Multiple sequence alignment - TraesCS5B01G471000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G471000 chr5B 100.000 3461 0 0 1 3461 644614209 644610749 0.000000e+00 6392.0
1 TraesCS5B01G471000 chr5B 87.467 1125 135 2 1325 2449 644844318 644843200 0.000000e+00 1291.0
2 TraesCS5B01G471000 chr5B 86.009 436 34 18 894 1307 644844733 644844303 3.170000e-120 442.0
3 TraesCS5B01G471000 chr5B 80.418 383 45 19 767 1137 644838740 644838376 7.370000e-67 265.0
4 TraesCS5B01G471000 chr5B 89.922 129 13 0 2665 2793 82156826 82156698 2.140000e-37 167.0
5 TraesCS5B01G471000 chr5B 89.011 91 8 1 3371 3461 482414307 482414219 1.020000e-20 111.0
6 TraesCS5B01G471000 chr5A 91.064 2059 127 29 584 2609 641592136 641590102 0.000000e+00 2730.0
7 TraesCS5B01G471000 chr5A 86.533 698 89 3 1371 2067 641666734 641666041 0.000000e+00 763.0
8 TraesCS5B01G471000 chr5A 91.667 384 29 1 2063 2446 641641808 641641428 2.370000e-146 529.0
9 TraesCS5B01G471000 chr5A 87.440 207 20 3 895 1095 641593960 641593754 2.080000e-57 233.0
10 TraesCS5B01G471000 chr5A 92.683 41 2 1 261 300 641592307 641592347 1.340000e-04 58.4
11 TraesCS5B01G471000 chr5D 92.418 1886 115 13 584 2451 513663957 513662082 0.000000e+00 2665.0
12 TraesCS5B01G471000 chr5D 84.968 938 107 18 1016 1949 513722244 513721337 0.000000e+00 920.0
13 TraesCS5B01G471000 chr5D 86.561 506 61 3 1945 2449 513714026 513713527 5.050000e-153 551.0
14 TraesCS5B01G471000 chr5D 83.451 568 57 23 2815 3373 545913504 545914043 8.630000e-136 494.0
15 TraesCS5B01G471000 chr5D 81.647 425 41 23 719 1137 513694989 513694596 5.570000e-83 318.0
16 TraesCS5B01G471000 chr5D 91.716 169 12 2 246 412 513663974 513663806 2.080000e-57 233.0
17 TraesCS5B01G471000 chr5D 85.849 212 7 4 2442 2630 513660444 513660233 1.630000e-48 204.0
18 TraesCS5B01G471000 chr5D 75.325 462 84 24 2925 3370 498931095 498931542 9.800000e-46 195.0
19 TraesCS5B01G471000 chr5D 87.179 156 10 8 3 157 513664981 513664835 5.940000e-38 169.0
20 TraesCS5B01G471000 chr5D 88.421 95 7 2 3371 3461 445304171 445304077 1.020000e-20 111.0
21 TraesCS5B01G471000 chr5D 89.011 91 7 3 3372 3461 462037606 462037694 3.650000e-20 110.0
22 TraesCS5B01G471000 chr5D 85.227 88 13 0 2665 2752 517960760 517960673 1.320000e-14 91.6
23 TraesCS5B01G471000 chr2B 85.263 570 62 16 2810 3370 23472173 23472729 5.010000e-158 568.0
24 TraesCS5B01G471000 chr2B 74.310 1269 240 63 1166 2397 6178862 6180081 3.150000e-125 459.0
25 TraesCS5B01G471000 chr2B 91.034 145 12 1 2665 2808 23471906 23472050 9.800000e-46 195.0
26 TraesCS5B01G471000 chr2B 86.585 82 11 0 2665 2746 796085092 796085173 1.320000e-14 91.6
27 TraesCS5B01G471000 chr2A 85.152 559 53 19 2814 3364 76371553 76371017 2.350000e-151 545.0
28 TraesCS5B01G471000 chr2A 76.953 781 154 21 1627 2397 3817126 3817890 4.130000e-114 422.0
29 TraesCS5B01G471000 chr2A 91.667 144 12 0 2665 2808 76371823 76371680 2.110000e-47 200.0
30 TraesCS5B01G471000 chr2D 85.122 531 55 18 2864 3370 646118571 646119101 3.960000e-144 521.0
31 TraesCS5B01G471000 chr2D 74.602 1256 256 52 1166 2397 5267410 5268626 8.630000e-136 494.0
32 TraesCS5B01G471000 chr2D 79.609 358 51 18 3027 3370 601985962 601986311 1.610000e-58 237.0
33 TraesCS5B01G471000 chr2D 98.485 66 1 0 2655 2720 498324762 498324827 2.180000e-22 117.0
34 TraesCS5B01G471000 chr2D 86.275 51 6 1 11 61 29307781 29307830 2.000000e-03 54.7
35 TraesCS5B01G471000 chr4A 83.363 553 51 27 2831 3373 623782320 623781799 1.120000e-129 473.0
36 TraesCS5B01G471000 chr4A 83.183 553 52 27 2831 3373 623697906 623697385 5.230000e-128 468.0
37 TraesCS5B01G471000 chr4A 95.238 42 0 2 10 50 665862626 665862586 8.020000e-07 65.8
38 TraesCS5B01G471000 chr1A 83.032 554 52 27 2831 3373 569786262 569785740 6.770000e-127 464.0
39 TraesCS5B01G471000 chr1A 89.362 94 4 6 3371 3461 545858781 545858691 2.820000e-21 113.0
40 TraesCS5B01G471000 chr1A 84.615 104 16 0 2665 2768 590863530 590863633 1.700000e-18 104.0
41 TraesCS5B01G471000 chr4B 78.647 473 69 25 2904 3370 492226224 492225778 5.650000e-73 285.0
42 TraesCS5B01G471000 chr1D 75.368 544 105 26 1731 2264 436086521 436085997 5.770000e-58 235.0
43 TraesCS5B01G471000 chr7D 90.426 94 4 4 3371 3461 47714552 47714461 6.070000e-23 119.0
44 TraesCS5B01G471000 chr7D 92.683 41 3 0 10 50 99963756 99963796 3.730000e-05 60.2
45 TraesCS5B01G471000 chr3A 89.247 93 8 2 3371 3461 724145197 724145105 7.850000e-22 115.0
46 TraesCS5B01G471000 chr3A 89.130 92 9 1 3371 3461 724144749 724144658 2.820000e-21 113.0
47 TraesCS5B01G471000 chr3A 89.130 92 5 3 3371 3459 10800867 10800778 3.650000e-20 110.0
48 TraesCS5B01G471000 chr3A 87.629 97 7 4 3368 3461 162700247 162700341 1.310000e-19 108.0
49 TraesCS5B01G471000 chr3A 85.714 56 5 3 25 78 734516325 734516271 4.830000e-04 56.5
50 TraesCS5B01G471000 chr6A 87.805 82 10 0 2665 2746 677929 678010 2.840000e-16 97.1
51 TraesCS5B01G471000 chr6A 91.071 56 3 1 259 312 564292742 564292797 1.330000e-09 75.0
52 TraesCS5B01G471000 chr6A 83.099 71 9 3 10 78 601964851 601964782 1.040000e-05 62.1
53 TraesCS5B01G471000 chrUn 86.585 82 11 0 2665 2746 34174766 34174847 1.320000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G471000 chr5B 644610749 644614209 3460 True 6392.00 6392 100.0000 1 3461 1 chr5B.!!$R3 3460
1 TraesCS5B01G471000 chr5B 644843200 644844733 1533 True 866.50 1291 86.7380 894 2449 2 chr5B.!!$R5 1555
2 TraesCS5B01G471000 chr5A 641590102 641593960 3858 True 1481.50 2730 89.2520 584 2609 2 chr5A.!!$R3 2025
3 TraesCS5B01G471000 chr5A 641666041 641666734 693 True 763.00 763 86.5330 1371 2067 1 chr5A.!!$R2 696
4 TraesCS5B01G471000 chr5D 513721337 513722244 907 True 920.00 920 84.9680 1016 1949 1 chr5D.!!$R4 933
5 TraesCS5B01G471000 chr5D 513660233 513664981 4748 True 817.75 2665 89.2905 3 2630 4 chr5D.!!$R6 2627
6 TraesCS5B01G471000 chr5D 545913504 545914043 539 False 494.00 494 83.4510 2815 3373 1 chr5D.!!$F3 558
7 TraesCS5B01G471000 chr2B 6178862 6180081 1219 False 459.00 459 74.3100 1166 2397 1 chr2B.!!$F1 1231
8 TraesCS5B01G471000 chr2B 23471906 23472729 823 False 381.50 568 88.1485 2665 3370 2 chr2B.!!$F3 705
9 TraesCS5B01G471000 chr2A 3817126 3817890 764 False 422.00 422 76.9530 1627 2397 1 chr2A.!!$F1 770
10 TraesCS5B01G471000 chr2A 76371017 76371823 806 True 372.50 545 88.4095 2665 3364 2 chr2A.!!$R1 699
11 TraesCS5B01G471000 chr2D 646118571 646119101 530 False 521.00 521 85.1220 2864 3370 1 chr2D.!!$F5 506
12 TraesCS5B01G471000 chr2D 5267410 5268626 1216 False 494.00 494 74.6020 1166 2397 1 chr2D.!!$F1 1231
13 TraesCS5B01G471000 chr4A 623781799 623782320 521 True 473.00 473 83.3630 2831 3373 1 chr4A.!!$R2 542
14 TraesCS5B01G471000 chr4A 623697385 623697906 521 True 468.00 468 83.1830 2831 3373 1 chr4A.!!$R1 542
15 TraesCS5B01G471000 chr1A 569785740 569786262 522 True 464.00 464 83.0320 2831 3373 1 chr1A.!!$R2 542
