Multiple sequence alignment - TraesCS5B01G472100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G472100 chr5B 100.000 2812 0 0 818 3629 645558004 645555193 0.000000e+00 5193
1 TraesCS5B01G472100 chr5B 95.177 1949 46 15 820 2728 646375665 646377605 0.000000e+00 3035
2 TraesCS5B01G472100 chr5B 87.976 1314 143 13 1120 2430 646229733 646231034 0.000000e+00 1537
3 TraesCS5B01G472100 chr5B 100.000 624 0 0 1 624 645558821 645558198 0.000000e+00 1153
4 TraesCS5B01G472100 chr5B 83.736 1199 192 3 1262 2458 645993188 645991991 0.000000e+00 1131
5 TraesCS5B01G472100 chr5B 83.927 927 146 3 1533 2458 645981257 645980333 0.000000e+00 883
6 TraesCS5B01G472100 chr5B 95.768 449 18 1 1 449 61083075 61082628 0.000000e+00 723
7 TraesCS5B01G472100 chr5B 98.294 293 4 1 2969 3261 646378062 646378353 2.500000e-141 512
8 TraesCS5B01G472100 chr5B 84.916 358 41 8 34 387 616965928 616966276 2.070000e-92 350
9 TraesCS5B01G472100 chr5B 96.094 128 4 1 450 577 646375577 646375703 1.320000e-49 207
10 TraesCS5B01G472100 chr5B 96.330 109 4 0 2714 2822 646377957 646378065 2.880000e-41 180
11 TraesCS5B01G472100 chr5B 93.478 92 6 0 359 450 616966275 616966366 1.760000e-28 137
12 TraesCS5B01G472100 chr5B 97.436 78 2 0 3552 3629 646378363 646378440 2.270000e-27 134
13 TraesCS5B01G472100 chr5B 94.737 76 2 1 537 610 645558004 645557929 2.290000e-22 117
14 TraesCS5B01G472100 chr5B 94.737 76 2 1 818 893 645558285 645558212 2.290000e-22 117
15 TraesCS5B01G472100 chr5B 85.047 107 5 3 900 995 646229540 646229646 8.290000e-17 99
16 TraesCS5B01G472100 chr5D 93.393 1801 92 9 1040 2816 514423999 514425796 0.000000e+00 2641
17 TraesCS5B01G472100 chr5D 86.379 1439 164 19 1036 2466 514413041 514411627 0.000000e+00 1543
18 TraesCS5B01G472100 chr5D 84.365 1196 183 4 1262 2455 514294622 514295815 0.000000e+00 1170
19 TraesCS5B01G472100 chr5D 96.375 662 23 1 2969 3629 514425799 514426460 0.000000e+00 1088
20 TraesCS5B01G472100 chr5D 85.890 978 137 1 1268 2245 514515220 514516196 0.000000e+00 1040
21 TraesCS5B01G472100 chr5D 95.683 139 5 1 2835 2973 521027268 521027131 4.720000e-54 222
22 TraesCS5B01G472100 chr5A 83.866 1190 187 5 1262 2448 642502735 642503922 0.000000e+00 1129
23 TraesCS5B01G472100 chr3B 88.117 446 20 13 34 451 700780628 700781068 1.950000e-137 499
24 TraesCS5B01G472100 chr2B 88.345 429 26 11 34 442 73297248 73296824 9.050000e-136 494
25 TraesCS5B01G472100 chr2B 94.175 309 16 2 34 342 484109947 484109641 1.530000e-128 470
26 TraesCS5B01G472100 chr2B 91.241 137 8 3 309 442 73296501 73296366 2.230000e-42 183
27 TraesCS5B01G472100 chr6D 80.529 416 51 19 17 425 61010302 61010694 3.540000e-75 292
28 TraesCS5B01G472100 chr7D 94.406 143 7 1 2832 2974 597300831 597300972 6.100000e-53 219
29 TraesCS5B01G472100 chr7D 93.750 144 8 1 2832 2975 39001312 39001454 7.890000e-52 215
30 TraesCS5B01G472100 chr4D 94.406 143 7 1 2832 2974 75782080 75782221 6.100000e-53 219
31 TraesCS5B01G472100 chr4D 92.667 150 8 3 2821 2970 476310383 476310237 2.840000e-51 213
32 TraesCS5B01G472100 chr1D 94.406 143 7 1 2832 2974 178466333 178466474 6.100000e-53 219
33 TraesCS5B01G472100 chr6B 93.793 145 8 1 2832 2976 211161506 211161649 2.190000e-52 217
34 TraesCS5B01G472100 chr6A 92.105 152 10 2 2832 2982 338087423 338087273 2.840000e-51 213
35 TraesCS5B01G472100 chr1A 92.053 151 9 3 2821 2970 537089624 537089772 3.670000e-50 209
36 TraesCS5B01G472100 chr3D 86.885 183 20 3 265 444 61934058 61933877 6.140000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G472100 chr5B 645555193 645558821 3628 True 1645.0 5193 97.3685 1 3629 4 chr5B.!!$R4 3628
1 TraesCS5B01G472100 chr5B 645991991 645993188 1197 True 1131.0 1131 83.7360 1262 2458 1 chr5B.!!$R3 1196
2 TraesCS5B01G472100 chr5B 645980333 645981257 924 True 883.0 883 83.9270 1533 2458 1 chr5B.!!$R2 925
3 TraesCS5B01G472100 chr5B 646229540 646231034 1494 False 818.0 1537 86.5115 900 2430 2 chr5B.!!$F2 1530
4 TraesCS5B01G472100 chr5B 646375577 646378440 2863 False 813.6 3035 96.6662 450 3629 5 chr5B.!!$F3 3179
5 TraesCS5B01G472100 chr5D 514423999 514426460 2461 False 1864.5 2641 94.8840 1040 3629 2 chr5D.!!$F3 2589
6 TraesCS5B01G472100 chr5D 514411627 514413041 1414 True 1543.0 1543 86.3790 1036 2466 1 chr5D.!!$R1 1430
7 TraesCS5B01G472100 chr5D 514294622 514295815 1193 False 1170.0 1170 84.3650 1262 2455 1 chr5D.!!$F1 1193
8 TraesCS5B01G472100 chr5D 514515220 514516196 976 False 1040.0 1040 85.8900 1268 2245 1 chr5D.!!$F2 977
9 TraesCS5B01G472100 chr5A 642502735 642503922 1187 False 1129.0 1129 83.8660 1262 2448 1 chr5A.!!$F1 1186
10 TraesCS5B01G472100 chr2B 73296366 73297248 882 True 338.5 494 89.7930 34 442 2 chr2B.!!$R2 408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.031857 CAAAGAAATGTGGTGGCGCA 59.968 50.0 10.83 0.0 0.00 6.09 F
291 292 0.038166 TTGTGAGGATGTTGGAGGGC 59.962 55.0 0.00 0.0 0.00 5.19 F
605 606 0.175760 ATCACGATTCGGTGTCCCTG 59.824 55.0 11.29 0.0 39.00 4.45 F
607 608 0.736325 CACGATTCGGTGTCCCTGTC 60.736 60.0 11.29 0.0 33.24 3.51 F
1266 1336 0.941542 TTTCGCCAAACGTCCTTCTG 59.058 50.0 0.00 0.0 44.19 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 1328 0.389166 CTCGTGACCAGCAGAAGGAC 60.389 60.000 0.00 0.0 0.00 3.85 R
1259 1329 0.539669 TCTCGTGACCAGCAGAAGGA 60.540 55.000 0.00 0.0 0.00 3.36 R
2123 2223 1.066858 TCCTTGTTCAGATCCTCGCAC 60.067 52.381 0.00 0.0 0.00 5.34 R
2332 2433 2.097142 CCTTTTGTAGCTGCTCATGCTC 59.903 50.000 4.91 0.0 41.46 4.26 R
3083 3551 1.133025 GAAATGGTTCACGGAGGCATG 59.867 52.381 0.00 0.0 33.61 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.643764 TCGATGAACTTTTCAAAACTGATGAAC 59.356 33.333 0.00 0.00 43.95 3.18
182 183 9.962783 ACGTATAATAGACTGGAATTGTCTTAC 57.037 33.333 2.59 0.07 41.45 2.34
183 184 9.961265 CGTATAATAGACTGGAATTGTCTTACA 57.039 33.333 2.59 0.00 41.45 2.41
215 216 5.923733 TTGTTGTAACAACAGGGTCAAAT 57.076 34.783 9.71 0.00 43.45 2.32
217 218 7.589958 TTGTTGTAACAACAGGGTCAAATAT 57.410 32.000 9.71 0.00 43.45 1.28
218 219 7.589958 TGTTGTAACAACAGGGTCAAATATT 57.410 32.000 1.68 0.00 35.67 1.28
219 220 7.429633 TGTTGTAACAACAGGGTCAAATATTG 58.570 34.615 1.68 0.00 35.67 1.90
220 221 7.068839 TGTTGTAACAACAGGGTCAAATATTGT 59.931 33.333 1.68 0.00 35.67 2.71
221 222 7.209471 TGTAACAACAGGGTCAAATATTGTC 57.791 36.000 0.00 0.00 30.26 3.18
222 223 7.001674 TGTAACAACAGGGTCAAATATTGTCT 58.998 34.615 0.00 0.00 30.26 3.41
223 224 6.976934 AACAACAGGGTCAAATATTGTCTT 57.023 33.333 0.00 0.00 30.26 3.01
224 225 6.331369 ACAACAGGGTCAAATATTGTCTTG 57.669 37.500 0.00 0.00 0.00 3.02
