
609 626 1.654137 CAACTTGAACGCGTGGTGC 60.654 57.895 14.98 3.32 41.47 5.01
610 627 1.010125 CCAACTTGAACGCGTGGTG 60.010 57.895 14.98 9.26 0.00 4.17
611 628 2.184167 CCCAACTTGAACGCGTGGT 61.184 57.895 14.98 7.08 0.00 4.16
612 629 1.890041 TCCCAACTTGAACGCGTGG 60.890 57.895 14.98 7.74 0.00 4.94
613 630 1.157870 AGTCCCAACTTGAACGCGTG 61.158 55.000 14.98 1.65 28.74 5.34
614 631 0.463116 AAGTCCCAACTTGAACGCGT 60.463 50.000 5.58 5.58 44.13 6.01
615 632 2.317230 AAGTCCCAACTTGAACGCG 58.683 52.632 3.53 3.53 44.13 6.01
622 639 3.502123 TCCGAATTCAAGTCCCAACTT 57.498 42.857 6.22 0.00 46.80 2.66
623 640 3.347216 CATCCGAATTCAAGTCCCAACT 58.653 45.455 6.22 0.00 37.32 3.16
624 641 2.423538 CCATCCGAATTCAAGTCCCAAC 59.576 50.000 6.22 0.00 0.00 3.77
625 642 2.620367 CCCATCCGAATTCAAGTCCCAA 60.620 50.000 6.22 0.00 0.00 4.12
626 643 1.064758 CCCATCCGAATTCAAGTCCCA 60.065 52.381 6.22 0.00 0.00 4.37
627 644 1.680338 CCCATCCGAATTCAAGTCCC 58.320 55.000 6.22 0.00 0.00 4.46
628 645 1.025041 GCCCATCCGAATTCAAGTCC 58.975 55.000 6.22 0.00 0.00 3.85
629 646 1.672881 CAGCCCATCCGAATTCAAGTC 59.327 52.381 6.22 0.00 0.00 3.01
630 647 1.004745 ACAGCCCATCCGAATTCAAGT 59.995 47.619 6.22 0.00 0.00 3.16
631 648 1.672881 GACAGCCCATCCGAATTCAAG 59.327 52.381 6.22 0.00 0.00 3.02
632 649 1.004161 TGACAGCCCATCCGAATTCAA 59.996 47.619 6.22 0.00 0.00 2.69
633 650 0.617935 TGACAGCCCATCCGAATTCA 59.382 50.000 6.22 0.00 0.00 2.57
634 651 1.303309 CTGACAGCCCATCCGAATTC 58.697 55.000 0.00 0.00 0.00 2.17
635 652 0.749454 GCTGACAGCCCATCCGAATT 60.749 55.000 17.01 0.00 34.48 2.17
636 653 1.153086 GCTGACAGCCCATCCGAAT 60.153 57.895 17.01 0.00 34.48 3.34
637 654 2.123248 TTGCTGACAGCCCATCCGAA 62.123 55.000 24.33 7.47 41.51 4.30
638 655 2.592032 TTGCTGACAGCCCATCCGA 61.592 57.895 24.33 0.79 41.51 4.55
639 656 2.046023 TTGCTGACAGCCCATCCG 60.046 61.111 24.33 0.00 41.51 4.18
640 657 0.682209 ATGTTGCTGACAGCCCATCC 60.682 55.000 24.33 8.23 42.62 3.51
641 658 0.737219 GATGTTGCTGACAGCCCATC 59.263 55.000 27.56 27.56 42.62 3.51
642 659 0.038599 TGATGTTGCTGACAGCCCAT 59.961 50.000 24.33 23.34 43.96 4.00
643 660 0.607217 CTGATGTTGCTGACAGCCCA 60.607 55.000 24.33 19.95 43.96 5.36
644 661 1.930908 GCTGATGTTGCTGACAGCCC 61.931 60.000 24.33 15.08 43.96 5.19
645 662 1.505353 GCTGATGTTGCTGACAGCC 59.495 57.895 24.33 10.67 43.96 4.85
