Multiple sequence alignment - TraesCS5B01G471700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G471700 chr5B 100.000 2931 0 0 1 2931 644888681 644891611 0.000000e+00 5413.0
1 TraesCS5B01G471700 chr5B 79.572 421 35 15 7 387 644865792 644865383 1.350000e-63 254.0
2 TraesCS5B01G471700 chr5B 96.774 93 2 1 2839 2931 553182041 553182132 1.410000e-33 154.0
3 TraesCS5B01G471700 chr5B 95.699 93 4 0 2839 2931 427284727 427284635 1.820000e-32 150.0
4 TraesCS5B01G471700 chr5B 94.792 96 5 0 2836 2931 597327368 597327463 1.820000e-32 150.0
5 TraesCS5B01G471700 chr5B 83.688 141 5 8 761 901 644864429 644864307 1.850000e-22 117.0
6 TraesCS5B01G471700 chr5B 84.615 91 8 4 665 755 644864589 644864505 5.200000e-13 86.1
7 TraesCS5B01G471700 chr5A 92.765 1313 56 13 761 2071 641732856 641734131 0.000000e+00 1862.0
8 TraesCS5B01G471700 chr5A 89.760 459 27 7 2140 2593 641734741 641735184 1.180000e-158 569.0
9 TraesCS5B01G471700 chr5A 85.844 551 42 11 1 516 641731908 641732457 1.190000e-153 553.0
10 TraesCS5B01G471700 chr5A 81.910 398 44 15 1 388 641684376 641683997 7.890000e-81 311.0
11 TraesCS5B01G471700 chr5A 85.938 128 12 5 263 386 641684849 641684724 6.590000e-27 132.0
12 TraesCS5B01G471700 chr5D 89.626 1311 67 41 830 2109 513977985 513979257 0.000000e+00 1604.0
13 TraesCS5B01G471700 chr5D 89.808 834 50 18 1 821 513976296 513977107 0.000000e+00 1037.0
14 TraesCS5B01G471700 chr5D 82.463 268 28 8 131 388 513908166 513907908 1.770000e-52 217.0
15 TraesCS5B01G471700 chr5D 84.868 152 4 9 757 907 513907013 513906880 5.100000e-28 135.0
16 TraesCS5B01G471700 chr5D 93.333 75 1 1 761 835 513977192 513977262 1.110000e-19 108.0
17 TraesCS5B01G471700 chr5D 90.411 73 7 0 608 680 513907263 513907191 2.400000e-16 97.1
18 TraesCS5B01G471700 chr5D 96.154 52 2 0 2057 2108 513979270 513979321 5.200000e-13 86.1
19 TraesCS5B01G471700 chr5D 95.745 47 2 0 94 140 513977143 513977189 3.130000e-10 76.8
20 TraesCS5B01G471700 chr2B 92.574 404 30 0 1386 1789 488009407 488009810 5.450000e-162 580.0
21 TraesCS5B01G471700 chr2B 86.861 274 19 8 1074 1345 488009081 488009339 1.030000e-74 291.0
22 TraesCS5B01G471700 chr2A 92.289 402 31 0 1386 1787 581577659 581578060 3.280000e-159 571.0
23 TraesCS5B01G471700 chr2A 81.295 417 40 16 941 1344 581577184 581577575 1.320000e-78 303.0
24 TraesCS5B01G471700 chr2D 91.832 404 33 0 1386 1789 414401985 414402388 5.480000e-157 564.0
25 TraesCS5B01G471700 chr2D 85.044 341 22 17 1004 1344 414401596 414401907 1.310000e-83 320.0
26 TraesCS5B01G471700 chr3A 86.385 213 19 3 1614 1825 71235847 71235644 1.060000e-54 224.0
27 TraesCS5B01G471700 chr3A 95.699 93 2 2 2839 2931 640747363 640747273 6.540000e-32 148.0
28 TraesCS5B01G471700 chr6B 84.946 186 24 3 1601 1786 39324848 39324667 4.990000e-43 185.0
29 TraesCS5B01G471700 chr6B 94.624 93 5 0 2839 2931 632533027 632532935 8.470000e-31 145.0
30 TraesCS5B01G471700 chr3B 96.939 98 3 0 2834 2931 750503625 750503722 6.500000e-37 165.0
31 TraesCS5B01G471700 chr3B 73.392 342 51 29 1 328 718350666 718350981 1.120000e-14 91.6
32 TraesCS5B01G471700 chr3B 91.489 47 1 1 345 388 718350980 718351026 8.770000e-06 62.1
33 TraesCS5B01G471700 chrUn 94.845 97 5 0 2835 2931 337950282 337950186 5.060000e-33 152.0
34 TraesCS5B01G471700 chrUn 94.845 97 5 0 2835 2931 337959455 337959551 5.060000e-33 152.0
35 TraesCS5B01G471700 chrUn 94.845 97 5 0 2835 2931 427501081 427500985 5.060000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G471700 chr5B 644888681 644891611 2930 False 5413.000000 5413 100.000000 1 2931 1 chr5B.!!$F3 2930
1 TraesCS5B01G471700 chr5A 641731908 641735184 3276 False 994.666667 1862 89.456333 1 2593 3 chr5A.!!$F1 2592
2 TraesCS5B01G471700 chr5A 641683997 641684849 852 True 221.500000 311 83.924000 1 388 2 chr5A.!!$R1 387
3 TraesCS5B01G471700 chr5D 513976296 513979321 3025 False 582.380000 1604 92.933200 1 2109 5 chr5D.!!$F1 2108
4 TraesCS5B01G471700 chr2B 488009081 488009810 729 False 435.500000 580 89.717500 1074 1789 2 chr2B.!!$F1 715
5 TraesCS5B01G471700 chr2A 581577184 581578060 876 False 437.000000 571 86.792000 941 1787 2 chr2A.!!$F1 846
6 TraesCS5B01G471700 chr2D 414401596 414402388 792 False 442.000000 564 88.438000 1004 1789 2 chr2D.!!$F1 785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 1145 2.810439 TTTGCGTGGGAAAAAGGATG 57.19 45.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2593 4762 0.250234 GCTGCTAGGATGTGTGTGGA 59.75 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 623 7.017645 CCTTCAGACACATGAAAAGAAATACG 58.982 38.462 0.00 0.00 38.66 3.06
202 686 7.755373 GGGTAGAGACAGTGATTTTAATTTTGC 59.245 37.037 0.00 0.00 0.00 3.68
305 799 8.244113 CGCCTAGGATTTATTTTTCTTTTGTCT 58.756 33.333 14.75 0.00 0.00 3.41
343 837 5.355350 ACTGAATTTTTAGATGAAGAGGGCG 59.645 40.000 0.00 0.00 0.00 6.13
388 887 5.241728 GTGAACTTGGTTAAGCAAGAGGAAT 59.758 40.000 39.86 24.64 37.43 3.01
405 918 3.641439 GAATGAACATTCAGTCGGACG 57.359 47.619 18.73 0.00 44.89 4.79
528 1055 8.425577 AGTATGGTTTCTCTTGATACAAATCG 57.574 34.615 0.00 0.00 34.60 3.34
572 1119 5.127682 ACAGAAAACTGCAAGATGAACCTTT 59.872 36.000 0.00 0.00 37.43 3.11
573 1120 6.044682 CAGAAAACTGCAAGATGAACCTTTT 58.955 36.000 0.00 0.00 37.43 2.27
574 1121 6.536224 CAGAAAACTGCAAGATGAACCTTTTT 59.464 34.615 0.00 0.00 37.43 1.94
575 1122 7.706179 CAGAAAACTGCAAGATGAACCTTTTTA 59.294 33.333 0.00 0.00 37.43 1.52
576 1123 8.424133 AGAAAACTGCAAGATGAACCTTTTTAT 58.576 29.630 0.00 0.00 37.43 1.40
597 1144 3.828875 TTTTTGCGTGGGAAAAAGGAT 57.171 38.095 4.05 0.00 32.32 3.24
598 1145 2.810439 TTTGCGTGGGAAAAAGGATG 57.190 45.000 0.00 0.00 0.00 3.51
609 1228 6.263617 GTGGGAAAAAGGATGTACAACTGTTA 59.736 38.462 0.00 0.00 0.00 2.41
633 1255 4.154195 CGGCTATAACAAATGTAGGATGCC 59.846 45.833 0.00 0.00 0.00 4.40
