Multiple sequence alignment - TraesCS5B01G472000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G472000 chr5B 100.000 2639 0 0 1 2639 645064000 645061362 0.000000e+00 4874
1 TraesCS5B01G472000 chr5B 85.588 1582 194 13 1074 2623 646627111 646628690 0.000000e+00 1628
2 TraesCS5B01G472000 chr5B 82.892 1134 163 24 847 1959 645993331 645992208 0.000000e+00 990
3 TraesCS5B01G472000 chr5B 84.334 983 147 4 984 1959 646376137 646377119 0.000000e+00 955
4 TraesCS5B01G472000 chr5B 81.066 713 85 15 1951 2637 646267715 646268403 8.370000e-145 523
5 TraesCS5B01G472000 chr5A 94.438 1798 88 6 845 2639 641781738 641779950 0.000000e+00 2756
6 TraesCS5B01G472000 chr5A 83.838 1850 238 26 826 2639 642905479 642907303 0.000000e+00 1703
7 TraesCS5B01G472000 chr5A 82.275 1134 172 20 844 1959 642502593 642503715 0.000000e+00 953
8 TraesCS5B01G472000 chr5A 85.974 385 19 16 431 814 641782085 641781735 1.920000e-101 379
9 TraesCS5B01G472000 chr5A 86.760 287 37 1 1 286 641844215 641843929 4.240000e-83 318
10 TraesCS5B01G472000 chr5A 86.722 241 30 2 2346 2586 642697267 642697505 1.560000e-67 267
11 TraesCS5B01G472000 chr5D 84.719 1852 232 23 826 2639 514515060 514516898 0.000000e+00 1805
12 TraesCS5B01G472000 chr5D 82.436 1133 175 19 844 1959 514294477 514295602 0.000000e+00 968
13 TraesCS5B01G472000 chr5D 84.678 979 133 11 990 1959 514412822 514411852 0.000000e+00 961
14 TraesCS5B01G472000 chr5D 82.213 714 79 18 1951 2639 514295624 514296314 2.950000e-159 571
15 TraesCS5B01G472000 chr5D 84.397 141 17 4 146 285 129535084 129534948 1.650000e-27 134
16 TraesCS5B01G472000 chr3D 78.058 278 56 5 1 275 603434144 603434419 1.260000e-38 171
17 TraesCS5B01G472000 chr2D 78.182 275 54 6 1 273 606408188 606408458 1.260000e-38 171
18 TraesCS5B01G472000 chr2D 77.368 190 35 7 74 259 524046653 524046468 3.590000e-19 106
19 TraesCS5B01G472000 chr3B 77.143 280 54 7 2 273 58856628 58856351 1.260000e-33 154
20 TraesCS5B01G472000 chr3B 74.340 265 60 7 21 281 161151773 161152033 3.590000e-19 106
21 TraesCS5B01G472000 chr6D 76.667 210 44 4 74 280 267726927 267726720 7.720000e-21 111
22 TraesCS5B01G472000 chr6D 74.532 267 56 12 21 281 422614448 422614708 3.590000e-19 106
23 TraesCS5B01G472000 chr4D 78.235 170 33 4 75 243 367755698 367755532 3.590000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G472000 chr5B 645061362 645064000 2638 True 4874.0 4874 100.0000 1 2639 1 chr5B.!!$R1 2638
1 TraesCS5B01G472000 chr5B 646627111 646628690 1579 False 1628.0 1628 85.5880 1074 2623 1 chr5B.!!$F3 1549
2 TraesCS5B01G472000 chr5B 645992208 645993331 1123 True 990.0 990 82.8920 847 1959 1 chr5B.!!$R2 1112
3 TraesCS5B01G472000 chr5B 646376137 646377119 982 False 955.0 955 84.3340 984 1959 1 chr5B.!!$F2 975
4 TraesCS5B01G472000 chr5B 646267715 646268403 688 False 523.0 523 81.0660 1951 2637 1 chr5B.!!$F1 686
5 TraesCS5B01G472000 chr5A 642905479 642907303 1824 False 1703.0 1703 83.8380 826 2639 1 chr5A.!!$F3 1813
6 TraesCS5B01G472000 chr5A 641779950 641782085 2135 True 1567.5 2756 90.2060 431 2639 2 chr5A.!!$R2 2208
7 TraesCS5B01G472000 chr5A 642502593 642503715 1122 False 953.0 953 82.2750 844 1959 1 chr5A.!!$F1 1115
8 TraesCS5B01G472000 chr5D 514515060 514516898 1838 False 1805.0 1805 84.7190 826 2639 1 chr5D.!!$F1 1813
9 TraesCS5B01G472000 chr5D 514411852 514412822 970 True 961.0 961 84.6780 990 1959 1 chr5D.!!$R2 969
10 TraesCS5B01G472000 chr5D 514294477 514296314 1837 False 769.5 968 82.3245 844 2639 2 chr5D.!!$F2 1795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.033601 TGTTGGCACCAGTGAAAGGT 60.034 50.0 0.99 0.0 40.85 3.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 1683 1.03703 CGGTTATGCATTGCCCTGGT 61.037 55.0 3.54 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.832615 ATCCCATACAGTAAACGTCCC 57.167 47.619 0.00 0.00 0.00 4.46
21 22 2.823959 TCCCATACAGTAAACGTCCCT 58.176 47.619 0.00 0.00 0.00 4.20
22 23 2.762327 TCCCATACAGTAAACGTCCCTC 59.238 50.000 0.00 0.00 0.00 4.30
23 24 2.159000 CCCATACAGTAAACGTCCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
24 25 2.498481 CCATACAGTAAACGTCCCTCCA 59.502 50.000 0.00 0.00 0.00 3.86
25 26 3.134081 CCATACAGTAAACGTCCCTCCAT 59.866 47.826 0.00 0.00 0.00 3.41
26 27 4.369182 CATACAGTAAACGTCCCTCCATC 58.631 47.826 0.00 0.00 0.00 3.51
27 28 2.253610 ACAGTAAACGTCCCTCCATCA 58.746 47.619 0.00 0.00 0.00 3.07
28 29 2.838202 ACAGTAAACGTCCCTCCATCAT 59.162 45.455 0.00 0.00 0.00 2.45
29 30 3.263425 ACAGTAAACGTCCCTCCATCATT 59.737 43.478 0.00 0.00 0.00 2.57
30 31 3.623060 CAGTAAACGTCCCTCCATCATTG 59.377 47.826 0.00 0.00 0.00 2.82
31 32 3.517901 AGTAAACGTCCCTCCATCATTGA 59.482 43.478 0.00 0.00 0.00 2.57
32 33 3.433306 AAACGTCCCTCCATCATTGAA 57.567 42.857 0.00 0.00 0.00 2.69
33 34 2.403252 ACGTCCCTCCATCATTGAAC 57.597 50.000 0.00 0.00 0.00 3.18
34 35 1.628340 ACGTCCCTCCATCATTGAACA 59.372 47.619 0.00 0.00 0.00 3.18
35 36 2.283298 CGTCCCTCCATCATTGAACAG 58.717 52.381 0.00 0.00 0.00 3.16
36 37 2.648059 GTCCCTCCATCATTGAACAGG 58.352 52.381 0.00 0.00 0.00 4.00
37 38 2.239654 GTCCCTCCATCATTGAACAGGA 59.760 50.000 9.45 7.69 0.00 3.86
38 39 2.507058 TCCCTCCATCATTGAACAGGAG 59.493 50.000 18.86 18.86 44.26 3.69
39 40 2.295885 CCTCCATCATTGAACAGGAGC 58.704 52.381 19.76 0.00 43.51 4.70
40 41 1.938577 CTCCATCATTGAACAGGAGCG 59.061 52.381 15.74 1.32 39.39 5.03
41 42 1.019673 CCATCATTGAACAGGAGCGG 58.980 55.000 0.00 0.00 0.00 5.52
42 43 1.407299 CCATCATTGAACAGGAGCGGA 60.407 52.381 0.00 0.00 0.00 5.54
43 44 1.667724 CATCATTGAACAGGAGCGGAC 59.332 52.381 0.00 0.00 0.00 4.79
44 45 0.684535 TCATTGAACAGGAGCGGACA 59.315 50.000 0.00 0.00 0.00 4.02
45 46 0.798776 CATTGAACAGGAGCGGACAC 59.201 55.000 0.00 0.00 0.00 3.67
46 47 0.321653 ATTGAACAGGAGCGGACACC 60.322 55.000 0.00 0.00 0.00 4.16
91 92 3.434319 CCGGTGCGCTGCTTCAAT 61.434 61.111 9.73 0.00 0.00 2.57
92 93 2.202388 CGGTGCGCTGCTTCAATG 60.202 61.111 9.73 0.00 0.00 2.82
93 94 2.956987 GGTGCGCTGCTTCAATGT 59.043 55.556 9.73 0.00 0.00 2.71
94 95 1.286880 GGTGCGCTGCTTCAATGTT 59.713 52.632 9.73 0.00 0.00 2.71
95 96 1.005294 GGTGCGCTGCTTCAATGTTG 61.005 55.000 9.73 0.00 0.00 3.33
96 97 1.005294 GTGCGCTGCTTCAATGTTGG 61.005 55.000 9.73 0.00 0.00 3.77
97 98 2.090524 GCGCTGCTTCAATGTTGGC 61.091 57.895 0.00 0.00 0.00 4.52
98 99 1.286570 CGCTGCTTCAATGTTGGCA 59.713 52.632 0.00 0.00 0.00 4.92
99 100 1.005294 CGCTGCTTCAATGTTGGCAC 61.005 55.000 0.00 0.00 0.00 5.01
100 101 0.668401 GCTGCTTCAATGTTGGCACC 60.668 55.000 0.00 0.00 0.00 5.01
101 102 0.675083 CTGCTTCAATGTTGGCACCA 59.325 50.000 0.00 0.00 0.00 4.17
102 103 0.675083 TGCTTCAATGTTGGCACCAG 59.325 50.000 0.00 0.00 0.00 4.00
103 104 0.675633 GCTTCAATGTTGGCACCAGT 59.324 50.000 0.00 0.00 0.00 4.00
104 105 1.603678 GCTTCAATGTTGGCACCAGTG 60.604 52.381 6.11 6.11 0.00 3.66
105 106 1.955778 CTTCAATGTTGGCACCAGTGA 59.044 47.619 11.18 11.18 35.36 3.41
