AutoCloner

Multiple sequence alignment - TraesCS5B01G472400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G472400	chr5B	100.000	2834	0	0	1	2834	645993948	645991115	0.000000e+00	5234.0
1	TraesCS5B01G472400	chr5B	84.561	2131	229	40	564	2618	646266505	646268611	0.000000e+00	2021.0
2	TraesCS5B01G472400	chr5B	99.697	989	2	1	1033	2021	645981257	645980270	0.000000e+00	1808.0
3	TraesCS5B01G472400	chr5B	84.197	1196	186	3	761	1955	646376140	646377333	0.000000e+00	1158.0
4	TraesCS5B01G472400	chr5B	83.736	1199	192	3	761	1958	645557560	645556364	0.000000e+00	1131.0
5	TraesCS5B01G472400	chr5B	82.775	1254	202	9	752	2003	646229857	646231098	0.000000e+00	1107.0
6	TraesCS5B01G472400	chr5B	88.701	354	40	0	1763	2116	646627992	646628345	1.560000e-117	433.0
7	TraesCS5B01G472400	chr5A	94.627	2643	112	17	1	2636	642501979	642504598	0.000000e+00	4067.0
8	TraesCS5B01G472400	chr5A	90.909	176	2	1	2673	2834	642504602	642504777	1.020000e-54	224.0
9	TraesCS5B01G472400	chr5A	87.143	70	8	1	1	70	594413535	594413603	8.420000e-11	78.7
10	TraesCS5B01G472400	chr5A	92.857	42	2	1	2585	2625	642713498	642713539	3.050000e-05	60.2
11	TraesCS5B01G472400	chr5D	91.508	2308	137	26	364	2623	514294227	514296523	0.000000e+00	3121.0
12	TraesCS5B01G472400	chr5D	83.958	1253	185	11	763	2006	514412824	514411579	0.000000e+00	1186.0
13	TraesCS5B01G472400	chr5D	84.303	1083	159	10	662	1741	514515119	514516193	0.000000e+00	1048.0
14	TraesCS5B01G472400	chr5D	92.059	340	23	4	1	337	514293897	514294235	2.550000e-130	475.0
15	TraesCS5B01G472400	chr5D	88.184	347	41	0	1763	2109	514516185	514516531	5.650000e-112	414.0
16	TraesCS5B01G472400	chr5D	81.545	233	29	4	3	233	543671410	543671190	2.240000e-41	180.0
17	TraesCS5B01G472400	chr5D	80.916	131	13	7	22	142	543615249	543615121	3.010000e-15	93.5
18	TraesCS5B01G472400	chr6B	80.818	318	39	19	4	305	30128095	30127784	2.200000e-56	230.0
19	TraesCS5B01G472400	chr6B	81.884	276	39	7	17	281	230662258	230662533	3.670000e-54	222.0
20	TraesCS5B01G472400	chr2D	80.667	300	39	12	1	284	112552389	112552685	6.150000e-52	215.0
21	TraesCS5B01G472400	chr7D	81.226	261	38	5	7	256	168727323	168727583	1.720000e-47	200.0
22	TraesCS5B01G472400	chr3B	78.201	289	48	9	3	280	147490922	147491206	1.350000e-38	171.0
23	TraesCS5B01G472400	chr2A	78.761	226	39	5	30	247	618042550	618042774	2.940000e-30	143.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G472400	chr5B	645991115	645993948	2833	True	5234.0	5234	100.0000	1	2834	1	chr5B.!!$R3	2833
1	TraesCS5B01G472400	chr5B	646266505	646268611	2106	False	2021.0	2021	84.5610	564	2618	1	chr5B.!!$F2	2054