225 226 5.833131 ACAACAGGGTCAAATATTGTCTTGT 59.167 36.000 0.00 0.00 31.36 3.16
226 227 6.016276 ACAACAGGGTCAAATATTGTCTTGTC 60.016 38.462 0.00 0.00 30.47 3.18
227 228 5.010282 ACAGGGTCAAATATTGTCTTGTCC 58.990 41.667 0.00 0.00 32.13 4.02
228 229 5.222130 ACAGGGTCAAATATTGTCTTGTCCT 60.222 40.000 0.00 0.00 33.08 3.85
229 230 5.711976 CAGGGTCAAATATTGTCTTGTCCTT 59.288 40.000 0.00 0.00 33.08 3.36
230 231 5.946377 AGGGTCAAATATTGTCTTGTCCTTC 59.054 40.000 0.00 0.00 33.08 3.46
231 232 5.163754 GGGTCAAATATTGTCTTGTCCTTCG 60.164 44.000 0.00 0.00 33.08 3.79
232 233 5.642063 GGTCAAATATTGTCTTGTCCTTCGA 59.358 40.000 0.00 0.00 30.80 3.71
233 234 6.148811 GGTCAAATATTGTCTTGTCCTTCGAA 59.851 38.462 0.00 0.00 30.80 3.71
234 235 7.148239 GGTCAAATATTGTCTTGTCCTTCGAAT 60.148 37.037 0.00 0.00 30.80 3.34
235 236 8.879759 GTCAAATATTGTCTTGTCCTTCGAATA 58.120 33.333 0.00 0.00 0.00 1.75
236 237 9.098355 TCAAATATTGTCTTGTCCTTCGAATAG 57.902 33.333 0.00 0.00 0.00 1.73
237 238 9.098355 CAAATATTGTCTTGTCCTTCGAATAGA 57.902 33.333 0.00 0.00 0.00 1.98
238 239 8.649973 AATATTGTCTTGTCCTTCGAATAGAC 57.350 34.615 17.30 17.30 33.98 2.59
239 240 5.462530 TTGTCTTGTCCTTCGAATAGACA 57.537 39.130 21.05 21.05 38.20 3.41
240 241 5.462530 TGTCTTGTCCTTCGAATAGACAA 57.537 39.130 28.18 28.18 45.60 3.18
241 242 5.849510 TGTCTTGTCCTTCGAATAGACAAA 58.150 37.500 29.00 21.46 46.63 2.83
242 243 5.926542 TGTCTTGTCCTTCGAATAGACAAAG 59.073 40.000 29.00 24.17 46.63 2.77
243 244 6.157211 GTCTTGTCCTTCGAATAGACAAAGA 58.843 40.000 29.00 25.26 46.63 2.52
244 245 6.645415 GTCTTGTCCTTCGAATAGACAAAGAA 59.355 38.462 29.00 20.29 46.63 2.52
245 246 7.170998 GTCTTGTCCTTCGAATAGACAAAGAAA 59.829 37.037 29.00 18.72 46.63 2.52
246 247 7.878127 TCTTGTCCTTCGAATAGACAAAGAAAT 59.122 33.333 29.00 0.00 46.63 2.17
247 248 7.364522 TGTCCTTCGAATAGACAAAGAAATG 57.635 36.000 22.09 0.00 37.58 2.32
248 249 6.934645 TGTCCTTCGAATAGACAAAGAAATGT 59.065 34.615 22.09 0.00 37.58 2.71
249 250 7.095229 TGTCCTTCGAATAGACAAAGAAATGTG 60.095 37.037 22.09 0.00 37.58 3.21
250 251 6.371548 TCCTTCGAATAGACAAAGAAATGTGG 59.628 38.462 0.00 0.00 32.57 4.17
251 252 6.149474 CCTTCGAATAGACAAAGAAATGTGGT 59.851 38.462 0.00 0.00 32.57 4.16
252 253 6.480524 TCGAATAGACAAAGAAATGTGGTG 57.519 37.500 0.00 0.00 32.57 4.17
253 254 5.411361 TCGAATAGACAAAGAAATGTGGTGG 59.589 40.000 0.00 0.00 32.57 4.61
254 255 5.391312 AATAGACAAAGAAATGTGGTGGC 57.609 39.130 0.00 0.00 32.57 5.01
255 256 1.608590 AGACAAAGAAATGTGGTGGCG 59.391 47.619 0.00 0.00 32.57 5.69
256 257 0.031994 ACAAAGAAATGTGGTGGCGC 59.968 50.000 0.00 0.00 30.82 6.53
257 258 0.031857 CAAAGAAATGTGGTGGCGCA 59.968 50.000 10.83 0.00 0.00 6.09
258 259 0.314935 AAAGAAATGTGGTGGCGCAG 59.685 50.000 10.83 0.00 0.00 5.18
259 260 0.823356 AAGAAATGTGGTGGCGCAGT 60.823 50.000 10.83 0.00 0.00 4.40
260 261 1.081242 GAAATGTGGTGGCGCAGTG 60.081 57.895 10.83 0.00 0.00 3.66
261 262 2.476534 GAAATGTGGTGGCGCAGTGG 62.477 60.000 10.83 0.00 0.00 4.00
262 263 3.790416 AATGTGGTGGCGCAGTGGT 62.790 57.895 10.83 0.00 0.00 4.16
263 264 3.790416 ATGTGGTGGCGCAGTGGTT 62.790 57.895 10.83 0.00 0.00 3.67
264 265 2.281208 GTGGTGGCGCAGTGGTTA 60.281 61.111 10.83 0.00 0.00 2.85
265 266 1.674322 GTGGTGGCGCAGTGGTTAT 60.674 57.895 10.83 0.00 0.00 1.89
266 267 1.074072 TGGTGGCGCAGTGGTTATT 59.926 52.632 10.83 0.00 0.00 1.40
267 268 0.538516 TGGTGGCGCAGTGGTTATTT 60.539 50.000 10.83 0.00 0.00 1.40
268 269 0.601057 GGTGGCGCAGTGGTTATTTT 59.399 50.000 10.83 0.00 0.00 1.82
269 270 1.402325 GGTGGCGCAGTGGTTATTTTC 60.402 52.381 10.83 0.00 0.00 2.29
270 271 1.539827 GTGGCGCAGTGGTTATTTTCT 59.460 47.619 10.83 0.00 0.00 2.52
271 272 1.810151 TGGCGCAGTGGTTATTTTCTC 59.190 47.619 10.83 0.00 0.00 2.87
272 273 2.084546 GGCGCAGTGGTTATTTTCTCT 58.915 47.619 10.83 0.00 0.00 3.10
273 274 2.488153 GGCGCAGTGGTTATTTTCTCTT 59.512 45.455 10.83 0.00 0.00 2.85
274 275 3.492313 GCGCAGTGGTTATTTTCTCTTG 58.508 45.455 0.30 0.00 0.00 3.02
275 276 3.058224 GCGCAGTGGTTATTTTCTCTTGT 60.058 43.478 0.30 0.00 0.00 3.16
276 277 4.466828 CGCAGTGGTTATTTTCTCTTGTG 58.533 43.478 0.00 0.00 0.00 3.33
277 278 4.213270 CGCAGTGGTTATTTTCTCTTGTGA 59.787 41.667 0.00 0.00 0.00 3.58
278 279 5.615544 CGCAGTGGTTATTTTCTCTTGTGAG 60.616 44.000 0.00 0.00 41.51 3.51
279 280 5.335191 GCAGTGGTTATTTTCTCTTGTGAGG 60.335 44.000 0.00 0.00 40.58 3.86
280 281 5.997746 CAGTGGTTATTTTCTCTTGTGAGGA 59.002 40.000 0.00 0.00 40.58 3.71
281 282 6.656693 CAGTGGTTATTTTCTCTTGTGAGGAT 59.343 38.462 0.00 0.00 40.58 3.24
282 283 6.656693 AGTGGTTATTTTCTCTTGTGAGGATG 59.343 38.462 0.00 0.00 40.58 3.51
283 284 6.431234 GTGGTTATTTTCTCTTGTGAGGATGT 59.569 38.462 0.00 0.00 40.58 3.06
284 285 7.004086 TGGTTATTTTCTCTTGTGAGGATGTT 58.996 34.615 0.00 0.00 40.58 2.71
285 286 7.040478 TGGTTATTTTCTCTTGTGAGGATGTTG 60.040 37.037 0.00 0.00 40.58 3.33
286 287 5.972107 ATTTTCTCTTGTGAGGATGTTGG 57.028 39.130 0.00 0.00 40.58 3.77
287 288 4.705110 TTTCTCTTGTGAGGATGTTGGA 57.295 40.909 0.00 0.00 40.58 3.53
288 289 3.969287 TCTCTTGTGAGGATGTTGGAG 57.031 47.619 0.00 0.00 40.58 3.86
289 290 2.568956 TCTCTTGTGAGGATGTTGGAGG 59.431 50.000 0.00 0.00 40.58 4.30
290 291 1.630369 TCTTGTGAGGATGTTGGAGGG 59.370 52.381 0.00 0.00 0.00 4.30
291 292 0.038166 TTGTGAGGATGTTGGAGGGC 59.962 55.000 0.00 0.00 0.00 5.19
292 293 1.133181 TGTGAGGATGTTGGAGGGCA 61.133 55.000 0.00 0.00 0.00 5.36
293 294 0.678048 GTGAGGATGTTGGAGGGCAC 60.678 60.000 0.00 0.00 0.00 5.01
294 295 1.450312 GAGGATGTTGGAGGGCACG 60.450 63.158 0.00 0.00 0.00 5.34
295 296 2.438434 GGATGTTGGAGGGCACGG 60.438 66.667 0.00 0.00 0.00 4.94
296 297 2.668632 GATGTTGGAGGGCACGGA 59.331 61.111 0.00 0.00 0.00 4.69
297 298 1.224592 GATGTTGGAGGGCACGGAT 59.775 57.895 0.00 0.00 0.00 4.18
298 299 0.815615 GATGTTGGAGGGCACGGATC 60.816 60.000 0.00 0.00 0.00 3.36
299 300 2.511600 GTTGGAGGGCACGGATCG 60.512 66.667 0.00 0.00 0.00 3.69
300 301 2.682136 TTGGAGGGCACGGATCGA 60.682 61.111 0.00 0.00 0.00 3.59
301 302 2.287274 TTGGAGGGCACGGATCGAA 61.287 57.895 0.00 0.00 0.00 3.71
302 303 1.622607 TTGGAGGGCACGGATCGAAT 61.623 55.000 0.00 0.00 0.00 3.34
303 304 1.301009 GGAGGGCACGGATCGAATC 60.301 63.158 0.00 0.00 0.00 2.52
304 305 1.301009 GAGGGCACGGATCGAATCC 60.301 63.158 0.00 0.00 46.22 3.01
314 315 3.735237 GGATCGAATCCTGCTTCTACA 57.265 47.619 0.00 0.00 46.19 2.74
315 316 3.648009 GGATCGAATCCTGCTTCTACAG 58.352 50.000 0.00 0.00 46.19 2.74
316 317 3.319405 GGATCGAATCCTGCTTCTACAGA 59.681 47.826 0.00 0.00 46.19 3.41
317 318 4.202161 GGATCGAATCCTGCTTCTACAGAA 60.202 45.833 0.00 0.00 46.19 3.02