16 TraesCS5B01G471000 chr1D 436085997 436086521 524 True 235.00 235 75.3680 1731 2264 1 chr1D.!!$R1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.107945 GAGCCTCTGCAGTAGGGTTG 60.108 60.0 26.83 9.31 44.72 3.77 F
486 1284 0.179134 AGCGCTGACGTGGATAAGTC 60.179 55.0 10.39 0.00 42.83 3.01 F
487 1285 0.179134 GCGCTGACGTGGATAAGTCT 60.179 55.0 0.00 0.00 42.83 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 2991 0.468400 GGAGTACAGAGGCCGGAGAT 60.468 60.0 5.05 0.00 0.00 2.75 R
2447 5429 0.179187 CTTCGATCAGCTGTCGTCGT 60.179 55.0 26.56 6.45 39.91 4.34 R
2548 5545 2.033151 GTCTGTAAAAGTCCGTGTGTGC 60.033 50.0 0.00 0.00 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.778143 GCCGAGGTCAATGGCGGT 62.778 66.667 0.00 0.00 45.22 5.68
32 33 2.897207 CCGAGGTCAATGGCGGTA 59.103 61.111 0.00 0.00 38.99 4.02
41 42 3.396560 GTCAATGGCGGTAGGGTATAAC 58.603 50.000 0.00 0.00 0.00 1.89
62 63 1.152440 CCTACCATCGGGAGCCTCT 60.152 63.158 0.00 0.00 38.05 3.69
65 66 2.871795 TACCATCGGGAGCCTCTGCA 62.872 60.000 0.00 0.00 37.55 4.41
69 70 1.112315 ATCGGGAGCCTCTGCAGTAG 61.112 60.000 14.67 9.71 41.13 2.57
70 71 2.790791 CGGGAGCCTCTGCAGTAGG 61.791 68.421 21.31 21.31 41.13 3.18
71 72 2.439104 GGGAGCCTCTGCAGTAGGG 61.439 68.421 24.62 20.10 41.13 3.53
74 75 0.107945 GAGCCTCTGCAGTAGGGTTG 60.108 60.000 26.83 9.31 44.72 3.77
75 76 0.545309 AGCCTCTGCAGTAGGGTTGA 60.545 55.000 23.07 0.31 42.10 3.18
76 77 0.543749 GCCTCTGCAGTAGGGTTGAT 59.456 55.000 24.62 0.00 37.47 2.57
85 86 0.464554 GTAGGGTTGATGGCAGAGGC 60.465 60.000 0.00 0.00 40.13 4.70
131 132 4.088056 TGAATAAGTTTTCCACCACCGA 57.912 40.909 0.00 0.00 0.00 4.69
147 148 1.814169 CGAGGGCCTTTTCTACCGC 60.814 63.158 7.89 0.00 0.00 5.68
170 171 1.303806 GCCCCCGCCTTTTCTAACA 60.304 57.895 0.00 0.00 0.00 2.41
171 172 0.683179 GCCCCCGCCTTTTCTAACAT 60.683 55.000 0.00 0.00 0.00 2.71
173 174 1.340600 CCCCCGCCTTTTCTAACATCA 60.341 52.381 0.00 0.00 0.00 3.07
174 175 2.017049 CCCCGCCTTTTCTAACATCAG 58.983 52.381 0.00 0.00 0.00 2.90
175 176 2.017049 CCCGCCTTTTCTAACATCAGG 58.983 52.381 0.00 0.00 0.00 3.86
177 178 1.401905 CGCCTTTTCTAACATCAGGGC 59.598 52.381 0.00 0.00 35.53 5.19
178 179 1.751351 GCCTTTTCTAACATCAGGGCC 59.249 52.381 0.00 0.00 33.07 5.80
179 180 2.379005 CCTTTTCTAACATCAGGGCCC 58.621 52.381 16.46 16.46 0.00 5.80
180 181 2.379005 CTTTTCTAACATCAGGGCCCC 58.621 52.381 21.43 0.00 0.00 5.80
183 184 1.146263 CTAACATCAGGGCCCCGAC 59.854 63.158 21.43 0.00 0.00 4.79
215 216 6.841781 ATTATACCTTACCACCATCAACCT 57.158 37.500 0.00 0.00 0.00 3.50
240 241 4.396166 GGTGGTAGAAAACATGGTCAGATG 59.604 45.833 0.00 0.00 0.00 2.90
257 1053 7.177216 TGGTCAGATGCTGAAATTTTATCAAGT 59.823 33.333 0.00 0.00 42.46 3.16
269 1065 7.872113 AATTTTATCAAGTCAGGGTCAGATC 57.128 36.000 0.00 0.00 0.00 2.75
290 1086 8.133627 CAGATCTGACTCAACTTTCACAAAAAT 58.866 33.333 18.34 0.00 0.00 1.82
291 1087 8.689972 AGATCTGACTCAACTTTCACAAAAATT 58.310 29.630 0.00 0.00 0.00 1.82
292 1088 8.638685 ATCTGACTCAACTTTCACAAAAATTG 57.361 30.769 0.00 0.00 33.89 2.32
293 1089 7.825681 TCTGACTCAACTTTCACAAAAATTGA 58.174 30.769 0.00 0.00 38.04 2.57
341 1138 1.090052 GGCTTCCAGCTTCGCGTAAT 61.090 55.000 5.77 0.00 41.99 1.89
342 1139 0.301987 GCTTCCAGCTTCGCGTAATC 59.698 55.000 5.77 0.00 38.45 1.75
343 1140 1.640428 CTTCCAGCTTCGCGTAATCA 58.360 50.000 5.77 0.00 0.00 2.57
344 1141 1.324736 CTTCCAGCTTCGCGTAATCAC 59.675 52.381 5.77 0.00 0.00 3.06
372 1170 6.418101 TCCTTGATTGAATTAACCTCTCCTG 58.582 40.000 0.00 0.00 0.00 3.86
373 1171 6.012508 TCCTTGATTGAATTAACCTCTCCTGT 60.013 38.462 0.00 0.00 0.00 4.00
390 1188 0.758734 TGTCCTCCACCTCAACTGTG 59.241 55.000 0.00 0.00 0.00 3.66
391 1189 0.603975 GTCCTCCACCTCAACTGTGC 60.604 60.000 0.00 0.00 32.30 4.57
392 1190 1.302832 CCTCCACCTCAACTGTGCC 60.303 63.158 0.00 0.00 32.30 5.01
393 1191 1.757306 CTCCACCTCAACTGTGCCT 59.243 57.895 0.00 0.00 32.30 4.75
394 1192 0.604780 CTCCACCTCAACTGTGCCTG 60.605 60.000 0.00 0.00 32.30 4.85
395 1193 2.263741 CCACCTCAACTGTGCCTGC 61.264 63.158 0.00 0.00 32.30 4.85
396 1194 1.526686 CACCTCAACTGTGCCTGCA 60.527 57.895 0.00 0.00 0.00 4.41
397 1195 0.892358 CACCTCAACTGTGCCTGCAT 60.892 55.000 0.00 0.00 0.00 3.96
398 1196 0.607489 ACCTCAACTGTGCCTGCATC 60.607 55.000 0.00 0.00 0.00 3.91
399 1197 1.310933 CCTCAACTGTGCCTGCATCC 61.311 60.000 0.00 0.00 0.00 3.51
400 1198 0.322277 CTCAACTGTGCCTGCATCCT 60.322 55.000 0.00 0.00 0.00 3.24
401 1199 0.321919 TCAACTGTGCCTGCATCCTC 60.322 55.000 0.00 0.00 0.00 3.71
402 1200 1.001641 AACTGTGCCTGCATCCTCC 60.002 57.895 0.00 0.00 0.00 4.30
403 1201 1.782201 AACTGTGCCTGCATCCTCCA 61.782 55.000 0.00 0.00 0.00 3.86
404 1202 1.748122 CTGTGCCTGCATCCTCCAC 60.748 63.158 0.00 0.00 0.00 4.02
405 1203 2.439156 GTGCCTGCATCCTCCACC 60.439 66.667 0.00 0.00 0.00 4.61
406 1204 2.611800 TGCCTGCATCCTCCACCT 60.612 61.111 0.00 0.00 0.00 4.00
407 1205 2.191641 GCCTGCATCCTCCACCTC 59.808 66.667 0.00 0.00 0.00 3.85
408 1206 2.503061 CCTGCATCCTCCACCTCG 59.497 66.667 0.00 0.00 0.00 4.63
409 1207 2.503061 CTGCATCCTCCACCTCGG 59.497 66.667 0.00 0.00 0.00 4.63
410 1208 2.038813 TGCATCCTCCACCTCGGA 59.961 61.111 0.00 0.00 43.61 4.55
423 1221 2.036731 TCGGAGGTCGATGGTGGT 59.963 61.111 0.00 0.00 43.74 4.16
424 1222 1.303948 TCGGAGGTCGATGGTGGTA 59.696 57.895 0.00 0.00 43.74 3.25
425 1223 0.750546 TCGGAGGTCGATGGTGGTAG 60.751 60.000 0.00 0.00 43.74 3.18
426 1224 1.735376 CGGAGGTCGATGGTGGTAGG 61.735 65.000 0.00 0.00 42.43 3.18
427 1225 1.400530 GGAGGTCGATGGTGGTAGGG 61.401 65.000 0.00 0.00 0.00 3.53
428 1226 0.686769 GAGGTCGATGGTGGTAGGGT 60.687 60.000 0.00 0.00 0.00 4.34
429 1227 0.632835 AGGTCGATGGTGGTAGGGTA 59.367 55.000 0.00 0.00 0.00 3.69
430 1228 1.038280 GGTCGATGGTGGTAGGGTAG 58.962 60.000 0.00 0.00 0.00 3.18
431 1229 0.388294 GTCGATGGTGGTAGGGTAGC 59.612 60.000 0.00 0.00 0.00 3.58
432 1230 1.105167 TCGATGGTGGTAGGGTAGCG 61.105 60.000 0.00 0.00 0.00 4.26
433 1231 1.746517 GATGGTGGTAGGGTAGCGG 59.253 63.158 0.00 0.00 0.00 5.52
434 1232 1.002533 ATGGTGGTAGGGTAGCGGT 59.997 57.895 0.00 0.00 0.00 5.68
435 1233 0.262580 ATGGTGGTAGGGTAGCGGTA 59.737 55.000 0.00 0.00 0.00 4.02
436 1234 0.396139 TGGTGGTAGGGTAGCGGTAG 60.396 60.000 0.00 0.00 0.00 3.18
437 1235 1.111715 GGTGGTAGGGTAGCGGTAGG 61.112 65.000 0.00 0.00 0.00 3.18
438 1236 1.111715 GTGGTAGGGTAGCGGTAGGG 61.112 65.000 0.00 0.00 0.00 3.53
439 1237 1.231355 GGTAGGGTAGCGGTAGGGT 59.769 63.158 0.00 0.00 0.00 4.34
440 1238 0.397675 GGTAGGGTAGCGGTAGGGTT 60.398 60.000 0.00 0.00 0.00 4.11
441 1239 0.749049 GTAGGGTAGCGGTAGGGTTG 59.251 60.000 0.00 0.00 0.00 3.77
442 1240 0.630673 TAGGGTAGCGGTAGGGTTGA 59.369 55.000 0.00 0.00 0.00 3.18
443 1241 0.974525 AGGGTAGCGGTAGGGTTGAC 60.975 60.000 0.00 0.00 0.00 3.18
444 1242 1.140375 GGTAGCGGTAGGGTTGACG 59.860 63.158 0.00 0.00 0.00 4.35
445 1243 1.140375 GTAGCGGTAGGGTTGACGG 59.860 63.158 0.00 0.00 0.00 4.79