653 1275 3.118519 GCCCATGCTTTCAAATGGAGAAT 60.119 43.478 3.24 0.00 45.29 2.40
654 1276 4.099881 GCCCATGCTTTCAAATGGAGAATA 59.900 41.667 3.24 0.00 45.29 1.75
662 1284 5.393068 TTCAAATGGAGAATATCAGGCCT 57.607 39.130 0.00 0.00 0.00 5.19
671 1293 5.994668 GGAGAATATCAGGCCTTGAACTAAG 59.005 44.000 0.00 0.00 39.77 2.18
673 1295 7.202011 GGAGAATATCAGGCCTTGAACTAAGTA 60.202 40.741 0.00 0.00 39.77 2.24
750 1372 7.389053 TGGACAACTTTAAAACATGTTTTGCTT 59.611 29.630 35.69 21.67 42.18 3.91
757 1379 9.853921 CTTTAAAACATGTTTTGCTTCATTCTC 57.146 29.630 35.69 0.00 42.18 2.87
791 1554 7.928908 CAGATGAACTGTAGAATTAGAGAGC 57.071 40.000 0.00 0.00 41.30 4.09
795 1558 9.973450 GATGAACTGTAGAATTAGAGAGCATAA 57.027 33.333 0.00 0.00 0.00 1.90
845 2346 5.373854 ACCATCTCCTTTTATTATCCTGCCT 59.626 40.000 0.00 0.00 0.00 4.75
846 2347 6.562608 ACCATCTCCTTTTATTATCCTGCCTA 59.437 38.462 0.00 0.00 0.00 3.93
847 2348 7.073725 ACCATCTCCTTTTATTATCCTGCCTAA 59.926 37.037 0.00 0.00 0.00 2.69
848 2349 7.944554 CCATCTCCTTTTATTATCCTGCCTAAA 59.055 37.037 0.00 0.00 0.00 1.85
849 2350 8.787852 CATCTCCTTTTATTATCCTGCCTAAAC 58.212 37.037 0.00 0.00 0.00 2.01
850 2351 7.287810 TCTCCTTTTATTATCCTGCCTAAACC 58.712 38.462 0.00 0.00 0.00 3.27
851 2352 7.128883 TCTCCTTTTATTATCCTGCCTAAACCT 59.871 37.037 0.00 0.00 0.00 3.50
852 2353 7.060421 TCCTTTTATTATCCTGCCTAAACCTG 58.940 38.462 0.00 0.00 0.00 4.00
853 2354 6.239036 CCTTTTATTATCCTGCCTAAACCTGC 60.239 42.308 0.00 0.00 0.00 4.85
854 2355 5.646692 TTATTATCCTGCCTAAACCTGCT 57.353 39.130 0.00 0.00 0.00 4.24
919 2420 9.810545 TTTTGGTAAAAATACAACCTCTGAAAG 57.189 29.630 0.00 0.00 34.23 2.62
1043 2555 0.179097 GCCTACCTCTCAAGCTTCCG 60.179 60.000 0.00 0.00 0.00 4.30
1364 2885 6.191315 CACTCCTACCATATATAGCACCTCT 58.809 44.000 0.00 0.00 0.00 3.69
1379 2900 4.100808 AGCACCTCTATCATCCTCAAAGAC 59.899 45.833 0.00 0.00 0.00 3.01
1472 3053 2.125106 GACATCGGGCCGAGCTTT 60.125 61.111 33.82 14.90 39.91 3.51
1790 3378 2.408271 TGACAAGAATGGCCTAGCTG 57.592 50.000 3.32 0.00 31.48 4.24
1868 3475 9.851686 TTTAGTAATGATACTGAGAAATGCCAT 57.148 29.630 0.00 0.00 42.37 4.40
1879 3486 6.660521 ACTGAGAAATGCCATGATTTTAGTCA 59.339 34.615 0.00 0.00 0.00 3.41
1903 3511 3.719268 ACAATTGCCAGAGATACCACA 57.281 42.857 5.05 0.00 0.00 4.17
1930 3538 0.740868 TGGAATGCTTCTTCCGAGCG 60.741 55.000 8.21 0.00 46.47 5.03
1960 3568 8.263640 AGTCAGAGTTAATTATGTGAATGCTCT 58.736 33.333 0.00 0.00 0.00 4.09
1964 3572 5.586243 AGTTAATTATGTGAATGCTCTGCGT 59.414 36.000 0.00 0.00 0.00 5.24
1997 3605 3.290710 ACAGTTCCATGTTTCAGTTGCT 58.709 40.909 0.00 0.00 0.00 3.91
2001 3609 1.337703 TCCATGTTTCAGTTGCTGTGC 59.662 47.619 0.00 0.00 32.61 4.57
2033 3641 5.997746 CCAGTTAGAGTTGATTCAGTTTGGA 59.002 40.000 0.00 0.00 0.00 3.53
2110 3869 2.224066 ACAGACCACCTTCTTCAGTTCG 60.224 50.000 0.00 0.00 0.00 3.95
2117 3897 2.297597 ACCTTCTTCAGTTCGGACAGAG 59.702 50.000 0.00 0.00 0.00 3.35
2129 3909 2.960384 TCGGACAGAGGAAAAGTACACA 59.040 45.455 0.00 0.00 0.00 3.72
2133 3913 4.381411 GACAGAGGAAAAGTACACAAGCT 58.619 43.478 0.00 0.00 0.00 3.74
2213 4377 8.721133 ACTAAATCTCCAAACAAAATTACCCT 57.279 30.769 0.00 0.00 0.00 4.34
2220 4384 5.307456 TCCAAACAAAATTACCCTTTACCCC 59.693 40.000 0.00 0.00 0.00 4.95
2273 4437 2.011222 TGTTGTCTGAAAACGTGGACC 58.989 47.619 6.25 0.00 0.00 4.46
2276 4440 3.823281 TGTCTGAAAACGTGGACCTAA 57.177 42.857 0.00 0.00 0.00 2.69
2308 4472 3.409026 AGAGAAACATCCACACTGACC 57.591 47.619 0.00 0.00 0.00 4.02
2313 4477 2.205022 ACATCCACACTGACCAATGG 57.795 50.000 0.00 0.00 0.00 3.16
2331 4495 5.240183 CCAATGGTGATACTATTTGCAGAGG 59.760 44.000 0.00 0.00 25.97 3.69
2351 4516 7.312154 CAGAGGATGTAACAGCTATACTCATC 58.688 42.308 8.13 8.36 34.82 2.92
2356 4521 7.176865 GGATGTAACAGCTATACTCATCTGGTA 59.823 40.741 9.51 0.00 30.38 3.25
2359 4524 5.991933 ACAGCTATACTCATCTGGTATGG 57.008 43.478 0.00 0.00 32.85 2.74
2360 4525 5.398236 ACAGCTATACTCATCTGGTATGGT 58.602 41.667 0.00 0.00 32.93 3.55
2430 4599 6.862209 ACAGTAAGTTCAGAGAAGCATAGAG 58.138 40.000 0.00 0.00 0.00 2.43
2447 4616 5.861251 GCATAGAGAAAGACAGGATCGTATG 59.139 44.000 0.00 0.00 0.00 2.39
2455 4624 4.219115 AGACAGGATCGTATGGATTGACT 58.781 43.478 0.00 0.00 34.82 3.41
2463 4632 3.958147 TCGTATGGATTGACTTGCTCCTA 59.042 43.478 0.00 0.00 0.00 2.94
2469 4638 4.072131 GGATTGACTTGCTCCTACAAACA 58.928 43.478 0.00 0.00 0.00 2.83
2471 4640 3.838244 TGACTTGCTCCTACAAACAGT 57.162 42.857 0.00 0.00 0.00 3.55
2481 4650 5.505819 GCTCCTACAAACAGTTTCAAGTTCC 60.506 44.000 0.00 0.00 0.00 3.62
2505 4674 3.370953 GCCTTCTTAATTGCCTCTCTCCA 60.371 47.826 0.00 0.00 0.00 3.86
2519 4688 6.008960 GCCTCTCTCCAATCCAAATTCATAT 58.991 40.000 0.00 0.00 0.00 1.78
2520 4689 6.150809 GCCTCTCTCCAATCCAAATTCATATC 59.849 42.308 0.00 0.00 0.00 1.63
2521 4690 7.229308 CCTCTCTCCAATCCAAATTCATATCA 58.771 38.462 0.00 0.00 0.00 2.15
2522 4691 7.722728 CCTCTCTCCAATCCAAATTCATATCAA 59.277 37.037 0.00 0.00 0.00 2.57
2523 4692 9.128404 CTCTCTCCAATCCAAATTCATATCAAA 57.872 33.333 0.00 0.00 0.00 2.69
2524 4693 9.478238 TCTCTCCAATCCAAATTCATATCAAAA 57.522 29.630 0.00 0.00 0.00 2.44
2525 4694 9.525409 CTCTCCAATCCAAATTCATATCAAAAC 57.475 33.333 0.00 0.00 0.00 2.43
2526 4695 8.190122 TCTCCAATCCAAATTCATATCAAAACG 58.810 33.333 0.00 0.00 0.00 3.60
2527 4696 7.264221 TCCAATCCAAATTCATATCAAAACGG 58.736 34.615 0.00 0.00 0.00 4.44
2535 4704 5.461032 TTCATATCAAAACGGCAAAACCT 57.539 34.783 0.00 0.00 35.61 3.50
2550 4719 4.787598 CAAAACCTTGCATGACTACAGTC 58.212 43.478 0.00 2.29 44.97 3.51
2593 4762 3.099141 CTGATTAAGCCCCAAACACCAT 58.901 45.455 0.00 0.00 0.00 3.55
2594 4763 3.096092 TGATTAAGCCCCAAACACCATC 58.904 45.455 0.00 0.00 0.00 3.51
2595 4764 1.931635 TTAAGCCCCAAACACCATCC 58.068 50.000 0.00 0.00 0.00 3.51
2596 4765 0.780637 TAAGCCCCAAACACCATCCA 59.219 50.000 0.00 0.00 0.00 3.41
2597 4766 0.831711 AAGCCCCAAACACCATCCAC 60.832 55.000 0.00 0.00 0.00 4.02