318 319 4.801330 TCGAATCCTGCTTCTACAGAAA 57.199 40.909 0.00 0.00 40.25 2.52
319 320 5.344743 TCGAATCCTGCTTCTACAGAAAT 57.655 39.130 0.00 0.00 40.25 2.17
320 321 5.352284 TCGAATCCTGCTTCTACAGAAATC 58.648 41.667 0.00 0.00 40.25 2.17
321 322 4.509600 CGAATCCTGCTTCTACAGAAATCC 59.490 45.833 0.00 0.00 40.25 3.01
322 323 3.914426 TCCTGCTTCTACAGAAATCCC 57.086 47.619 0.00 0.00 40.25 3.85
323 324 3.454858 TCCTGCTTCTACAGAAATCCCT 58.545 45.455 0.00 0.00 40.25 4.20
324 325 3.452627 TCCTGCTTCTACAGAAATCCCTC 59.547 47.826 0.00 0.00 40.25 4.30
325 326 3.452474 CTGCTTCTACAGAAATCCCTCG 58.548 50.000 0.00 0.00 40.25 4.63
326 327 2.205911 GCTTCTACAGAAATCCCTCGC 58.794 52.381 0.00 0.00 33.07 5.03
327 328 2.159028 GCTTCTACAGAAATCCCTCGCT 60.159 50.000 0.00 0.00 33.07 4.93
328 329 3.680196 GCTTCTACAGAAATCCCTCGCTT 60.680 47.826 0.00 0.00 33.07 4.68
329 330 4.508662 CTTCTACAGAAATCCCTCGCTTT 58.491 43.478 0.00 0.00 33.07 3.51
330 331 4.553330 TCTACAGAAATCCCTCGCTTTT 57.447 40.909 0.00 0.00 0.00 2.27
331 332 4.906618 TCTACAGAAATCCCTCGCTTTTT 58.093 39.130 0.00 0.00 0.00 1.94
350 351 4.875544 TTTTTAGCTGCACGGCTATAAG 57.124 40.909 11.80 0.00 43.21 1.73
351 352 1.865865 TTAGCTGCACGGCTATAAGC 58.134 50.000 11.80 0.00 43.21 3.09
352 353 1.040646 TAGCTGCACGGCTATAAGCT 58.959 50.000 7.10 11.27 45.72 3.74
353 354 0.179000 AGCTGCACGGCTATAAGCTT 59.821 50.000 3.48 3.48 41.31 3.74
354 355 1.017387 GCTGCACGGCTATAAGCTTT 58.983 50.000 3.20 0.00 41.99 3.51
355 356 1.401905 GCTGCACGGCTATAAGCTTTT 59.598 47.619 3.20 0.00 41.99 2.27
356 357 2.159379 GCTGCACGGCTATAAGCTTTTT 60.159 45.455 3.20 0.00 41.99 1.94
357 358 3.064820 GCTGCACGGCTATAAGCTTTTTA 59.935 43.478 3.20 0.00 41.99 1.52
358 359 4.786609 GCTGCACGGCTATAAGCTTTTTAG 60.787 45.833 3.20 7.97 41.99 1.85
359 360 3.064820 TGCACGGCTATAAGCTTTTTAGC 59.935 43.478 23.17 23.17 41.99 3.09
365 366 5.331657 GCTATAAGCTTTTTAGCCTCGTC 57.668 43.478 21.72 3.18 38.45 4.20
366 367 4.085004 GCTATAAGCTTTTTAGCCTCGTCG 60.085 45.833 21.72 0.00 38.45 5.12
367 368 0.796927 AAGCTTTTTAGCCTCGTCGC 59.203 50.000 0.00 0.00 34.90 5.19
368 369 1.058903 GCTTTTTAGCCTCGTCGCG 59.941 57.895 0.00 0.00 0.00 5.87
369 370 1.623973 GCTTTTTAGCCTCGTCGCGT 61.624 55.000 5.77 0.00 0.00 6.01
370 371 0.788391 CTTTTTAGCCTCGTCGCGTT 59.212 50.000 5.77 0.00 0.00 4.84
371 372 1.193874 CTTTTTAGCCTCGTCGCGTTT 59.806 47.619 5.77 0.00 0.00 3.60
372 373 2.063156 TTTTAGCCTCGTCGCGTTTA 57.937 45.000 5.77 0.00 0.00 2.01
373 374 1.339711 TTTAGCCTCGTCGCGTTTAC 58.660 50.000 5.77 0.00 0.00 2.01
374 375 0.523072 TTAGCCTCGTCGCGTTTACT 59.477 50.000 5.77 0.00 0.00 2.24
375 376 0.179181 TAGCCTCGTCGCGTTTACTG 60.179 55.000 5.77 0.00 0.00 2.74
376 377 2.442188 GCCTCGTCGCGTTTACTGG 61.442 63.158 5.77 3.63 0.00 4.00
377 378 1.804326 CCTCGTCGCGTTTACTGGG 60.804 63.158 5.77 0.00 0.00 4.45
378 379 2.431260 TCGTCGCGTTTACTGGGC 60.431 61.111 5.77 0.00 0.00 5.36
379 380 3.484547 CGTCGCGTTTACTGGGCC 61.485 66.667 5.77 0.00 0.00 5.80
380 381 3.484547 GTCGCGTTTACTGGGCCG 61.485 66.667 5.77 0.00 0.00 6.13
381 382 4.745751 TCGCGTTTACTGGGCCGG 62.746 66.667 11.83 11.83 0.00 6.13
421 422 2.585247 GCCAGTAGCGCTAACCGG 60.585 66.667 20.73 19.64 37.44 5.28
422 423 2.585247 CCAGTAGCGCTAACCGGC 60.585 66.667 20.73 6.27 37.44 6.13
441 442 4.521062 CAGAGGGCGCCGAAGAGG 62.521 72.222 22.54 3.49 44.97 3.69
442 443 4.761058 AGAGGGCGCCGAAGAGGA 62.761 66.667 22.54 0.00 45.00 3.71
443 444 4.516195 GAGGGCGCCGAAGAGGAC 62.516 72.222 22.54 3.21 45.00 3.85
446 447 4.516195 GGCGCCGAAGAGGACCTC 62.516 72.222 12.58 14.15 45.00 3.85
447 448 3.453679 GCGCCGAAGAGGACCTCT 61.454 66.667 18.94 18.94 43.37 3.69
448 449 2.802106 CGCCGAAGAGGACCTCTC 59.198 66.667 24.49 15.83 40.28 3.20
583 584 2.668212 CTCGGCCGCTGTTGGAAA 60.668 61.111 23.51 0.00 0.00 3.13
584 585 2.033448 TCGGCCGCTGTTGGAAAT 59.967 55.556 23.51 0.00 0.00 2.17
585 586 0.742990 CTCGGCCGCTGTTGGAAATA 60.743 55.000 23.51 0.00 0.00 1.40
586 587 0.321741 TCGGCCGCTGTTGGAAATAA 60.322 50.000 23.51 0.00 0.00 1.40
587 588 0.738389 CGGCCGCTGTTGGAAATAAT 59.262 50.000 14.67 0.00 0.00 1.28
588 589 1.268539 CGGCCGCTGTTGGAAATAATC 60.269 52.381 14.67 0.00 0.00 1.75
589 590 1.748493 GGCCGCTGTTGGAAATAATCA 59.252 47.619 0.00 0.00 0.00 2.57
590 591 2.479560 GGCCGCTGTTGGAAATAATCAC 60.480 50.000 0.00 0.00 0.00 3.06
591 592 2.791158 GCCGCTGTTGGAAATAATCACG 60.791 50.000 0.00 0.00 0.00 4.35
592 593 2.675844 CCGCTGTTGGAAATAATCACGA 59.324 45.455 0.00 0.00 0.00 4.35
593 594 3.312421 CCGCTGTTGGAAATAATCACGAT 59.688 43.478 0.00 0.00 0.00 3.73
594 595 4.201910 CCGCTGTTGGAAATAATCACGATT 60.202 41.667 0.00 0.00 34.93 3.34
595 596 4.963953 CGCTGTTGGAAATAATCACGATTC 59.036 41.667 0.00 0.00 32.50 2.52
596 597 4.963953 GCTGTTGGAAATAATCACGATTCG 59.036 41.667 4.14 4.14 32.50 3.34
597 598 5.478233 TGTTGGAAATAATCACGATTCGG 57.522 39.130 11.29 0.00 32.50 4.30
598 599 4.938832 TGTTGGAAATAATCACGATTCGGT 59.061 37.500 11.29 0.00 32.50 4.69
599 600 5.163804 TGTTGGAAATAATCACGATTCGGTG 60.164 40.000 11.29 6.66 39.29 4.94
600 601 4.509616 TGGAAATAATCACGATTCGGTGT 58.490 39.130 11.29 0.00 39.00 4.16
601 602 4.569162 TGGAAATAATCACGATTCGGTGTC 59.431 41.667 11.29 0.12 39.00 3.67
602 603 4.025145 GGAAATAATCACGATTCGGTGTCC 60.025 45.833 11.29 4.95 39.00 4.02
603 604 2.589798 TAATCACGATTCGGTGTCCC 57.410 50.000 11.29 0.00 39.00 4.46
604 605 0.902531 AATCACGATTCGGTGTCCCT 59.097 50.000 11.29 0.00 39.00 4.20
605 606 0.175760 ATCACGATTCGGTGTCCCTG 59.824 55.000 11.29 0.00 39.00 4.45
606 607 1.183030 TCACGATTCGGTGTCCCTGT 61.183 55.000 11.29 0.00 39.00 4.00
607 608 0.736325 CACGATTCGGTGTCCCTGTC 60.736 60.000 11.29 0.00 33.24 3.51
608 609 1.153628 CGATTCGGTGTCCCTGTCC 60.154 63.158 0.00 0.00 0.00 4.02
609 610 1.221021 GATTCGGTGTCCCTGTCCC 59.779 63.158 0.00 0.00 0.00 4.46
610 611 2.573609 GATTCGGTGTCCCTGTCCCG 62.574 65.000 0.00 0.00 41.75 5.14
611 612 4.608774 TCGGTGTCCCTGTCCCGT 62.609 66.667 0.00 0.00 41.17 5.28
612 613 2.677524 CGGTGTCCCTGTCCCGTA 60.678 66.667 0.00 0.00 35.78 4.02
613 614 2.976356 GGTGTCCCTGTCCCGTAC 59.024 66.667 0.00 0.00 0.00 3.67
614 615 2.570181 GTGTCCCTGTCCCGTACG 59.430 66.667 8.69 8.69 0.00 3.67
615 616 2.677524 TGTCCCTGTCCCGTACGG 60.678 66.667 27.68 27.68 0.00 4.02
616 617 2.361610 GTCCCTGTCCCGTACGGA 60.362 66.667 35.41 18.31 36.47 4.69
623 624 2.124736 TCCCGTACGGACCGGTAG 60.125 66.667 35.41 16.55 43.98 3.18
841 842 7.521509 ACTGCACGTAGAAGACAAATTATAC 57.478 36.000 0.00 0.00 0.00 1.47
846 847 6.199043 CGTAGAAGACAAATTATACGCTGG 57.801 41.667 1.40 0.00 41.60 4.85