106 107 2.064434 TCAATGTTGGCACCAGTGAA 57.936 45.000 12.79 0.00 34.36 3.18
107 108 2.382882 TCAATGTTGGCACCAGTGAAA 58.617 42.857 12.79 0.00 34.36 2.69
108 109 2.361757 TCAATGTTGGCACCAGTGAAAG 59.638 45.455 12.79 0.00 34.36 2.62
109 110 1.331214 ATGTTGGCACCAGTGAAAGG 58.669 50.000 0.99 0.00 0.00 3.11
110 111 0.033601 TGTTGGCACCAGTGAAAGGT 60.034 50.000 0.99 0.00 40.85 3.50
111 112 0.668535 GTTGGCACCAGTGAAAGGTC 59.331 55.000 0.99 0.00 37.23 3.85
112 113 0.817634 TTGGCACCAGTGAAAGGTCG 60.818 55.000 0.99 0.00 37.23 4.79
113 114 2.617274 GGCACCAGTGAAAGGTCGC 61.617 63.158 0.99 0.00 37.23 5.19
114 115 2.954753 GCACCAGTGAAAGGTCGCG 61.955 63.158 0.00 0.00 39.38 5.87
115 116 1.594293 CACCAGTGAAAGGTCGCGT 60.594 57.895 5.77 0.00 39.38 6.01
116 117 1.300697 ACCAGTGAAAGGTCGCGTC 60.301 57.895 5.77 0.00 39.38 5.19
117 118 1.006102 CCAGTGAAAGGTCGCGTCT 60.006 57.895 5.77 1.95 39.38 4.18
118 119 1.284982 CCAGTGAAAGGTCGCGTCTG 61.285 60.000 5.77 3.60 39.38 3.51
119 120 1.664965 AGTGAAAGGTCGCGTCTGC 60.665 57.895 5.77 2.61 39.38 4.26
120 121 1.664965 GTGAAAGGTCGCGTCTGCT 60.665 57.895 5.77 0.00 39.65 4.24
121 122 1.372997 TGAAAGGTCGCGTCTGCTC 60.373 57.895 5.77 6.79 39.65 4.26
122 123 1.080434 GAAAGGTCGCGTCTGCTCT 60.080 57.895 5.77 0.00 39.65 4.09
123 124 1.347817 GAAAGGTCGCGTCTGCTCTG 61.348 60.000 5.77 0.00 39.65 3.35
124 125 2.771763 AAAGGTCGCGTCTGCTCTGG 62.772 60.000 5.77 0.00 39.65 3.86
125 126 4.803426 GGTCGCGTCTGCTCTGGG 62.803 72.222 5.77 0.00 39.65 4.45
136 137 4.473520 CTCTGGGCCGGCGTCATT 62.474 66.667 22.54 0.00 0.00 2.57
137 138 3.078196 TCTGGGCCGGCGTCATTA 61.078 61.111 22.54 9.61 0.00 1.90
138 139 2.895372 CTGGGCCGGCGTCATTAC 60.895 66.667 22.54 3.85 0.00 1.89
139 140 3.673956 CTGGGCCGGCGTCATTACA 62.674 63.158 22.54 9.26 0.00 2.41
140 141 2.895372 GGGCCGGCGTCATTACAG 60.895 66.667 22.54 0.00 0.00 2.74
141 142 2.185867 GGCCGGCGTCATTACAGA 59.814 61.111 22.54 0.00 0.00 3.41
142 143 1.883084 GGCCGGCGTCATTACAGAG 60.883 63.158 22.54 0.00 0.00 3.35
143 144 2.526120 GCCGGCGTCATTACAGAGC 61.526 63.158 12.58 0.00 0.00 4.09
144 145 1.153647 CCGGCGTCATTACAGAGCA 60.154 57.895 6.01 0.00 0.00 4.26
145 146 1.148157 CCGGCGTCATTACAGAGCAG 61.148 60.000 6.01 0.00 0.00 4.24
146 147 1.756375 CGGCGTCATTACAGAGCAGC 61.756 60.000 0.00 0.00 0.00 5.25
147 148 1.432270 GGCGTCATTACAGAGCAGCC 61.432 60.000 0.00 0.00 36.32 4.85
148 149 1.756375 GCGTCATTACAGAGCAGCCG 61.756 60.000 0.00 0.00 0.00 5.52
149 150 1.756375 CGTCATTACAGAGCAGCCGC 61.756 60.000 0.00 0.00 38.99 6.53
163 164 2.586079 CCGCTCTACACCGGCATG 60.586 66.667 0.00 0.00 37.85 4.06
164 165 2.494445 CGCTCTACACCGGCATGA 59.506 61.111 0.00 0.00 0.00 3.07
165 166 1.153647 CGCTCTACACCGGCATGAA 60.154 57.895 0.00 0.00 0.00 2.57
166 167 0.530650 CGCTCTACACCGGCATGAAT 60.531 55.000 0.00 0.00 0.00 2.57
167 168 0.940126 GCTCTACACCGGCATGAATG 59.060 55.000 0.00 0.00 0.00 2.67
191 192 4.388499 GCTGGCGTCGGAAGGGAA 62.388 66.667 0.00 0.00 0.00 3.97
192 193 2.584608 CTGGCGTCGGAAGGGAAT 59.415 61.111 0.00 0.00 0.00 3.01
193 194 1.815421 CTGGCGTCGGAAGGGAATG 60.815 63.158 0.00 0.00 0.00 2.67
194 195 3.202706 GGCGTCGGAAGGGAATGC 61.203 66.667 0.00 0.00 0.00 3.56
195 196 2.435938 GCGTCGGAAGGGAATGCA 60.436 61.111 0.00 0.00 0.00 3.96
196 197 1.819632 GCGTCGGAAGGGAATGCAT 60.820 57.895 0.00 0.00 0.00 3.96
197 198 2.016961 CGTCGGAAGGGAATGCATG 58.983 57.895 0.00 0.00 0.00 4.06
198 199 0.744414 CGTCGGAAGGGAATGCATGT 60.744 55.000 0.00 0.00 0.00 3.21
199 200 0.734889 GTCGGAAGGGAATGCATGTG 59.265 55.000 0.00 0.00 0.00 3.21
200 201 0.394216 TCGGAAGGGAATGCATGTGG 60.394 55.000 0.00 0.00 0.00 4.17
201 202 1.386525 CGGAAGGGAATGCATGTGGG 61.387 60.000 0.00 0.00 0.00 4.61
202 203 1.679559 GGAAGGGAATGCATGTGGGC 61.680 60.000 0.00 0.00 0.00 5.36
203 204 2.008268 GAAGGGAATGCATGTGGGCG 62.008 60.000 0.00 0.00 36.28 6.13
204 205 2.440065 GGGAATGCATGTGGGCGA 60.440 61.111 0.00 0.00 36.28 5.54
205 206 2.484062 GGGAATGCATGTGGGCGAG 61.484 63.158 0.00 0.00 36.28 5.03
206 207 2.484062 GGAATGCATGTGGGCGAGG 61.484 63.158 0.00 0.00 36.28 4.63
207 208 1.451927 GAATGCATGTGGGCGAGGA 60.452 57.895 0.00 0.00 36.28 3.71
208 209 1.001020 AATGCATGTGGGCGAGGAA 60.001 52.632 0.00 0.00 36.28 3.36
209 210 1.033746 AATGCATGTGGGCGAGGAAG 61.034 55.000 0.00 0.00 36.28 3.46
210 211 2.825836 GCATGTGGGCGAGGAAGG 60.826 66.667 0.00 0.00 0.00 3.46
211 212 2.989639 CATGTGGGCGAGGAAGGA 59.010 61.111 0.00 0.00 0.00 3.36
212 213 1.153289 CATGTGGGCGAGGAAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
213 214 1.306141 ATGTGGGCGAGGAAGGAGA 60.306 57.895 0.00 0.00 0.00 3.71
214 215 1.333636 ATGTGGGCGAGGAAGGAGAG 61.334 60.000 0.00 0.00 0.00 3.20
215 216 1.985116 GTGGGCGAGGAAGGAGAGT 60.985 63.158 0.00 0.00 0.00 3.24
216 217 1.229209 TGGGCGAGGAAGGAGAGTT 60.229 57.895 0.00 0.00 0.00 3.01
217 218 0.836400 TGGGCGAGGAAGGAGAGTTT 60.836 55.000 0.00 0.00 0.00 2.66
218 219 0.325272 GGGCGAGGAAGGAGAGTTTT 59.675 55.000 0.00 0.00 0.00 2.43
219 220 1.443802 GGCGAGGAAGGAGAGTTTTG 58.556 55.000 0.00 0.00 0.00 2.44
220 221 1.002087 GGCGAGGAAGGAGAGTTTTGA 59.998 52.381 0.00 0.00 0.00 2.69
221 222 2.342179 GCGAGGAAGGAGAGTTTTGAG 58.658 52.381 0.00 0.00 0.00 3.02
222 223 2.289133 GCGAGGAAGGAGAGTTTTGAGT 60.289 50.000 0.00 0.00 0.00 3.41
223 224 3.321497 CGAGGAAGGAGAGTTTTGAGTG 58.679 50.000 0.00 0.00 0.00 3.51
224 225 3.669536 GAGGAAGGAGAGTTTTGAGTGG 58.330 50.000 0.00 0.00 0.00 4.00
225 226 2.373502 AGGAAGGAGAGTTTTGAGTGGG 59.626 50.000 0.00 0.00 0.00 4.61
226 227 2.155279 GAAGGAGAGTTTTGAGTGGGC 58.845 52.381 0.00 0.00 0.00 5.36
227 228 0.402121 AGGAGAGTTTTGAGTGGGCC 59.598 55.000 0.00 0.00 0.00 5.80
228 229 0.110486 GGAGAGTTTTGAGTGGGCCA 59.890 55.000 0.00 0.00 0.00 5.36
229 230 1.528129 GAGAGTTTTGAGTGGGCCAG 58.472 55.000 6.40 0.00 0.00 4.85
230 231 0.111253 AGAGTTTTGAGTGGGCCAGG 59.889 55.000 6.40 0.00 0.00 4.45
231 232 0.895559 GAGTTTTGAGTGGGCCAGGG 60.896 60.000 6.40 0.00 0.00 4.45
232 233 1.152546 GTTTTGAGTGGGCCAGGGT 60.153 57.895 6.40 0.00 0.00 4.34
233 234 0.111639 GTTTTGAGTGGGCCAGGGTA 59.888 55.000 6.40 0.00 0.00 3.69
234 235 0.404040 TTTTGAGTGGGCCAGGGTAG 59.596 55.000 6.40 0.00 0.00 3.18
235 236 0.770557 TTTGAGTGGGCCAGGGTAGT 60.771 55.000 6.40 0.00 0.00 2.73
236 237 1.198759 TTGAGTGGGCCAGGGTAGTC 61.199 60.000 6.40 0.00 0.00 2.59
237 238 1.612442 GAGTGGGCCAGGGTAGTCA 60.612 63.158 6.40 0.00 0.00 3.41
238 239 1.613630 AGTGGGCCAGGGTAGTCAG 60.614 63.158 6.40 0.00 0.00 3.51
239 240 2.285368 TGGGCCAGGGTAGTCAGG 60.285 66.667 0.00 0.00 0.00 3.86
240 241 2.040606 GGGCCAGGGTAGTCAGGA 59.959 66.667 4.39 0.00 0.00 3.86
241 242 2.066999 GGGCCAGGGTAGTCAGGAG 61.067 68.421 4.39 0.00 0.00 3.69
242 243 2.736826 GGCCAGGGTAGTCAGGAGC 61.737 68.421 0.00 0.00 0.00 4.70
243 244 3.082579 GCCAGGGTAGTCAGGAGCG 62.083 68.421 0.00 0.00 0.00 5.03
244 245 2.427245 CCAGGGTAGTCAGGAGCGG 61.427 68.421 0.00 0.00 0.00 5.52