2	TraesCS5B01G472400	chr5B	645980270	645981257	987	True	1808.0	1808	99.6970	1033	2021	1	chr5B.!!$R2	988
3	TraesCS5B01G472400	chr5B	646376140	646377333	1193	False	1158.0	1158	84.1970	761	1955	1	chr5B.!!$F3	1194
4	TraesCS5B01G472400	chr5B	645556364	645557560	1196	True	1131.0	1131	83.7360	761	1958	1	chr5B.!!$R1	1197
5	TraesCS5B01G472400	chr5B	646229857	646231098	1241	False	1107.0	1107	82.7750	752	2003	1	chr5B.!!$F1	1251
6	TraesCS5B01G472400	chr5A	642501979	642504777	2798	False	2145.5	4067	92.7680	1	2834	2	chr5A.!!$F3	2833
7	TraesCS5B01G472400	chr5D	514293897	514296523	2626	False	1798.0	3121	91.7835	1	2623	2	chr5D.!!$F1	2622
8	TraesCS5B01G472400	chr5D	514411579	514412824	1245	True	1186.0	1186	83.9580	763	2006	1	chr5D.!!$R1	1243
9	TraesCS5B01G472400	chr5D	514515119	514516531	1412	False	731.0	1048	86.2435	662	2109	2	chr5D.!!$F2	1447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
341	346	0.03496	TCGGATTTTCGATTGGCCCA	60.035	50.0	0.0	0.0	33.92	5.36	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2082	2125	2.606308	GCTCAACAAAGGATGCACACAG	60.606	50.0	0.0	0.0	0.0	3.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	8.532977	AAAATATAATTCTGCAACAACACCAC	57.467	30.769	0.00	0.00	0.00	4.16
58	59	0.392863	TGTCCTCCCGCAACATCATG	60.393	55.000	0.00	0.00	0.00	3.07
176	179	4.326826	TCTACCTTGTTGCAATTCCTCAG	58.673	43.478	0.59	0.00	0.00	3.35
228	232	0.807275	TGCCTGAATCTGATGACGCG	60.807	55.000	3.53	3.53	0.00	6.01
256	260	3.308866	CGGCGGATCTTTTAAAACGATCT	59.691	43.478	24.09	6.71	35.18	2.75
259	263	5.470845	CGGATCTTTTAAAACGATCTGCT	57.529	39.130	24.09	5.76	34.78	4.24
332	337	8.911247	AATTTCCTAGATTTTTCGGATTTTCG	57.089	30.769	0.00	0.00	0.00	3.46
341	346	0.034960	TCGGATTTTCGATTGGCCCA	60.035	50.000	0.00	0.00	33.92	5.36
391	398	3.303938	TGAGATTTTGTTTTCTGGGCCA	58.696	40.909	5.85	5.85	0.00	5.36
412	419	4.714308	CCATTTTATAGACAGGGCCCAAAA	59.286	41.667	27.56	19.66	0.00	2.44
483	493	6.799512	TCTAGCGTTCCTATAACCAACTAAC	58.200	40.000	0.00	0.00	0.00	2.34
485	495	4.223477	AGCGTTCCTATAACCAACTAACCA	59.777	41.667	0.00	0.00	0.00	3.67
486	496	4.937015	GCGTTCCTATAACCAACTAACCAA	59.063	41.667	0.00	0.00	0.00	3.67
487	497	5.412286	GCGTTCCTATAACCAACTAACCAAA	59.588	40.000	0.00	0.00	0.00	3.28
488	498	6.072563	GCGTTCCTATAACCAACTAACCAAAA	60.073	38.462	0.00	0.00	0.00	2.44
489	499	7.521910	GCGTTCCTATAACCAACTAACCAAAAA	60.522	37.037	0.00	0.00	0.00	1.94
491	501	8.631797	GTTCCTATAACCAACTAACCAAAAACA	58.368	33.333	0.00	0.00	0.00	2.83
492	502	8.398878	TCCTATAACCAACTAACCAAAAACAG	57.601	34.615	0.00	0.00	0.00	3.16