446 1244 2.713967 TAGCGGTAGGGTTGACGGC 61.714 63.158 0.00 0.00 41.89 5.68
447 1245 4.078516 GCGGTAGGGTTGACGGCT 62.079 66.667 0.00 0.00 39.36 5.52
448 1246 2.125673 CGGTAGGGTTGACGGCTG 60.126 66.667 0.00 0.00 0.00 4.85
449 1247 2.642254 CGGTAGGGTTGACGGCTGA 61.642 63.158 0.00 0.00 0.00 4.26
450 1248 1.218316 GGTAGGGTTGACGGCTGAG 59.782 63.158 0.00 0.00 0.00 3.35
451 1249 1.218316 GTAGGGTTGACGGCTGAGG 59.782 63.158 0.00 0.00 0.00 3.86
452 1250 2.656069 TAGGGTTGACGGCTGAGGC 61.656 63.158 0.00 0.00 37.82 4.70
453 1251 4.329545 GGGTTGACGGCTGAGGCA 62.330 66.667 6.86 0.00 40.87 4.75
454 1252 2.743928 GGTTGACGGCTGAGGCAG 60.744 66.667 6.86 1.42 40.87 4.85
476 1274 2.391821 CGTTTAGCAGCGCTGACG 59.608 61.111 40.21 33.04 40.10 4.35
477 1275 2.372690 CGTTTAGCAGCGCTGACGT 61.373 57.895 40.21 24.63 41.20 4.34
478 1276 1.130613 GTTTAGCAGCGCTGACGTG 59.869 57.895 40.21 15.86 40.10 4.49
479 1277 2.027073 TTTAGCAGCGCTGACGTGG 61.027 57.895 40.21 14.10 40.10 4.94
480 1278 2.428960 TTTAGCAGCGCTGACGTGGA 62.429 55.000 40.21 17.00 40.10 4.02
481 1279 2.225791 TTAGCAGCGCTGACGTGGAT 62.226 55.000 40.21 14.18 40.10 3.41
482 1280 1.381165 TAGCAGCGCTGACGTGGATA 61.381 55.000 40.21 13.02 40.10 2.59
483 1281 1.809619 GCAGCGCTGACGTGGATAA 60.810 57.895 40.21 0.00 42.83 1.75
484 1282 1.756375 GCAGCGCTGACGTGGATAAG 61.756 60.000 40.21 10.24 42.83 1.73
485 1283 0.458543 CAGCGCTGACGTGGATAAGT 60.459 55.000 33.66 0.00 42.83 2.24
486 1284 0.179134 AGCGCTGACGTGGATAAGTC 60.179 55.000 10.39 0.00 42.83 3.01
487 1285 0.179134 GCGCTGACGTGGATAAGTCT 60.179 55.000 0.00 0.00 42.83 3.24
488 1286 1.736032 GCGCTGACGTGGATAAGTCTT 60.736 52.381 0.00 0.00 42.83 3.01
489 1287 2.186076 CGCTGACGTGGATAAGTCTTC 58.814 52.381 0.00 0.00 36.44 2.87
490 1288 2.159366 CGCTGACGTGGATAAGTCTTCT 60.159 50.000 0.00 0.00 36.44 2.85
491 1289 3.064958 CGCTGACGTGGATAAGTCTTCTA 59.935 47.826 0.00 0.00 36.44 2.10
492 1290 4.352887 GCTGACGTGGATAAGTCTTCTAC 58.647 47.826 0.00 0.00 36.44 2.59
493 1291 4.734108 GCTGACGTGGATAAGTCTTCTACC 60.734 50.000 0.00 0.00 36.44 3.18
494 1292 4.338012 TGACGTGGATAAGTCTTCTACCA 58.662 43.478 0.00 0.00 36.44 3.25
495 1293 4.954202 TGACGTGGATAAGTCTTCTACCAT 59.046 41.667 0.00 0.00 36.44 3.55
496 1294 5.421056 TGACGTGGATAAGTCTTCTACCATT 59.579 40.000 0.00 1.37 36.44 3.16
497 1295 6.604396 TGACGTGGATAAGTCTTCTACCATTA 59.396 38.462 0.00 0.00 36.44 1.90
498 1296 7.040473 ACGTGGATAAGTCTTCTACCATTAG 57.960 40.000 8.03 6.46 0.00 1.73
499 1297 6.040616 ACGTGGATAAGTCTTCTACCATTAGG 59.959 42.308 8.03 0.00 42.21 2.69
500 1298 6.516860 CGTGGATAAGTCTTCTACCATTAGGG 60.517 46.154 8.03 0.00 44.81 3.53
509 1307 2.510906 CCATTAGGGTCCCTGGCG 59.489 66.667 21.83 7.95 34.61 5.69
510 1308 2.510906 CATTAGGGTCCCTGGCGG 59.489 66.667 21.83 3.53 34.61 6.13
511 1309 2.042261 ATTAGGGTCCCTGGCGGT 59.958 61.111 21.83 0.00 34.61 5.68
512 1310 1.052124 CATTAGGGTCCCTGGCGGTA 61.052 60.000 21.83 0.00 34.61 4.02
513 1311 0.763223 ATTAGGGTCCCTGGCGGTAG 60.763 60.000 21.83 0.00 34.61 3.18
514 1312 2.884179 TTAGGGTCCCTGGCGGTAGG 62.884 65.000 21.83 0.00 34.61 3.18
526 1324 2.853235 GCGGTAGGCCATTATACCTT 57.147 50.000 15.03 0.00 39.49 3.50
527 1325 3.967332 GCGGTAGGCCATTATACCTTA 57.033 47.619 15.03 0.00 39.49 2.69
528 1326 3.593096 GCGGTAGGCCATTATACCTTAC 58.407 50.000 15.03 1.58 39.49 2.34
529 1327 3.618263 GCGGTAGGCCATTATACCTTACC 60.618 52.174 15.03 9.10 39.49 2.85
530 1328 3.367703 CGGTAGGCCATTATACCTTACCG 60.368 52.174 16.88 16.88 41.87 4.02
531 1329 3.580022 GGTAGGCCATTATACCTTACCGT 59.420 47.826 5.01 0.00 38.74 4.83
532 1330 4.322273 GGTAGGCCATTATACCTTACCGTC 60.322 50.000 5.01 0.00 38.74 4.79
533 1331 3.311091 AGGCCATTATACCTTACCGTCA 58.689 45.455 5.01 0.00 29.74 4.35
534 1332 3.908103 AGGCCATTATACCTTACCGTCAT 59.092 43.478 5.01 0.00 29.74 3.06
535 1333 4.020485 AGGCCATTATACCTTACCGTCATC 60.020 45.833 5.01 0.00 29.74 2.92
536 1334 4.262721 GGCCATTATACCTTACCGTCATCA 60.263 45.833 0.00 0.00 0.00 3.07
537 1335 5.302360 GCCATTATACCTTACCGTCATCAA 58.698 41.667 0.00 0.00 0.00 2.57
538 1336 5.178809 GCCATTATACCTTACCGTCATCAAC 59.821 44.000 0.00 0.00 0.00 3.18
539 1337 6.522054 CCATTATACCTTACCGTCATCAACT 58.478 40.000 0.00 0.00 0.00 3.16
540 1338 6.645415 CCATTATACCTTACCGTCATCAACTC 59.355 42.308 0.00 0.00 0.00 3.01
541 1339 4.667519 ATACCTTACCGTCATCAACTCC 57.332 45.455 0.00 0.00 0.00 3.85
542 1340 1.203994 ACCTTACCGTCATCAACTCCG 59.796 52.381 0.00 0.00 0.00 4.63
543 1341 1.475280 CCTTACCGTCATCAACTCCGA 59.525 52.381 0.00 0.00 0.00 4.55
544 1342 2.527100 CTTACCGTCATCAACTCCGAC 58.473 52.381 0.00 0.00 0.00 4.79
545 1343 0.813184 TACCGTCATCAACTCCGACC 59.187 55.000 0.00 0.00 0.00 4.79
546 1344 1.516386 CCGTCATCAACTCCGACCG 60.516 63.158 0.00 0.00 0.00 4.79
547 1345 1.211969 CGTCATCAACTCCGACCGT 59.788 57.895 0.00 0.00 0.00 4.83
548 1346 0.448990 CGTCATCAACTCCGACCGTA 59.551 55.000 0.00 0.00 0.00 4.02
549 1347 1.531264 CGTCATCAACTCCGACCGTAG 60.531 57.143 0.00 0.00 0.00 3.51
567 1365 5.391060 CGTAGGAAAAATGACCGAATCTC 57.609 43.478 0.00 0.00 0.00 2.75
568 1366 4.026804 CGTAGGAAAAATGACCGAATCTCG 60.027 45.833 0.00 0.00 40.07 4.04
569 1367 4.202245 AGGAAAAATGACCGAATCTCGA 57.798 40.909 0.00 0.00 43.74 4.04
570 1368 4.575885 AGGAAAAATGACCGAATCTCGAA 58.424 39.130 0.00 0.00 43.74 3.71
571 1369 5.001232 AGGAAAAATGACCGAATCTCGAAA 58.999 37.500 0.00 0.00 43.74 3.46
572 1370 5.648092 AGGAAAAATGACCGAATCTCGAAAT 59.352 36.000 0.00 0.00 43.74 2.17
573 1371 6.151144 AGGAAAAATGACCGAATCTCGAAATT 59.849 34.615 0.00 0.00 43.74 1.82
574 1372 6.806739 GGAAAAATGACCGAATCTCGAAATTT 59.193 34.615 0.00 0.00 43.74 1.82
575 1373 7.328493 GGAAAAATGACCGAATCTCGAAATTTT 59.672 33.333 0.00 4.59 43.74 1.82
576 1374 9.337091 GAAAAATGACCGAATCTCGAAATTTTA 57.663 29.630 12.40 0.00 43.74 1.52
577 1375 8.669394 AAAATGACCGAATCTCGAAATTTTAC 57.331 30.769 0.00 0.00 43.74 2.01
578 1376 5.789710 TGACCGAATCTCGAAATTTTACC 57.210 39.130 0.00 0.00 43.74 2.85
579 1377 5.239351 TGACCGAATCTCGAAATTTTACCA 58.761 37.500 0.00 0.00 43.74 3.25
580 1378 5.701750 TGACCGAATCTCGAAATTTTACCAA 59.298 36.000 0.00 0.00 43.74 3.67
581 1379 6.205076 TGACCGAATCTCGAAATTTTACCAAA 59.795 34.615 0.00 0.00 43.74 3.28
582 1380 6.376177 ACCGAATCTCGAAATTTTACCAAAC 58.624 36.000 0.00 0.00 43.74 2.93
583 1381 5.506832 CCGAATCTCGAAATTTTACCAAACG 59.493 40.000 0.00 0.00 43.74 3.60
584 1382 6.075280 CGAATCTCGAAATTTTACCAAACGT 58.925 36.000 0.00 0.00 43.74 3.99
585 1383 6.245710 CGAATCTCGAAATTTTACCAAACGTC 59.754 38.462 0.00 0.00 43.74 4.34
586 1384 5.987777 TCTCGAAATTTTACCAAACGTCA 57.012 34.783 0.00 0.00 0.00 4.35
587 1385 5.981174 TCTCGAAATTTTACCAAACGTCAG 58.019 37.500 0.00 0.00 0.00 3.51
593 1835 7.504924 AAATTTTACCAAACGTCAGATCTGA 57.495 32.000 21.67 21.67 37.24 3.27
606 1848 4.568956 TCAGATCTGACTCAATTTTCGCA 58.431 39.130 21.67 0.00 34.14 5.10