847 848 5.332355 CGTAGAAGACAAATTATACGCTGGC 60.332 44.000 1.40 0.00 41.60 4.85
848 849 4.770795 AGAAGACAAATTATACGCTGGCT 58.229 39.130 0.00 0.00 0.00 4.75
849 850 4.811557 AGAAGACAAATTATACGCTGGCTC 59.188 41.667 0.00 0.00 0.00 4.70
850 851 3.123804 AGACAAATTATACGCTGGCTCG 58.876 45.455 0.00 0.00 0.00 5.03
851 852 2.210116 ACAAATTATACGCTGGCTCGG 58.790 47.619 4.93 0.00 0.00 4.63
852 853 1.069906 CAAATTATACGCTGGCTCGGC 60.070 52.381 4.93 0.00 0.00 5.54
895 896 1.074471 ACTGTGTCCCTGTCCCTGT 60.074 57.895 0.00 0.00 0.00 4.00
896 897 1.122019 ACTGTGTCCCTGTCCCTGTC 61.122 60.000 0.00 0.00 0.00 3.51
897 898 1.831652 CTGTGTCCCTGTCCCTGTCC 61.832 65.000 0.00 0.00 0.00 4.02
898 899 2.203938 TGTCCCTGTCCCTGTCCC 60.204 66.667 0.00 0.00 0.00 4.46
1009 1049 8.926374 TCCACCTATAATAAACCAGATACGAAA 58.074 33.333 0.00 0.00 0.00 3.46
1238 1308 1.600164 CGTCGGGAAGTACGTGACAAA 60.600 52.381 0.00 0.00 34.48 2.83
1263 1333 1.652563 GCTTTCGCCAAACGTCCTT 59.347 52.632 0.00 0.00 44.19 3.36
1265 1335 1.226746 CTTTCGCCAAACGTCCTTCT 58.773 50.000 0.00 0.00 44.19 2.85
1266 1336 0.941542 TTTCGCCAAACGTCCTTCTG 59.058 50.000 0.00 0.00 44.19 3.02
1329 1399 1.298014 CCAGTGGAGGAGGCTCAAC 59.702 63.158 17.69 9.13 0.00 3.18
1475 1570 2.595238 GACGGGTATAGAGGACATGGT 58.405 52.381 0.00 0.00 0.00 3.55
1698 1795 3.248024 TCCGCATACCTTAGGGATGATT 58.752 45.455 26.63 0.00 36.25 2.57
1812 1912 1.271543 TGGCTGAGCATGTTAGCAAGT 60.272 47.619 6.82 0.00 39.15 3.16
2000 2100 2.378547 ACCTGATGTTTTCAAGGCCCTA 59.621 45.455 0.00 0.00 32.78 3.53
2183 2283 4.599041 TGGCTTTAGCTGACCAACATAAT 58.401 39.130 0.00 0.00 41.70 1.28
2332 2433 3.566523 AGAAGAGAACAAAGCGTCGTAG 58.433 45.455 0.00 0.00 0.00 3.51
2466 2567 1.137404 GTGGATGCCGACATGTTGC 59.863 57.895 7.65 10.64 36.35 4.17
2475 2576 2.605818 GCCGACATGTTGCGAAACTATA 59.394 45.455 8.00 0.00 0.00 1.31
2488 2589 5.182570 TGCGAAACTATATATACCGCACTCT 59.817 40.000 16.25 0.00 44.81 3.24
2620 2721 2.014128 ACCGATTGACATAAAAGGGCG 58.986 47.619 0.00 0.00 0.00 6.13
2748 3215 3.832490 TGACTAGCACAAGGACTACATGT 59.168 43.478 2.69 2.69 0.00 3.21
2766 3233 0.108615 GTGCTGTCGCCACTAGTGAT 60.109 55.000 24.68 0.00 37.33 3.06
2841 3308 9.997172 AAAAATACTCCCTCCATTCTTAAAGAT 57.003 29.630 0.00 0.00 0.00 2.40
2842 3309 9.997172 AAAATACTCCCTCCATTCTTAAAGATT 57.003 29.630 0.00 0.00 0.00 2.40
2843 3310 9.997172 AAATACTCCCTCCATTCTTAAAGATTT 57.003 29.630 0.00 0.00 0.00 2.17
2844 3311 9.634021 AATACTCCCTCCATTCTTAAAGATTTC 57.366 33.333 0.00 0.00 0.00 2.17
2845 3312 7.032598 ACTCCCTCCATTCTTAAAGATTTCA 57.967 36.000 0.00 0.00 0.00 2.69
2846 3313 7.470192 ACTCCCTCCATTCTTAAAGATTTCAA 58.530 34.615 0.00 0.00 0.00 2.69
2847 3314 7.950124 ACTCCCTCCATTCTTAAAGATTTCAAA 59.050 33.333 0.00 0.00 0.00 2.69
2848 3315 8.899887 TCCCTCCATTCTTAAAGATTTCAAAT 57.100 30.769 0.00 0.00 0.00 2.32
2849 3316 8.752187 TCCCTCCATTCTTAAAGATTTCAAATG 58.248 33.333 0.00 0.00 0.00 2.32
2850 3317 7.983484 CCCTCCATTCTTAAAGATTTCAAATGG 59.017 37.037 14.26 14.26 41.82 3.16
2851 3318 8.752187 CCTCCATTCTTAAAGATTTCAAATGGA 58.248 33.333 18.33 18.33 45.02 3.41
2853 3320 9.312904 TCCATTCTTAAAGATTTCAAATGGAGT 57.687 29.630 16.85 0.00 43.35 3.85
2869 3336 3.900971 TGGAGTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
2870 3337 4.476297 TGGAGTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
2871 3338 5.633117 TGGAGTACCACATACGGATGTATA 58.367 41.667 14.23 6.38 44.82 1.47
2872 3339 6.250711 TGGAGTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
2873 3340 7.404481 TGGAGTACCACATACGGATGTATATA 58.596 38.462 14.23 3.33 44.82 0.86
2874 3341 7.555195 TGGAGTACCACATACGGATGTATATAG 59.445 40.741 14.23 0.00 44.82 1.31
2875 3342 7.772292 GGAGTACCACATACGGATGTATATAGA 59.228 40.741 14.23 0.00 44.82 1.98
2876 3343 8.503458 AGTACCACATACGGATGTATATAGAC 57.497 38.462 14.23 6.17 44.82 2.59
2877 3344 8.105197 AGTACCACATACGGATGTATATAGACA 58.895 37.037 14.23 2.07 44.82 3.41
2878 3345 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2880 3347 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
2908 3375 7.992754 AGAGTTTAGATTCACTCATTTTGCT 57.007 32.000 2.36 0.00 41.77 3.91
2909 3376 8.038492 AGAGTTTAGATTCACTCATTTTGCTC 57.962 34.615 2.36 0.00 41.77 4.26
2910 3377 7.120432 AGAGTTTAGATTCACTCATTTTGCTCC 59.880 37.037 2.36 0.00 41.77 4.70
2911 3378 5.801350 TTAGATTCACTCATTTTGCTCCG 57.199 39.130 0.00 0.00 0.00 4.63
2912 3379 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2913 3380 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2914 3381 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2915 3382 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2916 3383 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2917 3384 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2918 3385 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2919 3386 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2920 3387 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2921 3388 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2922 3389 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2923 3390 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2924 3391 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2925 3392 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2926 3393 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2927 3394 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2928 3395 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2929 3396 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2930 3397 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2931 3398 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2932 3399 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2933 3400 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
2934 3401 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2935 3402 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2936 3403 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2937 3404 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2939 3406 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
2940 3407 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
2965 3432 8.996024 AAAAACAAATATTTAGGAACGGATGG 57.004 30.769 0.00 0.00 0.00 3.51
2966 3433 7.948034 AAACAAATATTTAGGAACGGATGGA 57.052 32.000 0.00 0.00 0.00 3.41
2967 3434 7.568199 AACAAATATTTAGGAACGGATGGAG 57.432 36.000 0.00 0.00 0.00 3.86
3029 3497 8.058235 TGGTTTAGGGACAAATCATTCATATCA 58.942 33.333 0.00 0.00 0.00 2.15