2598 4767 1.532794 GCCCCAAACACCATCCACA 60.533 57.895 0.00 0.00 0.00 4.17
2599 4768 1.815817 GCCCCAAACACCATCCACAC 61.816 60.000 0.00 0.00 0.00 3.82
2600 4769 0.468958 CCCCAAACACCATCCACACA 60.469 55.000 0.00 0.00 0.00 3.72
2601 4770 0.673437 CCCAAACACCATCCACACAC 59.327 55.000 0.00 0.00 0.00 3.82
2602 4771 1.397672 CCAAACACCATCCACACACA 58.602 50.000 0.00 0.00 0.00 3.72
2603 4772 1.962807 CCAAACACCATCCACACACAT 59.037 47.619 0.00 0.00 0.00 3.21
2604 4773 2.030007 CCAAACACCATCCACACACATC 60.030 50.000 0.00 0.00 0.00 3.06
2605 4774 1.909700 AACACCATCCACACACATCC 58.090 50.000 0.00 0.00 0.00 3.51
2606 4775 1.067295 ACACCATCCACACACATCCT 58.933 50.000 0.00 0.00 0.00 3.24
2607 4776 2.265367 ACACCATCCACACACATCCTA 58.735 47.619 0.00 0.00 0.00 2.94
2608 4777 2.237143 ACACCATCCACACACATCCTAG 59.763 50.000 0.00 0.00 0.00 3.02
2609 4778 1.210478 ACCATCCACACACATCCTAGC 59.790 52.381 0.00 0.00 0.00 3.42
2610 4779 1.210234 CCATCCACACACATCCTAGCA 59.790 52.381 0.00 0.00 0.00 3.49
2611 4780 2.558378 CATCCACACACATCCTAGCAG 58.442 52.381 0.00 0.00 0.00 4.24
2612 4781 0.250234 TCCACACACATCCTAGCAGC 59.750 55.000 0.00 0.00 0.00 5.25
2613 4782 0.251354 CCACACACATCCTAGCAGCT 59.749 55.000 0.00 0.00 0.00 4.24
2614 4783 1.482182 CCACACACATCCTAGCAGCTA 59.518 52.381 1.13 1.13 0.00 3.32
2615 4784 2.093500 CCACACACATCCTAGCAGCTAA 60.093 50.000 3.09 0.00 0.00 3.09
2616 4785 3.432749 CCACACACATCCTAGCAGCTAAT 60.433 47.826 3.09 0.00 0.00 1.73
2617 4786 4.194640 CACACACATCCTAGCAGCTAATT 58.805 43.478 3.09 0.00 0.00 1.40
2618 4787 5.359756 CACACACATCCTAGCAGCTAATTA 58.640 41.667 3.09 0.00 0.00 1.40
2619 4788 5.817296 CACACACATCCTAGCAGCTAATTAA 59.183 40.000 3.09 0.00 0.00 1.40
2620 4789 6.018425 CACACACATCCTAGCAGCTAATTAAG 60.018 42.308 3.09 0.00 0.00 1.85
2621 4790 6.051717 CACACATCCTAGCAGCTAATTAAGT 58.948 40.000 3.09 0.00 0.00 2.24
2622 4791 7.147724 ACACACATCCTAGCAGCTAATTAAGTA 60.148 37.037 3.09 0.00 0.00 2.24
2623 4792 7.169982 CACACATCCTAGCAGCTAATTAAGTAC 59.830 40.741 3.09 0.00 0.00 2.73
2624 4793 7.070074 ACACATCCTAGCAGCTAATTAAGTACT 59.930 37.037 3.09 0.00 0.00 2.73
2625 4794 8.577296 CACATCCTAGCAGCTAATTAAGTACTA 58.423 37.037 3.09 0.00 0.00 1.82
2626 4795 8.798402 ACATCCTAGCAGCTAATTAAGTACTAG 58.202 37.037 3.09 0.00 0.00 2.57
2627 4796 8.798402 CATCCTAGCAGCTAATTAAGTACTAGT 58.202 37.037 3.09 0.00 0.00 2.57
2629 4798 9.504708 TCCTAGCAGCTAATTAAGTACTAGTAG 57.495 37.037 1.87 0.00 0.00 2.57
2630 4799 9.504708 CCTAGCAGCTAATTAAGTACTAGTAGA 57.495 37.037 1.87 0.00 0.00 2.59
2633 4802 9.411189 AGCAGCTAATTAAGTACTAGTAGAAGT 57.589 33.333 1.87 0.56 0.00 3.01
2644 4813 8.709272 AGTACTAGTAGAAGTTTTGGAGAACT 57.291 34.615 1.87 0.00 41.44 3.01
2645 4814 9.804977 AGTACTAGTAGAAGTTTTGGAGAACTA 57.195 33.333 1.87 0.00 38.86 2.24
2662 4831 9.720769 TGGAGAACTAAATAAAGAACTAACCTG 57.279 33.333 0.00 0.00 0.00 4.00
2663 4832 9.163899 GGAGAACTAAATAAAGAACTAACCTGG 57.836 37.037 0.00 0.00 0.00 4.45
2664 4833 8.563123 AGAACTAAATAAAGAACTAACCTGGC 57.437 34.615 0.00 0.00 0.00 4.85
2665 4834 8.383947 AGAACTAAATAAAGAACTAACCTGGCT 58.616 33.333 0.00 0.00 0.00 4.75
2666 4835 9.662947 GAACTAAATAAAGAACTAACCTGGCTA 57.337 33.333 0.00 0.00 0.00 3.93
2667 4836 9.445878 AACTAAATAAAGAACTAACCTGGCTAC 57.554 33.333 0.00 0.00 0.00 3.58
2668 4837 6.980051 AAATAAAGAACTAACCTGGCTACG 57.020 37.500 0.00 0.00 0.00 3.51
2669 4838 3.329929 AAAGAACTAACCTGGCTACGG 57.670 47.619 0.00 0.00 0.00 4.02
2670 4839 0.535797 AGAACTAACCTGGCTACGGC 59.464 55.000 0.00 0.00 37.82 5.68
2671 4840 0.535797 GAACTAACCTGGCTACGGCT 59.464 55.000 0.00 0.00 38.73 5.52
2672 4841 0.535797 AACTAACCTGGCTACGGCTC 59.464 55.000 0.00 0.00 38.73 4.70
2673 4842 0.324460 ACTAACCTGGCTACGGCTCT 60.324 55.000 0.00 0.00 38.73 4.09
2674 4843 1.064166 ACTAACCTGGCTACGGCTCTA 60.064 52.381 0.00 0.00 38.73 2.43
2675 4844 1.337387 CTAACCTGGCTACGGCTCTAC 59.663 57.143 0.00 0.00 38.73 2.59
2676 4845 0.324460 AACCTGGCTACGGCTCTACT 60.324 55.000 0.00 0.00 38.73 2.57
2677 4846 0.324460 ACCTGGCTACGGCTCTACTT 60.324 55.000 0.00 0.00 38.73 2.24
2678 4847 0.103208 CCTGGCTACGGCTCTACTTG 59.897 60.000 0.00 0.00 38.73 3.16
2679 4848 0.528684 CTGGCTACGGCTCTACTTGC 60.529 60.000 0.00 0.00 38.73 4.01
2680 4849 0.970937 TGGCTACGGCTCTACTTGCT 60.971 55.000 0.00 0.00 38.73 3.91
2681 4850 0.175989 GGCTACGGCTCTACTTGCTT 59.824 55.000 0.00 0.00 38.73 3.91
2682 4851 1.562017 GCTACGGCTCTACTTGCTTC 58.438 55.000 0.00 0.00 35.22 3.86
2683 4852 1.135083 GCTACGGCTCTACTTGCTTCA 60.135 52.381 0.00 0.00 35.22 3.02
2684 4853 2.482142 GCTACGGCTCTACTTGCTTCAT 60.482 50.000 0.00 0.00 35.22 2.57
2685 4854 3.243434 GCTACGGCTCTACTTGCTTCATA 60.243 47.826 0.00 0.00 35.22 2.15
2686 4855 3.444703 ACGGCTCTACTTGCTTCATAG 57.555 47.619 0.00 0.00 0.00 2.23
2687 4856 3.024547 ACGGCTCTACTTGCTTCATAGA 58.975 45.455 0.00 0.00 0.00 1.98
2688 4857 3.067461 ACGGCTCTACTTGCTTCATAGAG 59.933 47.826 3.62 3.62 43.22 2.43
2689 4858 3.316588 CGGCTCTACTTGCTTCATAGAGA 59.683 47.826 10.88 0.00 43.08 3.10
2690 4859 4.202060 CGGCTCTACTTGCTTCATAGAGAA 60.202 45.833 10.88 0.00 43.08 2.87
2691 4860 5.665459 GGCTCTACTTGCTTCATAGAGAAA 58.335 41.667 10.88 0.00 43.08 2.52
2692 4861 5.752955 GGCTCTACTTGCTTCATAGAGAAAG 59.247 44.000 10.88 0.00 43.08 2.62
2693 4862 6.406400 GGCTCTACTTGCTTCATAGAGAAAGA 60.406 42.308 10.88 0.00 43.08 2.52
2694 4863 6.475402 GCTCTACTTGCTTCATAGAGAAAGAC 59.525 42.308 10.88 0.00 43.08 3.01
2695 4864 7.468141 TCTACTTGCTTCATAGAGAAAGACA 57.532 36.000 0.00 0.00 35.40 3.41
2696 4865 8.072321 TCTACTTGCTTCATAGAGAAAGACAT 57.928 34.615 0.00 0.00 35.40 3.06
2697 4866 6.981762 ACTTGCTTCATAGAGAAAGACATG 57.018 37.500 0.00 0.00 35.40 3.21
2698 4867 6.705302 ACTTGCTTCATAGAGAAAGACATGA 58.295 36.000 0.00 0.00 35.40 3.07
2699 4868 7.337167 ACTTGCTTCATAGAGAAAGACATGAT 58.663 34.615 0.00 0.00 35.40 2.45
2700 4869 7.495279 ACTTGCTTCATAGAGAAAGACATGATC 59.505 37.037 0.00 0.00 35.40 2.92