610 1852 6.304922 CAGATCTGACTCAATTTTCGCAAAAG 59.695 38.462 18.34 0.00 33.22 2.27
612 1854 6.317789 TCTGACTCAATTTTCGCAAAAGAT 57.682 33.333 0.00 0.00 33.22 2.40
615 1857 6.502652 TGACTCAATTTTCGCAAAAGATTCA 58.497 32.000 3.69 3.69 33.22 2.57
619 1861 7.168135 ACTCAATTTTCGCAAAAGATTCAAGAC 59.832 33.333 0.00 0.00 33.22 3.01
620 1862 6.977502 TCAATTTTCGCAAAAGATTCAAGACA 59.022 30.769 0.00 0.00 33.22 3.41
621 1863 7.652909 TCAATTTTCGCAAAAGATTCAAGACAT 59.347 29.630 0.00 0.00 33.22 3.06
625 1867 6.070897 TCGCAAAAGATTCAAGACATCAAA 57.929 33.333 0.00 0.00 0.00 2.69
629 1871 7.442657 GCAAAAGATTCAAGACATCAAATTCG 58.557 34.615 0.00 0.00 0.00 3.34
639 1881 2.736721 ACATCAAATTCGTCCTCGTGTG 59.263 45.455 0.00 0.00 38.33 3.82
671 1915 0.673333 TTCGCGCAACCATGATGACT 60.673 50.000 8.75 0.00 0.00 3.41
672 1916 0.673333 TCGCGCAACCATGATGACTT 60.673 50.000 8.75 0.00 0.00 3.01
673 1917 0.247814 CGCGCAACCATGATGACTTC 60.248 55.000 8.75 0.00 0.00 3.01
674 1918 0.804364 GCGCAACCATGATGACTTCA 59.196 50.000 0.30 0.00 39.12 3.02
693 1937 8.324306 TGACTTCATCATTGAATTAACCTCTCT 58.676 33.333 0.00 0.00 40.95 3.10
700 1944 4.222124 TGAATTAACCTCTCTTGGCCTC 57.778 45.455 3.32 0.00 0.00 4.70
712 1956 1.352622 TTGGCCTCCACCTCAACTGT 61.353 55.000 3.32 0.00 30.78 3.55
713 1957 1.302832 GGCCTCCACCTCAACTGTG 60.303 63.158 0.00 0.00 0.00 3.66
714 1958 1.754745 GCCTCCACCTCAACTGTGA 59.245 57.895 0.00 0.00 35.74 3.58
731 1975 1.142748 GACTGCATCCTCCACCTCG 59.857 63.158 0.00 0.00 0.00 4.63
777 2025 1.741145 GTGTTTATGTTTCCCGCCGAT 59.259 47.619 0.00 0.00 0.00 4.18
793 2041 1.202417 CCGATGAGGCAATGTACGTCT 60.202 52.381 0.00 0.00 0.00 4.18
807 2055 1.512926 ACGTCTGTCCACTGATTTGC 58.487 50.000 0.00 0.00 0.00 3.68
880 2133 2.598394 GCTGCCAAGTGCCAAGGA 60.598 61.111 0.00 0.00 40.16 3.36
881 2134 2.924105 GCTGCCAAGTGCCAAGGAC 61.924 63.158 0.00 0.00 40.16 3.85
910 2163 5.371526 CAGCATGTACAAATATCCCACTCT 58.628 41.667 0.00 0.00 0.00 3.24
912 2165 5.367937 AGCATGTACAAATATCCCACTCTCT 59.632 40.000 0.00 0.00 0.00 3.10
922 2180 0.686112 CCCACTCTCTCCTCCACTCC 60.686 65.000 0.00 0.00 0.00 3.85
962 2223 2.176546 CACGCCAAGTCCGCATTG 59.823 61.111 0.00 0.00 0.00 2.82
1461 2764 1.045911 CCCTCTGTCTCTACCAGCCC 61.046 65.000 0.00 0.00 0.00 5.19
1611 2915 1.055040 AGCACTTCTTGGAGCTGTCT 58.945 50.000 0.00 0.00 35.72 3.41
1612 2916 2.251818 AGCACTTCTTGGAGCTGTCTA 58.748 47.619 0.00 0.00 35.72 2.59
1621 2925 4.532126 TCTTGGAGCTGTCTAAAAGGATGA 59.468 41.667 0.00 0.00 0.00 2.92
1622 2926 4.908601 TGGAGCTGTCTAAAAGGATGAA 57.091 40.909 0.00 0.00 0.00 2.57
1665 2969 3.640407 AGCTGCCGCTCCTTGGAA 61.640 61.111 0.00 0.00 45.15 3.53
1666 2970 2.672996 GCTGCCGCTCCTTGGAAA 60.673 61.111 0.00 0.00 0.00 3.13
1668 2972 2.282180 TGCCGCTCCTTGGAAACC 60.282 61.111 0.00 0.00 0.00 3.27
1701 3005 1.406065 CCATCATCTCCGGCCTCTGT 61.406 60.000 0.00 0.00 0.00 3.41
2005 3334 4.988716 ACGGCCTCGACCTGGACA 62.989 66.667 0.00 0.00 40.11 4.02
2268 3603 3.194968 TGGAAGGGTACGACAAGAAGATC 59.805 47.826 0.00 0.00 0.00 2.75
2280 3615 3.193691 ACAAGAAGATCGTCGAGTCCAAT 59.806 43.478 0.00 0.00 0.00 3.16
2447 5429 3.419759 GAAGAAAAGCGCCGCCGA 61.420 61.111 4.98 0.00 36.29 5.54
2548 5545 5.682869 CATCCATGCACGTCAATAATACTG 58.317 41.667 0.00 0.00 0.00 2.74
2578 5583 6.645415 CACGGACTTTTACAGACTTCTTACAT 59.355 38.462 0.00 0.00 0.00 2.29
2609 5614 3.379372 TGGACCGATTAGTACAGTAGCAC 59.621 47.826 0.00 0.00 0.00 4.40
2630 5635 0.306840 GGATCACGTGCTGCATGATG 59.693 55.000 27.26 19.72 33.21 3.07
2631 5636 1.292992 GATCACGTGCTGCATGATGA 58.707 50.000 27.26 23.49 33.21 2.92
2632 5637 1.871676 GATCACGTGCTGCATGATGAT 59.128 47.619 27.26 26.30 33.21 2.45
2633 5638 1.011333 TCACGTGCTGCATGATGATG 58.989 50.000 27.26 15.07 0.00 3.07
2634 5639 0.730840 CACGTGCTGCATGATGATGT 59.269 50.000 27.26 1.62 31.50 3.06
2635 5640 1.935199 CACGTGCTGCATGATGATGTA 59.065 47.619 27.26 0.00 31.50 2.29
2636 5641 1.935873 ACGTGCTGCATGATGATGTAC 59.064 47.619 27.26 0.00 31.50 2.90
2637 5642 1.935199 CGTGCTGCATGATGATGTACA 59.065 47.619 16.69 0.00 31.50 2.90
2638 5643 2.352342 CGTGCTGCATGATGATGTACAA 59.648 45.455 16.69 0.00 31.50 2.41
2639 5644 3.002965 CGTGCTGCATGATGATGTACAAT 59.997 43.478 16.69 0.00 31.50 2.71
2640 5645 4.496840 CGTGCTGCATGATGATGTACAATT 60.497 41.667 16.69 0.00 31.50 2.32
2641 5646 4.974275 GTGCTGCATGATGATGTACAATTC 59.026 41.667 5.27 0.00 31.50 2.17
2642 5647 4.641094 TGCTGCATGATGATGTACAATTCA 59.359 37.500 0.00 0.00 31.50 2.57
2643 5648 5.300792 TGCTGCATGATGATGTACAATTCAT 59.699 36.000 10.98 10.98 35.33 2.57
2644 5649 6.183360 TGCTGCATGATGATGTACAATTCATT 60.183 34.615 12.15 0.00 32.84 2.57
2645 5650 6.700081 GCTGCATGATGATGTACAATTCATTT 59.300 34.615 12.15 2.86 32.84 2.32
2646 5651 7.863877 GCTGCATGATGATGTACAATTCATTTA 59.136 33.333 12.15 6.61 32.84 1.40
2647 5652 9.908152 CTGCATGATGATGTACAATTCATTTAT 57.092 29.630 12.15 8.21 32.84 1.40
2648 5653 9.902196 TGCATGATGATGTACAATTCATTTATC 57.098 29.630 12.15 2.45 32.84 1.75
2649 5654 9.902196 GCATGATGATGTACAATTCATTTATCA 57.098 29.630 12.15 7.41 35.67 2.15
2719 5725 9.760926 ATCTCACATCTAAGTCTATAGCCATTA 57.239 33.333 0.00 0.00 0.00 1.90
2720 5726 9.588096 TCTCACATCTAAGTCTATAGCCATTAA 57.412 33.333 0.00 0.00 0.00 1.40
2731 5737 9.381038 AGTCTATAGCCATTAAATGTTCTCCTA 57.619 33.333 0.00 0.00 0.00 2.94
2739 5745 9.952188 GCCATTAAATGTTCTCCTATCTTTAAC 57.048 33.333 0.00 0.00 0.00 2.01
2746 5752 6.403049 TGTTCTCCTATCTTTAACATTCGCA 58.597 36.000 0.00 0.00 0.00 5.10
2747 5753 7.047891 TGTTCTCCTATCTTTAACATTCGCAT 58.952 34.615 0.00 0.00 0.00 4.73
2769 5775 0.935196 ACGTTTTCTGTCACGCTTCC 59.065 50.000 0.00 0.00 40.16 3.46
2783 5789 0.533951 GCTTCCTTGGATTTGCCCTG 59.466 55.000 0.00 0.00 34.97 4.45
2808 5814 2.251371 GTGCTTTCGTTGTCCGCC 59.749 61.111 0.00 0.00 36.19 6.13
2809 5815 2.975799 TGCTTTCGTTGTCCGCCC 60.976 61.111 0.00 0.00 36.19 6.13
2812 5818 2.966309 CTTTCGTTGTCCGCCCAGC 61.966 63.158 0.00 0.00 36.19 4.85
2823 5950 1.211190 CGCCCAGCAAAGAAAGCTC 59.789 57.895 0.00 0.00 41.14 4.09
2846 5974 1.302285 CCCAGCCAGCTTGTCATCT 59.698 57.895 0.00 0.00 0.00 2.90
3181 6341 6.757897 ATACATGTTCAACATTGTCCGAAT 57.242 33.333 2.30 0.00 36.53 3.34
3183 6343 4.278170 ACATGTTCAACATTGTCCGAATGT 59.722 37.500 0.00 0.00 42.19 2.71
3185 6345 4.854399 TGTTCAACATTGTCCGAATGTTC 58.146 39.130 9.93 2.47 45.87 3.18
3239 6399 9.328845 ACCTTTTATTACTCGTTCAACACTTTA 57.671 29.630 0.00 0.00 0.00 1.85
3322 6483 9.019764 CAACATTTTTCAAATACTCGTTCAACT 57.980 29.630 0.00 0.00 0.00 3.16
3379 6544 8.255394 ACTTTTTCAACATTTTCAACTTGAGG 57.745 30.769 0.00 0.00 0.00 3.86
3380 6545 7.334171 ACTTTTTCAACATTTTCAACTTGAGGG 59.666 33.333 0.00 0.00 0.00 4.30
3381 6546 4.935352 TCAACATTTTCAACTTGAGGGG 57.065 40.909 0.00 0.00 0.00 4.79
3382 6547 4.285863 TCAACATTTTCAACTTGAGGGGT 58.714 39.130 0.00 0.00 0.00 4.95
3383 6548 4.099266 TCAACATTTTCAACTTGAGGGGTG 59.901 41.667 0.00 0.00 0.00 4.61