245 246 1.379977 CAGGGTAGTCAGGAGCGGA 60.380 63.158 0.00 0.00 0.00 5.54
246 247 1.380112 AGGGTAGTCAGGAGCGGAC 60.380 63.158 0.00 0.00 35.50 4.79
247 248 2.772691 GGGTAGTCAGGAGCGGACG 61.773 68.421 0.00 0.00 40.20 4.79
248 249 2.045131 GGTAGTCAGGAGCGGACGT 61.045 63.158 0.00 0.00 40.20 4.34
249 250 1.136984 GTAGTCAGGAGCGGACGTG 59.863 63.158 0.00 0.00 40.20 4.49
250 251 2.044555 TAGTCAGGAGCGGACGTGG 61.045 63.158 0.00 0.00 40.20 4.94
273 274 4.084888 GTCCGAACGCCCGCAAAG 62.085 66.667 0.00 0.00 0.00 2.77
285 286 4.716003 GCAAAGCGTCCCCTAGTT 57.284 55.556 0.00 0.00 0.00 2.24
286 287 2.171635 GCAAAGCGTCCCCTAGTTG 58.828 57.895 0.00 0.00 0.00 3.16
287 288 0.321298 GCAAAGCGTCCCCTAGTTGA 60.321 55.000 0.00 0.00 0.00 3.18
288 289 1.880646 GCAAAGCGTCCCCTAGTTGAA 60.881 52.381 0.00 0.00 0.00 2.69
289 290 2.711542 CAAAGCGTCCCCTAGTTGAAT 58.288 47.619 0.00 0.00 0.00 2.57
290 291 2.403252 AAGCGTCCCCTAGTTGAATG 57.597 50.000 0.00 0.00 0.00 2.67
291 292 1.568504 AGCGTCCCCTAGTTGAATGA 58.431 50.000 0.00 0.00 0.00 2.57
292 293 1.207329 AGCGTCCCCTAGTTGAATGAC 59.793 52.381 0.00 0.00 0.00 3.06
293 294 1.066430 GCGTCCCCTAGTTGAATGACA 60.066 52.381 0.00 0.00 0.00 3.58
294 295 2.893637 CGTCCCCTAGTTGAATGACAG 58.106 52.381 0.00 0.00 0.00 3.51
295 296 2.496070 CGTCCCCTAGTTGAATGACAGA 59.504 50.000 0.00 0.00 0.00 3.41
296 297 3.056107 CGTCCCCTAGTTGAATGACAGAA 60.056 47.826 0.00 0.00 0.00 3.02
297 298 4.254492 GTCCCCTAGTTGAATGACAGAAC 58.746 47.826 0.00 0.00 0.00 3.01
298 299 3.907474 TCCCCTAGTTGAATGACAGAACA 59.093 43.478 0.00 0.00 0.00 3.18
299 300 4.003648 CCCCTAGTTGAATGACAGAACAC 58.996 47.826 0.00 0.00 0.00 3.32
300 301 3.679980 CCCTAGTTGAATGACAGAACACG 59.320 47.826 0.00 0.00 0.00 4.49
301 302 4.307432 CCTAGTTGAATGACAGAACACGT 58.693 43.478 0.00 0.00 0.00 4.49
302 303 4.386049 CCTAGTTGAATGACAGAACACGTC 59.614 45.833 0.00 0.00 0.00 4.34
303 304 3.131396 AGTTGAATGACAGAACACGTCC 58.869 45.455 0.00 0.00 32.15 4.79
304 305 1.778334 TGAATGACAGAACACGTCCG 58.222 50.000 0.00 0.00 32.15 4.79
305 306 1.068474 GAATGACAGAACACGTCCGG 58.932 55.000 0.00 0.00 32.15 5.14
306 307 0.677288 AATGACAGAACACGTCCGGA 59.323 50.000 0.00 0.00 32.15 5.14
307 308 0.038526 ATGACAGAACACGTCCGGAC 60.039 55.000 25.28 25.28 32.15 4.79
308 309 1.372623 GACAGAACACGTCCGGACC 60.373 63.158 28.52 14.12 0.00 4.46
309 310 2.430244 CAGAACACGTCCGGACCG 60.430 66.667 28.52 23.77 0.00 4.79
310 311 2.908940 AGAACACGTCCGGACCGT 60.909 61.111 28.52 24.40 39.52 4.83
311 312 1.600636 AGAACACGTCCGGACCGTA 60.601 57.895 28.52 0.00 36.65 4.02
312 313 0.962356 AGAACACGTCCGGACCGTAT 60.962 55.000 28.52 15.95 36.65 3.06
313 314 0.799534 GAACACGTCCGGACCGTATG 60.800 60.000 28.52 21.80 36.65 2.39
314 315 2.103538 CACGTCCGGACCGTATGG 59.896 66.667 28.52 15.62 36.65 2.74
325 326 3.379650 CCGTATGGTCCGAATGCTT 57.620 52.632 0.00 0.00 0.00 3.91
326 327 0.937304 CCGTATGGTCCGAATGCTTG 59.063 55.000 0.00 0.00 0.00 4.01
327 328 1.651987 CGTATGGTCCGAATGCTTGT 58.348 50.000 0.00 0.00 0.00 3.16
328 329 1.327460 CGTATGGTCCGAATGCTTGTG 59.673 52.381 0.00 0.00 0.00 3.33
329 330 2.627945 GTATGGTCCGAATGCTTGTGA 58.372 47.619 0.00 0.00 0.00 3.58
330 331 1.453155 ATGGTCCGAATGCTTGTGAC 58.547 50.000 0.00 0.00 0.00 3.67
331 332 0.948623 TGGTCCGAATGCTTGTGACG 60.949 55.000 0.00 0.00 0.00 4.35
332 333 1.635663 GGTCCGAATGCTTGTGACGG 61.636 60.000 0.00 0.00 44.09 4.79
333 334 0.949105 GTCCGAATGCTTGTGACGGT 60.949 55.000 0.00 0.00 43.36 4.83
334 335 0.250124 TCCGAATGCTTGTGACGGTT 60.250 50.000 0.00 0.00 43.36 4.44
335 336 0.591170 CCGAATGCTTGTGACGGTTT 59.409 50.000 0.00 0.00 38.97 3.27
336 337 1.662876 CCGAATGCTTGTGACGGTTTG 60.663 52.381 0.00 0.00 38.97 2.93
337 338 1.262950 CGAATGCTTGTGACGGTTTGA 59.737 47.619 0.00 0.00 0.00 2.69
338 339 2.662791 CGAATGCTTGTGACGGTTTGAG 60.663 50.000 0.00 0.00 0.00 3.02
339 340 2.254546 ATGCTTGTGACGGTTTGAGA 57.745 45.000 0.00 0.00 0.00 3.27
340 341 1.581934 TGCTTGTGACGGTTTGAGAG 58.418 50.000 0.00 0.00 0.00 3.20
341 342 1.134521 TGCTTGTGACGGTTTGAGAGT 60.135 47.619 0.00 0.00 0.00 3.24
342 343 1.527311 GCTTGTGACGGTTTGAGAGTC 59.473 52.381 0.00 0.00 35.61 3.36
343 344 2.135933 CTTGTGACGGTTTGAGAGTCC 58.864 52.381 0.00 0.00 34.24 3.85
344 345 1.116308 TGTGACGGTTTGAGAGTCCA 58.884 50.000 0.00 0.00 34.24 4.02
345 346 1.483004 TGTGACGGTTTGAGAGTCCAA 59.517 47.619 0.00 0.00 34.24 3.53
346 347 2.135933 GTGACGGTTTGAGAGTCCAAG 58.864 52.381 0.00 0.00 34.24 3.61
347 348 1.760613 TGACGGTTTGAGAGTCCAAGT 59.239 47.619 0.00 0.00 34.24 3.16
348 349 2.169769 TGACGGTTTGAGAGTCCAAGTT 59.830 45.455 0.00 0.00 34.24 2.66
349 350 3.385433 TGACGGTTTGAGAGTCCAAGTTA 59.615 43.478 0.00 0.00 34.24 2.24
350 351 3.988517 GACGGTTTGAGAGTCCAAGTTAG 59.011 47.826 0.00 0.00 0.00 2.34
351 352 3.640029 ACGGTTTGAGAGTCCAAGTTAGA 59.360 43.478 0.00 0.00 0.00 2.10
352 353 4.238514 CGGTTTGAGAGTCCAAGTTAGAG 58.761 47.826 0.00 0.00 0.00 2.43
353 354 4.022242 CGGTTTGAGAGTCCAAGTTAGAGA 60.022 45.833 0.00 0.00 0.00 3.10
354 355 5.336849 CGGTTTGAGAGTCCAAGTTAGAGAT 60.337 44.000 0.00 0.00 0.00 2.75
355 356 5.872070 GGTTTGAGAGTCCAAGTTAGAGATG 59.128 44.000 0.00 0.00 0.00 2.90
356 357 4.727507 TGAGAGTCCAAGTTAGAGATGC 57.272 45.455 0.00 0.00 0.00 3.91
357 358 3.449018 TGAGAGTCCAAGTTAGAGATGCC 59.551 47.826 0.00 0.00 0.00 4.40
358 359 2.769095 AGAGTCCAAGTTAGAGATGCCC 59.231 50.000 0.00 0.00 0.00 5.36
359 360 2.769095 GAGTCCAAGTTAGAGATGCCCT 59.231 50.000 0.00 0.00 0.00 5.19
360 361 2.503356 AGTCCAAGTTAGAGATGCCCTG 59.497 50.000 0.00 0.00 0.00 4.45
361 362 2.501723 GTCCAAGTTAGAGATGCCCTGA 59.498 50.000 0.00 0.00 0.00 3.86
362 363 3.135530 GTCCAAGTTAGAGATGCCCTGAT 59.864 47.826 0.00 0.00 0.00 2.90
363 364 4.345257 GTCCAAGTTAGAGATGCCCTGATA 59.655 45.833 0.00 0.00 0.00 2.15
364 365 4.968719 TCCAAGTTAGAGATGCCCTGATAA 59.031 41.667 0.00 0.00 0.00 1.75
365 366 5.070981 TCCAAGTTAGAGATGCCCTGATAAG 59.929 44.000 0.00 0.00 0.00 1.73
366 367 5.163258 CCAAGTTAGAGATGCCCTGATAAGT 60.163 44.000 0.00 0.00 0.00 2.24
367 368 5.799827 AGTTAGAGATGCCCTGATAAGTC 57.200 43.478 0.00 0.00 0.00 3.01
368 369 5.463154 AGTTAGAGATGCCCTGATAAGTCT 58.537 41.667 0.00 0.00 0.00 3.24
369 370 5.902431 AGTTAGAGATGCCCTGATAAGTCTT 59.098 40.000 0.00 0.00 0.00 3.01
370 371 6.385467 AGTTAGAGATGCCCTGATAAGTCTTT 59.615 38.462 0.00 0.00 0.00 2.52
371 372 5.289083 AGAGATGCCCTGATAAGTCTTTC 57.711 43.478 0.00 0.00 0.00 2.62
372 373 4.102367 AGAGATGCCCTGATAAGTCTTTCC 59.898 45.833 0.00 0.00 0.00 3.13
373 374 3.782523 AGATGCCCTGATAAGTCTTTCCA 59.217 43.478 0.00 0.00 0.00 3.53
374 375 4.228210 AGATGCCCTGATAAGTCTTTCCAA 59.772 41.667 0.00 0.00 0.00 3.53
375 376 4.380843 TGCCCTGATAAGTCTTTCCAAA 57.619 40.909 0.00 0.00 0.00 3.28
376 377 4.735369 TGCCCTGATAAGTCTTTCCAAAA 58.265 39.130 0.00 0.00 0.00 2.44
377 378 5.332743 TGCCCTGATAAGTCTTTCCAAAAT 58.667 37.500 0.00 0.00 0.00 1.82
378 379 6.489603 TGCCCTGATAAGTCTTTCCAAAATA 58.510 36.000 0.00 0.00 0.00 1.40
