Multiple sequence alignment - TraesCS5B01G470900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G470900 chr5B 100.000 3883 0 0 1 3883 644450635 644446753 0.000000e+00 7171.0
1 TraesCS5B01G470900 chr5D 97.638 2117 30 9 1745 3847 513539320 513537210 0.000000e+00 3615.0
2 TraesCS5B01G470900 chr5D 97.187 711 19 1 880 1589 513540026 513539316 0.000000e+00 1201.0
3 TraesCS5B01G470900 chr5D 95.685 394 11 1 464 857 513540483 513540096 2.550000e-176 628.0
4 TraesCS5B01G470900 chr5A 93.906 722 26 5 880 1592 641222503 641221791 0.000000e+00 1074.0
5 TraesCS5B01G470900 chr5A 89.185 638 55 4 1721 2357 641221761 641221137 0.000000e+00 784.0
6 TraesCS5B01G470900 chr5A 82.155 919 105 23 2499 3384 641220442 641219550 0.000000e+00 734.0
7 TraesCS5B01G470900 chr5A 94.430 395 16 1 463 857 641222964 641222576 1.540000e-168 603.0
8 TraesCS5B01G470900 chr5A 91.453 117 10 0 2375 2491 641220969 641220853 1.120000e-35 161.0
9 TraesCS5B01G470900 chr7B 85.161 465 29 21 7 456 697546785 697546346 1.280000e-119 440.0
10 TraesCS5B01G470900 chr4A 80.935 556 89 15 1767 2315 626327301 626326756 1.290000e-114 424.0
11 TraesCS5B01G470900 chr4A 94.578 166 9 0 1582 1747 517406468 517406633 1.380000e-64 257.0
12 TraesCS5B01G470900 chr4A 81.667 120 17 5 340 455 687057702 687057820 1.150000e-15 95.3
13 TraesCS5B01G470900 chr4A 80.800 125 17 7 334 455 655568248 655568368 1.490000e-14 91.6
14 TraesCS5B01G470900 chr2D 78.605 645 106 17 934 1574 640015309 640015925 7.820000e-107 398.0
15 TraesCS5B01G470900 chr2D 95.808 167 7 0 1583 1749 362930806 362930972 1.780000e-68 270.0
16 TraesCS5B01G470900 chr2B 78.956 594 107 15 1766 2356 795576801 795577379 4.700000e-104 388.0
17 TraesCS5B01G470900 chr2B 78.511 591 116 7 1752 2336 795766255 795765670 1.020000e-100 377.0
18 TraesCS5B01G470900 chr2B 78.378 518 81 16 1766 2276 796022766 796023259 1.360000e-79 307.0
19 TraesCS5B01G470900 chr2B 85.660 265 28 6 1323 1580 795576503 795576764 1.780000e-68 270.0
20 TraesCS5B01G470900 chr2B 80.579 242 45 2 2551 2791 796023736 796023976 6.630000e-43 185.0
21 TraesCS5B01G470900 chr2B 85.496 131 14 5 332 460 643304934 643305061 8.750000e-27 132.0
22 TraesCS5B01G470900 chr2B 80.800 125 19 5 334 456 35127972 35127851 4.130000e-15 93.5
23 TraesCS5B01G470900 chr2A 77.583 629 112 15 954 1580 761903209 761902608 1.720000e-93 353.0
24 TraesCS5B01G470900 chr2A 79.879 497 77 15 1776 2268 761519869 761520346 3.710000e-90 342.0
25 TraesCS5B01G470900 chr2A 76.861 618 115 20 963 1568 762207054 762206453 1.350000e-84 324.0
26 TraesCS5B01G470900 chr6B 94.798 173 8 1 1585 1756 77788179 77788007 6.390000e-68 268.0
27 TraesCS5B01G470900 chr6B 84.483 116 16 2 341 455 79884016 79883902 3.170000e-21 113.0
28 TraesCS5B01G470900 chr3D 96.319 163 6 0 1584 1746 537154864 537154702 6.390000e-68 268.0
29 TraesCS5B01G470900 chr1D 95.266 169 8 0 1578 1746 463381898 463382066 6.390000e-68 268.0
30 TraesCS5B01G470900 chr1D 95.152 165 8 0 1583 1747 338937375 338937211 1.070000e-65 261.0
31 TraesCS5B01G470900 chr4B 94.706 170 8 1 1582 1750 320946533 320946702 2.980000e-66 263.0
32 TraesCS5B01G470900 chr4D 92.655 177 11 2 1574 1749 437295754 437295929 1.790000e-63 254.0
33 TraesCS5B01G470900 chr1B 90.374 187 17 1 1568 1754 638797567 638797382 1.080000e-60 244.0
34 TraesCS5B01G470900 chr1B 82.883 111 18 1 346 456 348492565 348492674 8.880000e-17 99.0
35 TraesCS5B01G470900 chr1B 92.308 39 2 1 1885 1923 17561287 17561250 2.000000e-03 54.7
36 TraesCS5B01G470900 chr3A 84.729 203 27 4 266 465 574294108 574293907 2.370000e-47 200.0
37 TraesCS5B01G470900 chr3B 86.923 130 11 6 332 458 615544643 615544769 1.450000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G470900 chr5B 644446753 644450635 3882 True 7171.000000 7171 100.000000 1 3883 1 chr5B.!!$R1 3882
1 TraesCS5B01G470900 chr5D 513537210 513540483 3273 True 1814.666667 3615 96.836667 464 3847 3 chr5D.!!$R1 3383
2 TraesCS5B01G470900 chr5A 641219550 641222964 3414 True 671.200000 1074 90.225800 463 3384 5 chr5A.!!$R1 2921
3 TraesCS5B01G470900 chr4A 626326756 626327301 545 True 424.000000 424 80.935000 1767 2315 1 chr4A.!!$R1 548
4 TraesCS5B01G470900 chr2D 640015309 640015925 616 False 398.000000 398 78.605000 934 1574 1 chr2D.!!$F2 640
5 TraesCS5B01G470900 chr2B 795765670 795766255 585 True 377.000000 377 78.511000 1752 2336 1 chr2B.!!$R2 584
6 TraesCS5B01G470900 chr2B 795576503 795577379 876 False 329.000000 388 82.308000 1323 2356 2 chr2B.!!$F2 1033
7 TraesCS5B01G470900 chr2B 796022766 796023976 1210 False 246.000000 307 79.478500 1766 2791 2 chr2B.!!$F3 1025
8 TraesCS5B01G470900 chr2A 761902608 761903209 601 True 353.000000 353 77.583000 954 1580 1 chr2A.!!$R1 626
9 TraesCS5B01G470900 chr2A 762206453 762207054 601 True 324.000000 324 76.861000 963 1568 1 chr2A.!!$R2 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.029300 CCAACACAACAGCAAGACCG 59.971 55.0 0.00 0.0 0.00 4.79 F
77 78 0.029300 CAACACAACAGCAAGACCGG 59.971 55.0 0.00 0.0 0.00 5.28 F
205 206 0.032540 GCCAACCACAAAGAGCCAAG 59.967 55.0 0.00 0.0 0.00 3.61 F
218 219 0.037590 AGCCAAGAATTACGTGGGCA 59.962 50.0 0.00 0.0 45.77 5.36 F
344 345 0.107703 ATGGATGTGTACCACGCCAG 60.108 55.0 12.30 0.0 41.88 4.85 F
389 390 0.168128 CACCGGTTGGCTCGATTTTC 59.832 55.0 2.97 0.0 39.70 2.29 F
391 392 0.168128 CCGGTTGGCTCGATTTTCAC 59.832 55.0 0.00 0.0 0.00 3.18 F
701 702 1.014044 TTGCAGATCGTGTTCTCGCC 61.014 55.0 0.00 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1716 1.466856 TTGCTCCGTATGTAGTCCGT 58.533 50.000 0.00 0.00 0.00 4.69 R
1733 1821 2.019807 TGGAAACTACTCCCTCCGTT 57.980 50.000 0.00 0.00 34.22 4.44 R
2011 2111 2.092429 TCATCTGGCTTACATTGTCCCC 60.092 50.000 0.00 0.00 0.00 4.81 R
2114 2217 8.621286 CGCCAAATATCCCCTATATGAAAATAC 58.379 37.037 0.00 0.00 30.84 1.89 R
2357 2463 6.508563 CGTGAGTATATTTGTGTCTGCATCAC 60.509 42.308 13.11 13.11 36.48 3.06 R
2446 2770 8.765517 TCAGATCTATCACCATATACATTGCAT 58.234 33.333 0.00 0.00 0.00 3.96 R
2596 3352 8.868916 CAATTACCTACAAAATTACATTGGTGC 58.131 33.333 0.00 0.00 32.02 5.01 R
2948 3715 3.554960 CGAAAGAGGGATGTGTGAGTCAA 60.555 47.826 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.481112 GCGCACGGCATGGAAAGG 62.481 66.667 0.30 0.00 42.87 3.11
21 22 2.745884 CGCACGGCATGGAAAGGA 60.746 61.111 0.00 0.00 0.00 3.36
22 23 2.331893 CGCACGGCATGGAAAGGAA 61.332 57.895 0.00 0.00 0.00 3.36
23 24 1.656818 CGCACGGCATGGAAAGGAAT 61.657 55.000 0.00 0.00 0.00 3.01
24 25 0.101219 GCACGGCATGGAAAGGAATC 59.899 55.000 0.00 0.00 0.00 2.52
25 26 0.740737 CACGGCATGGAAAGGAATCC 59.259 55.000 0.00 0.00 40.10 3.01
36 37 5.778862 TGGAAAGGAATCCAAAATCGAAAC 58.221 37.500 0.61 0.00 46.36 2.78
37 38 5.303078 TGGAAAGGAATCCAAAATCGAAACA 59.697 36.000 0.61 0.00 46.36 2.83
38 39 6.183360 TGGAAAGGAATCCAAAATCGAAACAA 60.183 34.615 0.61 0.00 46.36 2.83
39 40 6.145534 GGAAAGGAATCCAAAATCGAAACAAC 59.854 38.462 0.61 0.00 39.42 3.32
40 41 5.134202 AGGAATCCAAAATCGAAACAACC 57.866 39.130 0.61 0.00 0.00 3.77