3384 6549 3.642141 ACATTTTCAACTTGAGGGGTGT 58.358 40.909 0.00 0.00 0.00 4.16
3385 6550 4.030216 ACATTTTCAACTTGAGGGGTGTT 58.970 39.130 0.00 0.00 0.00 3.32
3386 6551 4.469586 ACATTTTCAACTTGAGGGGTGTTT 59.530 37.500 0.00 0.00 0.00 2.83
3387 6552 5.045942 ACATTTTCAACTTGAGGGGTGTTTT 60.046 36.000 0.00 0.00 0.00 2.43
3388 6553 5.491323 TTTTCAACTTGAGGGGTGTTTTT 57.509 34.783 0.00 0.00 0.00 1.94
3410 6575 5.413309 TTTTTGTTGTTTCACATGGAGGT 57.587 34.783 0.00 0.00 0.00 3.85
3411 6576 5.413309 TTTTGTTGTTTCACATGGAGGTT 57.587 34.783 0.00 0.00 0.00 3.50
3412 6577 4.383850 TTGTTGTTTCACATGGAGGTTG 57.616 40.909 0.00 0.00 0.00 3.77
3413 6578 2.100584 TGTTGTTTCACATGGAGGTTGC 59.899 45.455 0.00 0.00 0.00 4.17
3414 6579 2.064434 TGTTTCACATGGAGGTTGCA 57.936 45.000 0.00 0.00 0.00 4.08
3415 6580 2.382882 TGTTTCACATGGAGGTTGCAA 58.617 42.857 0.00 0.00 0.00 4.08
3416 6581 2.964464 TGTTTCACATGGAGGTTGCAAT 59.036 40.909 0.59 0.00 0.00 3.56
3417 6582 3.387374 TGTTTCACATGGAGGTTGCAATT 59.613 39.130 0.59 0.00 0.00 2.32
3418 6583 4.586421 TGTTTCACATGGAGGTTGCAATTA 59.414 37.500 0.59 0.00 0.00 1.40
3419 6584 5.163513 GTTTCACATGGAGGTTGCAATTAG 58.836 41.667 0.59 0.00 0.00 1.73
3420 6585 4.299586 TCACATGGAGGTTGCAATTAGA 57.700 40.909 0.59 0.00 0.00 2.10
3421 6586 4.009675 TCACATGGAGGTTGCAATTAGAC 58.990 43.478 0.59 0.00 0.00 2.59
3422 6587 3.129287 CACATGGAGGTTGCAATTAGACC 59.871 47.826 0.59 0.00 0.00 3.85
3423 6588 2.507407 TGGAGGTTGCAATTAGACCC 57.493 50.000 0.59 0.00 33.89 4.46
3424 6589 1.992557 TGGAGGTTGCAATTAGACCCT 59.007 47.619 0.59 2.52 33.89 4.34
3425 6590 2.026262 TGGAGGTTGCAATTAGACCCTC 60.026 50.000 18.63 18.63 33.89 4.30
3426 6591 2.280628 GAGGTTGCAATTAGACCCTCG 58.719 52.381 13.83 0.00 33.89 4.63
3427 6592 1.906574 AGGTTGCAATTAGACCCTCGA 59.093 47.619 0.59 0.00 33.89 4.04
3428 6593 2.007608 GGTTGCAATTAGACCCTCGAC 58.992 52.381 0.59 0.00 0.00 4.20
3429 6594 2.007608 GTTGCAATTAGACCCTCGACC 58.992 52.381 0.59 0.00 0.00 4.79
3430 6595 1.568504 TGCAATTAGACCCTCGACCT 58.431 50.000 0.00 0.00 0.00 3.85
3431 6596 1.207089 TGCAATTAGACCCTCGACCTG 59.793 52.381 0.00 0.00 0.00 4.00
3432 6597 1.941325 CAATTAGACCCTCGACCTGC 58.059 55.000 0.00 0.00 0.00 4.85
3433 6598 1.207089 CAATTAGACCCTCGACCTGCA 59.793 52.381 0.00 0.00 0.00 4.41
3434 6599 1.568504 ATTAGACCCTCGACCTGCAA 58.431 50.000 0.00 0.00 0.00 4.08
3435 6600 0.606604 TTAGACCCTCGACCTGCAAC 59.393 55.000 0.00 0.00 0.00 4.17
3436 6601 0.251653 TAGACCCTCGACCTGCAACT 60.252 55.000 0.00 0.00 0.00 3.16
3437 6602 0.251653 AGACCCTCGACCTGCAACTA 60.252 55.000 0.00 0.00 0.00 2.24
3438 6603 0.173708 GACCCTCGACCTGCAACTAG 59.826 60.000 0.00 0.00 0.00 2.57
3439 6604 1.258445 ACCCTCGACCTGCAACTAGG 61.258 60.000 0.00 0.00 43.71 3.02
3440 6605 1.517832 CCTCGACCTGCAACTAGGG 59.482 63.158 0.00 0.00 42.35 3.53
3441 6606 1.517832 CTCGACCTGCAACTAGGGG 59.482 63.158 0.00 0.00 42.35 4.79
3442 6607 1.229082 TCGACCTGCAACTAGGGGT 60.229 57.895 0.00 0.00 42.35 4.95
3443 6608 0.834687 TCGACCTGCAACTAGGGGTT 60.835 55.000 0.00 0.00 42.35 4.11
3444 6609 0.036306 CGACCTGCAACTAGGGGTTT 59.964 55.000 0.00 0.00 42.35 3.27
3445 6610 1.822506 GACCTGCAACTAGGGGTTTC 58.177 55.000 0.00 0.00 42.35 2.78
3446 6611 1.351350 GACCTGCAACTAGGGGTTTCT 59.649 52.381 0.00 0.00 42.35 2.52
3447 6612 1.073923 ACCTGCAACTAGGGGTTTCTG 59.926 52.381 0.00 0.00 42.35 3.02
3448 6613 1.073923 CCTGCAACTAGGGGTTTCTGT 59.926 52.381 0.00 0.00 35.74 3.41
3449 6614 2.427506 CTGCAACTAGGGGTTTCTGTC 58.572 52.381 0.00 0.00 35.74 3.51
3450 6615 1.270625 TGCAACTAGGGGTTTCTGTCG 60.271 52.381 0.00 0.00 35.74 4.35
3451 6616 1.944430 GCAACTAGGGGTTTCTGTCGG 60.944 57.143 0.00 0.00 35.74 4.79
3452 6617 0.323957 AACTAGGGGTTTCTGTCGGC 59.676 55.000 0.00 0.00 33.90 5.54
3453 6618 1.221021 CTAGGGGTTTCTGTCGGCC 59.779 63.158 0.00 0.00 0.00 6.13
3454 6619 1.229400 TAGGGGTTTCTGTCGGCCT 60.229 57.895 0.00 0.00 0.00 5.19
3455 6620 0.041535 TAGGGGTTTCTGTCGGCCTA 59.958 55.000 0.00 0.00 0.00 3.93
3456 6621 1.221021 GGGGTTTCTGTCGGCCTAG 59.779 63.158 0.00 0.00 0.00 3.02
3457 6622 1.551019 GGGGTTTCTGTCGGCCTAGT 61.551 60.000 0.00 0.00 0.00 2.57
3458 6623 0.323957 GGGTTTCTGTCGGCCTAGTT 59.676 55.000 0.00 0.00 0.00 2.24
3459 6624 1.439679 GGTTTCTGTCGGCCTAGTTG 58.560 55.000 0.00 0.00 0.00 3.16
3460 6625 0.796927 GTTTCTGTCGGCCTAGTTGC 59.203 55.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.503314 CGGCGGTAGGGTTCGACC 62.503 72.222 0.00 0.00 37.60 4.79
1 2 3.407046 CTCGGCGGTAGGGTTCGAC 62.407 68.421 7.21 0.00 0.00 4.20
25 26 0.754472 GCTGTTATACCCTACCGCCA 59.246 55.000 0.00 0.00 0.00 5.69
31 32 4.084287 CGATGGTAGGCTGTTATACCCTA 58.916 47.826 0.00 0.00 40.70 3.53
32 33 2.897969 CGATGGTAGGCTGTTATACCCT 59.102 50.000 0.00 0.00 40.70 4.34
41 42 2.423446 GCTCCCGATGGTAGGCTG 59.577 66.667 0.00 0.00 0.00 4.85
62 63 0.035152 CTGCCATCAACCCTACTGCA 60.035 55.000 0.00 0.00 0.00 4.41
65 66 1.207791 CCTCTGCCATCAACCCTACT 58.792 55.000 0.00 0.00 0.00 2.57
69 70 2.825836 CGCCTCTGCCATCAACCC 60.826 66.667 0.00 0.00 0.00 4.11
70 71 2.825836 CCGCCTCTGCCATCAACC 60.826 66.667 0.00 0.00 0.00 3.77
71 72 3.512516 GCCGCCTCTGCCATCAAC 61.513 66.667 0.00 0.00 0.00 3.18
72 73 3.565961 TTGCCGCCTCTGCCATCAA 62.566 57.895 0.00 0.00 0.00 2.57
74 75 3.207669 CTTGCCGCCTCTGCCATC 61.208 66.667 0.00 0.00 0.00 3.51
85 86 1.867233 AGCATAGATAAACGCTTGCCG 59.133 47.619 0.00 0.00 44.21 5.69
98 99 7.828717 TGGAAAACTTATTCATGTCAGCATAGA 59.171 33.333 0.00 0.00 33.30 1.98
102 103 5.048083 GGTGGAAAACTTATTCATGTCAGCA 60.048 40.000 0.00 0.00 0.00 4.41
131 132 2.198304 CTGGCGGTAGAAAAGGCCCT 62.198 60.000 0.00 0.00 44.96 5.19
157 158 1.401905 GCCCTGATGTTAGAAAAGGCG 59.598 52.381 0.00 0.00 0.00 5.52
158 159 1.751351 GGCCCTGATGTTAGAAAAGGC 59.249 52.381 0.00 0.00 38.45 4.35
159 160 2.379005 GGGCCCTGATGTTAGAAAAGG 58.621 52.381 17.04 0.00 0.00 3.11
160 161 2.379005 GGGGCCCTGATGTTAGAAAAG 58.621 52.381 24.38 0.00 0.00 2.27
161 162 1.340600 CGGGGCCCTGATGTTAGAAAA 60.341 52.381 28.28 0.00 0.00 2.29
162 163 0.254747 CGGGGCCCTGATGTTAGAAA 59.745 55.000 28.28 0.00 0.00 2.52
164 165 1.002403 TCGGGGCCCTGATGTTAGA 59.998 57.895 30.65 5.34 0.00 2.10
165 166 1.146263 GTCGGGGCCCTGATGTTAG 59.854 63.158 36.01 10.23 33.49 2.34
166 167 2.727392 CGTCGGGGCCCTGATGTTA 61.727 63.158 36.23 14.49 34.54 2.41
167 168 4.096003 CGTCGGGGCCCTGATGTT 62.096 66.667 36.23 0.00 34.54 2.71
170 171 4.468769 TACCGTCGGGGCCCTGAT 62.469 66.667 36.01 22.69 40.62 2.90
177 178 1.553706 ATAATAGCCTACCGTCGGGG 58.446 55.000 17.28 9.29 43.62 5.73
178 179 2.424956 GGTATAATAGCCTACCGTCGGG 59.575 54.545 17.28 0.00 40.11 5.14
179 180 3.350833 AGGTATAATAGCCTACCGTCGG 58.649 50.000 10.48 10.48 41.89 4.79
180 181 5.163713 GGTAAGGTATAATAGCCTACCGTCG 60.164 48.000 0.00 0.00 41.89 5.12
183 184 5.105595 GGTGGTAAGGTATAATAGCCTACCG 60.106 48.000 0.00 0.00 41.89 4.02