2701 4870 6.881570 TGCTTCATAGAGAAAGACATGATCA 58.118 36.000 0.00 0.00 35.40 2.92
2702 4871 7.506971 TGCTTCATAGAGAAAGACATGATCAT 58.493 34.615 1.18 1.18 35.40 2.45
2703 4872 8.645110 TGCTTCATAGAGAAAGACATGATCATA 58.355 33.333 8.15 0.00 35.40 2.15
2704 4873 8.924691 GCTTCATAGAGAAAGACATGATCATAC 58.075 37.037 8.15 5.95 35.40 2.39
2705 4874 9.978044 CTTCATAGAGAAAGACATGATCATACA 57.022 33.333 8.15 0.00 35.40 2.29
2706 4875 9.978044 TTCATAGAGAAAGACATGATCATACAG 57.022 33.333 8.15 0.00 32.05 2.74
2707 4876 8.087136 TCATAGAGAAAGACATGATCATACAGC 58.913 37.037 8.15 0.00 0.00 4.40
2708 4877 6.482898 AGAGAAAGACATGATCATACAGCT 57.517 37.500 8.15 1.54 0.00 4.24
2709 4878 6.887013 AGAGAAAGACATGATCATACAGCTT 58.113 36.000 8.15 6.77 0.00 3.74
2710 4879 6.762187 AGAGAAAGACATGATCATACAGCTTG 59.238 38.462 8.15 0.00 0.00 4.01
2711 4880 6.647229 AGAAAGACATGATCATACAGCTTGA 58.353 36.000 8.15 0.00 0.00 3.02
2712 4881 6.538021 AGAAAGACATGATCATACAGCTTGAC 59.462 38.462 8.15 7.71 0.00 3.18
2713 4882 5.611128 AGACATGATCATACAGCTTGACT 57.389 39.130 8.15 0.00 0.00 3.41
2714 4883 5.987098 AGACATGATCATACAGCTTGACTT 58.013 37.500 8.15 0.00 0.00 3.01
2715 4884 7.117285 AGACATGATCATACAGCTTGACTTA 57.883 36.000 8.15 0.00 0.00 2.24
2716 4885 6.983307 AGACATGATCATACAGCTTGACTTAC 59.017 38.462 8.15 0.00 0.00 2.34
2717 4886 6.882656 ACATGATCATACAGCTTGACTTACT 58.117 36.000 8.15 0.00 0.00 2.24
2718 4887 6.983307 ACATGATCATACAGCTTGACTTACTC 59.017 38.462 8.15 0.00 0.00 2.59
2719 4888 5.907207 TGATCATACAGCTTGACTTACTCC 58.093 41.667 0.00 0.00 0.00 3.85
2720 4889 5.658634 TGATCATACAGCTTGACTTACTCCT 59.341 40.000 0.00 0.00 0.00 3.69
2721 4890 5.330455 TCATACAGCTTGACTTACTCCTG 57.670 43.478 0.00 0.00 0.00 3.86
2722 4891 2.464157 ACAGCTTGACTTACTCCTGC 57.536 50.000 0.00 0.00 0.00 4.85
2723 4892 1.694150 ACAGCTTGACTTACTCCTGCA 59.306 47.619 0.00 0.00 0.00 4.41
2724 4893 2.104792 ACAGCTTGACTTACTCCTGCAA 59.895 45.455 0.00 0.00 0.00 4.08
2725 4894 2.481952 CAGCTTGACTTACTCCTGCAAC 59.518 50.000 0.00 0.00 0.00 4.17
2726 4895 2.104792 AGCTTGACTTACTCCTGCAACA 59.895 45.455 0.00 0.00 0.00 3.33
2727 4896 3.077359 GCTTGACTTACTCCTGCAACAT 58.923 45.455 0.00 0.00 0.00 2.71
2728 4897 3.503748 GCTTGACTTACTCCTGCAACATT 59.496 43.478 0.00 0.00 0.00 2.71
2729 4898 4.022849 GCTTGACTTACTCCTGCAACATTT 60.023 41.667 0.00 0.00 0.00 2.32
2730 4899 5.507985 GCTTGACTTACTCCTGCAACATTTT 60.508 40.000 0.00 0.00 0.00 1.82
2731 4900 5.437289 TGACTTACTCCTGCAACATTTTG 57.563 39.130 0.00 0.00 35.62 2.44
2732 4901 5.129634 TGACTTACTCCTGCAACATTTTGA 58.870 37.500 0.00 0.00 34.24 2.69
2733 4902 5.769662 TGACTTACTCCTGCAACATTTTGAT 59.230 36.000 0.00 0.00 34.24 2.57
2734 4903 6.017400 ACTTACTCCTGCAACATTTTGATG 57.983 37.500 0.00 0.00 34.24 3.07
2735 4904 5.536161 ACTTACTCCTGCAACATTTTGATGT 59.464 36.000 0.00 0.00 34.24 3.06
2736 4905 4.942761 ACTCCTGCAACATTTTGATGTT 57.057 36.364 0.00 0.00 44.79 2.71
2737 4906 5.280654 ACTCCTGCAACATTTTGATGTTT 57.719 34.783 2.24 0.00 42.32 2.83
2738 4907 5.291971 ACTCCTGCAACATTTTGATGTTTC 58.708 37.500 2.24 0.00 42.32 2.78
2739 4908 5.163426 ACTCCTGCAACATTTTGATGTTTCA 60.163 36.000 2.24 3.73 42.32 2.69
2740 4909 5.049167 TCCTGCAACATTTTGATGTTTCAC 58.951 37.500 2.24 0.00 42.32 3.18
2741 4910 4.084952 CCTGCAACATTTTGATGTTTCACG 60.085 41.667 2.24 0.00 42.32 4.35
2742 4911 4.428209 TGCAACATTTTGATGTTTCACGT 58.572 34.783 2.24 0.00 42.32 4.49
2743 4912 4.867047 TGCAACATTTTGATGTTTCACGTT 59.133 33.333 2.24 0.00 42.32 3.99
2744 4913 5.005203 TGCAACATTTTGATGTTTCACGTTC 59.995 36.000 2.24 0.00 42.32 3.95
2745 4914 5.556194 GCAACATTTTGATGTTTCACGTTCC 60.556 40.000 2.24 0.00 42.32 3.62
2746 4915 5.255710 ACATTTTGATGTTTCACGTTCCA 57.744 34.783 0.00 0.00 0.00 3.53
2747 4916 5.655488 ACATTTTGATGTTTCACGTTCCAA 58.345 33.333 0.00 0.00 0.00 3.53
2748 4917 6.279882 ACATTTTGATGTTTCACGTTCCAAT 58.720 32.000 0.00 0.00 0.00 3.16
2749 4918 6.420604 ACATTTTGATGTTTCACGTTCCAATC 59.579 34.615 0.00 0.00 0.00 2.67
2750 4919 4.497473 TTGATGTTTCACGTTCCAATCC 57.503 40.909 0.00 0.00 0.00 3.01
2751 4920 3.750371 TGATGTTTCACGTTCCAATCCT 58.250 40.909 0.00 0.00 0.00 3.24
2752 4921 4.141287 TGATGTTTCACGTTCCAATCCTT 58.859 39.130 0.00 0.00 0.00 3.36
2753 4922 4.582656 TGATGTTTCACGTTCCAATCCTTT 59.417 37.500 0.00 0.00 0.00 3.11
2754 4923 4.993029 TGTTTCACGTTCCAATCCTTTT 57.007 36.364 0.00 0.00 0.00 2.27
2755 4924 4.677584 TGTTTCACGTTCCAATCCTTTTG 58.322 39.130 0.00 0.00 0.00 2.44
2756 4925 4.399618 TGTTTCACGTTCCAATCCTTTTGA 59.600 37.500 0.00 0.00 0.00 2.69
2757 4926 5.068460 TGTTTCACGTTCCAATCCTTTTGAT 59.932 36.000 0.00 0.00 34.22 2.57
2758 4927 5.782893 TTCACGTTCCAATCCTTTTGATT 57.217 34.783 0.00 0.00 44.67 2.57
2767 4936 2.514458 TCCTTTTGATTGCCTCTCCC 57.486 50.000 0.00 0.00 0.00 4.30
2768 4937 1.005924 TCCTTTTGATTGCCTCTCCCC 59.994 52.381 0.00 0.00 0.00 4.81
2769 4938 1.272648 CCTTTTGATTGCCTCTCCCCA 60.273 52.381 0.00 0.00 0.00 4.96
2770 4939 2.528564 CTTTTGATTGCCTCTCCCCAA 58.471 47.619 0.00 0.00 0.00 4.12
2771 4940 1.923356 TTTGATTGCCTCTCCCCAAC 58.077 50.000 0.00 0.00 0.00 3.77
2772 4941 0.039618 TTGATTGCCTCTCCCCAACC 59.960 55.000 0.00 0.00 0.00 3.77
2773 4942 1.076705 GATTGCCTCTCCCCAACCC 60.077 63.158 0.00 0.00 0.00 4.11
2774 4943 1.856873 ATTGCCTCTCCCCAACCCA 60.857 57.895 0.00 0.00 0.00 4.51
2775 4944 1.867595 ATTGCCTCTCCCCAACCCAG 61.868 60.000 0.00 0.00 0.00 4.45
2776 4945 2.610859 GCCTCTCCCCAACCCAGA 60.611 66.667 0.00 0.00 0.00 3.86
2777 4946 2.003548 GCCTCTCCCCAACCCAGAT 61.004 63.158 0.00 0.00 0.00 2.90
2778 4947 1.575447 GCCTCTCCCCAACCCAGATT 61.575 60.000 0.00 0.00 0.00 2.40
2779 4948 1.002857 CCTCTCCCCAACCCAGATTT 58.997 55.000 0.00 0.00 0.00 2.17
2780 4949 1.064389 CCTCTCCCCAACCCAGATTTC 60.064 57.143 0.00 0.00 0.00 2.17
2781 4950 1.635487 CTCTCCCCAACCCAGATTTCA 59.365 52.381 0.00 0.00 0.00 2.69