41 42 4.586841 AGGAATCCAAAATCGAAACAACCA 59.413 37.500 0.61 0.00 0.00 3.67
42 43 4.684242 GGAATCCAAAATCGAAACAACCAC 59.316 41.667 0.00 0.00 0.00 4.16
43 44 3.719173 TCCAAAATCGAAACAACCACC 57.281 42.857 0.00 0.00 0.00 4.61
44 45 3.024547 TCCAAAATCGAAACAACCACCA 58.975 40.909 0.00 0.00 0.00 4.17
45 46 3.447586 TCCAAAATCGAAACAACCACCAA 59.552 39.130 0.00 0.00 0.00 3.67
46 47 3.553917 CCAAAATCGAAACAACCACCAAC 59.446 43.478 0.00 0.00 0.00 3.77
47 48 2.766970 AATCGAAACAACCACCAACG 57.233 45.000 0.00 0.00 0.00 4.10
48 49 1.670791 ATCGAAACAACCACCAACGT 58.329 45.000 0.00 0.00 0.00 3.99
49 50 0.727970 TCGAAACAACCACCAACGTG 59.272 50.000 0.00 0.00 39.91 4.49
57 58 2.961768 CACCAACGTGGCATTCCC 59.038 61.111 0.00 0.00 42.67 3.97
58 59 2.282887 ACCAACGTGGCATTCCCC 60.283 61.111 0.00 0.00 42.67 4.81
59 60 2.282816 CCAACGTGGCATTCCCCA 60.283 61.111 0.00 0.00 0.00 4.96
60 61 1.905843 CCAACGTGGCATTCCCCAA 60.906 57.895 0.00 0.00 36.46 4.12
61 62 1.288752 CAACGTGGCATTCCCCAAC 59.711 57.895 0.00 0.00 36.46 3.77
62 63 1.152652 AACGTGGCATTCCCCAACA 60.153 52.632 0.00 0.00 36.46 3.33
63 64 1.460273 AACGTGGCATTCCCCAACAC 61.460 55.000 0.00 0.00 36.46 3.32
64 65 1.900981 CGTGGCATTCCCCAACACA 60.901 57.895 0.00 0.00 36.46 3.72
65 66 1.459455 CGTGGCATTCCCCAACACAA 61.459 55.000 0.00 0.00 36.46 3.33
66 67 0.033366 GTGGCATTCCCCAACACAAC 59.967 55.000 0.00 0.00 36.46 3.32
67 68 0.397675 TGGCATTCCCCAACACAACA 60.398 50.000 0.00 0.00 30.32 3.33
68 69 0.318120 GGCATTCCCCAACACAACAG 59.682 55.000 0.00 0.00 0.00 3.16
69 70 0.319813 GCATTCCCCAACACAACAGC 60.320 55.000 0.00 0.00 0.00 4.40
70 71 1.039068 CATTCCCCAACACAACAGCA 58.961 50.000 0.00 0.00 0.00 4.41
71 72 1.411977 CATTCCCCAACACAACAGCAA 59.588 47.619 0.00 0.00 0.00 3.91
72 73 1.110442 TTCCCCAACACAACAGCAAG 58.890 50.000 0.00 0.00 0.00 4.01
73 74 0.257328 TCCCCAACACAACAGCAAGA 59.743 50.000 0.00 0.00 0.00 3.02
74 75 0.385390 CCCCAACACAACAGCAAGAC 59.615 55.000 0.00 0.00 0.00 3.01
75 76 0.385390 CCCAACACAACAGCAAGACC 59.615 55.000 0.00 0.00 0.00 3.85
76 77 0.029300 CCAACACAACAGCAAGACCG 59.971 55.000 0.00 0.00 0.00 4.79
77 78 0.029300 CAACACAACAGCAAGACCGG 59.971 55.000 0.00 0.00 0.00 5.28
78 79 1.724582 AACACAACAGCAAGACCGGC 61.725 55.000 0.00 0.00 0.00 6.13
79 80 2.972505 ACAACAGCAAGACCGGCG 60.973 61.111 0.00 0.00 36.08 6.46
80 81 3.726517 CAACAGCAAGACCGGCGG 61.727 66.667 27.06 27.06 36.08 6.13
83 84 4.697756 CAGCAAGACCGGCGGGAA 62.698 66.667 31.78 0.00 36.97 3.97
84 85 3.948719 AGCAAGACCGGCGGGAAA 61.949 61.111 31.78 0.00 36.97 3.13
85 86 2.981350 GCAAGACCGGCGGGAAAA 60.981 61.111 31.78 0.00 36.97 2.29
86 87 2.340328 GCAAGACCGGCGGGAAAAT 61.340 57.895 31.78 8.61 36.97 1.82
87 88 1.873270 GCAAGACCGGCGGGAAAATT 61.873 55.000 31.78 13.76 36.97 1.82
88 89 0.109319 CAAGACCGGCGGGAAAATTG 60.109 55.000 31.78 20.93 36.97 2.32
89 90 0.250989 AAGACCGGCGGGAAAATTGA 60.251 50.000 31.78 0.00 36.97 2.57
90 91 0.958876 AGACCGGCGGGAAAATTGAC 60.959 55.000 31.78 9.22 36.97 3.18
91 92 1.929806 GACCGGCGGGAAAATTGACC 61.930 60.000 31.78 1.92 36.97 4.02
92 93 2.706834 CCGGCGGGAAAATTGACCC 61.707 63.158 20.56 9.42 42.43 4.46
93 94 1.974343 CGGCGGGAAAATTGACCCA 60.974 57.895 16.95 0.00 45.83 4.51
94 95 1.589630 GGCGGGAAAATTGACCCAC 59.410 57.895 16.95 9.43 45.83 4.61
95 96 0.898326 GGCGGGAAAATTGACCCACT 60.898 55.000 16.95 0.00 45.83 4.00
96 97 0.966179 GCGGGAAAATTGACCCACTT 59.034 50.000 16.95 0.00 45.83 3.16
97 98 1.336795 GCGGGAAAATTGACCCACTTG 60.337 52.381 16.95 5.25 45.83 3.16
98 99 1.272212 CGGGAAAATTGACCCACTTGG 59.728 52.381 16.95 0.00 45.83 3.61
109 110 2.169832 CCCACTTGGTAGACACACTG 57.830 55.000 0.00 0.00 0.00 3.66
110 111 1.512926 CCACTTGGTAGACACACTGC 58.487 55.000 0.00 0.00 0.00 4.40
111 112 1.202639 CCACTTGGTAGACACACTGCA 60.203 52.381 0.00 0.00 32.90 4.41
112 113 2.138320 CACTTGGTAGACACACTGCAG 58.862 52.381 13.48 13.48 32.90 4.41
113 114 1.070758 ACTTGGTAGACACACTGCAGG 59.929 52.381 19.93 9.66 32.90 4.85
114 115 0.250295 TTGGTAGACACACTGCAGGC 60.250 55.000 19.93 1.69 32.90 4.85
115 116 1.121407 TGGTAGACACACTGCAGGCT 61.121 55.000 19.93 9.32 32.90 4.58
116 117 0.895530 GGTAGACACACTGCAGGCTA 59.104 55.000 19.93 8.35 32.90 3.93
117 118 1.482593 GGTAGACACACTGCAGGCTAT 59.517 52.381 19.93 0.00 32.90 2.97
118 119 2.544685 GTAGACACACTGCAGGCTATG 58.455 52.381 19.93 9.67 0.00 2.23
130 131 2.130395 CAGGCTATGCAGACATACACG 58.870 52.381 0.00 0.00 37.74 4.49
131 132 1.757118 AGGCTATGCAGACATACACGT 59.243 47.619 0.00 0.00 37.74 4.49
132 133 2.956333 AGGCTATGCAGACATACACGTA 59.044 45.455 0.00 0.00 37.74 3.57
133 134 3.050619 GGCTATGCAGACATACACGTAC 58.949 50.000 0.00 0.00 37.74 3.67
134 135 2.719556 GCTATGCAGACATACACGTACG 59.280 50.000 15.01 15.01 37.74 3.67
135 136 2.203800 ATGCAGACATACACGTACGG 57.796 50.000 21.06 11.05 33.67 4.02
136 137 1.166989 TGCAGACATACACGTACGGA 58.833 50.000 21.06 4.64 0.00 4.69
137 138 1.540707 TGCAGACATACACGTACGGAA 59.459 47.619 21.06 4.49 0.00 4.30
138 139 2.182825 GCAGACATACACGTACGGAAG 58.817 52.381 21.06 11.42 0.00 3.46
139 140 2.793933 CAGACATACACGTACGGAAGG 58.206 52.381 21.06 8.45 0.00 3.46
140 141 2.421073 CAGACATACACGTACGGAAGGA 59.579 50.000 21.06 6.10 0.00 3.36
141 142 3.084039 AGACATACACGTACGGAAGGAA 58.916 45.455 21.06 2.72 0.00 3.36
142 143 3.128242 AGACATACACGTACGGAAGGAAG 59.872 47.826 21.06 5.43 0.00 3.46
143 144 2.190981 CATACACGTACGGAAGGAAGC 58.809 52.381 21.06 0.00 0.00 3.86
144 145 1.246649 TACACGTACGGAAGGAAGCA 58.753 50.000 21.06 0.00 0.00 3.91
145 146 0.390124 ACACGTACGGAAGGAAGCAA 59.610 50.000 21.06 0.00 0.00 3.91
146 147 1.202557 ACACGTACGGAAGGAAGCAAA 60.203 47.619 21.06 0.00 0.00 3.68
147 148 1.868498 CACGTACGGAAGGAAGCAAAA 59.132 47.619 21.06 0.00 0.00 2.44
148 149 2.288458 CACGTACGGAAGGAAGCAAAAA 59.712 45.455 21.06 0.00 0.00 1.94
174 175 6.892310 ATCAAAATGAGAAAATAAAGCGGC 57.108 33.333 0.00 0.00 0.00 6.53
175 176 5.777802 TCAAAATGAGAAAATAAAGCGGCA 58.222 33.333 1.45 0.00 0.00 5.69
176 177 6.219473 TCAAAATGAGAAAATAAAGCGGCAA 58.781 32.000 1.45 0.00 0.00 4.52
177 178 6.145371 TCAAAATGAGAAAATAAAGCGGCAAC 59.855 34.615 1.45 0.00 0.00 4.17
178 179 3.569250 TGAGAAAATAAAGCGGCAACC 57.431 42.857 1.45 0.00 0.00 3.77
179 180 2.887783 TGAGAAAATAAAGCGGCAACCA 59.112 40.909 1.45 0.00 0.00 3.67
180 181 3.509575 TGAGAAAATAAAGCGGCAACCAT 59.490 39.130 1.45 0.00 0.00 3.55
181 182 4.702612 TGAGAAAATAAAGCGGCAACCATA 59.297 37.500 1.45 0.00 0.00 2.74
182 183 4.993905 AGAAAATAAAGCGGCAACCATAC 58.006 39.130 1.45 0.00 0.00 2.39
183 184 4.705023 AGAAAATAAAGCGGCAACCATACT 59.295 37.500 1.45 0.00 0.00 2.12
184 185 4.632538 AAATAAAGCGGCAACCATACTC 57.367 40.909 1.45 0.00 0.00 2.59
185 186 2.772077 TAAAGCGGCAACCATACTCA 57.228 45.000 1.45 0.00 0.00 3.41
186 187 1.453155 AAAGCGGCAACCATACTCAG 58.547 50.000 1.45 0.00 0.00 3.35
187 188 1.026718 AAGCGGCAACCATACTCAGC 61.027 55.000 1.45 0.00 0.00 4.26
188 189 2.472909 GCGGCAACCATACTCAGCC 61.473 63.158 0.00 0.00 41.86 4.85