379 380 6.951198 TGCCCTGATAAGTCTTTCCAAAATAA 59.049 34.615 0.00 0.00 0.00 1.40
380 381 7.453126 TGCCCTGATAAGTCTTTCCAAAATAAA 59.547 33.333 0.00 0.00 0.00 1.40
381 382 8.311109 GCCCTGATAAGTCTTTCCAAAATAAAA 58.689 33.333 0.00 0.00 0.00 1.52
388 389 8.766000 AAGTCTTTCCAAAATAAAAACACGTT 57.234 26.923 0.00 0.00 0.00 3.99
389 390 8.766000 AGTCTTTCCAAAATAAAAACACGTTT 57.234 26.923 0.00 0.00 0.00 3.60
390 391 8.652463 AGTCTTTCCAAAATAAAAACACGTTTG 58.348 29.630 0.00 0.00 32.36 2.93
391 392 8.436970 GTCTTTCCAAAATAAAAACACGTTTGT 58.563 29.630 0.00 0.00 37.67 2.83
404 405 4.349663 CACGTTTGTGTTCTCTTGGAAA 57.650 40.909 0.00 0.00 41.34 3.13
405 406 4.728534 CACGTTTGTGTTCTCTTGGAAAA 58.271 39.130 0.00 0.00 41.34 2.29
406 407 5.339990 CACGTTTGTGTTCTCTTGGAAAAT 58.660 37.500 0.00 0.00 41.34 1.82
407 408 5.229887 CACGTTTGTGTTCTCTTGGAAAATG 59.770 40.000 0.00 0.00 41.34 2.32
408 409 5.124776 ACGTTTGTGTTCTCTTGGAAAATGA 59.875 36.000 0.00 0.00 35.51 2.57
409 410 6.183360 ACGTTTGTGTTCTCTTGGAAAATGAT 60.183 34.615 0.00 0.00 35.51 2.45
410 411 6.360681 CGTTTGTGTTCTCTTGGAAAATGATC 59.639 38.462 0.00 0.00 35.51 2.92
411 412 7.428826 GTTTGTGTTCTCTTGGAAAATGATCT 58.571 34.615 0.00 0.00 35.51 2.75
412 413 6.808008 TGTGTTCTCTTGGAAAATGATCTC 57.192 37.500 0.00 0.00 35.51 2.75
413 414 6.537355 TGTGTTCTCTTGGAAAATGATCTCT 58.463 36.000 0.00 0.00 35.51 3.10
414 415 6.429078 TGTGTTCTCTTGGAAAATGATCTCTG 59.571 38.462 0.00 0.00 35.51 3.35
415 416 5.942236 TGTTCTCTTGGAAAATGATCTCTGG 59.058 40.000 0.00 0.00 35.51 3.86
416 417 5.768980 TCTCTTGGAAAATGATCTCTGGT 57.231 39.130 0.00 0.00 0.00 4.00
417 418 5.494724 TCTCTTGGAAAATGATCTCTGGTG 58.505 41.667 0.00 0.00 0.00 4.17
418 419 5.249163 TCTCTTGGAAAATGATCTCTGGTGA 59.751 40.000 0.00 0.00 0.00 4.02
419 420 6.069789 TCTCTTGGAAAATGATCTCTGGTGAT 60.070 38.462 0.00 0.00 0.00 3.06
420 421 6.487828 TCTTGGAAAATGATCTCTGGTGATT 58.512 36.000 0.00 0.00 0.00 2.57
421 422 6.376299 TCTTGGAAAATGATCTCTGGTGATTG 59.624 38.462 0.00 0.00 0.00 2.67
422 423 4.400251 TGGAAAATGATCTCTGGTGATTGC 59.600 41.667 0.00 0.00 0.00 3.56
423 424 4.202090 GGAAAATGATCTCTGGTGATTGCC 60.202 45.833 0.00 0.00 0.00 4.52
424 425 2.653234 ATGATCTCTGGTGATTGCCC 57.347 50.000 0.00 0.00 0.00 5.36
425 426 1.588239 TGATCTCTGGTGATTGCCCT 58.412 50.000 0.00 0.00 0.00 5.19
426 427 1.211212 TGATCTCTGGTGATTGCCCTG 59.789 52.381 0.00 0.00 0.00 4.45
427 428 0.549950 ATCTCTGGTGATTGCCCTGG 59.450 55.000 0.00 0.00 0.00 4.45
428 429 0.547471 TCTCTGGTGATTGCCCTGGA 60.547 55.000 0.00 0.00 0.00 3.86
429 430 0.549950 CTCTGGTGATTGCCCTGGAT 59.450 55.000 0.00 0.00 0.00 3.41
451 452 0.039798 TGTTACGCAGGAGTCGTGTC 60.040 55.000 13.97 6.05 40.69 3.67
494 495 2.944557 CGGTGAGATCGTGACGCG 60.945 66.667 3.53 3.53 43.01 6.01
536 537 2.351276 GGTCGGTGCAGGATGGTT 59.649 61.111 0.00 0.00 35.86 3.67
540 541 0.605319 TCGGTGCAGGATGGTTGTTC 60.605 55.000 0.00 0.00 35.86 3.18
547 548 0.321653 AGGATGGTTGTTCGTGAGGC 60.322 55.000 0.00 0.00 0.00 4.70
553 554 0.936297 GTTGTTCGTGAGGCGTACGT 60.936 55.000 17.90 0.00 42.57 3.57
554 555 0.935831 TTGTTCGTGAGGCGTACGTG 60.936 55.000 17.90 0.61 42.57 4.49
555 556 2.429571 TTCGTGAGGCGTACGTGC 60.430 61.111 17.90 7.14 41.91 5.34
556 557 2.911484 TTCGTGAGGCGTACGTGCT 61.911 57.895 17.90 0.00 41.91 4.40
557 558 2.791396 TTCGTGAGGCGTACGTGCTC 62.791 60.000 17.90 6.64 41.91 4.26
558 559 2.506438 GTGAGGCGTACGTGCTCC 60.506 66.667 17.90 4.29 34.52 4.70
559 560 3.755628 TGAGGCGTACGTGCTCCC 61.756 66.667 17.90 8.96 34.52 4.30
560 561 4.849329 GAGGCGTACGTGCTCCCG 62.849 72.222 17.90 0.00 34.52 5.14
568 569 4.072088 CGTGCTCCCGCGTTTGAC 62.072 66.667 4.92 0.00 39.95 3.18
569 570 4.072088 GTGCTCCCGCGTTTGACG 62.072 66.667 4.92 0.00 45.88 4.35
575 576 4.084888 CCGCGTTTGACGGCTTCC 62.085 66.667 4.92 0.00 44.90 3.46
576 577 3.342627 CGCGTTTGACGGCTTCCA 61.343 61.111 0.00 0.00 42.82 3.53
577 578 2.887889 CGCGTTTGACGGCTTCCAA 61.888 57.895 0.00 0.00 42.82 3.53
586 587 4.764050 TGACGGCTTCCAATATCCTTTA 57.236 40.909 0.00 0.00 0.00 1.85
609 610 9.695526 TTTAGTATTTGAAGTACAGAGCGTTTA 57.304 29.630 0.73 0.00 0.00 2.01
612 613 9.216117 AGTATTTGAAGTACAGAGCGTTTATTT 57.784 29.630 0.73 0.00 0.00 1.40
615 616 8.776680 TTTGAAGTACAGAGCGTTTATTTTTC 57.223 30.769 0.00 0.00 0.00 2.29
616 617 6.586751 TGAAGTACAGAGCGTTTATTTTTCG 58.413 36.000 0.00 0.00 0.00 3.46
619 620 6.587651 AGTACAGAGCGTTTATTTTTCGTTC 58.412 36.000 0.00 0.00 35.67 3.95
620 621 5.668558 ACAGAGCGTTTATTTTTCGTTCT 57.331 34.783 0.00 0.00 43.42 3.01
623 624 6.631636 ACAGAGCGTTTATTTTTCGTTCTTTC 59.368 34.615 0.00 0.00 41.50 2.62
626 627 7.586664 AGAGCGTTTATTTTTCGTTCTTTCTTC 59.413 33.333 0.00 0.00 40.86 2.87
658 659 3.435671 GCGTTTCAAATATCCTATCCGGG 59.564 47.826 0.00 0.00 0.00 5.73
679 680 0.309612 CCGTTTGGGTTTCTGGAACG 59.690 55.000 0.00 0.00 41.77 3.95
680 681 1.018910 CGTTTGGGTTTCTGGAACGT 58.981 50.000 0.00 0.00 39.22 3.99
714 715 0.179000 CAAATCCAGGCCTAGCGAGT 59.821 55.000 3.98 0.00 0.00 4.18
718 719 0.614979 TCCAGGCCTAGCGAGTTTCT 60.615 55.000 3.98 0.00 0.00 2.52
733 734 5.221067 GCGAGTTTCTTTTCCTTTTTCCTCT 60.221 40.000 0.00 0.00 0.00 3.69
735 736 6.378710 AGTTTCTTTTCCTTTTTCCTCTCG 57.621 37.500 0.00 0.00 0.00 4.04
753 754 5.419760 TCTCGACACGGATAGTAATTCTG 57.580 43.478 0.00 0.00 0.00 3.02
787 788 2.222027 CAAGGAAAGTTGAGGCGACTT 58.778 47.619 0.00 0.00 44.43 3.01
788 789 2.171341 AGGAAAGTTGAGGCGACTTC 57.829 50.000 0.00 0.00 44.43 3.01
789 790 1.416401 AGGAAAGTTGAGGCGACTTCA 59.584 47.619 0.00 0.00 44.43 3.02
790 791 2.039084 AGGAAAGTTGAGGCGACTTCAT 59.961 45.455 0.00 0.00 44.43 2.57
791 792 2.416893 GGAAAGTTGAGGCGACTTCATC 59.583 50.000 0.00 0.00 44.43 2.92
827 828 3.140814 GCCCCCACTTCGGCAATC 61.141 66.667 0.00 0.00 45.01 2.67
828 829 2.677228 CCCCCACTTCGGCAATCT 59.323 61.111 0.00 0.00 0.00 2.40
829 830 1.452108 CCCCCACTTCGGCAATCTC 60.452 63.158 0.00 0.00 0.00 2.75
830 831 1.452108 CCCCACTTCGGCAATCTCC 60.452 63.158 0.00 0.00 0.00 3.71
837 838 2.579201 CGGCAATCTCCGGTCACT 59.421 61.111 0.00 0.00 45.38 3.41
872 875 1.067354 GGTACGATCAGTCCCACGTTT 60.067 52.381 0.00 0.00 39.59 3.60
890 893 4.519350 ACGTTTTTGATTCTCTTTCCCTCC 59.481 41.667 0.00 0.00 0.00 4.30
901 904 2.152016 CTTTCCCTCCGTTTTCCTCAC 58.848 52.381 0.00 0.00 0.00 3.51
976 984 2.099263 CGGCGATTCTTTCTCCTCTGTA 59.901 50.000 0.00 0.00 0.00 2.74
986 994 1.115467 CTCCTCTGTACCGGCAATCT 58.885 55.000 0.00 0.00 0.00 2.40
999 1010 2.066262 GGCAATCTTTCTCGTCGTCAA 58.934 47.619 0.00 0.00 0.00 3.18
1077 1091 7.389803 CACACATGTGTTTAATATCTTGGGA 57.610 36.000 28.64 0.00 42.83 4.37
1082 1096 9.693739 ACATGTGTTTAATATCTTGGGATACAA 57.306 29.630 0.00 0.00 37.27 2.41
1116 1130 2.279918 GGCCACGACGACAACAGT 60.280 61.111 0.00 0.00 0.00 3.55
1137 1151 0.401356 ACATACGGTCCGGGGTTTTT 59.599 50.000 17.28 0.00 0.00 1.94
1138 1152 0.806241 CATACGGTCCGGGGTTTTTG 59.194 55.000 17.28 0.00 0.00 2.44