493	503	8.000127	TCCTATAACCAACTAACCAAAAACAGT	59.000	33.333	0.00	0.00	0.00	3.55
496	506	4.989044	ACCAACTAACCAAAAACAGTTCG	58.011	39.130	0.00	0.00	0.00	3.95
497	507	3.794564	CCAACTAACCAAAAACAGTTCGC	59.205	43.478	0.00	0.00	0.00	4.70
498	508	4.439563	CCAACTAACCAAAAACAGTTCGCT	60.440	41.667	0.00	0.00	0.00	4.93
499	509	5.220892	CCAACTAACCAAAAACAGTTCGCTA	60.221	40.000	0.00	0.00	0.00	4.26
500	510	5.668558	ACTAACCAAAAACAGTTCGCTAG	57.331	39.130	0.00	0.00	0.00	3.42
501	511	3.349488	AACCAAAAACAGTTCGCTAGC	57.651	42.857	4.06	4.06	0.00	3.42
502	512	2.572290	ACCAAAAACAGTTCGCTAGCT	58.428	42.857	13.93	0.00	0.00	3.32
522	532	3.618997	GCTTCTGTTTCTATCCGGTTCCA	60.619	47.826	0.00	0.00	0.00	3.53
589	600	5.605534	CGGTTTCATCTCCATACTCATCTT	58.394	41.667	0.00	0.00	0.00	2.40
660	672	2.487986	CCCTGTGTTGCTTCTCTTTCCT	60.488	50.000	0.00	0.00	0.00	3.36
664	676	4.130118	TGTGTTGCTTCTCTTTCCTTCTC	58.870	43.478	0.00	0.00	0.00	2.87
669	681	5.053978	TGCTTCTCTTTCCTTCTCCTTTT	57.946	39.130	0.00	0.00	0.00	2.27
675	687	4.137543	TCTTTCCTTCTCCTTTTCACTGC	58.862	43.478	0.00	0.00	0.00	4.40
685	697	6.403049	TCTCCTTTTCACTGCGATTAATACA	58.597	36.000	0.00	0.00	0.00	2.29
693	705	6.170506	TCACTGCGATTAATACACCTTTTCT	58.829	36.000	0.00	0.00	0.00	2.52
715	727	6.296026	TCTTTTAACACCAGCAGATTAGTGT	58.704	36.000	0.00	0.00	45.02	3.55
798	812	5.292101	CCAGATGAAAACATCTAAGACGGTC	59.708	44.000	11.52	0.00	39.69	4.79
1808	1840	3.501828	CCATCTTTCGTTGTGGATGAACA	59.498	43.478	0.00	0.00	38.14	3.18
1812	1844	1.052617	TCGTTGTGGATGAACAGGGA	58.947	50.000	0.00	0.00	0.00	4.20
2048	2089	3.578716	AGTGCTTCTCTGCTACCTGTAAA	59.421	43.478	0.00	0.00	0.00	2.01
2051	2092	3.368236	GCTTCTCTGCTACCTGTAAAACG	59.632	47.826	0.00	0.00	0.00	3.60
2091	2134	2.107204	AGAAGTTCCTTCCTGTGTGCAT	59.893	45.455	0.00	0.00	40.98	3.96
2432	2506	4.514441	AGTGCAGAGACATTTTCACTTCTG	59.486	41.667	0.00	0.00	31.51	3.02
2491	2571	1.738700	GCAAGCTGTAGGTCAGAGAGC	60.739	57.143	0.00	0.00	46.27	4.09
2494	2590	0.811915	GCTGTAGGTCAGAGAGCGAA	59.188	55.000	0.00	0.00	46.27	4.70
2508	2607	7.327032	GTCAGAGAGCGAAAATTTTGCTTATTT	59.673	33.333	20.23	8.07	39.49	1.40
2627	2732	0.107456	AGTTGGTCACAGCCTCACAG	59.893	55.000	0.00	0.00	0.00	3.66
2638	2743	2.202987	CTCACAGGCCTGATCCGC	60.203	66.667	39.19	0.00	0.00	5.54
2639	2744	4.147449	TCACAGGCCTGATCCGCG	62.147	66.667	39.19	18.15	0.00	6.46
2640	2745	4.457496	CACAGGCCTGATCCGCGT	62.457	66.667	39.19	12.29	0.00	6.01
2641	2746	4.148825	ACAGGCCTGATCCGCGTC	62.149	66.667	39.19	0.00	0.00	5.19
2642	2747	4.147449	CAGGCCTGATCCGCGTCA	62.147	66.667	29.88	1.62	0.00	4.35
2643	2748	4.148825	AGGCCTGATCCGCGTCAC	62.149	66.667	3.11	0.00	0.00	3.67