189 190 6.653740 GGTTGATGGTGGTAAGGTATAATAGC 59.346 42.308 0.00 0.00 0.00 2.97
215 216 2.369203 TGACCATGTTTTCTACCACCGA 59.631 45.455 0.00 0.00 0.00 4.69
229 230 7.485810 TGATAAAATTTCAGCATCTGACCATG 58.514 34.615 0.00 0.00 40.46 3.66
240 241 6.071952 TGACCCTGACTTGATAAAATTTCAGC 60.072 38.462 0.00 0.00 31.05 4.26
269 1065 8.464770 TTCAATTTTTGTGAAAGTTGAGTCAG 57.535 30.769 8.93 0.00 45.84 3.51
280 1076 8.558973 AATCTGGTGTTTTCAATTTTTGTGAA 57.441 26.923 0.00 0.00 33.21 3.18
290 1086 3.813166 GAGGACGAATCTGGTGTTTTCAA 59.187 43.478 0.00 0.00 0.00 2.69
291 1087 3.399330 GAGGACGAATCTGGTGTTTTCA 58.601 45.455 0.00 0.00 0.00 2.69
292 1088 2.412089 CGAGGACGAATCTGGTGTTTTC 59.588 50.000 0.00 0.00 42.66 2.29
293 1089 2.224209 ACGAGGACGAATCTGGTGTTTT 60.224 45.455 0.00 0.00 42.66 2.43
341 1138 6.884295 AGGTTAATTCAATCAAGGAATCGTGA 59.116 34.615 0.00 0.00 34.02 4.35
342 1139 7.066284 AGAGGTTAATTCAATCAAGGAATCGTG 59.934 37.037 0.00 0.00 34.02 4.35
343 1140 7.112779 AGAGGTTAATTCAATCAAGGAATCGT 58.887 34.615 0.00 0.00 34.02 3.73
344 1141 7.254932 GGAGAGGTTAATTCAATCAAGGAATCG 60.255 40.741 0.00 0.00 34.02 3.34
345 1142 7.777440 AGGAGAGGTTAATTCAATCAAGGAATC 59.223 37.037 0.00 0.00 34.02 2.52
346 1143 7.559170 CAGGAGAGGTTAATTCAATCAAGGAAT 59.441 37.037 0.00 0.00 36.57 3.01
347 1144 6.886459 CAGGAGAGGTTAATTCAATCAAGGAA 59.114 38.462 0.00 0.00 0.00 3.36
349 1146 6.183347 ACAGGAGAGGTTAATTCAATCAAGG 58.817 40.000 0.00 0.00 0.00 3.61
372 1170 0.603975 GCACAGTTGAGGTGGAGGAC 60.604 60.000 0.00 0.00 36.76 3.85
373 1171 1.754745 GCACAGTTGAGGTGGAGGA 59.245 57.895 0.00 0.00 36.76 3.71
390 1188 2.191641 GAGGTGGAGGATGCAGGC 59.808 66.667 0.00 0.00 36.81 4.85
391 1189 2.503061 CGAGGTGGAGGATGCAGG 59.497 66.667 0.00 0.00 36.81 4.85
392 1190 2.060383 TCCGAGGTGGAGGATGCAG 61.060 63.158 0.00 0.00 43.74 4.41
393 1191 2.038813 TCCGAGGTGGAGGATGCA 59.961 61.111 0.00 0.00 43.74 3.96
407 1205 1.734137 CTACCACCATCGACCTCCG 59.266 63.158 0.00 0.00 40.25 4.63
408 1206 1.400530 CCCTACCACCATCGACCTCC 61.401 65.000 0.00 0.00 0.00 4.30
409 1207 0.686769 ACCCTACCACCATCGACCTC 60.687 60.000 0.00 0.00 0.00 3.85
410 1208 0.632835 TACCCTACCACCATCGACCT 59.367 55.000 0.00 0.00 0.00 3.85
411 1209 1.038280 CTACCCTACCACCATCGACC 58.962 60.000 0.00 0.00 0.00 4.79
412 1210 0.388294 GCTACCCTACCACCATCGAC 59.612 60.000 0.00 0.00 0.00 4.20
413 1211 1.105167 CGCTACCCTACCACCATCGA 61.105 60.000 0.00 0.00 0.00 3.59
414 1212 1.362717 CGCTACCCTACCACCATCG 59.637 63.158 0.00 0.00 0.00 3.84
415 1213 1.047034 ACCGCTACCCTACCACCATC 61.047 60.000 0.00 0.00 0.00 3.51
416 1214 0.262580 TACCGCTACCCTACCACCAT 59.737 55.000 0.00 0.00 0.00 3.55
417 1215 0.396139 CTACCGCTACCCTACCACCA 60.396 60.000 0.00 0.00 0.00 4.17
418 1216 1.111715 CCTACCGCTACCCTACCACC 61.112 65.000 0.00 0.00 0.00 4.61
419 1217 1.111715 CCCTACCGCTACCCTACCAC 61.112 65.000 0.00 0.00 0.00 4.16
420 1218 1.231068 CCCTACCGCTACCCTACCA 59.769 63.158 0.00 0.00 0.00 3.25
421 1219 0.397675 AACCCTACCGCTACCCTACC 60.398 60.000 0.00 0.00 0.00 3.18
422 1220 0.749049 CAACCCTACCGCTACCCTAC 59.251 60.000 0.00 0.00 0.00 3.18
423 1221 0.630673 TCAACCCTACCGCTACCCTA 59.369 55.000 0.00 0.00 0.00 3.53
424 1222 0.974525 GTCAACCCTACCGCTACCCT 60.975 60.000 0.00 0.00 0.00 4.34
425 1223 1.519246 GTCAACCCTACCGCTACCC 59.481 63.158 0.00 0.00 0.00 3.69
426 1224 1.140375 CGTCAACCCTACCGCTACC 59.860 63.158 0.00 0.00 0.00 3.18
427 1225 1.140375 CCGTCAACCCTACCGCTAC 59.860 63.158 0.00 0.00 0.00 3.58
428 1226 2.713967 GCCGTCAACCCTACCGCTA 61.714 63.158 0.00 0.00 0.00 4.26
429 1227 4.078516 GCCGTCAACCCTACCGCT 62.079 66.667 0.00 0.00 0.00 5.52
430 1228 4.078516 AGCCGTCAACCCTACCGC 62.079 66.667 0.00 0.00 0.00 5.68
431 1229 2.125673 CAGCCGTCAACCCTACCG 60.126 66.667 0.00 0.00 0.00 4.02
432 1230 1.218316 CTCAGCCGTCAACCCTACC 59.782 63.158 0.00 0.00 0.00 3.18
433 1231 1.218316 CCTCAGCCGTCAACCCTAC 59.782 63.158 0.00 0.00 0.00 3.18
434 1232 2.656069 GCCTCAGCCGTCAACCCTA 61.656 63.158 0.00 0.00 0.00 3.53
435 1233 4.021925 GCCTCAGCCGTCAACCCT 62.022 66.667 0.00 0.00 0.00 4.34
436 1234 4.329545 TGCCTCAGCCGTCAACCC 62.330 66.667 0.00 0.00 38.69 4.11
437 1235 2.743928 CTGCCTCAGCCGTCAACC 60.744 66.667 0.00 0.00 38.69 3.77
446 1244 0.445436 CTAAACGCTTGCTGCCTCAG 59.555 55.000 0.00 0.00 38.78 3.35
447 1245 1.577328 GCTAAACGCTTGCTGCCTCA 61.577 55.000 0.00 0.00 38.78 3.86
448 1246 1.135523 GCTAAACGCTTGCTGCCTC 59.864 57.895 0.00 0.00 38.78 4.70
449 1247 1.580845 CTGCTAAACGCTTGCTGCCT 61.581 55.000 0.00 0.00 40.11 4.75
450 1248 1.154150 CTGCTAAACGCTTGCTGCC 60.154 57.895 0.00 0.00 40.11 4.85
451 1249 1.799121 GCTGCTAAACGCTTGCTGC 60.799 57.895 7.38 7.38 42.41 5.25
452 1250 1.510623 CGCTGCTAAACGCTTGCTG 60.511 57.895 0.00 0.00 40.11 4.41
453 1251 2.863153 CGCTGCTAAACGCTTGCT 59.137 55.556 0.00 0.00 40.11 3.91
459 1257 2.372690 ACGTCAGCGCTGCTAAACG 61.373 57.895 34.08 34.08 45.72 3.60
460 1258 1.130613 CACGTCAGCGCTGCTAAAC 59.869 57.895 32.44 22.89 42.83 2.01
461 1259 2.027073 CCACGTCAGCGCTGCTAAA 61.027 57.895 32.44 12.89 42.83 1.85
462 1260 2.225791 ATCCACGTCAGCGCTGCTAA 62.226 55.000 32.44 13.31 42.83 3.09
463 1261 1.381165 TATCCACGTCAGCGCTGCTA 61.381 55.000 32.44 14.14 42.83 3.49
464 1262 2.225791 TTATCCACGTCAGCGCTGCT 62.226 55.000 32.44 14.11 42.83 4.24
465 1263 1.756375 CTTATCCACGTCAGCGCTGC 61.756 60.000 32.44 24.35 42.83 5.25
466 1264 0.458543 ACTTATCCACGTCAGCGCTG 60.459 55.000 31.53 31.53 42.83 5.18
467 1265 0.179134 GACTTATCCACGTCAGCGCT 60.179 55.000 2.64 2.64 42.83 5.92
468 1266 0.179134 AGACTTATCCACGTCAGCGC 60.179 55.000 0.00 0.00 42.83 5.92
469 1267 2.159366 AGAAGACTTATCCACGTCAGCG 60.159 50.000 0.00 0.00 44.93 5.18
470 1268 3.512033 AGAAGACTTATCCACGTCAGC 57.488 47.619 0.00 0.00 32.68 4.26
471 1269 4.398358 TGGTAGAAGACTTATCCACGTCAG 59.602 45.833 0.00 0.00 32.68 3.51
472 1270 4.338012 TGGTAGAAGACTTATCCACGTCA 58.662 43.478 0.00 0.00 32.68 4.35
473 1271 4.978083 TGGTAGAAGACTTATCCACGTC 57.022 45.455 0.00 0.00 0.00 4.34
474 1272 5.934402 AATGGTAGAAGACTTATCCACGT 57.066 39.130 7.37 0.00 0.00 4.49
475 1273 6.448006 CCTAATGGTAGAAGACTTATCCACG 58.552 44.000 7.37 0.00 0.00 4.94
476 1274 6.760291 CCCTAATGGTAGAAGACTTATCCAC 58.240 44.000 7.37 0.00 0.00 4.02
477 1275 6.996180 CCCTAATGGTAGAAGACTTATCCA 57.004 41.667 7.59 7.59 0.00 3.41
492 1290 2.510906 CGCCAGGGACCCTAATGG 59.489 66.667 14.38 13.08 41.37 3.16
493 1291 1.052124 TACCGCCAGGGACCCTAATG 61.052 60.000 14.38 6.11 43.47 1.90
494 1292 0.763223 CTACCGCCAGGGACCCTAAT 60.763 60.000 14.38 0.00 43.47 1.73
495 1293 1.382146 CTACCGCCAGGGACCCTAA 60.382 63.158 14.38 0.00 43.47 2.69
496 1294 2.281091 CTACCGCCAGGGACCCTA 59.719 66.667 14.38 0.00 43.47 3.53
497 1295 4.798682 CCTACCGCCAGGGACCCT 62.799 72.222 7.44 7.44 43.47 4.34
507 1305 2.853235 AAGGTATAATGGCCTACCGC 57.147 50.000 12.06 0.00 41.89 5.68
508 1306 3.367703 CGGTAAGGTATAATGGCCTACCG 60.368 52.174 16.88 16.88 41.89 4.02