2782 4951 2.243221 CTCTCCCCAACCCAGATTTCAT 59.757 50.000 0.00 0.00 0.00 2.57
2783 4952 3.459598 CTCTCCCCAACCCAGATTTCATA 59.540 47.826 0.00 0.00 0.00 2.15
2784 4953 3.855599 TCTCCCCAACCCAGATTTCATAA 59.144 43.478 0.00 0.00 0.00 1.90
2785 4954 3.954258 CTCCCCAACCCAGATTTCATAAC 59.046 47.826 0.00 0.00 0.00 1.89
2786 4955 3.335183 TCCCCAACCCAGATTTCATAACA 59.665 43.478 0.00 0.00 0.00 2.41
2787 4956 4.093011 CCCCAACCCAGATTTCATAACAA 58.907 43.478 0.00 0.00 0.00 2.83
2788 4957 4.530161 CCCCAACCCAGATTTCATAACAAA 59.470 41.667 0.00 0.00 0.00 2.83
2789 4958 5.012561 CCCCAACCCAGATTTCATAACAAAA 59.987 40.000 0.00 0.00 0.00 2.44
2790 4959 6.465035 CCCCAACCCAGATTTCATAACAAAAA 60.465 38.462 0.00 0.00 0.00 1.94
2791 4960 7.167535 CCCAACCCAGATTTCATAACAAAAAT 58.832 34.615 0.00 0.00 0.00 1.82
2792 4961 8.317679 CCCAACCCAGATTTCATAACAAAAATA 58.682 33.333 0.00 0.00 0.00 1.40
2793 4962 9.150348 CCAACCCAGATTTCATAACAAAAATAC 57.850 33.333 0.00 0.00 0.00 1.89
2794 4963 9.703892 CAACCCAGATTTCATAACAAAAATACA 57.296 29.630 0.00 0.00 0.00 2.29
2833 5002 1.471119 CTAAGGTAGCTCCGACCACA 58.529 55.000 6.91 0.00 39.65 4.17
2834 5003 1.405821 CTAAGGTAGCTCCGACCACAG 59.594 57.143 6.91 0.00 39.65 3.66
2835 5004 1.889530 AAGGTAGCTCCGACCACAGC 61.890 60.000 6.91 0.00 39.65 4.40
2837 5006 1.139947 GTAGCTCCGACCACAGCTC 59.860 63.158 0.00 0.00 42.60 4.09
2838 5007 1.304134 TAGCTCCGACCACAGCTCA 60.304 57.895 0.00 0.00 42.60 4.26
2839 5008 1.315981 TAGCTCCGACCACAGCTCAG 61.316 60.000 0.00 0.00 42.60 3.35
2840 5009 2.575993 CTCCGACCACAGCTCAGG 59.424 66.667 0.00 0.00 0.00 3.86
2841 5010 2.997315 TCCGACCACAGCTCAGGG 60.997 66.667 5.97 0.00 0.00 4.45
2842 5011 4.767255 CCGACCACAGCTCAGGGC 62.767 72.222 5.97 1.38 42.19 5.19
2843 5012 4.007644 CGACCACAGCTCAGGGCA 62.008 66.667 7.55 0.00 44.79 5.36
2844 5013 2.673523 GACCACAGCTCAGGGCAT 59.326 61.111 1.81 0.00 44.79 4.40
2845 5014 1.451028 GACCACAGCTCAGGGCATC 60.451 63.158 1.81 0.00 44.79 3.91
2846 5015 1.908340 GACCACAGCTCAGGGCATCT 61.908 60.000 1.81 0.00 44.79 2.90
2847 5016 1.153208 CCACAGCTCAGGGCATCTC 60.153 63.158 0.00 0.00 44.79 2.75
2848 5017 1.153208 CACAGCTCAGGGCATCTCC 60.153 63.158 0.00 0.00 44.79 3.71
2849 5018 1.614525 ACAGCTCAGGGCATCTCCA 60.615 57.895 0.00 0.00 44.79 3.86
2850 5019 1.146485 CAGCTCAGGGCATCTCCAG 59.854 63.158 0.00 0.00 44.79 3.86
2851 5020 2.203181 GCTCAGGGCATCTCCAGC 60.203 66.667 0.00 0.00 41.35 4.85
2859 5028 4.899239 CATCTCCAGCCGCGTCCC 62.899 72.222 4.92 0.00 0.00 4.46
2871 5040 4.410400 CGTCCCCAACAGGCCCTC 62.410 72.222 0.00 0.00 0.00 4.30
2872 5041 4.048470 GTCCCCAACAGGCCCTCC 62.048 72.222 0.00 0.00 0.00 4.30
2876 5045 3.589542 CCAACAGGCCCTCCCCAA 61.590 66.667 0.00 0.00 0.00 4.12
2877 5046 2.036256 CAACAGGCCCTCCCCAAG 59.964 66.667 0.00 0.00 0.00 3.61
2878 5047 3.984732 AACAGGCCCTCCCCAAGC 61.985 66.667 0.00 0.00 0.00 4.01
2882 5051 4.129148 GGCCCTCCCCAAGCGATT 62.129 66.667 0.00 0.00 0.00 3.34
2883 5052 2.043953 GCCCTCCCCAAGCGATTT 60.044 61.111 0.00 0.00 0.00 2.17
2884 5053 1.682344 GCCCTCCCCAAGCGATTTT 60.682 57.895 0.00 0.00 0.00 1.82
2885 5054 1.948721 GCCCTCCCCAAGCGATTTTG 61.949 60.000 0.00 0.00 0.00 2.44
2886 5055 1.512694 CCTCCCCAAGCGATTTTGC 59.487 57.895 0.00 0.00 0.00 3.68
2887 5056 1.512694 CTCCCCAAGCGATTTTGCC 59.487 57.895 0.00 0.00 34.65 4.52
2888 5057 2.181525 CCCCAAGCGATTTTGCCG 59.818 61.111 0.00 0.00 34.65 5.69
2918 5087 2.983592 AAAAAGGCCCCAGTCGCG 60.984 61.111 0.00 0.00 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 495 6.092944 TGAATCAACTAACCGCATTAACGAAT 59.907 34.615 0.00 0.00 34.06 3.34
96 575 5.652994 AAGGTGTACTTCTCATCTGTCTC 57.347 43.478 0.00 0.00 32.85 3.36
140 623 4.218635 TCATCTGTCTGAAGGTGTACTCAC 59.781 45.833 0.00 0.00 43.19 3.51
231 719 8.128322 TGCCATTTATTTACCTACACAATGTT 57.872 30.769 0.00 0.00 0.00 2.71
305 799 9.231297 CTAAAAATTCAGTTCAGGATTACAGGA 57.769 33.333 0.00 0.00 0.00 3.86
343 837 0.329596 AGTTCAGGATCAGGGGCAAC 59.670 55.000 0.00 0.00 0.00 4.17
388 887 2.060326 GTCGTCCGACTGAATGTTCA 57.940 50.000 12.31 0.00 41.57 3.18
401 900 3.181500 GGCAAATACAAATCCAGTCGTCC 60.181 47.826 0.00 0.00 0.00 4.79
405 918 3.065371 CGGAGGCAAATACAAATCCAGTC 59.935 47.826 0.00 0.00 0.00 3.51
459 986 6.279513 TGTTTTGGTTGTCTGAACTCAAAT 57.720 33.333 0.00 0.00 0.00 2.32
584 1131 4.583073 ACAGTTGTACATCCTTTTTCCCAC 59.417 41.667 0.00 0.00 0.00 4.61
594 1141 2.968675 AGCCGTAACAGTTGTACATCC 58.031 47.619 0.00 0.00 0.00 3.51
595 1142 6.753279 TGTTATAGCCGTAACAGTTGTACATC 59.247 38.462 0.00 0.00 39.08 3.06
596 1143 6.632909 TGTTATAGCCGTAACAGTTGTACAT 58.367 36.000 0.00 0.00 39.08 2.29
597 1144 6.023357 TGTTATAGCCGTAACAGTTGTACA 57.977 37.500 7.28 0.00 39.08 2.90
598 1145 6.949578 TTGTTATAGCCGTAACAGTTGTAC 57.050 37.500 10.33 0.00 43.27 2.90
609 1228 4.755123 GCATCCTACATTTGTTATAGCCGT 59.245 41.667 0.00 0.00 0.00 5.68
633 1255 7.046292 TGATATTCTCCATTTGAAAGCATGG 57.954 36.000 0.00 0.00 41.39 3.66
653 1275 7.432148 TCAATACTTAGTTCAAGGCCTGATA 57.568 36.000 5.69 0.00 38.70 2.15
654 1276 6.313519 TCAATACTTAGTTCAAGGCCTGAT 57.686 37.500 5.69 0.00 38.70 2.90
662 1284 5.709631 TGCATGCCTTCAATACTTAGTTCAA 59.290 36.000 16.68 0.00 0.00 2.69
671 1293 1.678101 GGTCCTGCATGCCTTCAATAC 59.322 52.381 16.68 3.71 0.00 1.89
673 1295 0.040058 TGGTCCTGCATGCCTTCAAT 59.960 50.000 16.68 0.00 0.00 2.57
750 1372 4.958581 TCATCTGCCTGAAGTAGAGAATGA 59.041 41.667 0.00 0.00 40.87 2.57
795 1558 8.593945 TGCCATTTCTTCATCTACCTAAAATT 57.406 30.769 0.00 0.00 0.00 1.82
797 1560 7.093945 GGTTGCCATTTCTTCATCTACCTAAAA 60.094 37.037 0.00 0.00 0.00 1.52
798 1561 6.377146 GGTTGCCATTTCTTCATCTACCTAAA 59.623 38.462 0.00 0.00 0.00 1.85
801 1564 4.263905 TGGTTGCCATTTCTTCATCTACCT 60.264 41.667 0.00 0.00 0.00 3.08
802 1565 4.016444 TGGTTGCCATTTCTTCATCTACC 58.984 43.478 0.00 0.00 0.00 3.18