1266 1284 2.181777 GCGTCCTGCGACATGAGA 59.818 61.111 0.00 0.00 44.77 3.27
1344 1362 6.205658 GGATTTTCAGGTCCAGTGATATTAGC 59.794 42.308 0.00 0.00 34.57 3.09
1395 1413 1.590259 GCGAAGTGAGATCGAGGGC 60.590 63.158 0.00 0.00 42.76 5.19
1401 1419 1.379977 TGAGATCGAGGGCTCCGTT 60.380 57.895 9.40 0.00 0.00 4.44
1620 1638 2.177394 TTGTTCTTGCTATGCGGTCA 57.823 45.000 0.00 0.00 0.00 4.02
1636 1654 2.034558 CGGTCACCTGTTTTGAAAGCAT 59.965 45.455 0.00 0.00 0.00 3.79
1717 1735 1.286880 CCTGCTGTTTTCAAGGCCG 59.713 57.895 0.00 0.00 0.00 6.13
1818 1836 6.599445 GGATAGATATGCAATGGATAGGCTT 58.401 40.000 0.32 0.00 0.00 4.35
1859 1878 1.946768 CCTTTGCGAGACCTGAACAAA 59.053 47.619 0.00 0.00 0.00 2.83
2004 2053 2.350863 AGAGGACCCATTGGAGAAGT 57.649 50.000 3.62 0.00 34.81 3.01
2048 2097 6.036953 GCATGAGCAGCTATATTGGTAGATTC 59.963 42.308 0.00 0.00 41.58 2.52
2170 2219 0.320697 GTCGCCCTAGTCAACCTGTT 59.679 55.000 0.00 0.00 0.00 3.16
2210 2279 0.814457 AGGAGTGCTTCTCTGCTACG 59.186 55.000 8.78 0.00 42.40 3.51
2363 2437 5.307544 TCTATACTAGTTCGCCTCCTCTT 57.692 43.478 0.00 0.00 0.00 2.85
2368 2442 4.139038 ACTAGTTCGCCTCCTCTTAGATC 58.861 47.826 0.00 0.00 0.00 2.75
2488 2567 8.993121 ACTTGTCATAATTGTAACACAAGAGAG 58.007 33.333 19.25 1.32 41.94 3.20
2492 2571 8.865001 GTCATAATTGTAACACAAGAGAGAGAC 58.135 37.037 0.00 0.00 41.94 3.36
2593 2672 5.128919 CAGTTTATAAGCATCTGCCTTCCT 58.871 41.667 1.97 0.00 43.38 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.498481 TGGAGGGACGTTTACTGTATGG 59.502 50.000 0.00 0.00 0.00 2.74
5 6 4.028131 TGATGGAGGGACGTTTACTGTAT 58.972 43.478 0.00 0.00 0.00 2.29
6 7 3.433343 TGATGGAGGGACGTTTACTGTA 58.567 45.455 0.00 0.00 0.00 2.74
9 10 3.517901 TCAATGATGGAGGGACGTTTACT 59.482 43.478 0.00 0.00 0.00 2.24
10 11 3.869065 TCAATGATGGAGGGACGTTTAC 58.131 45.455 0.00 0.00 0.00 2.01
11 12 4.258543 GTTCAATGATGGAGGGACGTTTA 58.741 43.478 0.00 0.00 0.00 2.01
12 13 3.081804 GTTCAATGATGGAGGGACGTTT 58.918 45.455 0.00 0.00 0.00 3.60
13 14 2.039746 TGTTCAATGATGGAGGGACGTT 59.960 45.455 0.00 0.00 0.00 3.99
14 15 1.628340 TGTTCAATGATGGAGGGACGT 59.372 47.619 0.00 0.00 0.00 4.34
15 16 2.283298 CTGTTCAATGATGGAGGGACG 58.717 52.381 0.00 0.00 0.00 4.79
16 17 2.239654 TCCTGTTCAATGATGGAGGGAC 59.760 50.000 3.74 0.00 0.00 4.46
17 18 2.507058 CTCCTGTTCAATGATGGAGGGA 59.493 50.000 15.12 5.61 40.25 4.20
18 19 2.928334 CTCCTGTTCAATGATGGAGGG 58.072 52.381 15.12 2.28 40.25 4.30
19 20 2.295885 GCTCCTGTTCAATGATGGAGG 58.704 52.381 20.61 11.08 43.15 4.30
20 21 1.938577 CGCTCCTGTTCAATGATGGAG 59.061 52.381 17.27 17.27 45.05 3.86
21 22 1.407299 CCGCTCCTGTTCAATGATGGA 60.407 52.381 0.00 0.00 0.00 3.41
22 23 1.019673 CCGCTCCTGTTCAATGATGG 58.980 55.000 0.00 0.00 0.00 3.51
23 24 1.667724 GTCCGCTCCTGTTCAATGATG 59.332 52.381 0.00 0.00 0.00 3.07
24 25 1.278985 TGTCCGCTCCTGTTCAATGAT 59.721 47.619 0.00 0.00 0.00 2.45
25 26 0.684535 TGTCCGCTCCTGTTCAATGA 59.315 50.000 0.00 0.00 0.00 2.57
26 27 0.798776 GTGTCCGCTCCTGTTCAATG 59.201 55.000 0.00 0.00 0.00 2.82
27 28 0.321653 GGTGTCCGCTCCTGTTCAAT 60.322 55.000 0.00 0.00 0.00 2.57
28 29 1.070786 GGTGTCCGCTCCTGTTCAA 59.929 57.895 0.00 0.00 0.00 2.69
29 30 2.741092 GGTGTCCGCTCCTGTTCA 59.259 61.111 0.00 0.00 0.00 3.18
30 31 2.432628 CGGTGTCCGCTCCTGTTC 60.433 66.667 0.00 0.00 41.17 3.18
31 32 4.003788 CCGGTGTCCGCTCCTGTT 62.004 66.667 2.41 0.00 46.86 3.16
74 75 3.434319 ATTGAAGCAGCGCACCGG 61.434 61.111 11.47 0.00 0.00 5.28
75 76 2.202388 CATTGAAGCAGCGCACCG 60.202 61.111 11.47 0.00 0.00 4.94
76 77 1.005294 CAACATTGAAGCAGCGCACC 61.005 55.000 11.47 0.00 0.00 5.01
77 78 1.005294 CCAACATTGAAGCAGCGCAC 61.005 55.000 11.47 0.00 0.00 5.34
78 79 1.286570 CCAACATTGAAGCAGCGCA 59.713 52.632 11.47 0.00 0.00 6.09
79 80 2.090524 GCCAACATTGAAGCAGCGC 61.091 57.895 0.00 0.00 0.00 5.92
80 81 1.005294 GTGCCAACATTGAAGCAGCG 61.005 55.000 0.00 0.00 35.56 5.18
81 82 0.668401 GGTGCCAACATTGAAGCAGC 60.668 55.000 8.57 8.57 45.16 5.25
82 83 0.675083 TGGTGCCAACATTGAAGCAG 59.325 50.000 0.00 0.00 35.56 4.24
83 84 0.675083 CTGGTGCCAACATTGAAGCA 59.325 50.000 0.00 0.00 0.00 3.91
84 85 0.675633 ACTGGTGCCAACATTGAAGC 59.324 50.000 0.00 0.00 0.00 3.86
85 86 1.955778 TCACTGGTGCCAACATTGAAG 59.044 47.619 0.00 0.00 0.00 3.02
86 87 2.064434 TCACTGGTGCCAACATTGAA 57.936 45.000 0.00 0.00 0.00 2.69
87 88 2.064434 TTCACTGGTGCCAACATTGA 57.936 45.000 0.00 0.00 0.00 2.57
88 89 2.546373 CCTTTCACTGGTGCCAACATTG 60.546 50.000 0.00 0.00 0.00 2.82
89 90 1.688197 CCTTTCACTGGTGCCAACATT 59.312 47.619 0.00 0.00 0.00 2.71
90 91 1.331214 CCTTTCACTGGTGCCAACAT 58.669 50.000 0.00 0.00 0.00 2.71
91 92 0.033601 ACCTTTCACTGGTGCCAACA 60.034 50.000 0.00 0.00 36.30 3.33
92 93 0.668535 GACCTTTCACTGGTGCCAAC 59.331 55.000 0.00 0.00 38.03 3.77
93 94 0.817634 CGACCTTTCACTGGTGCCAA 60.818 55.000 0.00 0.00 38.03 4.52
94 95 1.227823 CGACCTTTCACTGGTGCCA 60.228 57.895 0.00 0.00 38.03 4.92
95 96 2.617274 GCGACCTTTCACTGGTGCC 61.617 63.158 0.00 0.00 38.03 5.01
96 97 2.946762 GCGACCTTTCACTGGTGC 59.053 61.111 0.00 0.00 38.03 5.01
97 98 1.557443 GACGCGACCTTTCACTGGTG 61.557 60.000 15.93 0.00 38.03 4.17
98 99 1.300697 GACGCGACCTTTCACTGGT 60.301 57.895 15.93 0.00 41.07 4.00
99 100 1.006102 AGACGCGACCTTTCACTGG 60.006 57.895 15.93 0.00 0.00 4.00
100 101 1.891060 GCAGACGCGACCTTTCACTG 61.891 60.000 15.93 9.59 0.00 3.66
101 102 1.664965 GCAGACGCGACCTTTCACT 60.665 57.895 15.93 0.00 0.00 3.41
102 103 1.618640 GAGCAGACGCGACCTTTCAC 61.619 60.000 15.93 0.00 45.49 3.18
103 104 1.372997 GAGCAGACGCGACCTTTCA 60.373 57.895 15.93 0.00 45.49 2.69
104 105 1.080434 AGAGCAGACGCGACCTTTC 60.080 57.895 15.93 9.39 45.49 2.62
105 106 1.373497 CAGAGCAGACGCGACCTTT 60.373 57.895 15.93 0.00 45.49 3.11
106 107 2.259818 CAGAGCAGACGCGACCTT 59.740 61.111 15.93 0.00 45.49 3.50
107 108 3.753434 CCAGAGCAGACGCGACCT 61.753 66.667 15.93 6.53 45.49 3.85
108 109 4.803426 CCCAGAGCAGACGCGACC 62.803 72.222 15.93 3.72 45.49 4.79
119 120 3.088941 TAATGACGCCGGCCCAGAG 62.089 63.158 23.46 9.08 0.00 3.35
120 121 3.078196 TAATGACGCCGGCCCAGA 61.078 61.111 23.46 8.69 0.00 3.86
121 122 2.895372 GTAATGACGCCGGCCCAG 60.895 66.667 23.46 9.96 0.00 4.45
122 123 3.673956 CTGTAATGACGCCGGCCCA 62.674 63.158 23.46 19.79 0.00 5.36
123 124 2.895372 CTGTAATGACGCCGGCCC 60.895 66.667 23.46 14.05 0.00 5.80
124 125 1.883084 CTCTGTAATGACGCCGGCC 60.883 63.158 23.46 8.57 0.00 6.13
125 126 2.526120 GCTCTGTAATGACGCCGGC 61.526 63.158 19.07 19.07 0.00 6.13
126 127 1.148157 CTGCTCTGTAATGACGCCGG 61.148 60.000 0.00 0.00 0.00 6.13
127 128 1.756375 GCTGCTCTGTAATGACGCCG 61.756 60.000 0.00 0.00 0.00 6.46
128 129 1.432270 GGCTGCTCTGTAATGACGCC 61.432 60.000 0.00 0.00 0.00 5.68
129 130 1.756375 CGGCTGCTCTGTAATGACGC 61.756 60.000 0.00 0.00 0.00 5.19
130 131 1.756375 GCGGCTGCTCTGTAATGACG 61.756 60.000 11.21 0.00 38.39 4.35
131 132 2.009888 GCGGCTGCTCTGTAATGAC 58.990 57.895 11.21 0.00 38.39 3.06