189 190 1.078497 CGGCAACCATACTCAGCCA 60.078 57.895 0.00 0.00 45.47 4.75
190 191 0.676466 CGGCAACCATACTCAGCCAA 60.676 55.000 0.00 0.00 45.47 4.52
191 192 0.811281 GGCAACCATACTCAGCCAAC 59.189 55.000 0.00 0.00 44.59 3.77
192 193 0.811281 GCAACCATACTCAGCCAACC 59.189 55.000 0.00 0.00 0.00 3.77
193 194 1.886222 GCAACCATACTCAGCCAACCA 60.886 52.381 0.00 0.00 0.00 3.67
194 195 1.812571 CAACCATACTCAGCCAACCAC 59.187 52.381 0.00 0.00 0.00 4.16
195 196 1.064003 ACCATACTCAGCCAACCACA 58.936 50.000 0.00 0.00 0.00 4.17
196 197 1.423541 ACCATACTCAGCCAACCACAA 59.576 47.619 0.00 0.00 0.00 3.33
197 198 2.158534 ACCATACTCAGCCAACCACAAA 60.159 45.455 0.00 0.00 0.00 2.83
198 199 2.489329 CCATACTCAGCCAACCACAAAG 59.511 50.000 0.00 0.00 0.00 2.77
199 200 3.411446 CATACTCAGCCAACCACAAAGA 58.589 45.455 0.00 0.00 0.00 2.52
200 201 1.972872 ACTCAGCCAACCACAAAGAG 58.027 50.000 0.00 0.00 0.00 2.85
201 202 0.595095 CTCAGCCAACCACAAAGAGC 59.405 55.000 0.00 0.00 0.00 4.09
202 203 0.823356 TCAGCCAACCACAAAGAGCC 60.823 55.000 0.00 0.00 0.00 4.70
203 204 1.108727 CAGCCAACCACAAAGAGCCA 61.109 55.000 0.00 0.00 0.00 4.75
204 205 0.396974 AGCCAACCACAAAGAGCCAA 60.397 50.000 0.00 0.00 0.00 4.52
205 206 0.032540 GCCAACCACAAAGAGCCAAG 59.967 55.000 0.00 0.00 0.00 3.61
206 207 1.691196 CCAACCACAAAGAGCCAAGA 58.309 50.000 0.00 0.00 0.00 3.02
207 208 2.031120 CCAACCACAAAGAGCCAAGAA 58.969 47.619 0.00 0.00 0.00 2.52
208 209 2.629617 CCAACCACAAAGAGCCAAGAAT 59.370 45.455 0.00 0.00 0.00 2.40
209 210 3.070015 CCAACCACAAAGAGCCAAGAATT 59.930 43.478 0.00 0.00 0.00 2.17
210 211 4.280677 CCAACCACAAAGAGCCAAGAATTA 59.719 41.667 0.00 0.00 0.00 1.40
211 212 5.222631 CAACCACAAAGAGCCAAGAATTAC 58.777 41.667 0.00 0.00 0.00 1.89
212 213 3.502211 ACCACAAAGAGCCAAGAATTACG 59.498 43.478 0.00 0.00 0.00 3.18
213 214 3.502211 CCACAAAGAGCCAAGAATTACGT 59.498 43.478 0.00 0.00 0.00 3.57
214 215 4.466828 CACAAAGAGCCAAGAATTACGTG 58.533 43.478 0.00 0.00 0.00 4.49
216 217 2.403252 AGAGCCAAGAATTACGTGGG 57.597 50.000 0.00 0.00 45.77 4.61
217 218 0.733150 GAGCCAAGAATTACGTGGGC 59.267 55.000 0.00 0.00 45.77 5.36
218 219 0.037590 AGCCAAGAATTACGTGGGCA 59.962 50.000 0.00 0.00 45.77 5.36
219 220 0.885196 GCCAAGAATTACGTGGGCAA 59.115 50.000 0.00 0.00 45.77 4.52
220 221 1.271102 GCCAAGAATTACGTGGGCAAA 59.729 47.619 0.00 0.00 45.77 3.68
221 222 2.094234 GCCAAGAATTACGTGGGCAAAT 60.094 45.455 0.00 0.00 45.77 2.32
222 223 3.769536 CCAAGAATTACGTGGGCAAATC 58.230 45.455 0.00 0.00 42.83 2.17
223 224 3.425404 CAAGAATTACGTGGGCAAATCG 58.575 45.455 0.00 0.00 0.00 3.34
224 225 2.014128 AGAATTACGTGGGCAAATCGG 58.986 47.619 0.00 0.00 0.00 4.18
225 226 0.454196 AATTACGTGGGCAAATCGGC 59.546 50.000 0.00 0.00 40.20 5.54
226 227 1.711060 ATTACGTGGGCAAATCGGCG 61.711 55.000 0.00 0.00 42.43 6.46
227 228 2.783241 TTACGTGGGCAAATCGGCGA 62.783 55.000 13.87 13.87 42.43 5.54
228 229 4.160635 CGTGGGCAAATCGGCGAC 62.161 66.667 13.76 0.00 44.22 5.19
229 230 2.746277 GTGGGCAAATCGGCGACT 60.746 61.111 13.76 0.00 44.27 4.18
230 231 2.745884 TGGGCAAATCGGCGACTG 60.746 61.111 13.76 14.31 42.43 3.51
231 232 4.179579 GGGCAAATCGGCGACTGC 62.180 66.667 28.28 28.28 42.43 4.40
232 233 3.430862 GGCAAATCGGCGACTGCA 61.431 61.111 33.34 7.82 45.35 4.41
233 234 2.764314 GGCAAATCGGCGACTGCAT 61.764 57.895 33.34 10.69 45.35 3.96
234 235 1.584483 GCAAATCGGCGACTGCATG 60.584 57.895 30.09 18.34 45.35 4.06
235 236 1.584483 CAAATCGGCGACTGCATGC 60.584 57.895 13.76 11.82 45.35 4.06
236 237 2.039974 AAATCGGCGACTGCATGCA 61.040 52.632 21.29 21.29 45.35 3.96
238 239 2.857575 AATCGGCGACTGCATGCAGA 62.858 55.000 45.50 27.43 46.30 4.26
239 240 3.857854 CGGCGACTGCATGCAGAC 61.858 66.667 45.50 38.38 46.30 3.51
240 241 3.503363 GGCGACTGCATGCAGACC 61.503 66.667 45.50 36.50 46.30 3.85
241 242 2.743538 GCGACTGCATGCAGACCA 60.744 61.111 45.50 14.59 46.30 4.02
242 243 3.031964 GCGACTGCATGCAGACCAC 62.032 63.158 45.50 30.41 46.30 4.16
243 244 2.733671 CGACTGCATGCAGACCACG 61.734 63.158 45.50 35.59 46.30 4.94
244 245 3.031964 GACTGCATGCAGACCACGC 62.032 63.158 45.50 25.20 46.30 5.34
245 246 3.051479 CTGCATGCAGACCACGCA 61.051 61.111 38.90 5.03 46.30 5.24
250 251 4.678499 TGCAGACCACGCATGCGA 62.678 61.111 43.72 18.43 42.92 5.10
251 252 3.857854 GCAGACCACGCATGCGAG 61.858 66.667 43.72 35.43 42.83 5.03
252 253 3.857854 CAGACCACGCATGCGAGC 61.858 66.667 43.72 27.29 42.83 5.03
256 257 3.511595 CCACGCATGCGAGCCAAT 61.512 61.111 43.72 20.03 42.83 3.16
257 258 2.277692 CACGCATGCGAGCCAATG 60.278 61.111 43.72 26.93 42.83 2.82
258 259 3.511595 ACGCATGCGAGCCAATGG 61.512 61.111 43.72 14.37 42.83 3.16
259 260 3.204119 CGCATGCGAGCCAATGGA 61.204 61.111 35.82 0.00 42.83 3.41
260 261 2.763273 CGCATGCGAGCCAATGGAA 61.763 57.895 35.82 0.00 42.83 3.53
261 262 1.512230 GCATGCGAGCCAATGGAAA 59.488 52.632 2.05 0.00 0.00 3.13
262 263 0.803380 GCATGCGAGCCAATGGAAAC 60.803 55.000 2.05 0.00 0.00 2.78
273 274 2.636462 TGGAAACACGCGCACATG 59.364 55.556 5.73 4.80 33.40 3.21
274 275 2.800746 GGAAACACGCGCACATGC 60.801 61.111 5.73 0.00 37.78 4.06
275 276 2.252260 GAAACACGCGCACATGCT 59.748 55.556 5.73 0.00 39.32 3.79
276 277 2.051076 AAACACGCGCACATGCTG 60.051 55.556 5.73 0.00 39.32 4.41
277 278 4.688419 AACACGCGCACATGCTGC 62.688 61.111 5.73 9.41 43.21 5.25
281 282 4.485834 CGCGCACATGCTGCCAAT 62.486 61.111 8.75 0.00 43.84 3.16
282 283 2.800053 GCGCACATGCTGCCAATA 59.200 55.556 0.30 0.00 43.84 1.90
283 284 1.587088 GCGCACATGCTGCCAATAC 60.587 57.895 0.30 0.00 43.84 1.89
284 285 1.064621 CGCACATGCTGCCAATACC 59.935 57.895 12.62 0.00 43.84 2.73
285 286 1.655885 CGCACATGCTGCCAATACCA 61.656 55.000 12.62 0.00 43.84 3.25
286 287 0.531657 GCACATGCTGCCAATACCAA 59.468 50.000 8.54 0.00 40.42 3.67
287 288 1.067000 GCACATGCTGCCAATACCAAA 60.067 47.619 8.54 0.00 40.42 3.28
288 289 2.609350 CACATGCTGCCAATACCAAAC 58.391 47.619 0.00 0.00 0.00 2.93
289 290 2.231964 CACATGCTGCCAATACCAAACT 59.768 45.455 0.00 0.00 0.00 2.66
290 291 2.231964 ACATGCTGCCAATACCAAACTG 59.768 45.455 0.00 0.00 0.00 3.16
291 292 2.284754 TGCTGCCAATACCAAACTGA 57.715 45.000 0.00 0.00 0.00 3.41
292 293 2.591923 TGCTGCCAATACCAAACTGAA 58.408 42.857 0.00 0.00 0.00 3.02
293 294 2.557924 TGCTGCCAATACCAAACTGAAG 59.442 45.455 0.00 0.00 0.00 3.02
294 295 2.558359 GCTGCCAATACCAAACTGAAGT 59.442 45.455 0.00 0.00 0.00 3.01
295 296 3.756434 GCTGCCAATACCAAACTGAAGTA 59.244 43.478 0.00 0.00 0.00 2.24
296 297 4.142600 GCTGCCAATACCAAACTGAAGTAG 60.143 45.833 0.00 0.00 0.00 2.57
297 298 5.235850 TGCCAATACCAAACTGAAGTAGA 57.764 39.130 0.00 0.00 0.00 2.59
298 299 5.626142 TGCCAATACCAAACTGAAGTAGAA 58.374 37.500 0.00 0.00 0.00 2.10
299 300 6.245408 TGCCAATACCAAACTGAAGTAGAAT 58.755 36.000 0.00 0.00 0.00 2.40
300 301 6.719370 TGCCAATACCAAACTGAAGTAGAATT 59.281 34.615 0.00 0.00 0.00 2.17
301 302 7.094377 TGCCAATACCAAACTGAAGTAGAATTC 60.094 37.037 0.00 0.00 0.00 2.17
302 303 7.121315 GCCAATACCAAACTGAAGTAGAATTCT 59.879 37.037 13.56 13.56 0.00 2.40
303 304 8.669243 CCAATACCAAACTGAAGTAGAATTCTC 58.331 37.037 12.24 4.08 0.00 2.87