647 664 1.085091 GGAGCTGATGTTGCTGACAG 58.915 55.000 0.00 0.00 42.62 3.51
648 665 0.671472 CGGAGCTGATGTTGCTGACA 60.671 55.000 0.00 0.00 41.30 3.58
649 666 1.364626 CCGGAGCTGATGTTGCTGAC 61.365 60.000 0.00 0.00 41.30 3.51
650 667 1.078918 CCGGAGCTGATGTTGCTGA 60.079 57.895 0.00 0.00 41.30 4.26
651 668 1.078918 TCCGGAGCTGATGTTGCTG 60.079 57.895 0.00 0.00 41.30 4.41
652 669 1.220206 CTCCGGAGCTGATGTTGCT 59.780 57.895 20.67 0.00 44.24 3.91
653 670 3.805267 CTCCGGAGCTGATGTTGC 58.195 61.111 20.67 0.00 0.00 4.17
682 699 3.134127 GCATTGAGGACGGGGCAC 61.134 66.667 0.00 0.00 0.00 5.01
683 700 3.329889 AGCATTGAGGACGGGGCA 61.330 61.111 0.00 0.00 0.00 5.36
684 701 2.825836 CAGCATTGAGGACGGGGC 60.826 66.667 0.00 0.00 0.00 5.80
685 702 2.825836 GCAGCATTGAGGACGGGG 60.826 66.667 0.00 0.00 0.00 5.73
686 703 2.046023 TGCAGCATTGAGGACGGG 60.046 61.111 0.00 0.00 0.00 5.28
687 704 1.078918 TCTGCAGCATTGAGGACGG 60.079 57.895 9.47 0.00 0.00 4.79
688 705 0.108472 TCTCTGCAGCATTGAGGACG 60.108 55.000 9.47 0.00 0.00 4.79
689 706 1.206610 TCTCTCTGCAGCATTGAGGAC 59.793 52.381 9.47 0.00 0.00 3.85
690 707 1.481363 CTCTCTCTGCAGCATTGAGGA 59.519 52.381 9.47 11.33 0.00 3.71
691 708 1.481363 TCTCTCTCTGCAGCATTGAGG 59.519 52.381 9.47 12.50 0.00 3.86
692 709 2.931325 GTTCTCTCTCTGCAGCATTGAG 59.069 50.000 9.47 13.16 0.00 3.02
693 710 2.354503 GGTTCTCTCTCTGCAGCATTGA 60.355 50.000 9.47 3.73 0.00 2.57
694 711 2.008329 GGTTCTCTCTCTGCAGCATTG 58.992 52.381 9.47 0.00 0.00 2.82
870 891 1.751351 GGCTTTTATTGGAGGCAGGAC 59.249 52.381 0.00 0.00 38.25 3.85
920 953 3.009723 TCGGATTTTGGAATGCTCTGAC 58.990 45.455 0.00 0.00 32.01 3.51
933 983 0.039527 GCGGTGCTTGTTCGGATTTT 60.040 50.000 0.00 0.00 0.00 1.82
934 984 1.579429 GCGGTGCTTGTTCGGATTT 59.421 52.632 0.00 0.00 0.00 2.17
935 985 2.332654 GGCGGTGCTTGTTCGGATT 61.333 57.895 0.00 0.00 0.00 3.01
936 986 2.746277 GGCGGTGCTTGTTCGGAT 60.746 61.111 0.00 0.00 0.00 4.18
1599 1701 1.342819 CAAGACCCAATCCCGCAAAAA 59.657 47.619 0.00 0.00 0.00 1.94
1602 1704 0.693622 TACAAGACCCAATCCCGCAA 59.306 50.000 0.00 0.00 0.00 4.85
1603 1705 0.693622 TTACAAGACCCAATCCCGCA 59.306 50.000 0.00 0.00 0.00 5.69
1605 1707 2.099098 GCAATTACAAGACCCAATCCCG 59.901 50.000 0.00 0.00 0.00 5.14