3288 3756 1.607148 CCCGTCCAAAACTGAACCTTC 59.393 52.381 0.00 0.00 0.00 3.46
3409 3877 6.378280 AGCACTGAGATTAAAAGGTTTATGGG 59.622 38.462 0.00 0.00 0.00 4.00
3487 3955 8.806177 AAAAACGGGTTTCTATACAATTTGAC 57.194 30.769 2.79 0.00 31.45 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.965748 GTTTTGAAAAGTTCATCGATTTGAAAA 57.034 25.926 3.10 2.35 39.84 2.29
17 18 9.364989 AGTTTTGAAAAGTTCATCGATTTGAAA 57.635 25.926 3.10 0.00 39.84 2.69
18 19 8.806634 CAGTTTTGAAAAGTTCATCGATTTGAA 58.193 29.630 0.00 0.00 39.84 2.69
19 20 8.187480 TCAGTTTTGAAAAGTTCATCGATTTGA 58.813 29.630 0.00 0.00 39.84 2.69
20 21 8.338985 TCAGTTTTGAAAAGTTCATCGATTTG 57.661 30.769 0.00 0.00 39.84 2.32
21 22 8.971321 CATCAGTTTTGAAAAGTTCATCGATTT 58.029 29.630 0.00 0.00 39.84 2.17
22 23 8.352201 TCATCAGTTTTGAAAAGTTCATCGATT 58.648 29.630 0.00 0.00 39.84 3.34
23 24 7.874940 TCATCAGTTTTGAAAAGTTCATCGAT 58.125 30.769 0.00 0.00 39.84 3.59
24 25 7.258022 TCATCAGTTTTGAAAAGTTCATCGA 57.742 32.000 0.00 0.00 39.84 3.59
25 26 7.431960 TGTTCATCAGTTTTGAAAAGTTCATCG 59.568 33.333 0.00 0.00 39.84 3.84
26 27 8.633075 TGTTCATCAGTTTTGAAAAGTTCATC 57.367 30.769 0.00 0.00 39.84 2.92
27 28 9.603921 AATGTTCATCAGTTTTGAAAAGTTCAT 57.396 25.926 0.00 0.00 39.84 2.57
28 29 9.434420 AAATGTTCATCAGTTTTGAAAAGTTCA 57.566 25.926 0.00 0.00 36.78 3.18
31 32 9.657419 AGAAAATGTTCATCAGTTTTGAAAAGT 57.343 25.926 0.00 0.00 43.00 2.66
156 157 9.962783 GTAAGACAATTCCAGTCTATTATACGT 57.037 33.333 0.00 0.00 45.11 3.57
157 158 9.961265 TGTAAGACAATTCCAGTCTATTATACG 57.039 33.333 0.00 0.00 45.11 3.06
193 194 5.923733 ATTTGACCCTGTTGTTACAACAA 57.076 34.783 27.48 14.16 45.88 2.83
194 195 7.068839 ACAATATTTGACCCTGTTGTTACAACA 59.931 33.333 26.31 26.31 37.08 3.33
195 196 7.430441 ACAATATTTGACCCTGTTGTTACAAC 58.570 34.615 20.04 20.04 32.92 3.32
196 197 7.504238 AGACAATATTTGACCCTGTTGTTACAA 59.496 33.333 0.00 0.00 32.92 2.41
197 198 7.001674 AGACAATATTTGACCCTGTTGTTACA 58.998 34.615 0.00 0.00 30.70 2.41
198 199 7.448748 AGACAATATTTGACCCTGTTGTTAC 57.551 36.000 0.00 0.00 30.70 2.50
199 200 7.504238 ACAAGACAATATTTGACCCTGTTGTTA 59.496 33.333 0.00 0.00 30.70 2.41
200 201 6.323739 ACAAGACAATATTTGACCCTGTTGTT 59.676 34.615 0.00 0.00 30.70 2.83
201 202 5.833131 ACAAGACAATATTTGACCCTGTTGT 59.167 36.000 0.00 0.00 32.98 3.32
202 203 6.331369 ACAAGACAATATTTGACCCTGTTG 57.669 37.500 0.00 0.00 0.00 3.33
203 204 5.476945 GGACAAGACAATATTTGACCCTGTT 59.523 40.000 0.00 0.00 34.48 3.16
204 205 5.010282 GGACAAGACAATATTTGACCCTGT 58.990 41.667 0.00 0.00 34.48 4.00
205 206 5.256474 AGGACAAGACAATATTTGACCCTG 58.744 41.667 3.66 0.00 39.07 4.45
206 207 5.520748 AGGACAAGACAATATTTGACCCT 57.479 39.130 3.66 0.00 39.07 4.34
207 208 5.163754 CGAAGGACAAGACAATATTTGACCC 60.164 44.000 3.66 0.00 39.07 4.46
208 209 5.642063 TCGAAGGACAAGACAATATTTGACC 59.358 40.000 0.00 0.00 38.73 4.02
209 210 6.721571 TCGAAGGACAAGACAATATTTGAC 57.278 37.500 0.00 0.00 0.00 3.18
210 211 7.921786 ATTCGAAGGACAAGACAATATTTGA 57.078 32.000 3.35 0.00 0.00 2.69
211 212 9.098355 TCTATTCGAAGGACAAGACAATATTTG 57.902 33.333 3.35 0.00 0.00 2.32
212 213 9.099454 GTCTATTCGAAGGACAAGACAATATTT 57.901 33.333 21.44 0.00 35.62 1.40
213 214 8.258007 TGTCTATTCGAAGGACAAGACAATATT 58.742 33.333 24.69 0.00 39.45 1.28
214 215 7.782049 TGTCTATTCGAAGGACAAGACAATAT 58.218 34.615 24.69 0.00 39.45 1.28
215 216 7.165460 TGTCTATTCGAAGGACAAGACAATA 57.835 36.000 24.69 7.78 39.45 1.90
216 217 6.037786 TGTCTATTCGAAGGACAAGACAAT 57.962 37.500 24.69 0.52 39.45 2.71
217 218 5.462530 TGTCTATTCGAAGGACAAGACAA 57.537 39.130 24.69 8.84 39.45 3.18
218 219 5.462530 TTGTCTATTCGAAGGACAAGACA 57.537 39.130 29.22 23.85 42.56 3.41
219 220 6.157211 TCTTTGTCTATTCGAAGGACAAGAC 58.843 40.000 30.09 23.00 46.13 3.01
220 221 6.340962 TCTTTGTCTATTCGAAGGACAAGA 57.659 37.500 30.09 26.75 46.13 3.02
221 222 7.421530 TTTCTTTGTCTATTCGAAGGACAAG 57.578 36.000 30.09 25.73 46.13 3.16
222 223 7.444183 ACATTTCTTTGTCTATTCGAAGGACAA 59.556 33.333 29.22 29.22 44.69 3.18
223 224 6.934645 ACATTTCTTTGTCTATTCGAAGGACA 59.065 34.615 23.73 23.73 38.07 4.02
224 225 7.237173 CACATTTCTTTGTCTATTCGAAGGAC 58.763 38.462 20.29 20.29 31.70 3.85
225 226 6.371548 CCACATTTCTTTGTCTATTCGAAGGA 59.628 38.462 3.35 1.58 31.70 3.36
226 227 6.149474 ACCACATTTCTTTGTCTATTCGAAGG 59.851 38.462 3.35 0.00 31.70 3.46
227 228 7.017645 CACCACATTTCTTTGTCTATTCGAAG 58.982 38.462 3.35 0.00 0.00 3.79
228 229 6.072728 CCACCACATTTCTTTGTCTATTCGAA 60.073 38.462 0.00 0.00 0.00 3.71
229 230 5.411361 CCACCACATTTCTTTGTCTATTCGA 59.589 40.000 0.00 0.00 0.00 3.71
230 231 5.631026 CCACCACATTTCTTTGTCTATTCG 58.369 41.667 0.00 0.00 0.00 3.34
231 232 5.402398 GCCACCACATTTCTTTGTCTATTC 58.598 41.667 0.00 0.00 0.00 1.75
232 233 4.082787 CGCCACCACATTTCTTTGTCTATT 60.083 41.667 0.00 0.00 0.00 1.73
233 234 3.440173 CGCCACCACATTTCTTTGTCTAT 59.560 43.478 0.00 0.00 0.00 1.98
234 235 2.811431 CGCCACCACATTTCTTTGTCTA 59.189 45.455 0.00 0.00 0.00 2.59
235 236 1.608590 CGCCACCACATTTCTTTGTCT 59.391 47.619 0.00 0.00 0.00 3.41
236 237 1.930371 GCGCCACCACATTTCTTTGTC 60.930 52.381 0.00 0.00 0.00 3.18
237 238 0.031994 GCGCCACCACATTTCTTTGT 59.968 50.000 0.00 0.00 0.00 2.83
238 239 0.031857 TGCGCCACCACATTTCTTTG 59.968 50.000 4.18 0.00 0.00 2.77
239 240 0.314935 CTGCGCCACCACATTTCTTT 59.685 50.000 4.18 0.00 0.00 2.52
240 241 0.823356 ACTGCGCCACCACATTTCTT 60.823 50.000 4.18 0.00 0.00 2.52
241 242 1.228245 ACTGCGCCACCACATTTCT 60.228 52.632 4.18 0.00 0.00 2.52
242 243 1.081242 CACTGCGCCACCACATTTC 60.081 57.895 4.18 0.00 0.00 2.17
243 244 2.563798 CCACTGCGCCACCACATTT 61.564 57.895 4.18 0.00 0.00 2.32
244 245 2.985282 CCACTGCGCCACCACATT 60.985 61.111 4.18 0.00 0.00 2.71
245 246 2.404566 TAACCACTGCGCCACCACAT 62.405 55.000 4.18 0.00 0.00 3.21
246 247 2.404566 ATAACCACTGCGCCACCACA 62.405 55.000 4.18 0.00 0.00 4.17
247 248 1.241315 AATAACCACTGCGCCACCAC 61.241 55.000 4.18 0.00 0.00 4.16
248 249 0.538516 AAATAACCACTGCGCCACCA 60.539 50.000 4.18 0.00 0.00 4.17
249 250 0.601057 AAAATAACCACTGCGCCACC 59.399 50.000 4.18 0.00 0.00 4.61
250 251 1.539827 AGAAAATAACCACTGCGCCAC 59.460 47.619 4.18 0.00 0.00 5.01
251 252 1.810151 GAGAAAATAACCACTGCGCCA 59.190 47.619 4.18 0.00 0.00 5.69
252 253 2.084546 AGAGAAAATAACCACTGCGCC 58.915 47.619 4.18 0.00 0.00 6.53
253 254 3.058224 ACAAGAGAAAATAACCACTGCGC 60.058 43.478 0.00 0.00 0.00 6.09
254 255 4.213270 TCACAAGAGAAAATAACCACTGCG 59.787 41.667 0.00 0.00 0.00 5.18
255 256 5.335191 CCTCACAAGAGAAAATAACCACTGC 60.335 44.000 0.00 0.00 44.98 4.40