2646	2751	4.530857	CCTGATCCGCGTCACCCC	62.531	72.222	4.92	0.00	0.00	4.95
2647	2752	3.770040	CTGATCCGCGTCACCCCA	61.770	66.667	4.92	0.00	0.00	4.96
2648	2753	4.077184	TGATCCGCGTCACCCCAC	62.077	66.667	4.92	0.00	0.00	4.61
2649	2754	4.077184	GATCCGCGTCACCCCACA	62.077	66.667	4.92	0.00	0.00	4.17
2650	2755	4.388499	ATCCGCGTCACCCCACAC	62.388	66.667	4.92	0.00	0.00	3.82
2652	2757	4.920112	CCGCGTCACCCCACACAA	62.920	66.667	4.92	0.00	0.00	3.33
2653	2758	3.645975	CGCGTCACCCCACACAAC	61.646	66.667	0.00	0.00	0.00	3.32
2654	2759	3.284449	GCGTCACCCCACACAACC	61.284	66.667	0.00	0.00	0.00	3.77
2655	2760	2.190843	CGTCACCCCACACAACCA	59.809	61.111	0.00	0.00	0.00	3.67
2656	2761	1.452289	CGTCACCCCACACAACCAA	60.452	57.895	0.00	0.00	0.00	3.67
2657	2762	1.720694	CGTCACCCCACACAACCAAC	61.721	60.000	0.00	0.00	0.00	3.77
2658	2763	0.395173	GTCACCCCACACAACCAACT	60.395	55.000	0.00	0.00	0.00	3.16
2659	2764	0.333312	TCACCCCACACAACCAACTT	59.667	50.000	0.00	0.00	0.00	2.66
2660	2765	0.459489	CACCCCACACAACCAACTTG	59.541	55.000	0.00	0.00	35.77	3.16
2661	2766	0.040499	ACCCCACACAACCAACTTGT	59.960	50.000	0.00	0.00	44.51	3.16
2662	2767	1.190643	CCCCACACAACCAACTTGTT	58.809	50.000	0.00	0.00	41.50	2.83
2663	2768	1.552792	CCCCACACAACCAACTTGTTT	59.447	47.619	0.00	0.00	41.50	2.83
2664	2769	2.761208	CCCCACACAACCAACTTGTTTA	59.239	45.455	0.00	0.00	41.50	2.01
2665	2770	3.195825	CCCCACACAACCAACTTGTTTAA	59.804	43.478	0.00	0.00	41.50	1.52
2666	2771	4.141824	CCCCACACAACCAACTTGTTTAAT	60.142	41.667	0.00	0.00	41.50	1.40
2667	2772	5.423886	CCCACACAACCAACTTGTTTAATT	58.576	37.500	0.00	0.00	41.50	1.40
2668	2773	5.877564	CCCACACAACCAACTTGTTTAATTT	59.122	36.000	0.00	0.00	41.50	1.82
2669	2774	6.183360	CCCACACAACCAACTTGTTTAATTTG	60.183	38.462	0.00	0.00	41.50	2.32
2670	2775	6.370166	CCACACAACCAACTTGTTTAATTTGT	59.630	34.615	0.00	0.00	41.50	2.83
2671	2776	7.412455	CCACACAACCAACTTGTTTAATTTGTC	60.412	37.037	0.00	0.00	41.50	3.18
2775	2894	3.854459	GCGTCAGGCTTGTAGCGC	61.854	66.667	15.56	15.56	43.62	5.92

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	5.767665	ACAGTGGTGTTGTTGCAGAATTATA	59.232	36.000	0.00	0.00	30.30	0.98
29	30	0.523072	CGGGAGGACAATTGCAACAG	59.477	55.000	0.00	0.00	0.00	3.16
38	39	0.327924	ATGATGTTGCGGGAGGACAA	59.672	50.000	0.00	0.00	0.00	3.18
58	59	7.518731	TTCTTCAACTTTGTTTGCAACATAC	57.481	32.000	0.00	0.00	41.79	2.39
99	101	3.976169	TGCAAAACCACTGAAGCATTAC	58.024	40.909	0.00	0.00	0.00	1.89
176	179	1.152881	ATCTCCCAAATGAGGCGCC	60.153	57.895	21.89	21.89	33.04	6.53
214	218	0.598680	CCTCCCGCGTCATCAGATTC	60.599	60.000	4.92	0.00	0.00	2.52