304 305 9.219603 CAATACCAAACTGAAGTAGAATTCTCA 57.780 33.333 12.24 3.01 0.00 3.27
305 306 9.442047 AATACCAAACTGAAGTAGAATTCTCAG 57.558 33.333 12.24 15.08 0.00 3.35
306 307 6.234177 ACCAAACTGAAGTAGAATTCTCAGG 58.766 40.000 20.42 10.37 0.00 3.86
307 308 5.645497 CCAAACTGAAGTAGAATTCTCAGGG 59.355 44.000 20.42 11.88 0.00 4.45
308 309 6.234177 CAAACTGAAGTAGAATTCTCAGGGT 58.766 40.000 20.42 9.75 0.00 4.34
309 310 6.441088 AACTGAAGTAGAATTCTCAGGGTT 57.559 37.500 20.42 13.12 0.00 4.11
310 311 7.554959 AACTGAAGTAGAATTCTCAGGGTTA 57.445 36.000 20.42 0.00 0.00 2.85
311 312 7.554959 ACTGAAGTAGAATTCTCAGGGTTAA 57.445 36.000 20.42 0.00 0.00 2.01
312 313 8.152023 ACTGAAGTAGAATTCTCAGGGTTAAT 57.848 34.615 20.42 0.00 0.00 1.40
313 314 8.261522 ACTGAAGTAGAATTCTCAGGGTTAATC 58.738 37.037 20.42 7.16 0.00 1.75
314 315 7.265673 TGAAGTAGAATTCTCAGGGTTAATCG 58.734 38.462 12.24 0.00 0.00 3.34
315 316 5.602628 AGTAGAATTCTCAGGGTTAATCGC 58.397 41.667 12.24 0.00 0.00 4.58
316 317 4.762289 AGAATTCTCAGGGTTAATCGCT 57.238 40.909 0.88 0.00 40.00 4.93
317 318 5.871396 AGAATTCTCAGGGTTAATCGCTA 57.129 39.130 0.88 0.00 37.57 4.26
318 319 5.848406 AGAATTCTCAGGGTTAATCGCTAG 58.152 41.667 0.88 0.00 37.57 3.42
319 320 3.454371 TTCTCAGGGTTAATCGCTAGC 57.546 47.619 4.06 4.06 37.57 3.42
320 321 2.667470 TCTCAGGGTTAATCGCTAGCT 58.333 47.619 13.93 0.00 37.57 3.32
321 322 2.362397 TCTCAGGGTTAATCGCTAGCTG 59.638 50.000 13.93 6.69 37.57 4.24
322 323 1.202533 TCAGGGTTAATCGCTAGCTGC 60.203 52.381 13.93 0.00 37.57 5.25
323 324 0.830648 AGGGTTAATCGCTAGCTGCA 59.169 50.000 13.93 0.00 43.06 4.41
324 325 0.938008 GGGTTAATCGCTAGCTGCAC 59.062 55.000 13.93 2.22 43.06 4.57
325 326 1.651987 GGTTAATCGCTAGCTGCACA 58.348 50.000 13.93 0.00 43.06 4.57
326 327 2.213499 GGTTAATCGCTAGCTGCACAT 58.787 47.619 13.93 0.00 43.06 3.21
327 328 2.032549 GGTTAATCGCTAGCTGCACATG 60.033 50.000 13.93 0.00 43.06 3.21
328 329 1.869774 TAATCGCTAGCTGCACATGG 58.130 50.000 13.93 0.00 43.06 3.66
329 330 0.178767 AATCGCTAGCTGCACATGGA 59.821 50.000 13.93 0.00 43.06 3.41
330 331 0.395686 ATCGCTAGCTGCACATGGAT 59.604 50.000 13.93 2.38 43.06 3.41
331 332 0.531311 TCGCTAGCTGCACATGGATG 60.531 55.000 13.93 0.00 43.06 3.51
332 333 0.812811 CGCTAGCTGCACATGGATGT 60.813 55.000 13.93 0.00 43.06 3.06
341 342 3.153024 ACATGGATGTGTACCACGC 57.847 52.632 0.00 0.00 40.03 5.34
342 343 0.392461 ACATGGATGTGTACCACGCC 60.392 55.000 0.00 0.00 40.03 5.68
343 344 0.392327 CATGGATGTGTACCACGCCA 60.392 55.000 10.04 10.04 42.44 5.69
344 345 0.107703 ATGGATGTGTACCACGCCAG 60.108 55.000 12.30 0.00 41.88 4.85
345 346 1.449601 GGATGTGTACCACGCCAGG 60.450 63.158 0.00 0.00 37.14 4.45
346 347 1.295423 GATGTGTACCACGCCAGGT 59.705 57.895 0.00 0.00 45.72 4.00
347 348 0.739813 GATGTGTACCACGCCAGGTC 60.740 60.000 0.00 0.00 42.06 3.85
348 349 2.047560 GTGTACCACGCCAGGTCC 60.048 66.667 0.00 0.00 42.06 4.46
349 350 3.315949 TGTACCACGCCAGGTCCC 61.316 66.667 0.00 0.00 42.06 4.46
350 351 4.091939 GTACCACGCCAGGTCCCC 62.092 72.222 0.00 0.00 42.06 4.81
355 356 4.326227 ACGCCAGGTCCCCCAGTA 62.326 66.667 0.00 0.00 0.00 2.74
356 357 3.006728 CGCCAGGTCCCCCAGTAA 61.007 66.667 0.00 0.00 0.00 2.24
357 358 2.598787 CGCCAGGTCCCCCAGTAAA 61.599 63.158 0.00 0.00 0.00 2.01
358 359 1.303282 GCCAGGTCCCCCAGTAAAG 59.697 63.158 0.00 0.00 0.00 1.85
359 360 1.303282 CCAGGTCCCCCAGTAAAGC 59.697 63.158 0.00 0.00 0.00 3.51
360 361 1.497309 CCAGGTCCCCCAGTAAAGCA 61.497 60.000 0.00 0.00 0.00 3.91
361 362 0.322546 CAGGTCCCCCAGTAAAGCAC 60.323 60.000 0.00 0.00 0.00 4.40
362 363 1.376812 GGTCCCCCAGTAAAGCACG 60.377 63.158 0.00 0.00 0.00 5.34
363 364 1.373812 GTCCCCCAGTAAAGCACGT 59.626 57.895 0.00 0.00 0.00 4.49
364 365 0.953960 GTCCCCCAGTAAAGCACGTG 60.954 60.000 12.28 12.28 0.00 4.49
365 366 1.674322 CCCCCAGTAAAGCACGTGG 60.674 63.158 18.88 0.00 0.00 4.94
366 367 2.332654 CCCCAGTAAAGCACGTGGC 61.333 63.158 18.88 9.78 45.30 5.01
377 378 4.947147 ACGTGGCATGCACCGGTT 62.947 61.111 25.53 8.78 0.00 4.44
378 379 4.403137 CGTGGCATGCACCGGTTG 62.403 66.667 21.36 1.23 0.00 3.77
379 380 4.054825 GTGGCATGCACCGGTTGG 62.055 66.667 21.36 0.00 42.84 3.77
382 383 4.120331 GCATGCACCGGTTGGCTC 62.120 66.667 14.21 4.09 39.70 4.70
383 384 3.803082 CATGCACCGGTTGGCTCG 61.803 66.667 16.94 5.33 39.70 5.03
384 385 4.015406 ATGCACCGGTTGGCTCGA 62.015 61.111 16.94 0.00 39.70 4.04
385 386 3.329542 ATGCACCGGTTGGCTCGAT 62.330 57.895 16.94 1.00 39.70 3.59
386 387 2.746277 GCACCGGTTGGCTCGATT 60.746 61.111 2.97 0.00 39.70 3.34
387 388 2.332654 GCACCGGTTGGCTCGATTT 61.333 57.895 2.97 0.00 39.70 2.17
388 389 1.862602 GCACCGGTTGGCTCGATTTT 61.863 55.000 2.97 0.00 39.70 1.82
389 390 0.168128 CACCGGTTGGCTCGATTTTC 59.832 55.000 2.97 0.00 39.70 2.29
390 391 0.250553 ACCGGTTGGCTCGATTTTCA 60.251 50.000 0.00 0.00 39.70 2.69
391 392 0.168128 CCGGTTGGCTCGATTTTCAC 59.832 55.000 0.00 0.00 0.00 3.18
392 393 1.156736 CGGTTGGCTCGATTTTCACT 58.843 50.000 0.00 0.00 0.00 3.41
393 394 1.135972 CGGTTGGCTCGATTTTCACTG 60.136 52.381 0.00 0.00 0.00 3.66
394 395 2.151202 GGTTGGCTCGATTTTCACTGA 58.849 47.619 0.00 0.00 0.00 3.41
395 396 2.749621 GGTTGGCTCGATTTTCACTGAT 59.250 45.455 0.00 0.00 0.00 2.90
396 397 3.938963 GGTTGGCTCGATTTTCACTGATA 59.061 43.478 0.00 0.00 0.00 2.15
397 398 4.394920 GGTTGGCTCGATTTTCACTGATAA 59.605 41.667 0.00 0.00 0.00 1.75
398 399 5.447818 GGTTGGCTCGATTTTCACTGATAAG 60.448 44.000 0.00 0.00 0.00 1.73
399 400 5.084818 TGGCTCGATTTTCACTGATAAGA 57.915 39.130 0.00 0.00 0.00 2.10
400 401 5.487433 TGGCTCGATTTTCACTGATAAGAA 58.513 37.500 0.00 0.00 0.00 2.52
401 402 5.937540 TGGCTCGATTTTCACTGATAAGAAA 59.062 36.000 0.00 0.00 32.34 2.52
402 403 6.429692 TGGCTCGATTTTCACTGATAAGAAAA 59.570 34.615 0.00 0.00 44.80 2.29
403 404 7.040755 TGGCTCGATTTTCACTGATAAGAAAAA 60.041 33.333 0.00 0.00 44.15 1.94
404 405 7.271438 GGCTCGATTTTCACTGATAAGAAAAAC 59.729 37.037 0.00 0.00 44.15 2.43
405 406 8.017946 GCTCGATTTTCACTGATAAGAAAAACT 58.982 33.333 0.00 0.00 44.15 2.66
406 407 9.535270 CTCGATTTTCACTGATAAGAAAAACTC 57.465 33.333 0.00 0.00 44.15 3.01
407 408 9.051679 TCGATTTTCACTGATAAGAAAAACTCA 57.948 29.630 0.00 0.00 44.15 3.41
408 409 9.322776 CGATTTTCACTGATAAGAAAAACTCAG 57.677 33.333 0.00 0.00 44.15 3.35
415 416 9.787532 CACTGATAAGAAAAACTCAGAAAAACA 57.212 29.630 5.49 0.00 38.74 2.83
417 418 9.455847 CTGATAAGAAAAACTCAGAAAAACAGG 57.544 33.333 0.00 0.00 37.85 4.00
418 419 8.413229 TGATAAGAAAAACTCAGAAAAACAGGG 58.587 33.333 0.00 0.00 0.00 4.45
419 420 6.605471 AAGAAAAACTCAGAAAAACAGGGT 57.395 33.333 0.00 0.00 0.00 4.34
420 421 7.712204 AAGAAAAACTCAGAAAAACAGGGTA 57.288 32.000 0.00 0.00 0.00 3.69
421 422 7.712204 AGAAAAACTCAGAAAAACAGGGTAA 57.288 32.000 0.00 0.00 0.00 2.85
422 423 8.129496 AGAAAAACTCAGAAAAACAGGGTAAA 57.871 30.769 0.00 0.00 0.00 2.01
423 424 8.033038 AGAAAAACTCAGAAAAACAGGGTAAAC 58.967 33.333 0.00 0.00 0.00 2.01
424 425 7.476540 AAAACTCAGAAAAACAGGGTAAACT 57.523 32.000 0.00 0.00 0.00 2.66