132 133 4.521075 GCGGCTGCTCTGTAATGA 57.479 55.556 11.21 0.00 38.39 2.57
147 148 0.530650 ATTCATGCCGGTGTAGAGCG 60.531 55.000 1.90 4.23 42.85 5.03
148 149 0.940126 CATTCATGCCGGTGTAGAGC 59.060 55.000 1.90 0.00 0.00 4.09
160 161 2.411701 CAGCTGCCCGCATTCATG 59.588 61.111 0.00 0.00 42.61 3.07
161 162 2.831742 CCAGCTGCCCGCATTCAT 60.832 61.111 8.66 0.00 42.61 2.57
174 175 3.682292 ATTCCCTTCCGACGCCAGC 62.682 63.158 0.00 0.00 0.00 4.85
175 176 1.815421 CATTCCCTTCCGACGCCAG 60.815 63.158 0.00 0.00 0.00 4.85
176 177 2.267642 CATTCCCTTCCGACGCCA 59.732 61.111 0.00 0.00 0.00 5.69
177 178 3.202706 GCATTCCCTTCCGACGCC 61.203 66.667 0.00 0.00 0.00 5.68
178 179 1.819632 ATGCATTCCCTTCCGACGC 60.820 57.895 0.00 0.00 0.00 5.19
179 180 0.744414 ACATGCATTCCCTTCCGACG 60.744 55.000 0.00 0.00 0.00 5.12
180 181 0.734889 CACATGCATTCCCTTCCGAC 59.265 55.000 0.00 0.00 0.00 4.79
181 182 0.394216 CCACATGCATTCCCTTCCGA 60.394 55.000 0.00 0.00 0.00 4.55
182 183 1.386525 CCCACATGCATTCCCTTCCG 61.387 60.000 0.00 0.00 0.00 4.30
183 184 1.679559 GCCCACATGCATTCCCTTCC 61.680 60.000 0.00 0.00 0.00 3.46
184 185 1.818555 GCCCACATGCATTCCCTTC 59.181 57.895 0.00 0.00 0.00 3.46
185 186 2.053865 CGCCCACATGCATTCCCTT 61.054 57.895 0.00 0.00 0.00 3.95
186 187 2.440796 CGCCCACATGCATTCCCT 60.441 61.111 0.00 0.00 0.00 4.20
187 188 2.440065 TCGCCCACATGCATTCCC 60.440 61.111 0.00 0.00 0.00 3.97
188 189 2.484062 CCTCGCCCACATGCATTCC 61.484 63.158 0.00 0.00 0.00 3.01
189 190 1.031571 TTCCTCGCCCACATGCATTC 61.032 55.000 0.00 0.00 0.00 2.67
190 191 1.001020 TTCCTCGCCCACATGCATT 60.001 52.632 0.00 0.00 0.00 3.56
191 192 1.452651 CTTCCTCGCCCACATGCAT 60.453 57.895 0.00 0.00 0.00 3.96
192 193 2.046023 CTTCCTCGCCCACATGCA 60.046 61.111 0.00 0.00 0.00 3.96
193 194 2.825836 CCTTCCTCGCCCACATGC 60.826 66.667 0.00 0.00 0.00 4.06
194 195 1.153289 CTCCTTCCTCGCCCACATG 60.153 63.158 0.00 0.00 0.00 3.21
195 196 1.306141 TCTCCTTCCTCGCCCACAT 60.306 57.895 0.00 0.00 0.00 3.21
196 197 1.984570 CTCTCCTTCCTCGCCCACA 60.985 63.158 0.00 0.00 0.00 4.17
197 198 1.545706 AACTCTCCTTCCTCGCCCAC 61.546 60.000 0.00 0.00 0.00 4.61
198 199 0.836400 AAACTCTCCTTCCTCGCCCA 60.836 55.000 0.00 0.00 0.00 5.36
199 200 0.325272 AAAACTCTCCTTCCTCGCCC 59.675 55.000 0.00 0.00 0.00 6.13
200 201 1.002087 TCAAAACTCTCCTTCCTCGCC 59.998 52.381 0.00 0.00 0.00 5.54
201 202 2.289133 ACTCAAAACTCTCCTTCCTCGC 60.289 50.000 0.00 0.00 0.00 5.03
202 203 3.321497 CACTCAAAACTCTCCTTCCTCG 58.679 50.000 0.00 0.00 0.00 4.63
203 204 3.558109 CCCACTCAAAACTCTCCTTCCTC 60.558 52.174 0.00 0.00 0.00 3.71
204 205 2.373502 CCCACTCAAAACTCTCCTTCCT 59.626 50.000 0.00 0.00 0.00 3.36
205 206 2.784347 CCCACTCAAAACTCTCCTTCC 58.216 52.381 0.00 0.00 0.00 3.46
206 207 2.155279 GCCCACTCAAAACTCTCCTTC 58.845 52.381 0.00 0.00 0.00 3.46
207 208 1.202940 GGCCCACTCAAAACTCTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
208 209 0.402121 GGCCCACTCAAAACTCTCCT 59.598 55.000 0.00 0.00 0.00 3.69
209 210 0.110486 TGGCCCACTCAAAACTCTCC 59.890 55.000 0.00 0.00 0.00 3.71
210 211 1.528129 CTGGCCCACTCAAAACTCTC 58.472 55.000 0.00 0.00 0.00 3.20
211 212 0.111253 CCTGGCCCACTCAAAACTCT 59.889 55.000 0.00 0.00 0.00 3.24
212 213 0.895559 CCCTGGCCCACTCAAAACTC 60.896 60.000 0.00 0.00 0.00 3.01
213 214 1.153756 CCCTGGCCCACTCAAAACT 59.846 57.895 0.00 0.00 0.00 2.66
214 215 0.111639 TACCCTGGCCCACTCAAAAC 59.888 55.000 0.00 0.00 0.00 2.43
215 216 0.404040 CTACCCTGGCCCACTCAAAA 59.596 55.000 0.00 0.00 0.00 2.44
216 217 0.770557 ACTACCCTGGCCCACTCAAA 60.771 55.000 0.00 0.00 0.00 2.69
217 218 1.151899 ACTACCCTGGCCCACTCAA 60.152 57.895 0.00 0.00 0.00 3.02
218 219 1.612442 GACTACCCTGGCCCACTCA 60.612 63.158 0.00 0.00 0.00 3.41
219 220 1.612442 TGACTACCCTGGCCCACTC 60.612 63.158 0.00 0.00 0.00 3.51
220 221 1.613630 CTGACTACCCTGGCCCACT 60.614 63.158 0.00 0.00 0.00 4.00
221 222 2.670148 CCTGACTACCCTGGCCCAC 61.670 68.421 0.00 0.00 0.00 4.61
222 223 2.285368 CCTGACTACCCTGGCCCA 60.285 66.667 0.00 0.00 0.00 5.36
223 224 2.040606 TCCTGACTACCCTGGCCC 59.959 66.667 0.00 0.00 0.00 5.80
224 225 2.736826 GCTCCTGACTACCCTGGCC 61.737 68.421 0.00 0.00 0.00 5.36
225 226 2.904131 GCTCCTGACTACCCTGGC 59.096 66.667 0.00 0.00 0.00 4.85
226 227 2.427245 CCGCTCCTGACTACCCTGG 61.427 68.421 0.00 0.00 0.00 4.45
227 228 1.379977 TCCGCTCCTGACTACCCTG 60.380 63.158 0.00 0.00 0.00 4.45
228 229 1.380112 GTCCGCTCCTGACTACCCT 60.380 63.158 0.00 0.00 0.00 4.34
229 230 2.772691 CGTCCGCTCCTGACTACCC 61.773 68.421 0.00 0.00 0.00 3.69
230 231 2.045131 ACGTCCGCTCCTGACTACC 61.045 63.158 0.00 0.00 0.00 3.18
231 232 1.136984 CACGTCCGCTCCTGACTAC 59.863 63.158 0.00 0.00 0.00 2.73
232 233 2.044555 CCACGTCCGCTCCTGACTA 61.045 63.158 0.00 0.00 0.00 2.59
233 234 3.374402 CCACGTCCGCTCCTGACT 61.374 66.667 0.00 0.00 0.00 3.41
256 257 4.084888 CTTTGCGGGCGTTCGGAC 62.085 66.667 2.20 0.00 0.00 4.79
268 269 0.321298 TCAACTAGGGGACGCTTTGC 60.321 55.000 0.00 0.00 0.00 3.68
269 270 2.178912 TTCAACTAGGGGACGCTTTG 57.821 50.000 0.00 0.00 0.00 2.77
270 271 2.304761 TCATTCAACTAGGGGACGCTTT 59.695 45.455 0.00 0.00 0.00 3.51
271 272 1.906574 TCATTCAACTAGGGGACGCTT 59.093 47.619 0.00 0.00 0.00 4.68
272 273 1.207329 GTCATTCAACTAGGGGACGCT 59.793 52.381 0.00 0.00 0.00 5.07
273 274 1.066430 TGTCATTCAACTAGGGGACGC 60.066 52.381 0.00 0.00 0.00 5.19
274 275 2.496070 TCTGTCATTCAACTAGGGGACG 59.504 50.000 0.00 0.00 0.00 4.79
275 276 4.254492 GTTCTGTCATTCAACTAGGGGAC 58.746 47.826 0.00 0.00 0.00 4.46
276 277 3.907474 TGTTCTGTCATTCAACTAGGGGA 59.093 43.478 0.00 0.00 0.00 4.81
277 278 4.003648 GTGTTCTGTCATTCAACTAGGGG 58.996 47.826 0.00 0.00 0.00 4.79
278 279 3.679980 CGTGTTCTGTCATTCAACTAGGG 59.320 47.826 0.00 0.00 0.00 3.53
279 280 4.307432 ACGTGTTCTGTCATTCAACTAGG 58.693 43.478 0.00 0.00 0.00 3.02
280 281 4.386049 GGACGTGTTCTGTCATTCAACTAG 59.614 45.833 0.00 0.00 38.10 2.57
281 282 4.304110 GGACGTGTTCTGTCATTCAACTA 58.696 43.478 0.00 0.00 38.10 2.24
282 283 3.131396 GGACGTGTTCTGTCATTCAACT 58.869 45.455 0.00 0.00 38.10 3.16
283 284 2.096909 CGGACGTGTTCTGTCATTCAAC 60.097 50.000 0.00 0.00 38.10 3.18
284 285 2.131972 CGGACGTGTTCTGTCATTCAA 58.868 47.619 0.00 0.00 38.10 2.69
285 286 1.604438 CCGGACGTGTTCTGTCATTCA 60.604 52.381 0.00 0.00 38.10 2.57
286 287 1.068474 CCGGACGTGTTCTGTCATTC 58.932 55.000 0.00 0.00 38.10 2.67
287 288 0.677288 TCCGGACGTGTTCTGTCATT 59.323 50.000 0.00 0.00 38.10 2.57
288 289 0.038526 GTCCGGACGTGTTCTGTCAT 60.039 55.000 20.85 0.00 38.10 3.06
289 290 1.361271 GTCCGGACGTGTTCTGTCA 59.639 57.895 20.85 0.00 38.10 3.58
290 291 1.372623 GGTCCGGACGTGTTCTGTC 60.373 63.158 27.68 7.22 35.60 3.51
291 292 2.732658 GGTCCGGACGTGTTCTGT 59.267 61.111 27.68 0.00 0.00 3.41
292 293 1.855213 TACGGTCCGGACGTGTTCTG 61.855 60.000 28.94 14.23 45.20 3.02
293 294 0.962356 ATACGGTCCGGACGTGTTCT 60.962 55.000 28.94 17.52 45.20 3.01