845 2346 5.720041 ACTACACTGATCCTAAGCAGGTTTA 59.280 40.000 0.00 0.00 43.33 2.01
846 2347 4.532521 ACTACACTGATCCTAAGCAGGTTT 59.467 41.667 0.00 0.00 43.33 3.27
847 2348 4.097418 ACTACACTGATCCTAAGCAGGTT 58.903 43.478 0.00 0.00 43.33 3.50
848 2349 3.714144 ACTACACTGATCCTAAGCAGGT 58.286 45.455 0.00 0.00 43.33 4.00
849 2350 4.744795 AACTACACTGATCCTAAGCAGG 57.255 45.455 0.00 0.00 43.33 4.85
850 2351 5.349817 CACAAACTACACTGATCCTAAGCAG 59.650 44.000 0.00 0.00 44.61 4.24
851 2352 5.237815 CACAAACTACACTGATCCTAAGCA 58.762 41.667 0.00 0.00 0.00 3.91
852 2353 4.631813 CCACAAACTACACTGATCCTAAGC 59.368 45.833 0.00 0.00 0.00 3.09
853 2354 5.178797 CCCACAAACTACACTGATCCTAAG 58.821 45.833 0.00 0.00 0.00 2.18
854 2355 4.019681 CCCCACAAACTACACTGATCCTAA 60.020 45.833 0.00 0.00 0.00 2.69
1190 2708 2.034532 TGTGGAGCACAGGCATGG 59.965 61.111 2.31 0.00 44.61 3.66
1191 2709 3.271014 GTGTGGAGCACAGGCATG 58.729 61.111 0.00 0.00 45.43 4.06
1364 2885 5.824624 GCCATGAAAGTCTTTGAGGATGATA 59.175 40.000 1.60 0.00 0.00 2.15
1379 2900 0.107993 TCTCCTCTGCGCCATGAAAG 60.108 55.000 4.18 0.00 0.00 2.62
1868 3475 6.990798 TGGCAATTGTTCATGACTAAAATCA 58.009 32.000 7.40 0.00 0.00 2.57
1879 3486 4.641989 GTGGTATCTCTGGCAATTGTTCAT 59.358 41.667 7.40 0.00 0.00 2.57
1889 3496 2.770164 AACTGTGTGGTATCTCTGGC 57.230 50.000 0.00 0.00 0.00 4.85
1890 3497 5.104941 TCCATTAACTGTGTGGTATCTCTGG 60.105 44.000 6.92 0.00 34.61 3.86
1891 3498 5.977635 TCCATTAACTGTGTGGTATCTCTG 58.022 41.667 6.92 0.00 34.61 3.35
1973 3581 4.439974 GCAACTGAAACATGGAACTGTTCA 60.440 41.667 21.01 8.66 38.38 3.18
1974 3582 4.044426 GCAACTGAAACATGGAACTGTTC 58.956 43.478 12.05 12.05 38.38 3.18
1982 3590 1.338973 AGCACAGCAACTGAAACATGG 59.661 47.619 0.78 0.00 35.18 3.66
1984 3592 1.265095 CGAGCACAGCAACTGAAACAT 59.735 47.619 0.78 0.00 35.18 2.71
1997 3605 3.319972 ACTCTAACTGGTTAACGAGCACA 59.680 43.478 16.60 0.00 0.00 4.57
2001 3609 6.866770 TGAATCAACTCTAACTGGTTAACGAG 59.133 38.462 15.27 15.27 0.00 4.18
2033 3641 5.128827 TGAAACCTGTACTCTGTCTTCAAGT 59.871 40.000 0.00 0.00 0.00 3.16
2110 3869 3.498777 GCTTGTGTACTTTTCCTCTGTCC 59.501 47.826 0.00 0.00 0.00 4.02
2117 3897 4.212214 CAGTCTGAGCTTGTGTACTTTTCC 59.788 45.833 0.00 0.00 0.00 3.13
2129 3909 3.201290 CAACAAGACACAGTCTGAGCTT 58.799 45.455 6.91 4.24 42.59 3.74
2133 3913 2.988010 AGCAACAAGACACAGTCTGA 57.012 45.000 6.91 0.00 42.59 3.27
2199 4363 7.016465 GGTAAGGGGTAAAGGGTAATTTTGTTT 59.984 37.037 0.00 0.00 0.00 2.83
2202 4366 5.422970 GGGTAAGGGGTAAAGGGTAATTTTG 59.577 44.000 0.00 0.00 0.00 2.44
2207 4371 3.304395 TGGGTAAGGGGTAAAGGGTAA 57.696 47.619 0.00 0.00 0.00 2.85
2208 4372 3.304395 TTGGGTAAGGGGTAAAGGGTA 57.696 47.619 0.00 0.00 0.00 3.69
2209 4373 2.152680 TTGGGTAAGGGGTAAAGGGT 57.847 50.000 0.00 0.00 0.00 4.34
2210 4374 3.769189 ATTTGGGTAAGGGGTAAAGGG 57.231 47.619 0.00 0.00 0.00 3.95
2211 4375 5.834460 AGTTATTTGGGTAAGGGGTAAAGG 58.166 41.667 0.00 0.00 0.00 3.11
2212 4376 5.889853 GGAGTTATTTGGGTAAGGGGTAAAG 59.110 44.000 0.00 0.00 0.00 1.85
2213 4377 5.315377 TGGAGTTATTTGGGTAAGGGGTAAA 59.685 40.000 0.00 0.00 0.00 2.01
2286 4450 3.499918 GGTCAGTGTGGATGTTTCTCTTG 59.500 47.826 0.00 0.00 0.00 3.02
2308 4472 6.057533 TCCTCTGCAAATAGTATCACCATTG 58.942 40.000 0.00 0.00 0.00 2.82
2313 4477 7.710907 TGTTACATCCTCTGCAAATAGTATCAC 59.289 37.037 0.00 0.00 0.00 3.06
2331 4495 6.987386 ACCAGATGAGTATAGCTGTTACATC 58.013 40.000 0.00 6.33 34.73 3.06
2356 4521 7.147549 TGCAAATAGAGCTACTTTAGGTACCAT 60.148 37.037 15.94 1.66 36.51 3.55
2359 4524 7.490000 TCTGCAAATAGAGCTACTTTAGGTAC 58.510 38.462 0.00 0.00 36.51 3.34
2360 4525 7.655521 TCTGCAAATAGAGCTACTTTAGGTA 57.344 36.000 0.00 0.00 36.51 3.08
2370 4535 5.994250 TGGAGTTATTCTGCAAATAGAGCT 58.006 37.500 0.00 0.00 41.37 4.09
2407 4572 7.094508 TCTCTATGCTTCTCTGAACTTACTG 57.905 40.000 0.00 0.00 0.00 2.74
2430 4599 5.463724 GTCAATCCATACGATCCTGTCTTTC 59.536 44.000 0.00 0.00 0.00 2.62
2447 4616 4.072131 TGTTTGTAGGAGCAAGTCAATCC 58.928 43.478 0.00 0.00 0.00 3.01
2455 4624 4.947388 ACTTGAAACTGTTTGTAGGAGCAA 59.053 37.500 11.03 5.91 0.00 3.91
2463 4632 3.119137 GGCTGGAACTTGAAACTGTTTGT 60.119 43.478 11.03 0.00 0.00 2.83
2469 4638 3.584733 AGAAGGCTGGAACTTGAAACT 57.415 42.857 0.00 0.00 0.00 2.66
2471 4640 6.738453 GCAATTAAGAAGGCTGGAACTTGAAA 60.738 38.462 0.00 0.00 0.00 2.69
2481 4650 3.876320 GAGAGAGGCAATTAAGAAGGCTG 59.124 47.826 5.57 0.00 38.37 4.85
2505 4674 6.638610 TGCCGTTTTGATATGAATTTGGATT 58.361 32.000 0.00 0.00 0.00 3.01
2542 4711 5.277857 AGCAACTGTACTTTGACTGTAGT 57.722 39.130 10.84 0.00 31.92 2.73
2550 4719 2.869801 TGGTCGAAGCAACTGTACTTTG 59.130 45.455 0.00 0.00 0.00 2.77
2553 4722 1.687123 AGTGGTCGAAGCAACTGTACT 59.313 47.619 0.00 0.00 0.00 2.73
2561 4730 2.346803 GCTTAATCAGTGGTCGAAGCA 58.653 47.619 14.97 0.00 39.24 3.91
2593 4762 0.250234 GCTGCTAGGATGTGTGTGGA 59.750 55.000 0.00 0.00 0.00 4.02
2594 4763 0.251354 AGCTGCTAGGATGTGTGTGG 59.749 55.000 0.00 0.00 0.00 4.17
2595 4764 2.967599 TAGCTGCTAGGATGTGTGTG 57.032 50.000 5.02 0.00 0.00 3.82
2596 4765 4.494091 AATTAGCTGCTAGGATGTGTGT 57.506 40.909 9.62 0.00 0.00 3.72
2597 4766 6.051717 ACTTAATTAGCTGCTAGGATGTGTG 58.948 40.000 9.62 0.60 0.00 3.82
2598 4767 6.240549 ACTTAATTAGCTGCTAGGATGTGT 57.759 37.500 9.62 3.95 0.00 3.72
2599 4768 7.437748 AGTACTTAATTAGCTGCTAGGATGTG 58.562 38.462 9.62 3.38 0.00 3.21
2600 4769 7.604657 AGTACTTAATTAGCTGCTAGGATGT 57.395 36.000 9.62 9.49 0.00 3.06
2601 4770 8.798402 ACTAGTACTTAATTAGCTGCTAGGATG 58.202 37.037 9.62 4.64 31.26 3.51
2602 4771 8.943594 ACTAGTACTTAATTAGCTGCTAGGAT 57.056 34.615 9.62 0.00 31.26 3.24
2603 4772 9.504708 CTACTAGTACTTAATTAGCTGCTAGGA 57.495 37.037 9.62 0.00 31.26 2.94
2604 4773 9.504708 TCTACTAGTACTTAATTAGCTGCTAGG 57.495 37.037 9.62 2.58 31.26 3.02
2607 4776 9.411189 ACTTCTACTAGTACTTAATTAGCTGCT 57.589 33.333 7.57 7.57 0.00 4.24
2618 4787 9.145442 AGTTCTCCAAAACTTCTACTAGTACTT 57.855 33.333 0.00 0.00 36.02 2.24