425 426 8.584063 AAAACTCAGAAAAACAGGGTAAACTA 57.416 30.769 0.00 0.00 0.00 2.24
426 427 8.584063 AAACTCAGAAAAACAGGGTAAACTAA 57.416 30.769 0.00 0.00 0.00 2.24
427 428 8.584063 AACTCAGAAAAACAGGGTAAACTAAA 57.416 30.769 0.00 0.00 0.00 1.85
428 429 7.993101 ACTCAGAAAAACAGGGTAAACTAAAC 58.007 34.615 0.00 0.00 0.00 2.01
429 430 7.067859 ACTCAGAAAAACAGGGTAAACTAAACC 59.932 37.037 0.00 0.00 36.19 3.27
430 431 7.120716 TCAGAAAAACAGGGTAAACTAAACCT 58.879 34.615 0.00 0.00 37.18 3.50
431 432 8.273605 TCAGAAAAACAGGGTAAACTAAACCTA 58.726 33.333 0.00 0.00 37.18 3.08
432 433 8.565416 CAGAAAAACAGGGTAAACTAAACCTAG 58.435 37.037 0.00 0.00 37.18 3.02
433 434 6.889301 AAAACAGGGTAAACTAAACCTAGC 57.111 37.500 0.00 0.00 37.18 3.42
434 435 4.564782 ACAGGGTAAACTAAACCTAGCC 57.435 45.455 0.00 0.00 37.18 3.93
435 436 3.911894 ACAGGGTAAACTAAACCTAGCCA 59.088 43.478 0.00 0.00 35.97 4.75
436 437 4.019591 ACAGGGTAAACTAAACCTAGCCAG 60.020 45.833 0.00 0.00 35.97 4.85
453 454 8.418597 CCTAGCCAGGTTTAGTATATGTAGAA 57.581 38.462 0.00 0.00 37.15 2.10
454 455 9.036980 CCTAGCCAGGTTTAGTATATGTAGAAT 57.963 37.037 0.00 0.00 37.15 2.40
562 563 1.860950 CGTTGACTTGATAGGCCGATG 59.139 52.381 1.80 0.00 0.00 3.84
701 702 1.014044 TTGCAGATCGTGTTCTCGCC 61.014 55.000 0.00 0.00 0.00 5.54
839 840 2.526304 TTGAGTCGCAGCAGTAAACT 57.474 45.000 0.00 0.00 0.00 2.66
846 847 2.939756 TCGCAGCAGTAAACTCAACAAA 59.060 40.909 0.00 0.00 0.00 2.83
857 858 2.031870 ACTCAACAAAGGGAGCCAAAC 58.968 47.619 0.00 0.00 34.48 2.93
859 860 2.695147 CTCAACAAAGGGAGCCAAACTT 59.305 45.455 0.00 0.00 0.00 2.66
861 862 3.888930 TCAACAAAGGGAGCCAAACTTAG 59.111 43.478 0.00 0.00 0.00 2.18
864 865 2.206576 AAGGGAGCCAAACTTAGCAG 57.793 50.000 0.00 0.00 0.00 4.24
867 868 2.642807 AGGGAGCCAAACTTAGCAGTAA 59.357 45.455 0.00 0.00 30.68 2.24
868 869 3.073946 AGGGAGCCAAACTTAGCAGTAAA 59.926 43.478 0.00 0.00 30.68 2.01
870 871 3.440522 GGAGCCAAACTTAGCAGTAAAGG 59.559 47.826 0.00 0.00 30.68 3.11
871 872 2.820197 AGCCAAACTTAGCAGTAAAGGC 59.180 45.455 0.00 0.00 41.39 4.35
872 873 2.556622 GCCAAACTTAGCAGTAAAGGCA 59.443 45.455 0.00 0.00 41.04 4.75
873 874 3.366374 GCCAAACTTAGCAGTAAAGGCAG 60.366 47.826 0.00 0.00 41.04 4.85
875 876 2.859165 ACTTAGCAGTAAAGGCAGCA 57.141 45.000 0.00 0.00 0.00 4.41
876 877 2.704572 ACTTAGCAGTAAAGGCAGCAG 58.295 47.619 0.00 0.00 0.00 4.24
878 879 3.260884 ACTTAGCAGTAAAGGCAGCAGTA 59.739 43.478 0.00 0.00 0.00 2.74
946 997 6.004574 TGGTCTAGTAGGCTCATACTACATG 58.995 44.000 1.01 0.00 42.47 3.21
1115 1168 5.248640 ACAGGACATTACAGGTGATTTCTG 58.751 41.667 0.00 0.00 38.16 3.02
1188 1258 9.653287 GTATAGTACATTGCAATCCTAAGCATA 57.347 33.333 9.53 0.00 40.94 3.14
1199 1269 6.211515 CAATCCTAAGCATACTTGATTTGGC 58.788 40.000 0.58 0.00 41.83 4.52
1217 1287 1.265905 GGCAACTCGAAATCAAACCGT 59.734 47.619 0.00 0.00 0.00 4.83
1592 1680 9.988815 AATGTGTCATATAACATCTACTTCCTC 57.011 33.333 0.00 0.00 35.99 3.71
1593 1681 7.952671 TGTGTCATATAACATCTACTTCCTCC 58.047 38.462 0.00 0.00 0.00 4.30
1596 1684 7.287005 TGTCATATAACATCTACTTCCTCCGTT 59.713 37.037 0.00 0.00 0.00 4.44
1599 1687 3.103080 ACATCTACTTCCTCCGTTCCT 57.897 47.619 0.00 0.00 0.00 3.36
1600 1688 4.246712 ACATCTACTTCCTCCGTTCCTA 57.753 45.455 0.00 0.00 0.00 2.94
1604 1692 5.593679 TCTACTTCCTCCGTTCCTAAATG 57.406 43.478 0.00 0.00 0.00 2.32
1607 1695 5.340439 ACTTCCTCCGTTCCTAAATGTAG 57.660 43.478 0.00 0.00 0.00 2.74
1609 1697 3.716431 TCCTCCGTTCCTAAATGTAGGT 58.284 45.455 8.90 0.00 46.41 3.08
1610 1698 3.703052 TCCTCCGTTCCTAAATGTAGGTC 59.297 47.826 8.90 3.35 46.41 3.85
1611 1699 3.705072 CCTCCGTTCCTAAATGTAGGTCT 59.295 47.826 8.90 0.00 46.41 3.85
1612 1700 4.161754 CCTCCGTTCCTAAATGTAGGTCTT 59.838 45.833 8.90 0.00 46.41 3.01
1616 1704 7.678837 TCCGTTCCTAAATGTAGGTCTTTTTA 58.321 34.615 8.90 0.00 46.41 1.52
1618 1706 7.820872 CCGTTCCTAAATGTAGGTCTTTTTAGA 59.179 37.037 8.90 0.00 46.41 2.10
1619 1707 8.870879 CGTTCCTAAATGTAGGTCTTTTTAGAG 58.129 37.037 8.90 0.00 46.41 2.43
1626 1714 8.794335 AATGTAGGTCTTTTTAGAGATTCCAC 57.206 34.615 0.00 0.00 0.00 4.02
1627 1715 7.554959 TGTAGGTCTTTTTAGAGATTCCACT 57.445 36.000 0.00 0.00 0.00 4.00
1628 1716 8.660295 TGTAGGTCTTTTTAGAGATTCCACTA 57.340 34.615 0.00 0.00 0.00 2.74
1629 1717 8.529476 TGTAGGTCTTTTTAGAGATTCCACTAC 58.471 37.037 0.00 0.00 0.00 2.73
1630 1718 6.631962 AGGTCTTTTTAGAGATTCCACTACG 58.368 40.000 0.00 0.00 0.00 3.51
1631 1719 5.811100 GGTCTTTTTAGAGATTCCACTACGG 59.189 44.000 0.00 0.00 0.00 4.02
1632 1720 6.350780 GGTCTTTTTAGAGATTCCACTACGGA 60.351 42.308 0.00 0.00 44.40 4.69
1633 1721 6.530887 GTCTTTTTAGAGATTCCACTACGGAC 59.469 42.308 0.00 0.00 46.36 4.79
1634 1722 6.436532 TCTTTTTAGAGATTCCACTACGGACT 59.563 38.462 0.00 0.00 46.36 3.85
1635 1723 7.613022 TCTTTTTAGAGATTCCACTACGGACTA 59.387 37.037 0.00 0.00 46.36 2.59
1636 1724 6.690194 TTTAGAGATTCCACTACGGACTAC 57.310 41.667 0.00 0.00 46.36 2.73
1637 1725 4.232188 AGAGATTCCACTACGGACTACA 57.768 45.455 0.00 0.00 46.36 2.74
1638 1726 4.794334 AGAGATTCCACTACGGACTACAT 58.206 43.478 0.00 0.00 46.36 2.29
1639 1727 5.938279 AGAGATTCCACTACGGACTACATA 58.062 41.667 0.00 0.00 46.36 2.29
1640 1728 5.764192 AGAGATTCCACTACGGACTACATAC 59.236 44.000 0.00 0.00 46.36 2.39
1641 1729 4.514441 AGATTCCACTACGGACTACATACG 59.486 45.833 0.00 0.00 46.36 3.06
1642 1730 2.564771 TCCACTACGGACTACATACGG 58.435 52.381 0.00 0.00 39.64 4.02
1643 1731 2.170397 TCCACTACGGACTACATACGGA 59.830 50.000 0.00 0.00 39.64 4.69
1644 1732 2.547211 CCACTACGGACTACATACGGAG 59.453 54.545 0.00 0.00 43.89 4.63
1645 1733 2.032204 CACTACGGACTACATACGGAGC 60.032 54.545 0.00 0.00 42.12 4.70
1646 1734 2.216046 CTACGGACTACATACGGAGCA 58.784 52.381 0.00 0.00 31.15 4.26
1647 1735 1.466856 ACGGACTACATACGGAGCAA 58.533 50.000 0.00 0.00 0.00 3.91
1648 1736 1.820519 ACGGACTACATACGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
1649 1737 2.231964 ACGGACTACATACGGAGCAAAA 59.768 45.455 0.00 0.00 0.00 2.44
1650 1738 3.118884 ACGGACTACATACGGAGCAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
1651 1739 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
1652 1740 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
1653 1741 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
1654 1742 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1655 1743 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1656 1744 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1657 1745 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1658 1746 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1659 1747 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1660 1748 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1661 1749 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1662 1750 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1663 1751 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1664 1752 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1706 1794 6.869206 ACATCCCTATGTAGTTTGTAGTGT 57.131 37.500 0.00 0.00 44.66 3.55