256 257 5.997746 TCCTCACAAGAGAAAATAACCACTG 59.002 40.000 0.00 0.00 44.98 3.66
257 258 6.187727 TCCTCACAAGAGAAAATAACCACT 57.812 37.500 0.00 0.00 44.98 4.00
258 259 6.431234 ACATCCTCACAAGAGAAAATAACCAC 59.569 38.462 0.00 0.00 44.98 4.16
259 260 6.542821 ACATCCTCACAAGAGAAAATAACCA 58.457 36.000 0.00 0.00 44.98 3.67
260 261 7.308435 CAACATCCTCACAAGAGAAAATAACC 58.692 38.462 0.00 0.00 44.98 2.85
261 262 7.174946 TCCAACATCCTCACAAGAGAAAATAAC 59.825 37.037 0.00 0.00 44.98 1.89
262 263 7.230747 TCCAACATCCTCACAAGAGAAAATAA 58.769 34.615 0.00 0.00 44.98 1.40
263 264 6.778821 TCCAACATCCTCACAAGAGAAAATA 58.221 36.000 0.00 0.00 44.98 1.40
264 265 5.634118 TCCAACATCCTCACAAGAGAAAAT 58.366 37.500 0.00 0.00 44.98 1.82
265 266 5.047566 TCCAACATCCTCACAAGAGAAAA 57.952 39.130 0.00 0.00 44.98 2.29
266 267 4.505566 CCTCCAACATCCTCACAAGAGAAA 60.506 45.833 0.00 0.00 44.98 2.52
267 268 3.008375 CCTCCAACATCCTCACAAGAGAA 59.992 47.826 0.00 0.00 44.98 2.87
268 269 2.568956 CCTCCAACATCCTCACAAGAGA 59.431 50.000 0.00 0.00 44.98 3.10
269 270 2.355513 CCCTCCAACATCCTCACAAGAG 60.356 54.545 0.00 0.00 41.72 2.85
270 271 1.630369 CCCTCCAACATCCTCACAAGA 59.370 52.381 0.00 0.00 0.00 3.02
271 272 1.952367 GCCCTCCAACATCCTCACAAG 60.952 57.143 0.00 0.00 0.00 3.16
272 273 0.038166 GCCCTCCAACATCCTCACAA 59.962 55.000 0.00 0.00 0.00 3.33
273 274 1.133181 TGCCCTCCAACATCCTCACA 61.133 55.000 0.00 0.00 0.00 3.58
274 275 0.678048 GTGCCCTCCAACATCCTCAC 60.678 60.000 0.00 0.00 0.00 3.51
275 276 1.685224 GTGCCCTCCAACATCCTCA 59.315 57.895 0.00 0.00 0.00 3.86
276 277 1.450312 CGTGCCCTCCAACATCCTC 60.450 63.158 0.00 0.00 0.00 3.71
277 278 2.671070 CGTGCCCTCCAACATCCT 59.329 61.111 0.00 0.00 0.00 3.24
278 279 2.270874 ATCCGTGCCCTCCAACATCC 62.271 60.000 0.00 0.00 0.00 3.51
279 280 0.815615 GATCCGTGCCCTCCAACATC 60.816 60.000 0.00 0.00 0.00 3.06
280 281 1.224592 GATCCGTGCCCTCCAACAT 59.775 57.895 0.00 0.00 0.00 2.71
281 282 2.668632 GATCCGTGCCCTCCAACA 59.331 61.111 0.00 0.00 0.00 3.33
282 283 2.511600 CGATCCGTGCCCTCCAAC 60.512 66.667 0.00 0.00 0.00 3.77
283 284 1.622607 ATTCGATCCGTGCCCTCCAA 61.623 55.000 0.00 0.00 0.00 3.53
284 285 2.028125 GATTCGATCCGTGCCCTCCA 62.028 60.000 0.00 0.00 0.00 3.86
285 286 1.301009 GATTCGATCCGTGCCCTCC 60.301 63.158 0.00 0.00 0.00 4.30
286 287 1.301009 GGATTCGATCCGTGCCCTC 60.301 63.158 0.00 0.00 40.13 4.30
287 288 2.822399 GGATTCGATCCGTGCCCT 59.178 61.111 0.00 0.00 40.13 5.19
293 294 8.823624 TTTCTGTAGAAGCAGGATTCGATCCG 62.824 46.154 7.85 5.38 43.70 4.18
294 295 5.682471 TTTCTGTAGAAGCAGGATTCGATCC 60.682 44.000 5.94 5.94 41.43 3.36
295 296 4.576216 TCTGTAGAAGCAGGATTCGATC 57.424 45.455 0.00 0.00 37.12 3.69
296 297 5.344743 TTTCTGTAGAAGCAGGATTCGAT 57.655 39.130 0.00 0.00 37.12 3.59
297 298 4.801330 TTTCTGTAGAAGCAGGATTCGA 57.199 40.909 0.00 0.00 37.12 3.71
298 299 4.509600 GGATTTCTGTAGAAGCAGGATTCG 59.490 45.833 0.00 0.00 37.12 3.34
299 300 4.819088 GGGATTTCTGTAGAAGCAGGATTC 59.181 45.833 0.00 0.00 37.12 2.52
300 301 4.476479 AGGGATTTCTGTAGAAGCAGGATT 59.524 41.667 0.00 0.00 37.12 3.01
301 302 4.043596 AGGGATTTCTGTAGAAGCAGGAT 58.956 43.478 0.00 0.00 37.12 3.24
302 303 3.452627 GAGGGATTTCTGTAGAAGCAGGA 59.547 47.826 0.00 0.00 37.12 3.86
303 304 3.739519 CGAGGGATTTCTGTAGAAGCAGG 60.740 52.174 0.00 0.00 37.12 4.85
304 305 3.452474 CGAGGGATTTCTGTAGAAGCAG 58.548 50.000 0.00 0.00 35.21 4.24
305 306 2.418746 GCGAGGGATTTCTGTAGAAGCA 60.419 50.000 0.00 0.00 35.21 3.91
306 307 2.159028 AGCGAGGGATTTCTGTAGAAGC 60.159 50.000 0.00 0.00 35.21 3.86
307 308 3.810310 AGCGAGGGATTTCTGTAGAAG 57.190 47.619 0.00 0.00 35.21 2.85
308 309 4.553330 AAAGCGAGGGATTTCTGTAGAA 57.447 40.909 0.00 0.00 0.00 2.10
309 310 4.553330 AAAAGCGAGGGATTTCTGTAGA 57.447 40.909 0.00 0.00 28.76 2.59
334 335 0.179000 AAGCTTATAGCCGTGCAGCT 59.821 50.000 0.00 5.70 43.77 4.24
335 336 1.017387 AAAGCTTATAGCCGTGCAGC 58.983 50.000 0.00 0.00 43.77 5.25
336 337 3.764885 AAAAAGCTTATAGCCGTGCAG 57.235 42.857 0.00 0.00 43.77 4.41
337 338 3.064820 GCTAAAAAGCTTATAGCCGTGCA 59.935 43.478 23.85 0.00 43.77 4.57
338 339 3.618698 GCTAAAAAGCTTATAGCCGTGC 58.381 45.455 23.85 8.82 43.77 5.34
343 344 4.085004 CGACGAGGCTAAAAAGCTTATAGC 60.085 45.833 25.27 25.27 42.84 2.97
344 345 4.085004 GCGACGAGGCTAAAAAGCTTATAG 60.085 45.833 0.00 7.11 34.73 1.31
345 346 3.800506 GCGACGAGGCTAAAAAGCTTATA 59.199 43.478 0.00 0.00 34.73 0.98
346 347 2.608090 GCGACGAGGCTAAAAAGCTTAT 59.392 45.455 0.00 0.00 34.73 1.73
347 348 1.997606 GCGACGAGGCTAAAAAGCTTA 59.002 47.619 0.00 0.00 34.73 3.09
348 349 0.796927 GCGACGAGGCTAAAAAGCTT 59.203 50.000 0.00 0.00 34.73 3.74
349 350 1.352156 CGCGACGAGGCTAAAAAGCT 61.352 55.000 0.00 0.00 34.73 3.74
350 351 1.058903 CGCGACGAGGCTAAAAAGC 59.941 57.895 0.00 0.00 0.00 3.51
351 352 0.788391 AACGCGACGAGGCTAAAAAG 59.212 50.000 15.93 0.00 0.00 2.27
352 353 1.219646 AAACGCGACGAGGCTAAAAA 58.780 45.000 15.93 0.00 0.00 1.94
353 354 1.720852 GTAAACGCGACGAGGCTAAAA 59.279 47.619 15.93 0.00 0.00 1.52
354 355 1.068333 AGTAAACGCGACGAGGCTAAA 60.068 47.619 15.93 0.00 0.00 1.85
355 356 0.523072 AGTAAACGCGACGAGGCTAA 59.477 50.000 15.93 0.00 0.00 3.09
356 357 0.179181 CAGTAAACGCGACGAGGCTA 60.179 55.000 15.93 0.00 0.00 3.93
357 358 1.443872 CAGTAAACGCGACGAGGCT 60.444 57.895 15.93 0.00 0.00 4.58
358 359 2.442188 CCAGTAAACGCGACGAGGC 61.442 63.158 15.93 0.00 0.00 4.70
359 360 1.804326 CCCAGTAAACGCGACGAGG 60.804 63.158 15.93 8.50 0.00 4.63
360 361 2.442188 GCCCAGTAAACGCGACGAG 61.442 63.158 15.93 0.00 0.00 4.18
361 362 2.431260 GCCCAGTAAACGCGACGA 60.431 61.111 15.93 0.00 0.00 4.20
362 363 3.484547 GGCCCAGTAAACGCGACG 61.485 66.667 15.93 0.00 0.00 5.12
363 364 3.484547 CGGCCCAGTAAACGCGAC 61.485 66.667 15.93 0.00 0.00 5.19
364 365 4.745751 CCGGCCCAGTAAACGCGA 62.746 66.667 15.93 0.00 0.00 5.87
404 405 2.585247 CCGGTTAGCGCTACTGGC 60.585 66.667 18.63 7.73 35.39 4.85
405 406 2.585247 GCCGGTTAGCGCTACTGG 60.585 66.667 27.19 27.19 43.57 4.00
424 425 4.521062 CCTCTTCGGCGCCCTCTG 62.521 72.222 23.46 6.82 0.00 3.35
425 426 4.761058 TCCTCTTCGGCGCCCTCT 62.761 66.667 23.46 0.00 0.00 3.69
426 427 4.516195 GTCCTCTTCGGCGCCCTC 62.516 72.222 23.46 0.00 0.00 4.30
429 430 4.516195 GAGGTCCTCTTCGGCGCC 62.516 72.222 19.07 19.07 0.00 6.53
430 431 3.418744 GAGAGGTCCTCTTCGGCGC 62.419 68.421 22.68 0.00 41.35 6.53
431 432 2.776913 GGAGAGGTCCTCTTCGGCG 61.777 68.421 22.68 0.00 41.35 6.46
432 433 3.212275 GGAGAGGTCCTCTTCGGC 58.788 66.667 22.68 9.63 41.35 5.54
440 441 3.256281 CTTTGGCAAGGAGAGGTCC 57.744 57.895 2.75 0.00 44.33 4.46