2619 4788 8.709272 AGTTCTCCAAAACTTCTACTAGTACT 57.291 34.615 0.00 0.00 36.02 2.73
2636 4805 9.720769 CAGGTTAGTTCTTTATTTAGTTCTCCA 57.279 33.333 0.00 0.00 0.00 3.86
2637 4806 9.163899 CCAGGTTAGTTCTTTATTTAGTTCTCC 57.836 37.037 0.00 0.00 0.00 3.71
2638 4807 8.666573 GCCAGGTTAGTTCTTTATTTAGTTCTC 58.333 37.037 0.00 0.00 0.00 2.87
2639 4808 8.383947 AGCCAGGTTAGTTCTTTATTTAGTTCT 58.616 33.333 0.00 0.00 0.00 3.01
2640 4809 8.563123 AGCCAGGTTAGTTCTTTATTTAGTTC 57.437 34.615 0.00 0.00 0.00 3.01
2641 4810 9.445878 GTAGCCAGGTTAGTTCTTTATTTAGTT 57.554 33.333 0.00 0.00 0.00 2.24
2642 4811 7.763071 CGTAGCCAGGTTAGTTCTTTATTTAGT 59.237 37.037 0.00 0.00 0.00 2.24
2643 4812 7.224167 CCGTAGCCAGGTTAGTTCTTTATTTAG 59.776 40.741 0.00 0.00 0.00 1.85
2644 4813 7.043565 CCGTAGCCAGGTTAGTTCTTTATTTA 58.956 38.462 0.00 0.00 0.00 1.40
2645 4814 5.878669 CCGTAGCCAGGTTAGTTCTTTATTT 59.121 40.000 0.00 0.00 0.00 1.40
2646 4815 5.425630 CCGTAGCCAGGTTAGTTCTTTATT 58.574 41.667 0.00 0.00 0.00 1.40
2647 4816 4.682589 GCCGTAGCCAGGTTAGTTCTTTAT 60.683 45.833 0.00 0.00 0.00 1.40
2648 4817 3.368739 GCCGTAGCCAGGTTAGTTCTTTA 60.369 47.826 0.00 0.00 0.00 1.85
2649 4818 2.614734 GCCGTAGCCAGGTTAGTTCTTT 60.615 50.000 0.00 0.00 0.00 2.52
2650 4819 1.066358 GCCGTAGCCAGGTTAGTTCTT 60.066 52.381 0.00 0.00 0.00 2.52
2651 4820 0.535797 GCCGTAGCCAGGTTAGTTCT 59.464 55.000 0.00 0.00 0.00 3.01
2652 4821 0.535797 AGCCGTAGCCAGGTTAGTTC 59.464 55.000 0.00 0.00 41.25 3.01
2653 4822 0.535797 GAGCCGTAGCCAGGTTAGTT 59.464 55.000 0.00 0.00 41.25 2.24
2654 4823 0.324460 AGAGCCGTAGCCAGGTTAGT 60.324 55.000 0.00 0.00 41.25 2.24
2655 4824 1.337387 GTAGAGCCGTAGCCAGGTTAG 59.663 57.143 0.00 0.00 41.25 2.34
2656 4825 1.064166 AGTAGAGCCGTAGCCAGGTTA 60.064 52.381 0.00 0.00 41.25 2.85
2657 4826 0.324460 AGTAGAGCCGTAGCCAGGTT 60.324 55.000 0.00 0.00 41.25 3.50
2658 4827 0.324460 AAGTAGAGCCGTAGCCAGGT 60.324 55.000 0.00 0.00 41.25 4.00
2659 4828 0.103208 CAAGTAGAGCCGTAGCCAGG 59.897 60.000 0.00 0.00 41.25 4.45
2660 4829 0.528684 GCAAGTAGAGCCGTAGCCAG 60.529 60.000 0.00 0.00 41.25 4.85
2661 4830 0.970937 AGCAAGTAGAGCCGTAGCCA 60.971 55.000 0.00 0.00 41.25 4.75
2662 4831 0.175989 AAGCAAGTAGAGCCGTAGCC 59.824 55.000 0.00 0.00 41.25 3.93
2663 4832 1.135083 TGAAGCAAGTAGAGCCGTAGC 60.135 52.381 0.00 0.00 40.32 3.58
2664 4833 2.941453 TGAAGCAAGTAGAGCCGTAG 57.059 50.000 0.00 0.00 0.00 3.51
2665 4834 4.204799 TCTATGAAGCAAGTAGAGCCGTA 58.795 43.478 0.00 0.00 0.00 4.02
2666 4835 3.024547 TCTATGAAGCAAGTAGAGCCGT 58.975 45.455 0.00 0.00 0.00 5.68
2667 4836 3.316588 TCTCTATGAAGCAAGTAGAGCCG 59.683 47.826 9.34 0.00 40.64 5.52
2668 4837 4.927978 TCTCTATGAAGCAAGTAGAGCC 57.072 45.455 9.34 0.00 40.64 4.70
2669 4838 6.475402 GTCTTTCTCTATGAAGCAAGTAGAGC 59.525 42.308 9.34 0.00 40.64 4.09
2670 4839 7.542890 TGTCTTTCTCTATGAAGCAAGTAGAG 58.457 38.462 8.36 8.36 41.66 2.43
2671 4840 7.468141 TGTCTTTCTCTATGAAGCAAGTAGA 57.532 36.000 0.00 0.00 35.89 2.59
2672 4841 7.978414 TCATGTCTTTCTCTATGAAGCAAGTAG 59.022 37.037 0.00 0.00 35.89 2.57
2673 4842 7.840931 TCATGTCTTTCTCTATGAAGCAAGTA 58.159 34.615 0.00 0.00 35.89 2.24
2674 4843 6.705302 TCATGTCTTTCTCTATGAAGCAAGT 58.295 36.000 0.00 0.00 35.89 3.16
2675 4844 7.494952 TGATCATGTCTTTCTCTATGAAGCAAG 59.505 37.037 0.00 0.00 35.89 4.01
2676 4845 7.333323 TGATCATGTCTTTCTCTATGAAGCAA 58.667 34.615 0.00 0.00 35.89 3.91
2677 4846 6.881570 TGATCATGTCTTTCTCTATGAAGCA 58.118 36.000 0.00 0.00 35.89 3.91
2678 4847 7.966246 ATGATCATGTCTTTCTCTATGAAGC 57.034 36.000 7.59 0.00 35.89 3.86
2679 4848 9.978044 TGTATGATCATGTCTTTCTCTATGAAG 57.022 33.333 18.72 0.00 35.89 3.02
2680 4849 9.978044 CTGTATGATCATGTCTTTCTCTATGAA 57.022 33.333 18.72 0.00 33.71 2.57
2681 4850 8.087136 GCTGTATGATCATGTCTTTCTCTATGA 58.913 37.037 18.72 0.00 34.42 2.15
2682 4851 8.089597 AGCTGTATGATCATGTCTTTCTCTATG 58.910 37.037 18.72 0.00 0.00 2.23
2683 4852 8.192743 AGCTGTATGATCATGTCTTTCTCTAT 57.807 34.615 18.72 0.00 0.00 1.98
2684 4853 7.594351 AGCTGTATGATCATGTCTTTCTCTA 57.406 36.000 18.72 0.00 0.00 2.43
2685 4854 6.482898 AGCTGTATGATCATGTCTTTCTCT 57.517 37.500 18.72 2.11 0.00 3.10
2686 4855 6.760298 TCAAGCTGTATGATCATGTCTTTCTC 59.240 38.462 18.72 0.00 0.00 2.87
2687 4856 6.538021 GTCAAGCTGTATGATCATGTCTTTCT 59.462 38.462 18.72 5.06 0.00 2.52
2688 4857 6.538021 AGTCAAGCTGTATGATCATGTCTTTC 59.462 38.462 18.72 10.09 0.00 2.62
2689 4858 6.413052 AGTCAAGCTGTATGATCATGTCTTT 58.587 36.000 18.72 3.83 0.00 2.52
2690 4859 5.987098 AGTCAAGCTGTATGATCATGTCTT 58.013 37.500 18.72 11.85 0.00 3.01
2691 4860 5.611128 AGTCAAGCTGTATGATCATGTCT 57.389 39.130 18.72 6.72 0.00 3.41
2692 4861 6.983307 AGTAAGTCAAGCTGTATGATCATGTC 59.017 38.462 18.72 11.39 0.00 3.06
2693 4862 6.882656 AGTAAGTCAAGCTGTATGATCATGT 58.117 36.000 18.72 0.00 0.00 3.21
2694 4863 6.423302 GGAGTAAGTCAAGCTGTATGATCATG 59.577 42.308 18.72 2.74 0.00 3.07
2695 4864 6.326064 AGGAGTAAGTCAAGCTGTATGATCAT 59.674 38.462 13.81 13.81 0.00 2.45
2696 4865 5.658634 AGGAGTAAGTCAAGCTGTATGATCA 59.341 40.000 0.00 0.00 0.00 2.92
2697 4866 5.982516 CAGGAGTAAGTCAAGCTGTATGATC 59.017 44.000 0.00 0.00 0.00 2.92
2698 4867 5.683509 GCAGGAGTAAGTCAAGCTGTATGAT 60.684 44.000 0.00 0.00 0.00 2.45
2699 4868 4.382040 GCAGGAGTAAGTCAAGCTGTATGA 60.382 45.833 0.00 0.00 0.00 2.15
2700 4869 3.868077 GCAGGAGTAAGTCAAGCTGTATG 59.132 47.826 0.00 0.00 0.00 2.39
2701 4870 3.515502 TGCAGGAGTAAGTCAAGCTGTAT 59.484 43.478 0.00 0.00 0.00 2.29
2702 4871 2.897326 TGCAGGAGTAAGTCAAGCTGTA 59.103 45.455 0.00 0.00 0.00 2.74
2703 4872 1.694150 TGCAGGAGTAAGTCAAGCTGT 59.306 47.619 0.00 0.00 0.00 4.40
2704 4873 2.462456 TGCAGGAGTAAGTCAAGCTG 57.538 50.000 0.00 0.00 0.00 4.24
2705 4874 2.104792 TGTTGCAGGAGTAAGTCAAGCT 59.895 45.455 0.00 0.00 0.00 3.74
2706 4875 2.494059 TGTTGCAGGAGTAAGTCAAGC 58.506 47.619 0.00 0.00 0.00 4.01