1707 1795 7.966339 ACATCCCTATGTAGTTTGTAGTGTA 57.034 36.000 0.00 0.00 44.66 2.90
1708 1796 8.370266 ACATCCCTATGTAGTTTGTAGTGTAA 57.630 34.615 0.00 0.00 44.66 2.41
1709 1797 8.989131 ACATCCCTATGTAGTTTGTAGTGTAAT 58.011 33.333 0.00 0.00 44.66 1.89
1710 1798 9.477484 CATCCCTATGTAGTTTGTAGTGTAATC 57.523 37.037 0.00 0.00 0.00 1.75
1711 1799 8.834004 TCCCTATGTAGTTTGTAGTGTAATCT 57.166 34.615 0.00 0.00 0.00 2.40
1712 1800 8.910944 TCCCTATGTAGTTTGTAGTGTAATCTC 58.089 37.037 0.00 0.00 0.00 2.75
1713 1801 8.915036 CCCTATGTAGTTTGTAGTGTAATCTCT 58.085 37.037 0.00 0.00 0.00 3.10
1745 1833 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2114 2217 9.515020 TTTCTGCATTACTTAGTCAAAACTTTG 57.485 29.630 0.00 0.00 36.92 2.77
2357 2463 5.346822 GTCCAGCTCATACTTTGCAAATTTG 59.653 40.000 13.23 14.03 0.00 2.32
2398 2722 7.891183 ATACTCACGTATCTTATCATTTGCC 57.109 36.000 0.00 0.00 30.58 4.52
2596 3352 4.932799 TGGTTCAATGTGTAGACCATAACG 59.067 41.667 0.00 0.00 0.00 3.18
2801 3560 6.686484 ACTATCCAGGTATATCAACATGCA 57.314 37.500 0.00 0.00 29.97 3.96
2948 3715 8.478877 CCATAACTCTAGGTTCTTTAGTCACAT 58.521 37.037 0.55 0.00 39.17 3.21
3400 4187 4.423732 GCAATTCAGTTTGAACAGTGTGT 58.576 39.130 0.00 0.00 39.45 3.72
3656 4443 8.344098 TCATCATTTCTTTTTGGATTTTGTTGC 58.656 29.630 0.00 0.00 0.00 4.17
3805 4593 0.625849 AGCCCGAGAATGATTTGGGT 59.374 50.000 11.20 0.00 42.10 4.51
3826 4614 1.533625 GCAGTCACATAGCCCAACAA 58.466 50.000 0.00 0.00 0.00 2.83
3847 4635 2.581354 GAGAGCGGTGGTCAGCAT 59.419 61.111 0.00 0.00 37.23 3.79
3848 4636 1.812922 GAGAGCGGTGGTCAGCATG 60.813 63.158 0.00 0.00 37.23 4.06
3862 4650 4.568152 TCAGCATGAATCATGAAGCATG 57.432 40.909 25.77 25.29 45.97 4.06
3863 4651 3.951680 TCAGCATGAATCATGAAGCATGT 59.048 39.130 25.77 18.20 45.97 3.21
3864 4652 4.044426 CAGCATGAATCATGAAGCATGTG 58.956 43.478 25.77 22.48 43.81 3.21
3865 4653 3.699538 AGCATGAATCATGAAGCATGTGT 59.300 39.130 25.77 18.93 43.81 3.72
3866 4654 4.159693 AGCATGAATCATGAAGCATGTGTT 59.840 37.500 25.77 17.75 43.81 3.32
3867 4655 4.267690 GCATGAATCATGAAGCATGTGTTG 59.732 41.667 25.77 14.29 43.81 3.33
3868 4656 4.443913 TGAATCATGAAGCATGTGTTGG 57.556 40.909 0.00 0.00 41.98 3.77
3869 4657 3.827876 TGAATCATGAAGCATGTGTTGGT 59.172 39.130 0.00 0.00 41.98 3.67
3870 4658 4.082625 TGAATCATGAAGCATGTGTTGGTC 60.083 41.667 0.00 0.00 41.98 4.02
3871 4659 3.144657 TCATGAAGCATGTGTTGGTCT 57.855 42.857 7.23 0.00 41.98 3.85
3872 4660 3.076621 TCATGAAGCATGTGTTGGTCTC 58.923 45.455 7.23 0.00 41.98 3.36
3873 4661 2.636647 TGAAGCATGTGTTGGTCTCA 57.363 45.000 0.00 0.00 34.16 3.27
3874 4662 3.144657 TGAAGCATGTGTTGGTCTCAT 57.855 42.857 0.00 0.00 34.16 2.90
3875 4663 3.489355 TGAAGCATGTGTTGGTCTCATT 58.511 40.909 0.00 0.00 34.16 2.57
3876 4664 3.890756 TGAAGCATGTGTTGGTCTCATTT 59.109 39.130 0.00 0.00 34.16 2.32
3877 4665 4.341806 TGAAGCATGTGTTGGTCTCATTTT 59.658 37.500 0.00 0.00 34.16 1.82
3878 4666 4.510038 AGCATGTGTTGGTCTCATTTTC 57.490 40.909 0.00 0.00 0.00 2.29
3879 4667 4.147321 AGCATGTGTTGGTCTCATTTTCT 58.853 39.130 0.00 0.00 0.00 2.52
3880 4668 4.217118 AGCATGTGTTGGTCTCATTTTCTC 59.783 41.667 0.00 0.00 0.00 2.87
3881 4669 4.022935 GCATGTGTTGGTCTCATTTTCTCA 60.023 41.667 0.00 0.00 0.00 3.27
3882 4670 5.507817 GCATGTGTTGGTCTCATTTTCTCAA 60.508 40.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.481112 CCTTTCCATGCCGTGCGC 62.481 66.667 0.00 0.00 38.31 6.09
4 5 1.656818 ATTCCTTTCCATGCCGTGCG 61.657 55.000 0.00 0.00 0.00 5.34
5 6 0.101219 GATTCCTTTCCATGCCGTGC 59.899 55.000 0.00 0.00 0.00 5.34
6 7 0.740737 GGATTCCTTTCCATGCCGTG 59.259 55.000 0.00 0.00 35.72 4.94
7 8 0.331278 TGGATTCCTTTCCATGCCGT 59.669 50.000 3.95 0.00 40.90 5.68
8 9 1.473258 TTGGATTCCTTTCCATGCCG 58.527 50.000 3.95 0.00 45.08 5.69
9 10 3.979101 TTTTGGATTCCTTTCCATGCC 57.021 42.857 3.95 0.00 45.08 4.40
10 11 4.114794 CGATTTTGGATTCCTTTCCATGC 58.885 43.478 3.95 0.00 45.08 4.06
11 12 5.581126 TCGATTTTGGATTCCTTTCCATG 57.419 39.130 3.95 0.00 45.08 3.66
12 13 6.014669 TGTTTCGATTTTGGATTCCTTTCCAT 60.015 34.615 3.95 0.00 45.08 3.41
13 14 5.303078 TGTTTCGATTTTGGATTCCTTTCCA 59.697 36.000 3.95 0.00 44.08 3.53
14 15 5.778862 TGTTTCGATTTTGGATTCCTTTCC 58.221 37.500 3.95 0.00 36.24 3.13
15 16 6.145534 GGTTGTTTCGATTTTGGATTCCTTTC 59.854 38.462 3.95 0.00 0.00 2.62
16 17 5.989168 GGTTGTTTCGATTTTGGATTCCTTT 59.011 36.000 3.95 0.00 0.00 3.11
17 18 5.069781 TGGTTGTTTCGATTTTGGATTCCTT 59.930 36.000 3.95 0.00 0.00 3.36
18 19 4.586841 TGGTTGTTTCGATTTTGGATTCCT 59.413 37.500 3.95 0.00 0.00 3.36
19 20 4.684242 GTGGTTGTTTCGATTTTGGATTCC 59.316 41.667 0.00 0.00 0.00 3.01
20 21 4.684242 GGTGGTTGTTTCGATTTTGGATTC 59.316 41.667 0.00 0.00 0.00 2.52
21 22 4.100189 TGGTGGTTGTTTCGATTTTGGATT 59.900 37.500 0.00 0.00 0.00 3.01
22 23 3.639094 TGGTGGTTGTTTCGATTTTGGAT 59.361 39.130 0.00 0.00 0.00 3.41
23 24 3.024547 TGGTGGTTGTTTCGATTTTGGA 58.975 40.909 0.00 0.00 0.00 3.53
24 25 3.444703 TGGTGGTTGTTTCGATTTTGG 57.555 42.857 0.00 0.00 0.00 3.28
25 26 3.241784 CGTTGGTGGTTGTTTCGATTTTG 59.758 43.478 0.00 0.00 0.00 2.44
26 27 3.119424 ACGTTGGTGGTTGTTTCGATTTT 60.119 39.130 0.00 0.00 0.00 1.82
27 28 2.424246 ACGTTGGTGGTTGTTTCGATTT 59.576 40.909 0.00 0.00 0.00 2.17
28 29 2.018515 ACGTTGGTGGTTGTTTCGATT 58.981 42.857 0.00 0.00 0.00 3.34
29 30 1.332375 CACGTTGGTGGTTGTTTCGAT 59.668 47.619 0.00 0.00 40.58 3.59
30 31 0.727970 CACGTTGGTGGTTGTTTCGA 59.272 50.000 0.00 0.00 40.58 3.71
31 32 3.228085 CACGTTGGTGGTTGTTTCG 57.772 52.632 0.00 0.00 40.58 3.46
40 41 2.635443 GGGGAATGCCACGTTGGTG 61.635 63.158 0.00 0.00 40.46 4.17
41 42 2.282887 GGGGAATGCCACGTTGGT 60.283 61.111 0.00 0.00 40.46 3.67
42 43 1.905843 TTGGGGAATGCCACGTTGG 60.906 57.895 0.00 0.00 42.06 3.77
43 44 1.288752 GTTGGGGAATGCCACGTTG 59.711 57.895 0.00 0.00 42.06 4.10
44 45 1.152652 TGTTGGGGAATGCCACGTT 60.153 52.632 0.00 0.00 42.06 3.99
45 46 1.901464 GTGTTGGGGAATGCCACGT 60.901 57.895 0.00 0.00 42.06 4.49
46 47 1.459455 TTGTGTTGGGGAATGCCACG 61.459 55.000 0.00 0.00 42.06 4.94
47 48 0.033366 GTTGTGTTGGGGAATGCCAC 59.967 55.000 0.00 0.00 38.42 5.01
48 49 0.397675 TGTTGTGTTGGGGAATGCCA 60.398 50.000 0.00 0.00 35.15 4.92
49 50 0.318120 CTGTTGTGTTGGGGAATGCC 59.682 55.000 0.00 0.00 0.00 4.40
50 51 0.319813 GCTGTTGTGTTGGGGAATGC 60.320 55.000 0.00 0.00 0.00 3.56
51 52 1.039068 TGCTGTTGTGTTGGGGAATG 58.961 50.000 0.00 0.00 0.00 2.67
52 53 1.688197 CTTGCTGTTGTGTTGGGGAAT 59.312 47.619 0.00 0.00 0.00 3.01
53 54 1.110442 CTTGCTGTTGTGTTGGGGAA 58.890 50.000 0.00 0.00 0.00 3.97
54 55 0.257328 TCTTGCTGTTGTGTTGGGGA 59.743 50.000 0.00 0.00 0.00 4.81
55 56 0.385390 GTCTTGCTGTTGTGTTGGGG 59.615 55.000 0.00 0.00 0.00 4.96
56 57 0.385390 GGTCTTGCTGTTGTGTTGGG 59.615 55.000 0.00 0.00 0.00 4.12
57 58 0.029300 CGGTCTTGCTGTTGTGTTGG 59.971 55.000 0.00 0.00 0.00 3.77
58 59 0.029300 CCGGTCTTGCTGTTGTGTTG 59.971 55.000 0.00 0.00 0.00 3.33
59 60 1.724582 GCCGGTCTTGCTGTTGTGTT 61.725 55.000 1.90 0.00 0.00 3.32
60 61 2.186826 GCCGGTCTTGCTGTTGTGT 61.187 57.895 1.90 0.00 0.00 3.72