509 1307 3.580022 ACGGTAAGGTATAATGGCCTACC 59.420 47.826 10.32 10.32 38.13 3.18
510 1308 4.281688 TGACGGTAAGGTATAATGGCCTAC 59.718 45.833 3.32 0.00 34.15 3.18
511 1309 4.482030 TGACGGTAAGGTATAATGGCCTA 58.518 43.478 3.32 0.00 34.15 3.93
512 1310 3.311091 TGACGGTAAGGTATAATGGCCT 58.689 45.455 3.32 0.00 36.51 5.19
513 1311 3.756933 TGACGGTAAGGTATAATGGCC 57.243 47.619 0.00 0.00 0.00 5.36
514 1312 4.890088 TGATGACGGTAAGGTATAATGGC 58.110 43.478 0.00 0.00 0.00 4.40
515 1313 6.522054 AGTTGATGACGGTAAGGTATAATGG 58.478 40.000 0.00 0.00 0.00 3.16
516 1314 6.645415 GGAGTTGATGACGGTAAGGTATAATG 59.355 42.308 0.00 0.00 0.00 1.90
517 1315 6.516194 CGGAGTTGATGACGGTAAGGTATAAT 60.516 42.308 0.00 0.00 0.00 1.28
518 1316 5.221106 CGGAGTTGATGACGGTAAGGTATAA 60.221 44.000 0.00 0.00 0.00 0.98
519 1317 4.276678 CGGAGTTGATGACGGTAAGGTATA 59.723 45.833 0.00 0.00 0.00 1.47
520 1318 3.067742 CGGAGTTGATGACGGTAAGGTAT 59.932 47.826 0.00 0.00 0.00 2.73
521 1319 2.424601 CGGAGTTGATGACGGTAAGGTA 59.575 50.000 0.00 0.00 0.00 3.08
522 1320 1.203994 CGGAGTTGATGACGGTAAGGT 59.796 52.381 0.00 0.00 0.00 3.50
523 1321 1.475280 TCGGAGTTGATGACGGTAAGG 59.525 52.381 0.00 0.00 0.00 2.69
524 1322 2.527100 GTCGGAGTTGATGACGGTAAG 58.473 52.381 0.00 0.00 0.00 2.34
525 1323 1.203052 GGTCGGAGTTGATGACGGTAA 59.797 52.381 0.00 0.00 33.45 2.85
526 1324 0.813184 GGTCGGAGTTGATGACGGTA 59.187 55.000 0.00 0.00 33.45 4.02
527 1325 1.590147 GGTCGGAGTTGATGACGGT 59.410 57.895 0.00 0.00 33.45 4.83
528 1326 1.516386 CGGTCGGAGTTGATGACGG 60.516 63.158 0.00 0.00 33.45 4.79
529 1327 0.448990 TACGGTCGGAGTTGATGACG 59.551 55.000 0.00 0.00 33.45 4.35
530 1328 1.202268 CCTACGGTCGGAGTTGATGAC 60.202 57.143 1.73 0.00 0.00 3.06
531 1329 1.100510 CCTACGGTCGGAGTTGATGA 58.899 55.000 1.73 0.00 0.00 2.92
532 1330 1.100510 TCCTACGGTCGGAGTTGATG 58.899 55.000 0.00 0.00 0.00 3.07
533 1331 1.843368 TTCCTACGGTCGGAGTTGAT 58.157 50.000 1.40 0.00 0.00 2.57
534 1332 1.619654 TTTCCTACGGTCGGAGTTGA 58.380 50.000 1.40 0.00 0.00 3.18
535 1333 2.443887 TTTTCCTACGGTCGGAGTTG 57.556 50.000 1.40 0.00 0.00 3.16
536 1334 3.007182 TCATTTTTCCTACGGTCGGAGTT 59.993 43.478 1.40 0.00 0.00 3.01
537 1335 2.564062 TCATTTTTCCTACGGTCGGAGT 59.436 45.455 1.40 0.00 0.00 3.85
538 1336 2.928116 GTCATTTTTCCTACGGTCGGAG 59.072 50.000 1.40 0.00 0.00 4.63
539 1337 2.354003 GGTCATTTTTCCTACGGTCGGA 60.354 50.000 0.00 0.00 0.00 4.55
540 1338 2.004733 GGTCATTTTTCCTACGGTCGG 58.995 52.381 0.00 0.00 0.00 4.79
541 1339 1.657094 CGGTCATTTTTCCTACGGTCG 59.343 52.381 0.00 0.00 0.00 4.79
542 1340 2.963432 TCGGTCATTTTTCCTACGGTC 58.037 47.619 0.00 0.00 0.00 4.79
543 1341 3.405823 TTCGGTCATTTTTCCTACGGT 57.594 42.857 0.00 0.00 0.00 4.83
544 1342 4.189231 AGATTCGGTCATTTTTCCTACGG 58.811 43.478 0.00 0.00 0.00 4.02
545 1343 4.026804 CGAGATTCGGTCATTTTTCCTACG 60.027 45.833 0.00 0.00 36.00 3.51
546 1344 5.107133 TCGAGATTCGGTCATTTTTCCTAC 58.893 41.667 0.00 0.00 40.88 3.18
547 1345 5.333299 TCGAGATTCGGTCATTTTTCCTA 57.667 39.130 0.00 0.00 40.88 2.94
548 1346 4.202245 TCGAGATTCGGTCATTTTTCCT 57.798 40.909 0.00 0.00 40.88 3.36
549 1347 4.939509 TTCGAGATTCGGTCATTTTTCC 57.060 40.909 0.00 0.00 40.88 3.13
550 1348 7.796958 AAATTTCGAGATTCGGTCATTTTTC 57.203 32.000 1.13 0.00 40.88 2.29
551 1349 9.124807 GTAAAATTTCGAGATTCGGTCATTTTT 57.875 29.630 1.13 9.97 40.88 1.94
552 1350 7.753580 GGTAAAATTTCGAGATTCGGTCATTTT 59.246 33.333 1.13 14.47 40.88 1.82
553 1351 7.094549 TGGTAAAATTTCGAGATTCGGTCATTT 60.095 33.333 1.13 0.00 40.88 2.32
554 1352 6.373216 TGGTAAAATTTCGAGATTCGGTCATT 59.627 34.615 1.13 0.00 40.88 2.57
555 1353 5.878116 TGGTAAAATTTCGAGATTCGGTCAT 59.122 36.000 1.13 0.00 40.88 3.06
556 1354 5.239351 TGGTAAAATTTCGAGATTCGGTCA 58.761 37.500 1.13 0.00 40.88 4.02
557 1355 5.789710 TGGTAAAATTTCGAGATTCGGTC 57.210 39.130 1.13 0.00 40.88 4.79
558 1356 6.376177 GTTTGGTAAAATTTCGAGATTCGGT 58.624 36.000 1.13 0.00 40.88 4.69
559 1357 5.506832 CGTTTGGTAAAATTTCGAGATTCGG 59.493 40.000 1.13 0.00 40.88 4.30
560 1358 6.075280 ACGTTTGGTAAAATTTCGAGATTCG 58.925 36.000 1.13 1.72 42.10 3.34
561 1359 7.073265 TGACGTTTGGTAAAATTTCGAGATTC 58.927 34.615 1.13 0.00 0.00 2.52
562 1360 6.961576 TGACGTTTGGTAAAATTTCGAGATT 58.038 32.000 0.00 0.00 0.00 2.40
563 1361 6.425721 TCTGACGTTTGGTAAAATTTCGAGAT 59.574 34.615 0.00 0.00 0.00 2.75
564 1362 5.754406 TCTGACGTTTGGTAAAATTTCGAGA 59.246 36.000 0.00 0.00 0.00 4.04
565 1363 5.981174 TCTGACGTTTGGTAAAATTTCGAG 58.019 37.500 0.00 0.00 0.00 4.04
566 1364 5.987777 TCTGACGTTTGGTAAAATTTCGA 57.012 34.783 0.00 0.00 0.00 3.71
567 1365 6.519761 CAGATCTGACGTTTGGTAAAATTTCG 59.480 38.462 18.34 0.00 0.00 3.46
568 1366 7.581476 TCAGATCTGACGTTTGGTAAAATTTC 58.419 34.615 21.67 0.00 34.14 2.17
569 1367 7.504924 TCAGATCTGACGTTTGGTAAAATTT 57.495 32.000 21.67 0.00 34.14 1.82
584 1382 4.568956 TGCGAAAATTGAGTCAGATCTGA 58.431 39.130 21.67 21.67 37.24 3.27
585 1383 4.934075 TGCGAAAATTGAGTCAGATCTG 57.066 40.909 17.07 17.07 0.00 2.90
586 1384 5.947228 TTTGCGAAAATTGAGTCAGATCT 57.053 34.783 0.00 0.00 0.00 2.75
587 1385 6.373779 TCTTTTGCGAAAATTGAGTCAGATC 58.626 36.000 0.00 0.00 0.00 2.75
593 1835 7.168135 GTCTTGAATCTTTTGCGAAAATTGAGT 59.832 33.333 0.00 0.00 0.00 3.41
599 1841 6.502652 TGATGTCTTGAATCTTTTGCGAAAA 58.497 32.000 0.00 0.00 0.00 2.29
602 1844 5.687770 TTGATGTCTTGAATCTTTTGCGA 57.312 34.783 0.00 0.00 0.00 5.10
603 1845 6.939551 ATTTGATGTCTTGAATCTTTTGCG 57.060 33.333 0.00 0.00 0.00 4.85
604 1846 7.115378 ACGAATTTGATGTCTTGAATCTTTTGC 59.885 33.333 0.00 0.00 0.00 3.68
606 1848 7.809806 GGACGAATTTGATGTCTTGAATCTTTT 59.190 33.333 0.00 0.00 33.21 2.27
610 1852 6.428385 AGGACGAATTTGATGTCTTGAATC 57.572 37.500 0.00 0.00 33.21 2.52
612 1854 4.388773 CGAGGACGAATTTGATGTCTTGAA 59.611 41.667 0.00 0.00 42.66 2.69
615 1857 3.679980 CACGAGGACGAATTTGATGTCTT 59.320 43.478 0.00 0.00 42.66 3.01
619 1861 2.094258 CCACACGAGGACGAATTTGATG 59.906 50.000 0.00 0.00 42.66 3.07
620 1862 2.346803 CCACACGAGGACGAATTTGAT 58.653 47.619 0.00 0.00 42.66 2.57
621 1863 1.606994 CCCACACGAGGACGAATTTGA 60.607 52.381 0.00 0.00 42.66 2.69
625 1867 2.264794 GCCCACACGAGGACGAAT 59.735 61.111 0.00 0.00 42.66 3.34
629 1871 4.681978 AAGCGCCCACACGAGGAC 62.682 66.667 2.29 0.00 34.06 3.85
672 1916 6.319658 GCCAAGAGAGGTTAATTCAATGATGA 59.680 38.462 0.00 0.00 0.00 2.92
673 1917 6.460676 GGCCAAGAGAGGTTAATTCAATGATG 60.461 42.308 0.00 0.00 0.00 3.07
674 1918 5.595952 GGCCAAGAGAGGTTAATTCAATGAT 59.404 40.000 0.00 0.00 0.00 2.45
682 1926 2.239907 GTGGAGGCCAAGAGAGGTTAAT 59.760 50.000 5.01 0.00 34.18 1.40
693 1937 1.352622 ACAGTTGAGGTGGAGGCCAA 61.353 55.000 5.01 0.00 34.18 4.52
700 1944 0.179048 TGCAGTCACAGTTGAGGTGG 60.179 55.000 0.00 0.00 36.90 4.61
712 1956 1.607801 CGAGGTGGAGGATGCAGTCA 61.608 60.000 0.00 0.00 36.81 3.41
713 1957 1.142748 CGAGGTGGAGGATGCAGTC 59.857 63.158 0.00 0.00 36.81 3.51