2707 4876 5.695851 AAATGTTGCAGGAGTAAGTCAAG 57.304 39.130 0.00 0.00 0.00 3.02
2708 4877 5.592282 TCAAAATGTTGCAGGAGTAAGTCAA 59.408 36.000 0.00 0.00 34.50 3.18
2709 4878 5.129634 TCAAAATGTTGCAGGAGTAAGTCA 58.870 37.500 0.00 0.00 34.50 3.41
2710 4879 5.689383 TCAAAATGTTGCAGGAGTAAGTC 57.311 39.130 0.00 0.00 34.50 3.01
2711 4880 5.536161 ACATCAAAATGTTGCAGGAGTAAGT 59.464 36.000 0.00 0.00 43.74 2.24
2712 4881 6.017400 ACATCAAAATGTTGCAGGAGTAAG 57.983 37.500 0.00 0.00 43.74 2.34
2725 4894 6.128849 GGATTGGAACGTGAAACATCAAAATG 60.129 38.462 0.00 0.00 35.74 2.32
2726 4895 5.925969 GGATTGGAACGTGAAACATCAAAAT 59.074 36.000 0.00 0.00 35.74 1.82
2727 4896 5.068460 AGGATTGGAACGTGAAACATCAAAA 59.932 36.000 0.00 0.00 35.74 2.44
2728 4897 4.582656 AGGATTGGAACGTGAAACATCAAA 59.417 37.500 0.00 0.00 35.74 2.69
2729 4898 4.141287 AGGATTGGAACGTGAAACATCAA 58.859 39.130 0.00 0.00 35.74 2.57
2730 4899 3.750371 AGGATTGGAACGTGAAACATCA 58.250 40.909 0.00 0.00 35.74 3.07
2731 4900 4.766404 AAGGATTGGAACGTGAAACATC 57.234 40.909 0.00 0.00 35.74 3.06
2732 4901 5.068460 TCAAAAGGATTGGAACGTGAAACAT 59.932 36.000 0.00 0.00 35.74 2.71
2733 4902 4.399618 TCAAAAGGATTGGAACGTGAAACA 59.600 37.500 0.00 0.00 35.74 2.83
2734 4903 4.927422 TCAAAAGGATTGGAACGTGAAAC 58.073 39.130 0.00 0.00 0.00 2.78
2735 4904 5.782893 ATCAAAAGGATTGGAACGTGAAA 57.217 34.783 0.00 0.00 29.81 2.69
2736 4905 5.782893 AATCAAAAGGATTGGAACGTGAA 57.217 34.783 0.00 0.00 44.51 3.18
2747 4916 2.358615 GGGGAGAGGCAATCAAAAGGAT 60.359 50.000 0.00 0.00 38.05 3.24
2748 4917 1.005924 GGGGAGAGGCAATCAAAAGGA 59.994 52.381 0.00 0.00 0.00 3.36
2749 4918 1.272648 TGGGGAGAGGCAATCAAAAGG 60.273 52.381 0.00 0.00 0.00 3.11
2750 4919 2.220653 TGGGGAGAGGCAATCAAAAG 57.779 50.000 0.00 0.00 0.00 2.27
2751 4920 2.247358 GTTGGGGAGAGGCAATCAAAA 58.753 47.619 0.00 0.00 0.00 2.44
2752 4921 1.549950 GGTTGGGGAGAGGCAATCAAA 60.550 52.381 0.00 0.00 0.00 2.69
2753 4922 0.039618 GGTTGGGGAGAGGCAATCAA 59.960 55.000 0.00 0.00 0.00 2.57
2754 4923 1.691219 GGTTGGGGAGAGGCAATCA 59.309 57.895 0.00 0.00 0.00 2.57
2755 4924 1.076705 GGGTTGGGGAGAGGCAATC 60.077 63.158 0.00 0.00 0.00 2.67
2756 4925 1.856873 TGGGTTGGGGAGAGGCAAT 60.857 57.895 0.00 0.00 0.00 3.56
2757 4926 2.451493 TGGGTTGGGGAGAGGCAA 60.451 61.111 0.00 0.00 0.00 4.52
2758 4927 2.788230 ATCTGGGTTGGGGAGAGGCA 62.788 60.000 0.00 0.00 0.00 4.75
2759 4928 1.575447 AATCTGGGTTGGGGAGAGGC 61.575 60.000 0.00 0.00 0.00 4.70
2760 4929 1.002857 AAATCTGGGTTGGGGAGAGG 58.997 55.000 0.00 0.00 0.00 3.69
2761 4930 1.635487 TGAAATCTGGGTTGGGGAGAG 59.365 52.381 0.00 0.00 0.00 3.20
2762 4931 1.753903 TGAAATCTGGGTTGGGGAGA 58.246 50.000 0.00 0.00 0.00 3.71
2763 4932 2.834638 ATGAAATCTGGGTTGGGGAG 57.165 50.000 0.00 0.00 0.00 4.30
2764 4933 3.335183 TGTTATGAAATCTGGGTTGGGGA 59.665 43.478 0.00 0.00 0.00 4.81
2765 4934 3.707316 TGTTATGAAATCTGGGTTGGGG 58.293 45.455 0.00 0.00 0.00 4.96
2766 4935 5.736951 TTTGTTATGAAATCTGGGTTGGG 57.263 39.130 0.00 0.00 0.00 4.12
2767 4936 9.150348 GTATTTTTGTTATGAAATCTGGGTTGG 57.850 33.333 0.00 0.00 0.00 3.77
2768 4937 9.703892 TGTATTTTTGTTATGAAATCTGGGTTG 57.296 29.630 0.00 0.00 0.00 3.77
2814 4983 1.405821 CTGTGGTCGGAGCTACCTTAG 59.594 57.143 8.82 0.87 37.91 2.18
2815 4984 1.471119 CTGTGGTCGGAGCTACCTTA 58.529 55.000 8.82 0.00 37.91 2.69
2816 4985 1.889530 GCTGTGGTCGGAGCTACCTT 61.890 60.000 8.82 0.00 37.91 3.50
2817 4986 2.352032 GCTGTGGTCGGAGCTACCT 61.352 63.158 8.82 0.00 37.91 3.08
2818 4987 2.184579 GCTGTGGTCGGAGCTACC 59.815 66.667 8.82 0.00 37.53 3.18
2819 4988 1.139947 GAGCTGTGGTCGGAGCTAC 59.860 63.158 8.82 5.90 45.72 3.58
2820 4989 1.304134 TGAGCTGTGGTCGGAGCTA 60.304 57.895 8.82 0.00 45.72 3.32
2822 4991 2.125753 CTGAGCTGTGGTCGGAGC 60.126 66.667 0.00 0.00 38.55 4.70
2823 4992 2.575993 CCTGAGCTGTGGTCGGAG 59.424 66.667 0.00 0.00 38.55 4.63
2824 4993 2.997315 CCCTGAGCTGTGGTCGGA 60.997 66.667 0.00 0.00 38.55 4.55
2825 4994 4.767255 GCCCTGAGCTGTGGTCGG 62.767 72.222 0.00 0.00 38.99 4.79
2826 4995 3.320879 ATGCCCTGAGCTGTGGTCG 62.321 63.158 0.00 0.00 44.23 4.79
2827 4996 1.451028 GATGCCCTGAGCTGTGGTC 60.451 63.158 0.00 0.00 44.23 4.02
2828 4997 1.908340 GAGATGCCCTGAGCTGTGGT 61.908 60.000 0.00 0.00 44.23 4.16
2829 4998 1.153208 GAGATGCCCTGAGCTGTGG 60.153 63.158 0.00 0.00 44.23 4.17
2830 4999 1.153208 GGAGATGCCCTGAGCTGTG 60.153 63.158 0.00 0.00 44.23 3.66
2831 5000 1.614525 TGGAGATGCCCTGAGCTGT 60.615 57.895 0.00 0.00 44.23 4.40
2832 5001 1.146485 CTGGAGATGCCCTGAGCTG 59.854 63.158 0.00 0.00 44.23 4.24
2833 5002 2.744243 GCTGGAGATGCCCTGAGCT 61.744 63.158 0.00 0.00 44.23 4.09
2834 5003 2.203181 GCTGGAGATGCCCTGAGC 60.203 66.667 0.00 0.00 44.14 4.26
2835 5004 2.509916 GGCTGGAGATGCCCTGAG 59.490 66.667 0.00 0.00 44.32 3.35
2842 5011 4.899239 GGGACGCGGCTGGAGATG 62.899 72.222 13.91 0.00 0.00 2.90
2854 5023 4.410400 GAGGGCCTGTTGGGGACG 62.410 72.222 12.95 0.00 34.56 4.79
2855 5024 4.048470 GGAGGGCCTGTTGGGGAC 62.048 72.222 12.95 0.00 35.12 4.46
2859 5028 3.589542 TTGGGGAGGGCCTGTTGG 61.590 66.667 12.95 0.00 0.00 3.77
2860 5029 2.036256 CTTGGGGAGGGCCTGTTG 59.964 66.667 12.95 0.00 0.00 3.33
2861 5030 3.984732 GCTTGGGGAGGGCCTGTT 61.985 66.667 12.95 0.00 0.00 3.16
2865 5034 3.662117 AAATCGCTTGGGGAGGGCC 62.662 63.158 0.00 0.00 38.16 5.80
2866 5035 1.682344 AAAATCGCTTGGGGAGGGC 60.682 57.895 0.00 0.00 38.16 5.19
2867 5036 1.948721 GCAAAATCGCTTGGGGAGGG 61.949 60.000 0.00 0.00 39.55 4.30
2868 5037 1.512694 GCAAAATCGCTTGGGGAGG 59.487 57.895 0.00 0.00 0.00 4.30
2869 5038 1.512694 GGCAAAATCGCTTGGGGAG 59.487 57.895 0.00 0.00 0.00 4.30
2870 5039 2.339556 CGGCAAAATCGCTTGGGGA 61.340 57.895 0.00 0.00 0.00 4.81
2871 5040 2.181525 CGGCAAAATCGCTTGGGG 59.818 61.111 0.00 0.00 0.00 4.96
2901 5070 2.983592 CGCGACTGGGGCCTTTTT 60.984 61.111 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.