61 62 2.639286 GCCGGTCTTGCTGTTGTG 59.361 61.111 1.90 0.00 0.00 3.33
62 63 2.972505 CGCCGGTCTTGCTGTTGT 60.973 61.111 1.90 0.00 0.00 3.32
63 64 3.726517 CCGCCGGTCTTGCTGTTG 61.727 66.667 1.90 0.00 0.00 3.33
66 67 4.697756 TTCCCGCCGGTCTTGCTG 62.698 66.667 1.90 0.00 0.00 4.41
67 68 2.764637 ATTTTCCCGCCGGTCTTGCT 62.765 55.000 1.90 0.00 0.00 3.91
68 69 1.873270 AATTTTCCCGCCGGTCTTGC 61.873 55.000 1.90 0.00 0.00 4.01
69 70 0.109319 CAATTTTCCCGCCGGTCTTG 60.109 55.000 1.90 0.00 0.00 3.02
70 71 0.250989 TCAATTTTCCCGCCGGTCTT 60.251 50.000 1.90 0.00 0.00 3.01
71 72 0.958876 GTCAATTTTCCCGCCGGTCT 60.959 55.000 1.90 0.00 0.00 3.85
72 73 1.504900 GTCAATTTTCCCGCCGGTC 59.495 57.895 1.90 0.00 0.00 4.79
73 74 1.974875 GGTCAATTTTCCCGCCGGT 60.975 57.895 1.90 0.00 0.00 5.28
74 75 2.706834 GGGTCAATTTTCCCGCCGG 61.707 63.158 0.00 0.00 33.97 6.13
75 76 1.974343 TGGGTCAATTTTCCCGCCG 60.974 57.895 9.37 0.00 46.13 6.46
76 77 1.589630 GTGGGTCAATTTTCCCGCC 59.410 57.895 14.16 3.74 45.54 6.13
78 79 1.272212 CCAAGTGGGTCAATTTTCCCG 59.728 52.381 9.37 0.00 46.13 5.14
90 91 1.878102 GCAGTGTGTCTACCAAGTGGG 60.878 57.143 1.69 0.00 44.81 4.61
91 92 1.202639 TGCAGTGTGTCTACCAAGTGG 60.203 52.381 0.00 0.00 42.17 4.00
92 93 2.138320 CTGCAGTGTGTCTACCAAGTG 58.862 52.381 5.25 0.00 0.00 3.16
93 94 1.070758 CCTGCAGTGTGTCTACCAAGT 59.929 52.381 13.81 0.00 0.00 3.16
94 95 1.800805 CCTGCAGTGTGTCTACCAAG 58.199 55.000 13.81 0.00 0.00 3.61
95 96 0.250295 GCCTGCAGTGTGTCTACCAA 60.250 55.000 13.81 0.00 0.00 3.67
96 97 1.121407 AGCCTGCAGTGTGTCTACCA 61.121 55.000 13.81 0.00 0.00 3.25
97 98 0.895530 TAGCCTGCAGTGTGTCTACC 59.104 55.000 13.81 0.00 0.00 3.18
98 99 2.544685 CATAGCCTGCAGTGTGTCTAC 58.455 52.381 13.81 0.00 0.00 2.59
99 100 2.967599 CATAGCCTGCAGTGTGTCTA 57.032 50.000 13.81 6.21 0.00 2.59
100 101 3.849002 CATAGCCTGCAGTGTGTCT 57.151 52.632 13.81 4.16 0.00 3.41
110 111 2.130395 CGTGTATGTCTGCATAGCCTG 58.870 52.381 0.00 0.00 38.17 4.85
111 112 1.757118 ACGTGTATGTCTGCATAGCCT 59.243 47.619 0.00 0.00 38.17 4.58
112 113 2.225068 ACGTGTATGTCTGCATAGCC 57.775 50.000 0.00 0.00 38.17 3.93
113 114 2.719556 CGTACGTGTATGTCTGCATAGC 59.280 50.000 7.22 0.00 38.17 2.97
114 115 3.002965 TCCGTACGTGTATGTCTGCATAG 59.997 47.826 15.21 0.00 38.17 2.23
115 116 2.944349 TCCGTACGTGTATGTCTGCATA 59.056 45.455 15.21 0.00 36.58 3.14
116 117 1.746787 TCCGTACGTGTATGTCTGCAT 59.253 47.619 15.21 0.00 39.03 3.96
117 118 1.166989 TCCGTACGTGTATGTCTGCA 58.833 50.000 15.21 0.00 0.00 4.41
118 119 2.182825 CTTCCGTACGTGTATGTCTGC 58.817 52.381 15.21 0.00 0.00 4.26
119 120 2.421073 TCCTTCCGTACGTGTATGTCTG 59.579 50.000 15.21 0.00 0.00 3.51
120 121 2.715046 TCCTTCCGTACGTGTATGTCT 58.285 47.619 15.21 0.00 0.00 3.41
121 122 3.432782 CTTCCTTCCGTACGTGTATGTC 58.567 50.000 15.21 0.00 0.00 3.06
122 123 2.416431 GCTTCCTTCCGTACGTGTATGT 60.416 50.000 15.21 0.00 0.00 2.29
123 124 2.190981 GCTTCCTTCCGTACGTGTATG 58.809 52.381 15.21 0.00 0.00 2.39
124 125 1.820519 TGCTTCCTTCCGTACGTGTAT 59.179 47.619 15.21 0.00 0.00 2.29
125 126 1.246649 TGCTTCCTTCCGTACGTGTA 58.753 50.000 15.21 0.00 0.00 2.90
126 127 0.390124 TTGCTTCCTTCCGTACGTGT 59.610 50.000 15.21 0.00 0.00 4.49
127 128 1.504359 TTTGCTTCCTTCCGTACGTG 58.496 50.000 15.21 5.96 0.00 4.49
128 129 2.243602 TTTTGCTTCCTTCCGTACGT 57.756 45.000 15.21 0.00 0.00 3.57
148 149 9.034544 GCCGCTTTATTTTCTCATTTTGATATT 57.965 29.630 0.00 0.00 0.00 1.28
149 150 8.196771 TGCCGCTTTATTTTCTCATTTTGATAT 58.803 29.630 0.00 0.00 0.00 1.63
150 151 7.542890 TGCCGCTTTATTTTCTCATTTTGATA 58.457 30.769 0.00 0.00 0.00 2.15
151 152 6.397272 TGCCGCTTTATTTTCTCATTTTGAT 58.603 32.000 0.00 0.00 0.00 2.57
152 153 5.777802 TGCCGCTTTATTTTCTCATTTTGA 58.222 33.333 0.00 0.00 0.00 2.69
153 154 6.298853 GTTGCCGCTTTATTTTCTCATTTTG 58.701 36.000 0.00 0.00 0.00 2.44
154 155 5.408299 GGTTGCCGCTTTATTTTCTCATTTT 59.592 36.000 0.00 0.00 0.00 1.82
155 156 4.929211 GGTTGCCGCTTTATTTTCTCATTT 59.071 37.500 0.00 0.00 0.00 2.32
156 157 4.021544 TGGTTGCCGCTTTATTTTCTCATT 60.022 37.500 0.00 0.00 0.00 2.57
157 158 3.509575 TGGTTGCCGCTTTATTTTCTCAT 59.490 39.130 0.00 0.00 0.00 2.90
158 159 2.887783 TGGTTGCCGCTTTATTTTCTCA 59.112 40.909 0.00 0.00 0.00 3.27
159 160 3.569250 TGGTTGCCGCTTTATTTTCTC 57.431 42.857 0.00 0.00 0.00 2.87
160 161 4.705023 AGTATGGTTGCCGCTTTATTTTCT 59.295 37.500 0.00 0.00 0.00 2.52
161 162 4.993905 AGTATGGTTGCCGCTTTATTTTC 58.006 39.130 0.00 0.00 0.00 2.29
162 163 4.461081 TGAGTATGGTTGCCGCTTTATTTT 59.539 37.500 0.00 0.00 0.00 1.82
163 164 4.013728 TGAGTATGGTTGCCGCTTTATTT 58.986 39.130 0.00 0.00 0.00 1.40
164 165 3.616219 TGAGTATGGTTGCCGCTTTATT 58.384 40.909 0.00 0.00 0.00 1.40
165 166 3.206150 CTGAGTATGGTTGCCGCTTTAT 58.794 45.455 0.00 0.00 0.00 1.40
166 167 2.627945 CTGAGTATGGTTGCCGCTTTA 58.372 47.619 0.00 0.00 0.00 1.85
167 168 1.453155 CTGAGTATGGTTGCCGCTTT 58.547 50.000 0.00 0.00 0.00 3.51
168 169 1.026718 GCTGAGTATGGTTGCCGCTT 61.027 55.000 0.00 0.00 0.00 4.68
169 170 1.450312 GCTGAGTATGGTTGCCGCT 60.450 57.895 0.00 0.00 0.00 5.52
170 171 2.472909 GGCTGAGTATGGTTGCCGC 61.473 63.158 0.00 0.00 33.96 6.53
171 172 0.676466 TTGGCTGAGTATGGTTGCCG 60.676 55.000 0.00 0.00 45.90 5.69
172 173 0.811281 GTTGGCTGAGTATGGTTGCC 59.189 55.000 0.00 0.00 43.49 4.52
173 174 0.811281 GGTTGGCTGAGTATGGTTGC 59.189 55.000 0.00 0.00 0.00 4.17
174 175 1.812571 GTGGTTGGCTGAGTATGGTTG 59.187 52.381 0.00 0.00 0.00 3.77
175 176 1.423541 TGTGGTTGGCTGAGTATGGTT 59.576 47.619 0.00 0.00 0.00 3.67
176 177 1.064003 TGTGGTTGGCTGAGTATGGT 58.936 50.000 0.00 0.00 0.00 3.55
177 178 2.198827 TTGTGGTTGGCTGAGTATGG 57.801 50.000 0.00 0.00 0.00 2.74
178 179 3.411446 TCTTTGTGGTTGGCTGAGTATG 58.589 45.455 0.00 0.00 0.00 2.39
179 180 3.679389 CTCTTTGTGGTTGGCTGAGTAT 58.321 45.455 0.00 0.00 0.00 2.12
180 181 2.810400 GCTCTTTGTGGTTGGCTGAGTA 60.810 50.000 0.00 0.00 0.00 2.59
181 182 1.972872 CTCTTTGTGGTTGGCTGAGT 58.027 50.000 0.00 0.00 0.00 3.41
182 183 0.595095 GCTCTTTGTGGTTGGCTGAG 59.405 55.000 0.00 0.00 0.00 3.35
183 184 0.823356 GGCTCTTTGTGGTTGGCTGA 60.823 55.000 0.00 0.00 0.00 4.26
184 185 1.108727 TGGCTCTTTGTGGTTGGCTG 61.109 55.000 0.00 0.00 0.00 4.85
185 186 0.396974 TTGGCTCTTTGTGGTTGGCT 60.397 50.000 0.00 0.00 0.00 4.75
186 187 0.032540 CTTGGCTCTTTGTGGTTGGC 59.967 55.000 0.00 0.00 0.00 4.52
187 188 1.691196 TCTTGGCTCTTTGTGGTTGG 58.309 50.000 0.00 0.00 0.00 3.77
188 189 4.326504 AATTCTTGGCTCTTTGTGGTTG 57.673 40.909 0.00 0.00 0.00 3.77
189 190 4.023193 CGTAATTCTTGGCTCTTTGTGGTT 60.023 41.667 0.00 0.00 0.00 3.67
190 191 3.502211 CGTAATTCTTGGCTCTTTGTGGT 59.498 43.478 0.00 0.00 0.00 4.16
191 192 3.502211 ACGTAATTCTTGGCTCTTTGTGG 59.498 43.478 0.00 0.00 0.00 4.17
192 193 4.466828 CACGTAATTCTTGGCTCTTTGTG 58.533 43.478 0.00 0.00 0.00 3.33
193 194 3.502211 CCACGTAATTCTTGGCTCTTTGT 59.498 43.478 0.00 0.00 0.00 2.83
194 195 3.119849 CCCACGTAATTCTTGGCTCTTTG 60.120 47.826 0.00 0.00 34.59 2.77
195 196 3.081804 CCCACGTAATTCTTGGCTCTTT 58.918 45.455 0.00 0.00 34.59 2.52