1606 1708 2.430694 GGCAATTACAAGACCCAATCCC 59.569 50.000 0.00 0.00 0.00 3.85
1607 1709 3.365472 AGGCAATTACAAGACCCAATCC 58.635 45.455 0.00 0.00 0.00 3.01
1608 1710 5.193679 ACTAGGCAATTACAAGACCCAATC 58.806 41.667 0.00 0.00 0.00 2.67
1609 1711 5.044846 AGACTAGGCAATTACAAGACCCAAT 60.045 40.000 0.00 0.00 0.00 3.16
1611 1713 3.844211 AGACTAGGCAATTACAAGACCCA 59.156 43.478 0.00 0.00 0.00 4.51
1612 1714 4.192317 CAGACTAGGCAATTACAAGACCC 58.808 47.826 0.00 0.00 0.00 4.46
1614 1716 6.531948 CACTACAGACTAGGCAATTACAAGAC 59.468 42.308 0.00 0.00 0.00 3.01
1615 1717 6.351033 CCACTACAGACTAGGCAATTACAAGA 60.351 42.308 0.00 0.00 0.00 3.02
1616 1718 5.812642 CCACTACAGACTAGGCAATTACAAG 59.187 44.000 0.00 0.00 0.00 3.16
1617 1719 5.730550 CCACTACAGACTAGGCAATTACAA 58.269 41.667 0.00 0.00 0.00 2.41
1743 1852 1.266989 GCAAAAGCACGCAACAAACAG 60.267 47.619 0.00 0.00 0.00 3.16
1784 1894 1.279271 CTGACAGAAGGTACAAGGGGG 59.721 57.143 0.00 0.00 0.00 5.40
1961 2118 6.872920 TGATTGGCCAAAATAATCTACAACC 58.127 36.000 24.71 0.00 33.21 3.77
2036 2194 7.421530 TGCATCTAGAAGAAGTTTGTTGTAC 57.578 36.000 0.00 0.00 0.00 2.90
2144 2302 9.221933 TCTTAATTTTTCAGTAAGCATCCGTTA 57.778 29.630 0.00 0.00 0.00 3.18
2191 2349 6.986250 AGCTCTTCCCTTGTCTTAATTTTTG 58.014 36.000 0.00 0.00 0.00 2.44
2202 2360 2.632763 ACTCCTAGCTCTTCCCTTGT 57.367 50.000 0.00 0.00 0.00 3.16
2209 2367 2.661718 GCCTGACTACTCCTAGCTCTT 58.338 52.381 0.00 0.00 0.00 2.85
2243 2401 3.705051 ACAAATCAGGACCGAGGTAGTA 58.295 45.455 0.00 0.00 0.00 1.82
2244 2402 2.537143 ACAAATCAGGACCGAGGTAGT 58.463 47.619 0.00 0.00 0.00 2.73
2245 2403 3.262420 CAACAAATCAGGACCGAGGTAG 58.738 50.000 0.00 0.00 0.00 3.18
2246 2404 2.027561 CCAACAAATCAGGACCGAGGTA 60.028 50.000 0.00 0.00 0.00 3.08
2247 2405 1.271379 CCAACAAATCAGGACCGAGGT 60.271 52.381 0.00 0.00 0.00 3.85
2248 2406 1.271379 ACCAACAAATCAGGACCGAGG 60.271 52.381 0.00 0.00 0.00 4.63
2249 2407 2.076863 GACCAACAAATCAGGACCGAG 58.923 52.381 0.00 0.00 0.00 4.63
2250 2408 1.271163 GGACCAACAAATCAGGACCGA 60.271 52.381 0.00 0.00 0.00 4.69
2251 2409 1.165270 GGACCAACAAATCAGGACCG 58.835 55.000 0.00 0.00 0.00 4.79
2252 2410 1.075536 AGGGACCAACAAATCAGGACC 59.924 52.381 0.00 0.00 36.67 4.46
2253 2411 2.586648 AGGGACCAACAAATCAGGAC 57.413 50.000 0.00 0.00 0.00 3.85
2254 2412 4.946160 AATAGGGACCAACAAATCAGGA 57.054 40.909 0.00 0.00 0.00 3.86