228	232	2.319890	TAAAAGATCCGCCGCCTCCC	62.320	60.000	0.00	0.00	0.00	4.30
238	242	5.030936	GCAGCAGATCGTTTTAAAAGATCC	58.969	41.667	22.96	13.04	41.06	3.36
242	246	4.159377	TGGCAGCAGATCGTTTTAAAAG	57.841	40.909	0.00	0.00	0.00	2.27
391	398	5.425217	CCTTTTTGGGCCCTGTCTATAAAAT	59.575	40.000	25.70	0.00	0.00	1.82
412	419	3.239253	AACGTCCCAGCGACCCTT	61.239	61.111	0.00	0.00	38.36	3.95
469	479	9.673454	GAACTGTTTTTGGTTAGTTGGTTATAG	57.327	33.333	0.00	0.00	33.83	1.31
483	493	3.251004	AGAAGCTAGCGAACTGTTTTTGG	59.749	43.478	9.55	0.00	0.00	3.28
485	495	3.877508	ACAGAAGCTAGCGAACTGTTTTT	59.122	39.130	26.28	8.70	38.41	1.94
486	496	3.467803	ACAGAAGCTAGCGAACTGTTTT	58.532	40.909	26.28	9.31	38.41	2.43
487	497	3.113260	ACAGAAGCTAGCGAACTGTTT	57.887	42.857	26.28	9.93	38.41	2.83
488	498	2.821991	ACAGAAGCTAGCGAACTGTT	57.178	45.000	26.28	16.57	38.41	3.16
489	499	2.821991	AACAGAAGCTAGCGAACTGT	57.178	45.000	26.28	26.28	42.40	3.55
491	501	3.669251	AGAAACAGAAGCTAGCGAACT	57.331	42.857	9.55	7.28	0.00	3.01
492	502	4.504826	GGATAGAAACAGAAGCTAGCGAAC	59.495	45.833	9.55	4.94	0.00	3.95
493	503	4.683832	GGATAGAAACAGAAGCTAGCGAA	58.316	43.478	9.55	0.00	0.00	4.70
496	506	3.181474	ACCGGATAGAAACAGAAGCTAGC	60.181	47.826	9.46	6.62	0.00	3.42
497	507	4.657436	ACCGGATAGAAACAGAAGCTAG	57.343	45.455	9.46	0.00	0.00	3.42
498	508	4.142004	GGAACCGGATAGAAACAGAAGCTA	60.142	45.833	9.46	0.00	0.00	3.32
499	509	3.369576	GGAACCGGATAGAAACAGAAGCT	60.370	47.826	9.46	0.00	0.00	3.74
500	510	2.937149	GGAACCGGATAGAAACAGAAGC	59.063	50.000	9.46	0.00	0.00	3.86
501	511	4.202245	TGGAACCGGATAGAAACAGAAG	57.798	45.455	9.46	0.00	0.00	2.85
502	512	4.837093	ATGGAACCGGATAGAAACAGAA	57.163	40.909	9.46	0.00	0.00	3.02
566	576	5.207110	AGATGAGTATGGAGATGAAACCG	57.793	43.478	0.00	0.00	0.00	4.44
641	653	4.133078	AGAAGGAAAGAGAAGCAACACAG	58.867	43.478	0.00	0.00	0.00	3.66
646	658	4.713792	AAGGAGAAGGAAAGAGAAGCAA	57.286	40.909	0.00	0.00	0.00	3.91
660	672	6.876789	TGTATTAATCGCAGTGAAAAGGAGAA	59.123	34.615	0.00	0.00	0.00	2.87
664	676	5.354234	AGGTGTATTAATCGCAGTGAAAAGG	59.646	40.000	0.00	0.00	0.00	3.11
669	681	6.170506	AGAAAAGGTGTATTAATCGCAGTGA	58.829	36.000	0.00	0.00	0.00	3.41
685	697	4.953579	TCTGCTGGTGTTAAAAGAAAAGGT	59.046	37.500	0.00	0.00	0.00	3.50
693	705	5.278266	GCACACTAATCTGCTGGTGTTAAAA	60.278	40.000	0.00	0.00	40.34	1.52
798	812	1.598962	CAGTGGGGTGCACACAGAG	60.599	63.158	22.94	9.34	41.21	3.35
1808	1840	5.388599	TGAAAACTTCCTTCTCTTTCCCT	57.611	39.130	0.00	0.00	0.00	4.20
1812	1844	6.322201	TGCTTCATGAAAACTTCCTTCTCTTT	59.678	34.615	9.88	0.00	0.00	2.52