714 1958 2.362369 CCGAGGTGGAGGATGCAGT 61.362 63.158 0.00 0.00 36.81 4.40
731 1975 1.302752 TGTGACATGCCACAGCTCC 60.303 57.895 11.13 0.00 41.63 4.70
777 2025 1.067142 GGACAGACGTACATTGCCTCA 60.067 52.381 0.00 0.00 0.00 3.86
787 2035 2.683968 GCAAATCAGTGGACAGACGTA 58.316 47.619 0.00 0.00 0.00 3.57
793 2041 2.324330 CCGCGCAAATCAGTGGACA 61.324 57.895 8.75 0.00 40.26 4.02
879 2132 3.564027 GTACATGCTGGCGGCGTC 61.564 66.667 10.78 3.62 45.43 5.19
880 2133 3.892740 TTGTACATGCTGGCGGCGT 62.893 57.895 14.59 11.15 45.43 5.68
881 2134 1.992233 ATTTGTACATGCTGGCGGCG 61.992 55.000 14.59 0.51 45.43 6.46
910 2163 2.363018 CTGGCGGAGTGGAGGAGA 60.363 66.667 0.00 0.00 0.00 3.71
954 2215 2.229062 GACGGAGAGATATCAATGCGGA 59.771 50.000 19.81 0.00 0.00 5.54
1123 2411 2.997897 GACGGTGACCTGGAGGCT 60.998 66.667 0.00 0.00 39.32 4.58
1272 2569 2.574399 GCGAGCTCGAAGACCCTT 59.426 61.111 38.74 0.00 43.02 3.95
1611 2915 3.581755 CCGTGAGTCGTTCATCCTTTTA 58.418 45.455 0.00 0.00 38.29 1.52
1612 2916 2.413837 CCGTGAGTCGTTCATCCTTTT 58.586 47.619 0.00 0.00 38.29 2.27
1621 2925 4.353437 GACGCCCCGTGAGTCGTT 62.353 66.667 0.00 0.00 41.37 3.85
1687 2991 0.468400 GGAGTACAGAGGCCGGAGAT 60.468 60.000 5.05 0.00 0.00 2.75
1830 3149 1.004440 GCCGAAGCAGAGGAACACT 60.004 57.895 0.00 0.00 39.53 3.55
1872 3191 1.599047 CGCCATCTCCTTGACCTGT 59.401 57.895 0.00 0.00 0.00 4.00
2005 3334 4.083862 GCCTTCCGGGAAGAGCGT 62.084 66.667 33.18 0.00 41.71 5.07
2268 3603 0.458543 CCACCTCATTGGACTCGACG 60.459 60.000 0.00 0.00 39.24 5.12
2447 5429 0.179187 CTTCGATCAGCTGTCGTCGT 60.179 55.000 26.56 6.45 39.91 4.34
2548 5545 2.033151 GTCTGTAAAAGTCCGTGTGTGC 60.033 50.000 0.00 0.00 0.00 4.57
2578 5583 4.819105 ACTAATCGGTCCAAGATCAACA 57.181 40.909 0.00 0.00 0.00 3.33
2609 5614 0.741927 TCATGCAGCACGTGATCCAG 60.742 55.000 22.23 1.81 39.44 3.86
2616 5621 1.935873 GTACATCATCATGCAGCACGT 59.064 47.619 0.00 0.00 32.57 4.49
2623 5628 9.902196 TGATAAATGAATTGTACATCATCATGC 57.098 29.630 11.44 4.69 35.29 4.06
2647 5652 9.920133 GTGAGATAGCTATTTCACATAATCTGA 57.080 33.333 35.28 10.65 43.42 3.27
2648 5653 9.702494 TGTGAGATAGCTATTTCACATAATCTG 57.298 33.333 37.45 0.00 46.42 2.90
2656 5661 9.571810 CATCTAGATGTGAGATAGCTATTTCAC 57.428 37.037 34.38 34.38 43.91 3.18
2719 5725 8.398665 GCGAATGTTAAAGATAGGAGAACATTT 58.601 33.333 11.37 0.00 45.80 2.32
2731 5737 6.417191 AACGTACATGCGAATGTTAAAGAT 57.583 33.333 15.80 0.00 36.08 2.40
2739 5745 4.065423 ACAGAAAACGTACATGCGAATG 57.935 40.909 0.40 0.40 35.59 2.67
2746 5752 2.750948 AGCGTGACAGAAAACGTACAT 58.249 42.857 0.00 0.00 41.76 2.29
2747 5753 2.212869 AGCGTGACAGAAAACGTACA 57.787 45.000 0.00 0.00 41.76 2.90
2769 5775 1.937546 GCGACCAGGGCAAATCCAAG 61.938 60.000 0.00 0.00 36.21 3.61
2808 5814 1.154338 CGCGAGCTTTCTTTGCTGG 60.154 57.895 0.00 0.00 41.30 4.85
2809 5815 4.429561 CGCGAGCTTTCTTTGCTG 57.570 55.556 0.00 0.00 41.30 4.41
2836 5964 3.423645 GCACGAACTGTAAGATGACAAGC 60.424 47.826 0.00 0.00 37.43 4.01
2846 5974 5.010922 TCCCTTTACTTAGCACGAACTGTAA 59.989 40.000 0.00 0.00 0.00 2.41
3020 6166 3.878160 ACAAAAACGAAGAAAAGCCCA 57.122 38.095 0.00 0.00 0.00 5.36
3156 6315 7.857734 TTCGGACAATGTTGAACATGTATAT 57.142 32.000 12.09 0.00 37.97 0.86
3396 6561 3.665745 ATTGCAACCTCCATGTGAAAC 57.334 42.857 0.00 0.00 37.35 2.78
3397 6562 5.048083 GTCTAATTGCAACCTCCATGTGAAA 60.048 40.000 0.00 0.00 0.00 2.69
3398 6563 4.458989 GTCTAATTGCAACCTCCATGTGAA 59.541 41.667 0.00 0.00 0.00 3.18
3399 6564 4.009675 GTCTAATTGCAACCTCCATGTGA 58.990 43.478 0.00 0.00 0.00 3.58
3400 6565 3.129287 GGTCTAATTGCAACCTCCATGTG 59.871 47.826 0.00 0.00 0.00 3.21
3401 6566 3.356290 GGTCTAATTGCAACCTCCATGT 58.644 45.455 0.00 0.00 0.00 3.21
3402 6567 2.689983 GGGTCTAATTGCAACCTCCATG 59.310 50.000 0.00 0.00 33.42 3.66
3403 6568 2.582636 AGGGTCTAATTGCAACCTCCAT 59.417 45.455 0.00 0.00 33.42 3.41
3404 6569 1.992557 AGGGTCTAATTGCAACCTCCA 59.007 47.619 0.00 0.00 33.42 3.86
3405 6570 2.644676 GAGGGTCTAATTGCAACCTCC 58.355 52.381 16.86 9.06 38.80 4.30
3406 6571 2.093658 TCGAGGGTCTAATTGCAACCTC 60.094 50.000 17.44 17.44 40.76 3.85
3407 6572 1.906574 TCGAGGGTCTAATTGCAACCT 59.093 47.619 0.00 1.73 33.42 3.50
3408 6573 2.007608 GTCGAGGGTCTAATTGCAACC 58.992 52.381 0.00 0.00 0.00 3.77
3409 6574 2.007608 GGTCGAGGGTCTAATTGCAAC 58.992 52.381 0.00 0.00 0.00 4.17
3410 6575 1.906574 AGGTCGAGGGTCTAATTGCAA 59.093 47.619 0.00 0.00 0.00 4.08
3411 6576 1.207089 CAGGTCGAGGGTCTAATTGCA 59.793 52.381 0.00 0.00 0.00 4.08
3412 6577 1.941325 CAGGTCGAGGGTCTAATTGC 58.059 55.000 0.00 0.00 0.00 3.56
3413 6578 1.207089 TGCAGGTCGAGGGTCTAATTG 59.793 52.381 0.00 0.00 0.00 2.32
3414 6579 1.568504 TGCAGGTCGAGGGTCTAATT 58.431 50.000 0.00 0.00 0.00 1.40
3415 6580 1.207329 GTTGCAGGTCGAGGGTCTAAT 59.793 52.381 0.00 0.00 0.00 1.73
3416 6581 0.606604 GTTGCAGGTCGAGGGTCTAA 59.393 55.000 0.00 0.00 0.00 2.10
3417 6582 0.251653 AGTTGCAGGTCGAGGGTCTA 60.252 55.000 0.00 0.00 0.00 2.59
3418 6583 0.251653 TAGTTGCAGGTCGAGGGTCT 60.252 55.000 0.00 0.00 0.00 3.85
3419 6584 0.173708 CTAGTTGCAGGTCGAGGGTC 59.826 60.000 0.00 0.00 0.00 4.46
3420 6585 1.258445 CCTAGTTGCAGGTCGAGGGT 61.258 60.000 0.00 0.00 0.00 4.34
3421 6586 1.517832 CCTAGTTGCAGGTCGAGGG 59.482 63.158 0.00 0.00 0.00 4.30
3422 6587 1.517832 CCCTAGTTGCAGGTCGAGG 59.482 63.158 0.00 7.45 33.44 4.63
3423 6588 1.258445 ACCCCTAGTTGCAGGTCGAG 61.258 60.000 0.00 0.00 33.44 4.04
3424 6589 0.834687 AACCCCTAGTTGCAGGTCGA 60.835 55.000 0.00 0.00 37.29 4.20
3425 6590 0.036306 AAACCCCTAGTTGCAGGTCG 59.964 55.000 0.00 0.00 39.19 4.79
3426 6591 1.351350 AGAAACCCCTAGTTGCAGGTC 59.649 52.381 0.00 0.00 39.19 3.85
3427 6592 1.073923 CAGAAACCCCTAGTTGCAGGT 59.926 52.381 0.00 0.00 39.19 4.00
3428 6593 1.073923 ACAGAAACCCCTAGTTGCAGG 59.926 52.381 0.00 0.00 39.19 4.85
3429 6594 2.427506 GACAGAAACCCCTAGTTGCAG 58.572 52.381 0.00 0.00 39.19 4.41
3430 6595 1.270625 CGACAGAAACCCCTAGTTGCA 60.271 52.381 0.00 0.00 39.19 4.08
3431 6596 1.439679 CGACAGAAACCCCTAGTTGC 58.560 55.000 0.00 0.00 39.19 4.17
3432 6597 1.944430 GCCGACAGAAACCCCTAGTTG 60.944 57.143 0.00 0.00 39.19 3.16
3433 6598 0.323957 GCCGACAGAAACCCCTAGTT 59.676 55.000 0.00 0.00 41.81 2.24
3434 6599 1.551019 GGCCGACAGAAACCCCTAGT 61.551 60.000 0.00 0.00 0.00 2.57
3435 6600 1.221021 GGCCGACAGAAACCCCTAG 59.779 63.158 0.00 0.00 0.00 3.02
3436 6601 0.041535 TAGGCCGACAGAAACCCCTA 59.958 55.000 0.00 0.00 0.00 3.53
3437 6602 1.229400 TAGGCCGACAGAAACCCCT 60.229 57.895 0.00 0.00 0.00 4.79
3438 6603 1.221021 CTAGGCCGACAGAAACCCC 59.779 63.158 0.00 0.00 0.00 4.95
3439 6604 0.323957 AACTAGGCCGACAGAAACCC 59.676 55.000 8.79 0.00 0.00 4.11
3440 6605 1.439679 CAACTAGGCCGACAGAAACC 58.560 55.000 8.79 0.00 0.00 3.27
3441 6606 0.796927 GCAACTAGGCCGACAGAAAC 59.203 55.000 8.79 0.00 0.00 2.78
3442 6607 3.226884 GCAACTAGGCCGACAGAAA 57.773 52.632 8.79 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.