2255 2413 8.940397 ATTATAATAGGGACCAACAAATCAGG 57.060 34.615 0.00 0.00 0.00 3.86
2256 2414 9.799106 AGATTATAATAGGGACCAACAAATCAG 57.201 33.333 0.00 0.00 0.00 2.90
2257 2415 9.573166 CAGATTATAATAGGGACCAACAAATCA 57.427 33.333 0.00 0.00 0.00 2.57
2258 2416 9.574516 ACAGATTATAATAGGGACCAACAAATC 57.425 33.333 0.00 0.00 0.00 2.17
2259 2417 9.354673 CACAGATTATAATAGGGACCAACAAAT 57.645 33.333 0.00 0.00 0.00 2.32
2260 2418 7.284489 GCACAGATTATAATAGGGACCAACAAA 59.716 37.037 0.00 0.00 0.00 2.83
2261 2419 6.770785 GCACAGATTATAATAGGGACCAACAA 59.229 38.462 0.00 0.00 0.00 2.83
2262 2420 6.296026 GCACAGATTATAATAGGGACCAACA 58.704 40.000 0.00 0.00 0.00 3.33
2263 2421 5.705905 GGCACAGATTATAATAGGGACCAAC 59.294 44.000 0.00 0.00 0.00 3.77
2264 2422 5.371176 TGGCACAGATTATAATAGGGACCAA 59.629 40.000 0.00 0.00 0.00 3.67
2265 2423 4.910913 TGGCACAGATTATAATAGGGACCA 59.089 41.667 0.00 5.18 0.00 4.02
2266 2424 5.499004 TGGCACAGATTATAATAGGGACC 57.501 43.478 0.00 2.92 0.00 4.46
2267 2425 6.998673 AGTTTGGCACAGATTATAATAGGGAC 59.001 38.462 0.00 0.00 42.39 4.46
2268 2426 7.149202 AGTTTGGCACAGATTATAATAGGGA 57.851 36.000 0.00 0.00 42.39 4.20
2269 2427 7.823745 AAGTTTGGCACAGATTATAATAGGG 57.176 36.000 0.00 0.00 42.39 3.53
2307 2465 9.740239 GATCACATGCATGAACATTTTATTAGT 57.260 29.630 32.75 2.07 30.82 2.24
2308 2466 9.961265 AGATCACATGCATGAACATTTTATTAG 57.039 29.630 32.75 1.29 30.82 1.73
2313 2471 9.661563 ATTTTAGATCACATGCATGAACATTTT 57.338 25.926 32.75 13.43 30.82 1.82
2314 2472 9.661563 AATTTTAGATCACATGCATGAACATTT 57.338 25.926 32.75 16.81 30.82 2.32
2350 2508 9.912634 CTTGGATTTGTATTTGAACATAGTGTT 57.087 29.630 0.00 0.00 44.37 3.32
2351 2509 8.522830 CCTTGGATTTGTATTTGAACATAGTGT 58.477 33.333 0.00 0.00 0.00 3.55
2352 2510 8.739039 TCCTTGGATTTGTATTTGAACATAGTG 58.261 33.333 0.00 0.00 0.00 2.74
2353 2511 8.877864 TCCTTGGATTTGTATTTGAACATAGT 57.122 30.769 0.00 0.00 0.00 2.12
2369 2527 9.844257 TGTCAACAAAAATTAAATCCTTGGATT 57.156 25.926 8.94 8.94 0.00 3.01
2371 2529 9.270640 CATGTCAACAAAAATTAAATCCTTGGA 57.729 29.630 0.00 0.00 0.00 3.53
2372 2530 8.016801 GCATGTCAACAAAAATTAAATCCTTGG 58.983 33.333 0.00 0.00 0.00 3.61
2373 2531 8.557864 TGCATGTCAACAAAAATTAAATCCTTG 58.442 29.630 0.00 0.00 0.00 3.61