535 536 7.201410 CGTATAATTTGTCTTCTACGTGCAGTT 60.201 37.037 0.00 0.00 30.83 3.16
536 537 6.252869 CGTATAATTTGTCTTCTACGTGCAGT 59.747 38.462 0.00 0.00 30.83 4.40
537 538 6.628187 CGTATAATTTGTCTTCTACGTGCAG 58.372 40.000 0.00 0.00 30.83 4.41
547 548 3.555956 CGAGCCAGCGTATAATTTGTCTT 59.444 43.478 0.00 0.00 0.00 3.01
573 574 4.963953 CGAATCGTGATTATTTCCAACAGC 59.036 41.667 0.00 0.00 0.00 4.40
577 578 4.938832 ACACCGAATCGTGATTATTTCCAA 59.061 37.500 0.82 0.00 37.20 3.53
579 580 4.025145 GGACACCGAATCGTGATTATTTCC 60.025 45.833 0.82 0.00 37.20 3.13
580 581 4.025145 GGGACACCGAATCGTGATTATTTC 60.025 45.833 0.82 0.00 37.20 2.17
582 583 3.134081 AGGGACACCGAATCGTGATTATT 59.866 43.478 0.82 0.00 43.47 1.40
583 584 2.698797 AGGGACACCGAATCGTGATTAT 59.301 45.455 0.82 0.00 43.47 1.28
584 585 2.104967 AGGGACACCGAATCGTGATTA 58.895 47.619 0.82 0.00 43.47 1.75
585 586 0.902531 AGGGACACCGAATCGTGATT 59.097 50.000 0.82 0.00 43.47 2.57
586 587 0.175760 CAGGGACACCGAATCGTGAT 59.824 55.000 0.82 0.00 43.47 3.06
587 588 1.183030 ACAGGGACACCGAATCGTGA 61.183 55.000 0.82 0.00 43.47 4.35
588 589 0.736325 GACAGGGACACCGAATCGTG 60.736 60.000 0.82 2.90 43.47 4.35
589 590 1.590147 GACAGGGACACCGAATCGT 59.410 57.895 0.82 0.00 43.47 3.73
590 591 1.153628 GGACAGGGACACCGAATCG 60.154 63.158 0.00 0.00 43.47 3.34
591 592 1.221021 GGGACAGGGACACCGAATC 59.779 63.158 0.00 0.00 43.47 2.52
592 593 3.400188 GGGACAGGGACACCGAAT 58.600 61.111 0.00 0.00 43.47 3.34
596 597 2.976356 GTACGGGACAGGGACACC 59.024 66.667 0.00 0.00 0.00 4.16
597 598 2.570181 CGTACGGGACAGGGACAC 59.430 66.667 7.57 0.00 0.00 3.67
598 599 2.677524 CCGTACGGGACAGGGACA 60.678 66.667 27.00 0.00 38.47 4.02
599 600 2.361610 TCCGTACGGGACAGGGAC 60.362 66.667 32.80 0.00 40.94 4.46
817 818 6.252869 CGTATAATTTGTCTTCTACGTGCAGT 59.747 38.462 0.00 0.00 30.83 4.40
818 819 6.628187 CGTATAATTTGTCTTCTACGTGCAG 58.372 40.000 0.00 0.00 30.83 4.41
819 820 5.005012 GCGTATAATTTGTCTTCTACGTGCA 59.995 40.000 0.00 0.00 35.12 4.57
820 821 5.231568 AGCGTATAATTTGTCTTCTACGTGC 59.768 40.000 0.00 0.00 35.12 5.34
821 822 6.291637 CCAGCGTATAATTTGTCTTCTACGTG 60.292 42.308 0.00 0.00 35.12 4.49
822 823 5.747197 CCAGCGTATAATTTGTCTTCTACGT 59.253 40.000 0.00 0.00 35.12 3.57
823 824 5.332355 GCCAGCGTATAATTTGTCTTCTACG 60.332 44.000 0.00 0.00 35.51 3.51
824 825 5.753921 AGCCAGCGTATAATTTGTCTTCTAC 59.246 40.000 0.00 0.00 0.00 2.59
825 826 5.914033 AGCCAGCGTATAATTTGTCTTCTA 58.086 37.500 0.00 0.00 0.00 2.10
826 827 4.770795 AGCCAGCGTATAATTTGTCTTCT 58.229 39.130 0.00 0.00 0.00 2.85
827 828 4.318121 CGAGCCAGCGTATAATTTGTCTTC 60.318 45.833 0.00 0.00 0.00 2.87
828 829 3.555956 CGAGCCAGCGTATAATTTGTCTT 59.444 43.478 0.00 0.00 0.00 3.01
829 830 3.123804 CGAGCCAGCGTATAATTTGTCT 58.876 45.455 0.00 0.00 0.00 3.41
830 831 2.221055 CCGAGCCAGCGTATAATTTGTC 59.779 50.000 0.00 0.00 0.00 3.18
831 832 2.210116 CCGAGCCAGCGTATAATTTGT 58.790 47.619 0.00 0.00 0.00 2.83
832 833 1.069906 GCCGAGCCAGCGTATAATTTG 60.070 52.381 0.00 0.00 0.00 2.32
833 834 1.226746 GCCGAGCCAGCGTATAATTT 58.773 50.000 0.00 0.00 0.00 1.82
834 835 2.914379 GCCGAGCCAGCGTATAATT 58.086 52.632 0.00 0.00 0.00 1.40
835 836 4.675404 GCCGAGCCAGCGTATAAT 57.325 55.556 0.00 0.00 0.00 1.28
847 848 0.742990 TATTTCCAACAGCGGCCGAG 60.743 55.000 33.48 23.15 0.00 4.63
848 849 0.321741 TTATTTCCAACAGCGGCCGA 60.322 50.000 33.48 4.09 0.00 5.54
849 850 0.738389 ATTATTTCCAACAGCGGCCG 59.262 50.000 24.05 24.05 0.00 6.13
850 851 1.748493 TGATTATTTCCAACAGCGGCC 59.252 47.619 0.00 0.00 0.00 6.13
851 852 2.791158 CGTGATTATTTCCAACAGCGGC 60.791 50.000 0.00 0.00 0.00 6.53
852 853 2.675844 TCGTGATTATTTCCAACAGCGG 59.324 45.455 0.00 0.00 0.00 5.52
853 854 4.335082 TTCGTGATTATTTCCAACAGCG 57.665 40.909 0.00 0.00 0.00 5.18
854 855 5.739161 GTGATTCGTGATTATTTCCAACAGC 59.261 40.000 0.00 0.00 0.00 4.40
895 896 2.550456 TACGGGACAGGGACAGGGA 61.550 63.158 0.00 0.00 0.00 4.20
896 897 2.038329 TACGGGACAGGGACAGGG 59.962 66.667 0.00 0.00 0.00 4.45
897 898 2.707849 CGTACGGGACAGGGACAGG 61.708 68.421 7.57 0.00 0.00 4.00
898 899 2.707849 CCGTACGGGACAGGGACAG 61.708 68.421 27.00 0.00 38.47 3.51
1103 1155 3.518003 GCAGATGCTTCCGCCAAT 58.482 55.556 0.00 0.00 38.21 3.16
1256 1326 1.367840 GTGACCAGCAGAAGGACGT 59.632 57.895 0.00 0.00 0.00 4.34
1257 1327 1.734477 CGTGACCAGCAGAAGGACG 60.734 63.158 0.00 0.00 0.00 4.79
1258 1328 0.389166 CTCGTGACCAGCAGAAGGAC 60.389 60.000 0.00 0.00 0.00 3.85
1259 1329 0.539669 TCTCGTGACCAGCAGAAGGA 60.540 55.000 0.00 0.00 0.00 3.36
1261 1331 1.203287 TCATCTCGTGACCAGCAGAAG 59.797 52.381 0.00 0.00 0.00 2.85
1263 1333 1.203287 CTTCATCTCGTGACCAGCAGA 59.797 52.381 0.00 0.00 36.32 4.26
1265 1335 1.067565 GTCTTCATCTCGTGACCAGCA 60.068 52.381 0.00 0.00 36.32 4.41
1266 1336 1.634702 GTCTTCATCTCGTGACCAGC 58.365 55.000 0.00 0.00 36.32 4.85
1329 1399 5.190342 CAAGATATCAAACACATGCGTACG 58.810 41.667 11.84 11.84 0.00 3.67
1475 1570 8.473358 TGAGGAAAACCGATATGTAATCTAGA 57.527 34.615 0.00 0.00 0.00 2.43
1698 1795 1.878069 CGCATTCGATCGTCAGGCA 60.878 57.895 15.94 0.00 38.10 4.75
2000 2100 5.598830 ACAGTCCGTATAGATGAAATGGAGT 59.401 40.000 0.00 0.00 33.16 3.85
2123 2223 1.066858 TCCTTGTTCAGATCCTCGCAC 60.067 52.381 0.00 0.00 0.00 5.34
2332 2433 2.097142 CCTTTTGTAGCTGCTCATGCTC 59.903 50.000 4.91 0.00 41.46 4.26
2466 2567 9.435802 GATAAGAGTGCGGTATATATAGTTTCG 57.564 37.037 0.00 0.00 0.00 3.46
2475 2576 5.706369 ACGAGAAGATAAGAGTGCGGTATAT 59.294 40.000 0.00 0.00 0.00 0.86
2766 3233 4.698304 CGCCCTTTAATTAGAGTTTGGTCA 59.302 41.667 2.63 0.00 0.00 4.02
2818 3285 9.634021 GAAATCTTTAAGAATGGAGGGAGTATT 57.366 33.333 0.00 0.00 0.00 1.89
2819 3286 8.781951 TGAAATCTTTAAGAATGGAGGGAGTAT 58.218 33.333 0.00 0.00 0.00 2.12
2820 3287 8.158025 TGAAATCTTTAAGAATGGAGGGAGTA 57.842 34.615 0.00 0.00 0.00 2.59
2821 3288 7.032598 TGAAATCTTTAAGAATGGAGGGAGT 57.967 36.000 0.00 0.00 0.00 3.85
2822 3289 7.944729 TTGAAATCTTTAAGAATGGAGGGAG 57.055 36.000 0.00 0.00 0.00 4.30
2823 3290 8.752187 CATTTGAAATCTTTAAGAATGGAGGGA 58.248 33.333 0.00 0.00 0.00 4.20
2824 3291 7.983484 CCATTTGAAATCTTTAAGAATGGAGGG 59.017 37.037 13.10 0.80 42.78 4.30
2825 3292 8.752187 TCCATTTGAAATCTTTAAGAATGGAGG 58.248 33.333 15.74 5.24 43.46 4.30
2827 3294 9.312904 ACTCCATTTGAAATCTTTAAGAATGGA 57.687 29.630 17.63 17.63 45.09 3.41
2831 3298 9.581289 TGGTACTCCATTTGAAATCTTTAAGAA 57.419 29.630 0.00 0.00 39.03 2.52
2832 3299 9.010029 GTGGTACTCCATTTGAAATCTTTAAGA 57.990 33.333 0.00 0.00 46.20 2.10
2833 3300 8.792633 TGTGGTACTCCATTTGAAATCTTTAAG 58.207 33.333 0.00 0.00 46.20 1.85