2082	2125	2.606308	GCTCAACAAAGGATGCACACAG	60.606	50.000	0.00	0.00	0.00	3.66
2454	2534	6.547141	ACAGCTTGCTTCTATAATGCCATTTA	59.453	34.615	0.00	0.00	0.00	1.40
2491	2571	9.604626	TGCCAATTTAAATAAGCAAAATTTTCG	57.395	25.926	17.98	0.00	32.05	3.46
2508	2607	8.780846	TTCGTTCTATAAGACTTGCCAATTTA	57.219	30.769	0.00	0.00	0.00	1.40
2638	2743	1.452289	TTGGTTGTGTGGGGTGACG	60.452	57.895	0.00	0.00	0.00	4.35
2639	2744	0.395173	AGTTGGTTGTGTGGGGTGAC	60.395	55.000	0.00	0.00	0.00	3.67
2640	2745	0.333312	AAGTTGGTTGTGTGGGGTGA	59.667	50.000	0.00	0.00	0.00	4.02
2641	2746	0.459489	CAAGTTGGTTGTGTGGGGTG	59.541	55.000	0.00	0.00	0.00	4.61
2642	2747	2.894858	CAAGTTGGTTGTGTGGGGT	58.105	52.632	0.00	0.00	0.00	4.95
2650	2755	8.167985	CACTTGACAAATTAAACAAGTTGGTTG	58.832	33.333	16.55	2.10	46.69	3.77
2651	2756	7.148490	GCACTTGACAAATTAAACAAGTTGGTT	60.148	33.333	11.61	11.61	46.69	3.67
2652	2757	6.312672	GCACTTGACAAATTAAACAAGTTGGT	59.687	34.615	16.09	0.00	46.69	3.67
2653	2758	6.312426	TGCACTTGACAAATTAAACAAGTTGG	59.688	34.615	16.09	10.44	46.69	3.77
2654	2759	7.288317	TGCACTTGACAAATTAAACAAGTTG	57.712	32.000	16.09	0.00	46.69	3.16
2655	2760	6.534793	CCTGCACTTGACAAATTAAACAAGTT	59.465	34.615	16.09	5.30	46.69	2.66
2657	2762	6.019640	CACCTGCACTTGACAAATTAAACAAG	60.020	38.462	13.23	13.23	43.30	3.16
2658	2763	5.809562	CACCTGCACTTGACAAATTAAACAA	59.190	36.000	0.00	0.00	0.00	2.83
2659	2764	5.347342	CACCTGCACTTGACAAATTAAACA	58.653	37.500	0.00	0.00	0.00	2.83
2660	2765	4.209080	GCACCTGCACTTGACAAATTAAAC	59.791	41.667	0.00	0.00	41.59	2.01
2661	2766	4.099266	AGCACCTGCACTTGACAAATTAAA	59.901	37.500	0.00	0.00	45.16	1.52
2662	2767	3.636300	AGCACCTGCACTTGACAAATTAA	59.364	39.130	0.00	0.00	45.16	1.40
2663	2768	3.221771	AGCACCTGCACTTGACAAATTA	58.778	40.909	0.00	0.00	45.16	1.40
2664	2769	2.034124	AGCACCTGCACTTGACAAATT	58.966	42.857	0.00	0.00	45.16	1.82
2665	2770	1.610522	GAGCACCTGCACTTGACAAAT	59.389	47.619	0.00	0.00	45.16	2.32
2666	2771	1.024271	GAGCACCTGCACTTGACAAA	58.976	50.000	0.00	0.00	45.16	2.83
2667	2772	0.819259	GGAGCACCTGCACTTGACAA	60.819	55.000	0.00	0.00	45.16	3.18
2668	2773	1.227943	GGAGCACCTGCACTTGACA	60.228	57.895	0.00	0.00	45.16	3.58
2669	2774	1.968540	GGGAGCACCTGCACTTGAC	60.969	63.158	0.00	0.00	45.16	3.18
2670	2775	2.401699	CTGGGAGCACCTGCACTTGA	62.402	60.000	0.00	0.00	45.16	3.02
2671	2776	1.970114	CTGGGAGCACCTGCACTTG	60.970	63.158	0.00	0.00	45.16	3.16
2746	2865	1.651240	CCTGACGCAAAGGCATGGAG	61.651	60.000	0.00	0.00	37.16	3.86
2775	2894	8.393366	CAACACATACTATTGAACTTCTCCATG	58.607	37.037	0.00	0.00	0.00	3.66

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.