2374 2532 8.558700 GTGCATGTCAACAAAAATTAAATCCTT 58.441 29.630 0.00 0.00 0.00 3.36
2375 2533 7.933033 AGTGCATGTCAACAAAAATTAAATCCT 59.067 29.630 0.00 0.00 0.00 3.24
2376 2534 8.086851 AGTGCATGTCAACAAAAATTAAATCC 57.913 30.769 0.00 0.00 0.00 3.01
2379 2537 9.371136 TGTTAGTGCATGTCAACAAAAATTAAA 57.629 25.926 0.00 0.00 0.00 1.52
2380 2538 8.932945 TGTTAGTGCATGTCAACAAAAATTAA 57.067 26.923 0.00 0.00 0.00 1.40
2381 2539 9.539825 AATGTTAGTGCATGTCAACAAAAATTA 57.460 25.926 8.71 0.00 34.79 1.40
2382 2540 8.436046 AATGTTAGTGCATGTCAACAAAAATT 57.564 26.923 8.71 0.00 34.79 1.82
2383 2541 8.436046 AAATGTTAGTGCATGTCAACAAAAAT 57.564 26.923 8.71 0.00 34.79 1.82
2384 2542 7.840342 AAATGTTAGTGCATGTCAACAAAAA 57.160 28.000 8.71 0.00 34.79 1.94
2385 2543 7.840342 AAAATGTTAGTGCATGTCAACAAAA 57.160 28.000 8.71 0.00 34.79 2.44
2386 2544 9.190858 GATAAAATGTTAGTGCATGTCAACAAA 57.809 29.630 8.71 0.00 34.79 2.83
2387 2545 8.355913 TGATAAAATGTTAGTGCATGTCAACAA 58.644 29.630 8.71 0.00 34.79 2.83
2388 2546 7.880105 TGATAAAATGTTAGTGCATGTCAACA 58.120 30.769 0.00 0.00 35.53 3.33
2389 2547 8.023128 ACTGATAAAATGTTAGTGCATGTCAAC 58.977 33.333 0.00 0.00 0.00 3.18
2390 2548 8.109705 ACTGATAAAATGTTAGTGCATGTCAA 57.890 30.769 0.00 0.00 0.00 3.18
2391 2549 7.686438 ACTGATAAAATGTTAGTGCATGTCA 57.314 32.000 0.00 0.00 0.00 3.58
2430 2588 9.884636 GTCCCCTTTGTAATTTATGCTAAATTT 57.115 29.630 14.76 0.00 32.64 1.82
2431 2589 9.267071 AGTCCCCTTTGTAATTTATGCTAAATT 57.733 29.630 14.27 14.27 34.55 1.82
2432 2590 8.838649 AGTCCCCTTTGTAATTTATGCTAAAT 57.161 30.769 0.00 0.00 0.00 1.40
2433 2591 9.756571 TTAGTCCCCTTTGTAATTTATGCTAAA 57.243 29.630 0.00 0.00 0.00 1.85
2434 2592 9.930158 ATTAGTCCCCTTTGTAATTTATGCTAA 57.070 29.630 0.00 0.00 0.00 3.09
2436 2594 9.930158 TTATTAGTCCCCTTTGTAATTTATGCT 57.070 29.630 0.00 0.00 0.00 3.79
2442 2600 9.916360 CCTAGTTTATTAGTCCCCTTTGTAATT 57.084 33.333 0.00 0.00 0.00 1.40
2443 2601 9.287818 TCCTAGTTTATTAGTCCCCTTTGTAAT 57.712 33.333 0.00 0.00 0.00 1.89
2444 2602 8.542926 GTCCTAGTTTATTAGTCCCCTTTGTAA 58.457 37.037 0.00 0.00 0.00 2.41
2445 2603 7.147846 CGTCCTAGTTTATTAGTCCCCTTTGTA 60.148 40.741 0.00 0.00 0.00 2.41
2446 2604 6.351626 CGTCCTAGTTTATTAGTCCCCTTTGT 60.352 42.308 0.00 0.00 0.00 2.83
2447 2605 6.047231 CGTCCTAGTTTATTAGTCCCCTTTG 58.953 44.000 0.00 0.00 0.00 2.77