2834 3301 8.698973 TGTGGTACTCCATTTGAAATCTTTAA 57.301 30.769 0.00 0.00 46.20 1.52
2835 3302 8.877864 ATGTGGTACTCCATTTGAAATCTTTA 57.122 30.769 0.00 0.00 46.20 1.85
2836 3303 7.781324 ATGTGGTACTCCATTTGAAATCTTT 57.219 32.000 0.00 0.00 46.20 2.52
2837 3304 7.065803 CGTATGTGGTACTCCATTTGAAATCTT 59.934 37.037 3.69 0.00 46.20 2.40
2838 3305 6.538742 CGTATGTGGTACTCCATTTGAAATCT 59.461 38.462 3.69 0.00 46.20 2.40
2839 3306 6.238374 CCGTATGTGGTACTCCATTTGAAATC 60.238 42.308 3.69 0.00 46.20 2.17
2840 3307 5.588648 CCGTATGTGGTACTCCATTTGAAAT 59.411 40.000 3.69 0.00 46.20 2.17
2841 3308 4.938832 CCGTATGTGGTACTCCATTTGAAA 59.061 41.667 3.69 0.00 46.20 2.69
2842 3309 4.223255 TCCGTATGTGGTACTCCATTTGAA 59.777 41.667 3.69 0.00 46.20 2.69
2843 3310 3.770388 TCCGTATGTGGTACTCCATTTGA 59.230 43.478 3.69 0.00 46.20 2.69
2844 3311 4.131649 TCCGTATGTGGTACTCCATTTG 57.868 45.455 3.69 0.00 46.20 2.32
2845 3312 4.163458 ACATCCGTATGTGGTACTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
2846 3313 3.709653 ACATCCGTATGTGGTACTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
2847 3314 3.305720 ACATCCGTATGTGGTACTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
2848 3315 2.742348 ACATCCGTATGTGGTACTCCA 58.258 47.619 0.00 0.00 44.79 3.86
2849 3316 6.770746 ATATACATCCGTATGTGGTACTCC 57.229 41.667 3.56 0.00 45.99 3.85
2850 3317 8.610896 GTCTATATACATCCGTATGTGGTACTC 58.389 40.741 3.56 0.00 45.99 2.59
2851 3318 8.105197 TGTCTATATACATCCGTATGTGGTACT 58.895 37.037 3.56 0.00 45.99 2.73
2852 3319 8.272545 TGTCTATATACATCCGTATGTGGTAC 57.727 38.462 3.56 0.00 45.99 3.34
2854 3321 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2882 3349 9.507329 AGCAAAATGAGTGAATCTAAACTCTAA 57.493 29.630 4.62 0.00 42.72 2.10
2883 3350 9.155975 GAGCAAAATGAGTGAATCTAAACTCTA 57.844 33.333 4.62 0.00 42.72 2.43
2884 3351 7.120432 GGAGCAAAATGAGTGAATCTAAACTCT 59.880 37.037 4.62 0.00 42.72 3.24
2885 3352 7.247019 GGAGCAAAATGAGTGAATCTAAACTC 58.753 38.462 0.00 0.00 42.61 3.01
2886 3353 6.128172 CGGAGCAAAATGAGTGAATCTAAACT 60.128 38.462 0.00 0.00 0.00 2.66
2887 3354 6.024049 CGGAGCAAAATGAGTGAATCTAAAC 58.976 40.000 0.00 0.00 0.00 2.01
2888 3355 5.705441 ACGGAGCAAAATGAGTGAATCTAAA 59.295 36.000 0.00 0.00 0.00 1.85
2889 3356 5.245531 ACGGAGCAAAATGAGTGAATCTAA 58.754 37.500 0.00 0.00 0.00 2.10
2890 3357 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2891 3358 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2892 3359 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2893 3360 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2894 3361 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2895 3362 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2896 3363 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2897 3364 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2898 3365 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2899 3366 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2900 3367 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2901 3368 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2902 3369 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2903 3370 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2904 3371 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2905 3372 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2906 3373 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2907 3374 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2908 3375 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2909 3376 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2910 3377 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2911 3378 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2913 3380 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
2914 3381 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
2940 3407 8.808092 TCCATCCGTTCCTAAATATTTGTTTTT 58.192 29.630 11.05 0.00 0.00 1.94
2941 3408 8.356000 TCCATCCGTTCCTAAATATTTGTTTT 57.644 30.769 11.05 0.00 0.00 2.43
2942 3409 7.614192 ACTCCATCCGTTCCTAAATATTTGTTT 59.386 33.333 11.05 0.00 0.00 2.83
2943 3410 7.116736 ACTCCATCCGTTCCTAAATATTTGTT 58.883 34.615 11.05 0.00 0.00 2.83
2944 3411 6.659824 ACTCCATCCGTTCCTAAATATTTGT 58.340 36.000 11.05 0.00 0.00 2.83
2945 3412 8.848474 ATACTCCATCCGTTCCTAAATATTTG 57.152 34.615 11.05 1.40 0.00 2.32
2948 3415 9.488762 TCATATACTCCATCCGTTCCTAAATAT 57.511 33.333 0.00 0.00 0.00 1.28
2949 3416 8.888836 TCATATACTCCATCCGTTCCTAAATA 57.111 34.615 0.00 0.00 0.00 1.40
2950 3417 7.792364 TCATATACTCCATCCGTTCCTAAAT 57.208 36.000 0.00 0.00 0.00 1.40
2951 3418 7.606135 TTCATATACTCCATCCGTTCCTAAA 57.394 36.000 0.00 0.00 0.00 1.85
2952 3419 7.289317 ACTTTCATATACTCCATCCGTTCCTAA 59.711 37.037 0.00 0.00 0.00 2.69
2953 3420 6.781014 ACTTTCATATACTCCATCCGTTCCTA 59.219 38.462 0.00 0.00 0.00 2.94
2954 3421 5.602978 ACTTTCATATACTCCATCCGTTCCT 59.397 40.000 0.00 0.00 0.00 3.36
2955 3422 5.696724 CACTTTCATATACTCCATCCGTTCC 59.303 44.000 0.00 0.00 0.00 3.62
2956 3423 6.201044 CACACTTTCATATACTCCATCCGTTC 59.799 42.308 0.00 0.00 0.00 3.95
2957 3424 6.049149 CACACTTTCATATACTCCATCCGTT 58.951 40.000 0.00 0.00 0.00 4.44
2958 3425 5.601662 CACACTTTCATATACTCCATCCGT 58.398 41.667 0.00 0.00 0.00 4.69
2959 3426 4.449068 GCACACTTTCATATACTCCATCCG 59.551 45.833 0.00 0.00 0.00 4.18
2960 3427 5.368145 TGCACACTTTCATATACTCCATCC 58.632 41.667 0.00 0.00 0.00 3.51
2961 3428 6.925610 TTGCACACTTTCATATACTCCATC 57.074 37.500 0.00 0.00 0.00 3.51
2962 3429 6.183360 CGTTTGCACACTTTCATATACTCCAT 60.183 38.462 0.87 0.00 0.00 3.41
2963 3430 5.121611 CGTTTGCACACTTTCATATACTCCA 59.878 40.000 0.87 0.00 0.00 3.86
2964 3431 5.350365 TCGTTTGCACACTTTCATATACTCC 59.650 40.000 0.87 0.00 0.00 3.85
2965 3432 6.403333 TCGTTTGCACACTTTCATATACTC 57.597 37.500 0.87 0.00 0.00 2.59
2966 3433 6.985188 ATCGTTTGCACACTTTCATATACT 57.015 33.333 0.87 0.00 0.00 2.12
2967 3434 6.468956 CCAATCGTTTGCACACTTTCATATAC 59.531 38.462 0.87 0.00 0.00 1.47
3029 3497 4.704540 TCCATACCGATTGCACTTCAAAAT 59.295 37.500 0.00 0.00 38.34 1.82
3083 3551 1.133025 GAAATGGTTCACGGAGGCATG 59.867 52.381 0.00 0.00 33.61 4.06
3288 3756 7.091443 AGTGTTACGAAGTTGGAGAGAAATAG 58.909 38.462 0.00 0.00 37.78 1.73
3337 3805 4.959839 ACAAAGGTTACACACAGGGAAATT 59.040 37.500 0.00 0.00 0.00 1.82
3343 3811 4.156922 TGTTCAACAAAGGTTACACACAGG 59.843 41.667 0.00 0.00 34.87 4.00
3405 3873 9.325198 GTTTATTCAAAAAGAGTCAAAACCCAT 57.675 29.630 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.