294 295 0.799534 CATACGGTCCGGACGTGTTC 60.800 60.000 28.94 15.36 45.20 3.18
295 296 1.213537 CATACGGTCCGGACGTGTT 59.786 57.895 28.94 18.33 45.20 3.32
296 297 2.703798 CCATACGGTCCGGACGTGT 61.704 63.158 29.79 28.69 45.20 4.49
297 298 2.103538 CCATACGGTCCGGACGTG 59.896 66.667 29.79 25.53 45.20 4.49
298 299 2.361610 ACCATACGGTCCGGACGT 60.362 61.111 27.68 27.24 44.71 4.34
307 308 0.937304 CAAGCATTCGGACCATACGG 59.063 55.000 0.00 0.00 38.77 4.02
308 309 1.327460 CACAAGCATTCGGACCATACG 59.673 52.381 0.00 0.00 0.00 3.06
309 310 2.351726 GTCACAAGCATTCGGACCATAC 59.648 50.000 0.00 0.00 0.00 2.39
310 311 2.627945 GTCACAAGCATTCGGACCATA 58.372 47.619 0.00 0.00 0.00 2.74
311 312 1.453155 GTCACAAGCATTCGGACCAT 58.547 50.000 0.00 0.00 0.00 3.55
312 313 0.948623 CGTCACAAGCATTCGGACCA 60.949 55.000 0.00 0.00 0.00 4.02
313 314 1.635663 CCGTCACAAGCATTCGGACC 61.636 60.000 0.00 0.00 43.22 4.46
314 315 0.949105 ACCGTCACAAGCATTCGGAC 60.949 55.000 8.84 0.00 43.22 4.79
315 316 0.250124 AACCGTCACAAGCATTCGGA 60.250 50.000 8.84 0.00 43.22 4.55
316 317 0.591170 AAACCGTCACAAGCATTCGG 59.409 50.000 0.00 0.00 45.53 4.30
317 318 1.262950 TCAAACCGTCACAAGCATTCG 59.737 47.619 0.00 0.00 0.00 3.34
318 319 2.548057 TCTCAAACCGTCACAAGCATTC 59.452 45.455 0.00 0.00 0.00 2.67
319 320 2.549754 CTCTCAAACCGTCACAAGCATT 59.450 45.455 0.00 0.00 0.00 3.56
320 321 2.146342 CTCTCAAACCGTCACAAGCAT 58.854 47.619 0.00 0.00 0.00 3.79
321 322 1.134521 ACTCTCAAACCGTCACAAGCA 60.135 47.619 0.00 0.00 0.00 3.91
322 323 1.527311 GACTCTCAAACCGTCACAAGC 59.473 52.381 0.00 0.00 0.00 4.01
323 324 2.135933 GGACTCTCAAACCGTCACAAG 58.864 52.381 0.00 0.00 0.00 3.16
324 325 1.483004 TGGACTCTCAAACCGTCACAA 59.517 47.619 0.00 0.00 0.00 3.33
325 326 1.116308 TGGACTCTCAAACCGTCACA 58.884 50.000 0.00 0.00 0.00 3.58
326 327 2.135933 CTTGGACTCTCAAACCGTCAC 58.864 52.381 0.00 0.00 0.00 3.67
327 328 1.760613 ACTTGGACTCTCAAACCGTCA 59.239 47.619 0.00 0.00 0.00 4.35
328 329 2.528041 ACTTGGACTCTCAAACCGTC 57.472 50.000 0.00 0.00 0.00 4.79
329 330 3.640029 TCTAACTTGGACTCTCAAACCGT 59.360 43.478 0.00 0.00 0.00 4.83
330 331 4.022242 TCTCTAACTTGGACTCTCAAACCG 60.022 45.833 0.00 0.00 0.00 4.44
331 332 5.470047 TCTCTAACTTGGACTCTCAAACC 57.530 43.478 0.00 0.00 0.00 3.27
332 333 5.350091 GCATCTCTAACTTGGACTCTCAAAC 59.650 44.000 0.00 0.00 0.00 2.93
333 334 5.482908 GCATCTCTAACTTGGACTCTCAAA 58.517 41.667 0.00 0.00 0.00 2.69
334 335 4.081420 GGCATCTCTAACTTGGACTCTCAA 60.081 45.833 0.00 0.00 0.00 3.02
335 336 3.449018 GGCATCTCTAACTTGGACTCTCA 59.551 47.826 0.00 0.00 0.00 3.27
336 337 3.181470 GGGCATCTCTAACTTGGACTCTC 60.181 52.174 0.00 0.00 0.00 3.20
337 338 2.769095 GGGCATCTCTAACTTGGACTCT 59.231 50.000 0.00 0.00 0.00 3.24
338 339 2.769095 AGGGCATCTCTAACTTGGACTC 59.231 50.000 0.00 0.00 0.00 3.36
339 340 2.503356 CAGGGCATCTCTAACTTGGACT 59.497 50.000 0.00 0.00 0.00 3.85
340 341 2.501723 TCAGGGCATCTCTAACTTGGAC 59.498 50.000 0.00 0.00 0.00 4.02
341 342 2.832838 TCAGGGCATCTCTAACTTGGA 58.167 47.619 0.00 0.00 0.00 3.53
342 343 3.853355 ATCAGGGCATCTCTAACTTGG 57.147 47.619 0.00 0.00 0.00 3.61
343 344 5.923204 ACTTATCAGGGCATCTCTAACTTG 58.077 41.667 0.00 0.00 0.00 3.16
344 345 5.902431 AGACTTATCAGGGCATCTCTAACTT 59.098 40.000 0.00 0.00 0.00 2.66
345 346 5.463154 AGACTTATCAGGGCATCTCTAACT 58.537 41.667 0.00 0.00 0.00 2.24
346 347 5.799827 AGACTTATCAGGGCATCTCTAAC 57.200 43.478 0.00 0.00 0.00 2.34
347 348 6.183361 GGAAAGACTTATCAGGGCATCTCTAA 60.183 42.308 0.00 0.00 0.00 2.10
348 349 5.305644 GGAAAGACTTATCAGGGCATCTCTA 59.694 44.000 0.00 0.00 0.00 2.43
349 350 4.102367 GGAAAGACTTATCAGGGCATCTCT 59.898 45.833 0.00 0.00 0.00 3.10
350 351 4.141620 TGGAAAGACTTATCAGGGCATCTC 60.142 45.833 0.00 0.00 0.00 2.75
351 352 3.782523 TGGAAAGACTTATCAGGGCATCT 59.217 43.478 0.00 0.00 0.00 2.90
352 353 4.156455 TGGAAAGACTTATCAGGGCATC 57.844 45.455 0.00 0.00 0.00 3.91
353 354 4.591321 TTGGAAAGACTTATCAGGGCAT 57.409 40.909 0.00 0.00 0.00 4.40
354 355 4.380843 TTTGGAAAGACTTATCAGGGCA 57.619 40.909 0.00 0.00 0.00 5.36
355 356 5.921962 ATTTTGGAAAGACTTATCAGGGC 57.078 39.130 0.00 0.00 0.00 5.19
362 363 9.857957 AACGTGTTTTTATTTTGGAAAGACTTA 57.142 25.926 0.00 0.00 0.00 2.24
363 364 8.766000 AACGTGTTTTTATTTTGGAAAGACTT 57.234 26.923 0.00 0.00 0.00 3.01
364 365 8.652463 CAAACGTGTTTTTATTTTGGAAAGACT 58.348 29.630 0.00 0.00 0.00 3.24
365 366 8.436970 ACAAACGTGTTTTTATTTTGGAAAGAC 58.563 29.630 0.00 0.00 32.58 3.01
366 367 8.436200 CACAAACGTGTTTTTATTTTGGAAAGA 58.564 29.630 0.00 0.00 35.07 2.52
367 368 8.224437 ACACAAACGTGTTTTTATTTTGGAAAG 58.776 29.630 0.00 0.00 45.40 2.62
368 369 8.084590 ACACAAACGTGTTTTTATTTTGGAAA 57.915 26.923 0.00 0.00 45.40 3.13
369 370 7.653767 ACACAAACGTGTTTTTATTTTGGAA 57.346 28.000 0.00 0.00 45.40 3.53
383 384 4.349663 TTTCCAAGAGAACACAAACGTG 57.650 40.909 0.00 0.00 40.42 4.49
384 385 5.124776 TCATTTTCCAAGAGAACACAAACGT 59.875 36.000 0.00 0.00 32.95 3.99
385 386 5.577835 TCATTTTCCAAGAGAACACAAACG 58.422 37.500 0.00 0.00 32.95 3.60
386 387 7.428826 AGATCATTTTCCAAGAGAACACAAAC 58.571 34.615 0.00 0.00 32.95 2.93
387 388 7.503566 AGAGATCATTTTCCAAGAGAACACAAA 59.496 33.333 0.00 0.00 32.95 2.83
388 389 7.000472 AGAGATCATTTTCCAAGAGAACACAA 59.000 34.615 0.00 0.00 32.95 3.33
389 390 6.429078 CAGAGATCATTTTCCAAGAGAACACA 59.571 38.462 0.00 0.00 32.95 3.72
390 391 6.128063 CCAGAGATCATTTTCCAAGAGAACAC 60.128 42.308 0.00 0.00 32.95 3.32
391 392 5.942236 CCAGAGATCATTTTCCAAGAGAACA 59.058 40.000 0.00 0.00 32.95 3.18
392 393 5.942826 ACCAGAGATCATTTTCCAAGAGAAC 59.057 40.000 0.00 0.00 32.95 3.01
393 394 5.942236 CACCAGAGATCATTTTCCAAGAGAA 59.058 40.000 0.00 0.00 0.00 2.87
394 395 5.249163 TCACCAGAGATCATTTTCCAAGAGA 59.751 40.000 0.00 0.00 0.00 3.10
395 396 5.494724 TCACCAGAGATCATTTTCCAAGAG 58.505 41.667 0.00 0.00 0.00 2.85
396 397 5.503634 TCACCAGAGATCATTTTCCAAGA 57.496 39.130 0.00 0.00 0.00 3.02
397 398 6.561614 CAATCACCAGAGATCATTTTCCAAG 58.438 40.000 0.00 0.00 0.00 3.61
398 399 5.105635 GCAATCACCAGAGATCATTTTCCAA 60.106 40.000 0.00 0.00 0.00 3.53
399 400 4.400251 GCAATCACCAGAGATCATTTTCCA 59.600 41.667 0.00 0.00 0.00 3.53
400 401 4.202090 GGCAATCACCAGAGATCATTTTCC 60.202 45.833 0.00 0.00 0.00 3.13
401 402 4.202090 GGGCAATCACCAGAGATCATTTTC 60.202 45.833 0.00 0.00 0.00 2.29
402 403 3.703052 GGGCAATCACCAGAGATCATTTT 59.297 43.478 0.00 0.00 0.00 1.82
403 404 3.053095 AGGGCAATCACCAGAGATCATTT 60.053 43.478 0.00 0.00 0.00 2.32
404 405 2.512896 AGGGCAATCACCAGAGATCATT 59.487 45.455 0.00 0.00 0.00 2.57
405 406 2.133520 AGGGCAATCACCAGAGATCAT 58.866 47.619 0.00 0.00 0.00 2.45
406 407 1.211212 CAGGGCAATCACCAGAGATCA 59.789 52.381 0.00 0.00 0.00 2.92
407 408 1.476471 CCAGGGCAATCACCAGAGATC 60.476 57.143 0.00 0.00 0.00 2.75
408 409 0.549950 CCAGGGCAATCACCAGAGAT 59.450 55.000 0.00 0.00 0.00 2.75
409 410 0.547471 TCCAGGGCAATCACCAGAGA 60.547 55.000 0.00 0.00 0.00 3.10
410 411 0.549950 ATCCAGGGCAATCACCAGAG 59.450 55.000 0.00 0.00 0.00 3.35