2448 2606 5.129980 CCGTCCTAGTTTATTAGTCCCCTTT 59.870 44.000 0.00 0.00 0.00 3.11
2449 2607 4.652881 CCGTCCTAGTTTATTAGTCCCCTT 59.347 45.833 0.00 0.00 0.00 3.95
2450 2608 4.078980 TCCGTCCTAGTTTATTAGTCCCCT 60.079 45.833 0.00 0.00 0.00 4.79
2451 2609 4.218312 TCCGTCCTAGTTTATTAGTCCCC 58.782 47.826 0.00 0.00 0.00 4.81
2452 2610 4.280425 CCTCCGTCCTAGTTTATTAGTCCC 59.720 50.000 0.00 0.00 0.00 4.46
2453 2611 4.892345 ACCTCCGTCCTAGTTTATTAGTCC 59.108 45.833 0.00 0.00 0.00 3.85
2454 2612 6.770303 ACTACCTCCGTCCTAGTTTATTAGTC 59.230 42.308 0.00 0.00 0.00 2.59
2455 2613 6.667661 ACTACCTCCGTCCTAGTTTATTAGT 58.332 40.000 0.00 0.00 0.00 2.24
2456 2614 7.936301 AGTACTACCTCCGTCCTAGTTTATTAG 59.064 40.741 0.00 0.00 0.00 1.73
2457 2615 7.806180 AGTACTACCTCCGTCCTAGTTTATTA 58.194 38.462 0.00 0.00 0.00 0.98
2458 2616 6.667661 AGTACTACCTCCGTCCTAGTTTATT 58.332 40.000 0.00 0.00 0.00 1.40
2459 2617 6.259346 AGTACTACCTCCGTCCTAGTTTAT 57.741 41.667 0.00 0.00 0.00 1.40
2460 2618 5.700402 AGTACTACCTCCGTCCTAGTTTA 57.300 43.478 0.00 0.00 0.00 2.01
2461 2619 4.582973 AGTACTACCTCCGTCCTAGTTT 57.417 45.455 0.00 0.00 0.00 2.66
2462 2620 4.719273 ACTAGTACTACCTCCGTCCTAGTT 59.281 45.833 0.00 0.00 32.00 2.24
2463 2621 4.294347 ACTAGTACTACCTCCGTCCTAGT 58.706 47.826 0.00 0.00 31.33 2.57
2464 2622 4.953940 ACTAGTACTACCTCCGTCCTAG 57.046 50.000 0.00 0.00 0.00 3.02
2465 2623 5.706447 TCTACTAGTACTACCTCCGTCCTA 58.294 45.833 0.00 0.00 0.00 2.94
2466 2624 4.551671 TCTACTAGTACTACCTCCGTCCT 58.448 47.826 0.00 0.00 0.00 3.85
2467 2625 4.946478 TCTACTAGTACTACCTCCGTCC 57.054 50.000 0.00 0.00 0.00 4.79
2468 2626 6.155475 TCTTCTACTAGTACTACCTCCGTC 57.845 45.833 0.00 0.00 0.00 4.79
2469 2627 6.552445 TTCTTCTACTAGTACTACCTCCGT 57.448 41.667 0.00 0.00 0.00 4.69
2470 2628 6.991531 ACATTCTTCTACTAGTACTACCTCCG 59.008 42.308 0.00 0.00 0.00 4.63
2471 2629 8.750515 AACATTCTTCTACTAGTACTACCTCC 57.249 38.462 0.00 0.00 0.00 4.30
2473 2631 9.531158 ACAAACATTCTTCTACTAGTACTACCT 57.469 33.333 0.00 0.00 0.00 3.08
2493 2651 7.940137 ACTGTATTTACCCTCATGTTACAAACA 59.060 33.333 0.00 0.00 46.94 2.83
2494 2652 8.331730 ACTGTATTTACCCTCATGTTACAAAC 57.668 34.615 0.00 0.00 0.00 2.93
2504 2662 5.163385 CCCGACAATACTGTATTTACCCTCA 60.163 44.000 10.25 0.00 35.30 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.