411 412 0.548031 GATCCAGGGCAATCACCAGA 59.452 55.000 0.00 0.00 0.00 3.86
412 413 0.816825 CGATCCAGGGCAATCACCAG 60.817 60.000 0.00 0.00 0.00 4.00
413 414 1.224315 CGATCCAGGGCAATCACCA 59.776 57.895 0.00 0.00 0.00 4.17
414 415 1.097547 CACGATCCAGGGCAATCACC 61.098 60.000 0.00 0.00 0.00 4.02
415 416 0.392998 ACACGATCCAGGGCAATCAC 60.393 55.000 0.00 0.00 0.00 3.06
416 417 0.327924 AACACGATCCAGGGCAATCA 59.672 50.000 0.00 0.00 0.00 2.57
417 418 1.940613 GTAACACGATCCAGGGCAATC 59.059 52.381 0.00 0.00 0.00 2.67
418 419 1.742411 CGTAACACGATCCAGGGCAAT 60.742 52.381 0.00 0.00 46.05 3.56
419 420 0.390603 CGTAACACGATCCAGGGCAA 60.391 55.000 0.00 0.00 46.05 4.52
420 421 1.216977 CGTAACACGATCCAGGGCA 59.783 57.895 0.00 0.00 46.05 5.36
421 422 2.171725 GCGTAACACGATCCAGGGC 61.172 63.158 2.35 0.00 46.05 5.19
422 423 0.806102 CTGCGTAACACGATCCAGGG 60.806 60.000 2.35 0.00 46.05 4.45
423 424 0.806102 CCTGCGTAACACGATCCAGG 60.806 60.000 2.35 6.22 46.05 4.45
424 425 0.172578 TCCTGCGTAACACGATCCAG 59.827 55.000 2.35 0.86 46.05 3.86
425 426 0.172578 CTCCTGCGTAACACGATCCA 59.827 55.000 2.35 0.00 46.05 3.41
426 427 0.172803 ACTCCTGCGTAACACGATCC 59.827 55.000 2.35 0.00 46.05 3.36
427 428 1.546834 GACTCCTGCGTAACACGATC 58.453 55.000 2.35 0.00 46.05 3.69
428 429 0.179171 CGACTCCTGCGTAACACGAT 60.179 55.000 2.35 0.00 46.05 3.73
429 430 1.208358 CGACTCCTGCGTAACACGA 59.792 57.895 2.35 0.00 46.05 4.35
451 452 1.343789 AGGCAGGAGATGATGATGTCG 59.656 52.381 0.00 0.00 0.00 4.35
519 520 2.040544 CAACCATCCTGCACCGACC 61.041 63.158 0.00 0.00 0.00 4.79
559 560 2.182614 ATTGGAAGCCGTCAAACGCG 62.183 55.000 3.53 3.53 40.91 6.01
560 561 0.800012 TATTGGAAGCCGTCAAACGC 59.200 50.000 0.00 0.00 40.91 4.84
561 562 2.031683 GGATATTGGAAGCCGTCAAACG 59.968 50.000 0.00 0.00 42.11 3.60
562 563 3.279434 AGGATATTGGAAGCCGTCAAAC 58.721 45.455 0.00 0.00 0.00 2.93
563 564 3.644966 AGGATATTGGAAGCCGTCAAA 57.355 42.857 0.00 0.00 0.00 2.69
564 565 3.644966 AAGGATATTGGAAGCCGTCAA 57.355 42.857 0.00 0.00 0.00 3.18
565 566 3.644966 AAAGGATATTGGAAGCCGTCA 57.355 42.857 0.00 0.00 0.00 4.35
566 567 4.704965 ACTAAAGGATATTGGAAGCCGTC 58.295 43.478 0.00 0.00 0.00 4.79
567 568 4.772886 ACTAAAGGATATTGGAAGCCGT 57.227 40.909 0.00 0.00 0.00 5.68
568 569 7.444183 TCAAATACTAAAGGATATTGGAAGCCG 59.556 37.037 0.00 0.00 0.00 5.52
569 570 8.691661 TCAAATACTAAAGGATATTGGAAGCC 57.308 34.615 0.00 0.00 0.00 4.35
586 587 8.773404 AATAAACGCTCTGTACTTCAAATACT 57.227 30.769 0.00 0.00 0.00 2.12
599 600 6.851330 AGAAAGAACGAAAAATAAACGCTCTG 59.149 34.615 0.00 0.00 33.80 3.35
609 610 4.976116 CGGCAAGAAGAAAGAACGAAAAAT 59.024 37.500 0.00 0.00 0.00 1.82
612 613 2.289547 CCGGCAAGAAGAAAGAACGAAA 59.710 45.455 0.00 0.00 0.00 3.46
615 616 0.517316 CCCGGCAAGAAGAAAGAACG 59.483 55.000 0.00 0.00 0.00 3.95
616 617 1.807142 CTCCCGGCAAGAAGAAAGAAC 59.193 52.381 0.00 0.00 0.00 3.01
619 620 1.639298 CGCTCCCGGCAAGAAGAAAG 61.639 60.000 0.00 0.00 41.91 2.62
620 621 1.671054 CGCTCCCGGCAAGAAGAAA 60.671 57.895 0.00 0.00 41.91 2.52
623 624 1.912371 GAAACGCTCCCGGCAAGAAG 61.912 60.000 0.00 0.00 41.91 2.85
626 627 1.791103 TTTGAAACGCTCCCGGCAAG 61.791 55.000 0.00 0.00 41.91 4.01
672 673 1.419374 GACTAGTGCACACGTTCCAG 58.581 55.000 21.04 6.45 36.20 3.86
679 680 2.342279 TGGGCGACTAGTGCACAC 59.658 61.111 21.04 6.46 41.71 3.82
680 681 0.036164 ATTTGGGCGACTAGTGCACA 59.964 50.000 21.04 15.44 45.67 4.57
714 715 5.883673 TGTCGAGAGGAAAAAGGAAAAGAAA 59.116 36.000 0.00 0.00 0.00 2.52
718 719 3.558418 CGTGTCGAGAGGAAAAAGGAAAA 59.442 43.478 0.00 0.00 0.00 2.29
733 734 4.637091 TGTCAGAATTACTATCCGTGTCGA 59.363 41.667 0.00 0.00 0.00 4.20
735 736 7.544566 TCTTTTGTCAGAATTACTATCCGTGTC 59.455 37.037 0.00 0.00 0.00 3.67
753 754 7.386573 TCAACTTTCCTTGGTTTTTCTTTTGTC 59.613 33.333 0.00 0.00 0.00 3.18
767 768 1.884235 AGTCGCCTCAACTTTCCTTG 58.116 50.000 0.00 0.00 0.00 3.61
787 788 2.234143 CAGTGCCGAGGATCTAGATGA 58.766 52.381 10.74 0.00 0.00 2.92
788 789 1.336702 GCAGTGCCGAGGATCTAGATG 60.337 57.143 10.74 0.00 0.00 2.90
789 790 0.965439 GCAGTGCCGAGGATCTAGAT 59.035 55.000 4.47 4.47 0.00 1.98
790 791 1.109920 GGCAGTGCCGAGGATCTAGA 61.110 60.000 20.55 0.00 39.62 2.43
791 792 1.365633 GGCAGTGCCGAGGATCTAG 59.634 63.158 20.55 0.00 39.62 2.43
811 812 1.452108 GAGATTGCCGAAGTGGGGG 60.452 63.158 0.00 0.00 38.63 5.40
812 813 1.452108 GGAGATTGCCGAAGTGGGG 60.452 63.158 0.00 0.00 38.63 4.96
813 814 4.225497 GGAGATTGCCGAAGTGGG 57.775 61.111 0.00 0.00 38.63 4.61
821 822 1.603172 CGATAGTGACCGGAGATTGCC 60.603 57.143 9.46 0.00 0.00 4.52
822 823 1.772182 CGATAGTGACCGGAGATTGC 58.228 55.000 9.46 0.00 0.00 3.56
829 830 2.728817 GCCTCCGATAGTGACCGG 59.271 66.667 0.00 0.00 46.57 5.28
830 831 1.828660 AGGCCTCCGATAGTGACCG 60.829 63.158 0.00 0.00 0.00 4.79
831 832 0.755698 TCAGGCCTCCGATAGTGACC 60.756 60.000 0.00 0.00 0.00 4.02
837 838 1.700955 GTACCTTCAGGCCTCCGATA 58.299 55.000 0.00 0.00 39.32 2.92
872 875 4.367039 AACGGAGGGAAAGAGAATCAAA 57.633 40.909 0.00 0.00 37.82 2.69
901 904 3.066064 TGATGGGAAAACGCATTAATCCG 59.934 43.478 0.00 0.00 0.00 4.18
976 984 0.736325 CGACGAGAAAGATTGCCGGT 60.736 55.000 1.90 0.00 0.00 5.28
986 994 4.364860 TGTCTTCATTTGACGACGAGAAA 58.635 39.130 0.00 0.00 43.65 2.52
999 1010 4.894784 ACACCGTCTTACATGTCTTCATT 58.105 39.130 0.00 0.00 31.15 2.57
1066 1080 8.439971 TCTATGCTTGTTGTATCCCAAGATATT 58.560 33.333 3.72 0.00 40.36 1.28
1077 1091 5.746065 GCCCATACCTCTATGCTTGTTGTAT 60.746 44.000 0.00 0.00 0.00 2.29
1082 1096 1.421646 GGCCCATACCTCTATGCTTGT 59.578 52.381 0.00 0.00 0.00 3.16
1116 1130 1.274712 AAACCCCGGACCGTATGTAA 58.725 50.000 13.94 0.00 0.00 2.41
1344 1362 1.517242 GAGTCAGTGGAGCAAACCTG 58.483 55.000 0.00 0.00 0.00 4.00
1395 1413 4.558898 CGATCATCCCTAAGGTAAACGGAG 60.559 50.000 0.00 0.00 0.00 4.63
1401 1419 2.632996 CAGGCGATCATCCCTAAGGTAA 59.367 50.000 0.00 0.00 0.00 2.85
1620 1638 4.401925 AGAGCTATGCTTTCAAAACAGGT 58.598 39.130 0.00 0.00 39.88 4.00
1636 1654 2.369860 CCTGCATTGACCCATAGAGCTA 59.630 50.000 0.00 0.00 0.00 3.32
1665 1683 1.037030 CGGTTATGCATTGCCCTGGT 61.037 55.000 3.54 0.00 0.00 4.00
1717 1735 6.520272 AGTCAGTATAGATGAAATGGAGCAC 58.480 40.000 0.00 0.00 0.00 4.40
2004 2053 6.502652 TCATGCTTCACGAAAATTTTCTTCA 58.497 32.000 24.53 12.42 35.07 3.02
2048 2097 7.967854 TGACAAATTGGTATGAGAAATTTAGCG 59.032 33.333 0.00 0.00 33.02 4.26
2323 2395 3.147553 AGAAAGTGAAAGGAAGAGGGC 57.852 47.619 0.00 0.00 0.00 5.19
2363 2437 3.982516 AGAGGGCACTTACACAGATCTA 58.017 45.455 0.00 0.00 0.00 1.98
2368 2442 1.160137 GCAAGAGGGCACTTACACAG 58.840 55.000 0.00 0.00 0.00 3.66
2488 2567 0.529378 CTGCCAATTTGCCAGGTCTC 59.471 55.000 0.00 0.00 0.00 3.36
2492 2571 2.662070 CCCCTGCCAATTTGCCAGG 61.662 63.158 17.47 17.47 32.62 4.45
2593 2672 2.290387 TGGCACACGCTTTTTATCCCTA 60.290 45.455 0.00 0.00 38.60 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.