196 197 2.711542 CCCACGTAATTCTTGGCTCTT 58.288 47.619 0.00 0.00 34.59 2.85
197 198 1.679032 GCCCACGTAATTCTTGGCTCT 60.679 52.381 0.00 0.00 34.59 4.09
198 199 0.733150 GCCCACGTAATTCTTGGCTC 59.267 55.000 0.00 0.00 34.59 4.70
199 200 0.037590 TGCCCACGTAATTCTTGGCT 59.962 50.000 0.00 0.00 34.59 4.75
200 201 0.885196 TTGCCCACGTAATTCTTGGC 59.115 50.000 0.00 0.00 34.59 4.52
201 202 3.730662 CGATTTGCCCACGTAATTCTTGG 60.731 47.826 0.00 0.00 35.53 3.61
202 203 3.425404 CGATTTGCCCACGTAATTCTTG 58.575 45.455 0.00 0.00 0.00 3.02
203 204 2.422127 CCGATTTGCCCACGTAATTCTT 59.578 45.455 0.00 0.00 0.00 2.52
204 205 2.014128 CCGATTTGCCCACGTAATTCT 58.986 47.619 0.00 0.00 0.00 2.40
205 206 1.533129 GCCGATTTGCCCACGTAATTC 60.533 52.381 0.00 0.00 0.00 2.17
206 207 0.454196 GCCGATTTGCCCACGTAATT 59.546 50.000 0.00 0.00 0.00 1.40
207 208 1.711060 CGCCGATTTGCCCACGTAAT 61.711 55.000 0.00 0.00 0.00 1.89
208 209 2.392181 CGCCGATTTGCCCACGTAA 61.392 57.895 0.00 0.00 0.00 3.18
209 210 2.816083 CGCCGATTTGCCCACGTA 60.816 61.111 0.00 0.00 0.00 3.57
210 211 4.690719 TCGCCGATTTGCCCACGT 62.691 61.111 0.00 0.00 0.00 4.49
211 212 4.160635 GTCGCCGATTTGCCCACG 62.161 66.667 0.00 0.00 0.00 4.94
212 213 2.746277 AGTCGCCGATTTGCCCAC 60.746 61.111 0.00 0.00 0.00 4.61
213 214 2.745884 CAGTCGCCGATTTGCCCA 60.746 61.111 0.00 0.00 0.00 5.36
214 215 4.179579 GCAGTCGCCGATTTGCCC 62.180 66.667 13.49 0.00 0.00 5.36
215 216 2.764314 ATGCAGTCGCCGATTTGCC 61.764 57.895 19.29 6.58 37.32 4.52
216 217 1.584483 CATGCAGTCGCCGATTTGC 60.584 57.895 16.48 16.48 37.32 3.68
217 218 1.584483 GCATGCAGTCGCCGATTTG 60.584 57.895 14.21 0.00 37.32 2.32
218 219 1.985447 CTGCATGCAGTCGCCGATTT 61.985 55.000 34.76 0.00 39.10 2.17
219 220 2.436469 TGCATGCAGTCGCCGATT 60.436 55.556 18.46 0.00 37.32 3.34
220 221 2.893895 CTGCATGCAGTCGCCGAT 60.894 61.111 34.76 0.00 39.10 4.18
221 222 4.067913 TCTGCATGCAGTCGCCGA 62.068 61.111 39.08 21.87 43.96 5.54
222 223 3.857854 GTCTGCATGCAGTCGCCG 61.858 66.667 39.08 19.99 43.96 6.46
223 224 3.503363 GGTCTGCATGCAGTCGCC 61.503 66.667 39.08 32.99 43.96 5.54
224 225 2.743538 TGGTCTGCATGCAGTCGC 60.744 61.111 39.08 29.60 43.96 5.19
225 226 2.733671 CGTGGTCTGCATGCAGTCG 61.734 63.158 39.08 31.92 43.96 4.18
226 227 3.031964 GCGTGGTCTGCATGCAGTC 62.032 63.158 39.08 34.24 43.96 3.51
227 228 3.052082 GCGTGGTCTGCATGCAGT 61.052 61.111 39.08 0.00 43.96 4.40
228 229 3.051479 TGCGTGGTCTGCATGCAG 61.051 61.111 36.80 36.80 44.86 4.41
234 235 3.857854 CTCGCATGCGTGGTCTGC 61.858 66.667 36.50 0.00 40.74 4.26
235 236 3.857854 GCTCGCATGCGTGGTCTG 61.858 66.667 36.50 21.12 40.74 3.51
239 240 3.511595 ATTGGCTCGCATGCGTGG 61.512 61.111 36.50 29.11 40.74 4.94
240 241 2.277692 CATTGGCTCGCATGCGTG 60.278 61.111 36.50 33.98 40.74 5.34
241 242 3.511595 CCATTGGCTCGCATGCGT 61.512 61.111 36.50 16.33 40.74 5.24
242 243 2.268988 TTTCCATTGGCTCGCATGCG 62.269 55.000 33.61 33.61 41.35 4.73
243 244 0.803380 GTTTCCATTGGCTCGCATGC 60.803 55.000 7.91 7.91 0.00 4.06
244 245 0.527113 TGTTTCCATTGGCTCGCATG 59.473 50.000 0.00 0.00 0.00 4.06
245 246 0.527565 GTGTTTCCATTGGCTCGCAT 59.472 50.000 0.00 0.00 0.00 4.73
246 247 1.851021 CGTGTTTCCATTGGCTCGCA 61.851 55.000 0.00 0.00 0.00 5.10
247 248 1.154225 CGTGTTTCCATTGGCTCGC 60.154 57.895 0.00 0.00 0.00 5.03
248 249 1.154225 GCGTGTTTCCATTGGCTCG 60.154 57.895 0.00 0.00 0.00 5.03
249 250 1.154225 CGCGTGTTTCCATTGGCTC 60.154 57.895 0.00 0.00 0.00 4.70
250 251 2.953821 CGCGTGTTTCCATTGGCT 59.046 55.556 0.00 0.00 0.00 4.75
251 252 2.804931 GCGCGTGTTTCCATTGGC 60.805 61.111 8.43 0.00 0.00 4.52
252 253 1.729131 GTGCGCGTGTTTCCATTGG 60.729 57.895 8.43 0.00 0.00 3.16
253 254 0.387112 ATGTGCGCGTGTTTCCATTG 60.387 50.000 8.43 0.00 0.00 2.82
254 255 0.387112 CATGTGCGCGTGTTTCCATT 60.387 50.000 8.43 0.00 0.00 3.16
255 256 1.209898 CATGTGCGCGTGTTTCCAT 59.790 52.632 8.43 0.00 0.00 3.41
256 257 2.636462 CATGTGCGCGTGTTTCCA 59.364 55.556 8.43 0.00 0.00 3.53
257 258 2.800746 GCATGTGCGCGTGTTTCC 60.801 61.111 20.06 0.37 34.24 3.13
260 261 4.688419 GCAGCATGTGCGCGTGTT 62.688 61.111 20.06 12.16 43.99 3.32
268 269 2.231964 AGTTTGGTATTGGCAGCATGTG 59.768 45.455 0.00 0.00 39.31 3.21
269 270 2.231964 CAGTTTGGTATTGGCAGCATGT 59.768 45.455 0.00 0.00 39.31 3.21
270 271 2.492881 TCAGTTTGGTATTGGCAGCATG 59.507 45.455 0.00 0.00 40.87 4.06
271 272 2.806434 TCAGTTTGGTATTGGCAGCAT 58.194 42.857 0.00 0.00 0.00 3.79
272 273 2.284754 TCAGTTTGGTATTGGCAGCA 57.715 45.000 0.00 0.00 0.00 4.41
273 274 2.558359 ACTTCAGTTTGGTATTGGCAGC 59.442 45.455 0.00 0.00 0.00 5.25
274 275 5.245531 TCTACTTCAGTTTGGTATTGGCAG 58.754 41.667 0.00 0.00 0.00 4.85
275 276 5.235850 TCTACTTCAGTTTGGTATTGGCA 57.764 39.130 0.00 0.00 0.00 4.92
276 277 6.759497 ATTCTACTTCAGTTTGGTATTGGC 57.241 37.500 0.00 0.00 0.00 4.52
277 278 8.567285 AGAATTCTACTTCAGTTTGGTATTGG 57.433 34.615 6.06 0.00 0.00 3.16
278 279 9.219603 TGAGAATTCTACTTCAGTTTGGTATTG 57.780 33.333 8.25 0.00 0.00 1.90
279 280 9.442047 CTGAGAATTCTACTTCAGTTTGGTATT 57.558 33.333 8.25 0.00 0.00 1.89
280 281 8.043710 CCTGAGAATTCTACTTCAGTTTGGTAT 58.956 37.037 8.25 0.00 0.00 2.73
281 282 7.386851 CCTGAGAATTCTACTTCAGTTTGGTA 58.613 38.462 8.25 0.00 0.00 3.25
282 283 6.234177 CCTGAGAATTCTACTTCAGTTTGGT 58.766 40.000 8.25 0.00 0.00 3.67
283 284 5.645497 CCCTGAGAATTCTACTTCAGTTTGG 59.355 44.000 8.25 5.14 0.00 3.28
284 285 6.234177 ACCCTGAGAATTCTACTTCAGTTTG 58.766 40.000 8.25 5.42 0.00 2.93
285 286 6.441088 ACCCTGAGAATTCTACTTCAGTTT 57.559 37.500 8.25 0.00 0.00 2.66
286 287 6.441088 AACCCTGAGAATTCTACTTCAGTT 57.559 37.500 8.25 5.26 0.00 3.16
287 288 7.554959 TTAACCCTGAGAATTCTACTTCAGT 57.445 36.000 8.25 0.00 0.00 3.41
288 289 7.436673 CGATTAACCCTGAGAATTCTACTTCAG 59.563 40.741 8.25 11.26 0.00 3.02
289 290 7.265673 CGATTAACCCTGAGAATTCTACTTCA 58.734 38.462 8.25 1.32 0.00 3.02
290 291 6.201234 GCGATTAACCCTGAGAATTCTACTTC 59.799 42.308 8.25 0.00 0.00 3.01
291 292 6.049790 GCGATTAACCCTGAGAATTCTACTT 58.950 40.000 8.25 0.00 0.00 2.24
292 293 5.364157 AGCGATTAACCCTGAGAATTCTACT 59.636 40.000 8.25 0.00 0.00 2.57
293 294 5.602628 AGCGATTAACCCTGAGAATTCTAC 58.397 41.667 8.25 3.09 0.00 2.59
294 295 5.871396 AGCGATTAACCCTGAGAATTCTA 57.129 39.130 8.25 0.00 0.00 2.10
295 296 4.762289 AGCGATTAACCCTGAGAATTCT 57.238 40.909 7.95 7.95 0.00 2.40
296 297 4.449405 GCTAGCGATTAACCCTGAGAATTC 59.551 45.833 0.00 0.00 0.00 2.17
297 298 4.101741 AGCTAGCGATTAACCCTGAGAATT 59.898 41.667 9.55 0.00 0.00 2.17
298 299 3.643792 AGCTAGCGATTAACCCTGAGAAT 59.356 43.478 9.55 0.00 0.00 2.40
299 300 3.031736 AGCTAGCGATTAACCCTGAGAA 58.968 45.455 9.55 0.00 0.00 2.87
300 301 2.362397 CAGCTAGCGATTAACCCTGAGA 59.638 50.000 9.55 0.00 0.00 3.27
301 302 2.748605 CAGCTAGCGATTAACCCTGAG 58.251 52.381 9.55 0.00 0.00 3.35
302 303 1.202533 GCAGCTAGCGATTAACCCTGA 60.203 52.381 9.55 0.00 0.00 3.86
303 304 1.221414 GCAGCTAGCGATTAACCCTG 58.779 55.000 9.55 0.00 0.00 4.45
304 305 3.688553 GCAGCTAGCGATTAACCCT 57.311 52.632 9.55 0.00 0.00 4.34
314 315 3.091318 ACATCCATGTGCAGCTAGC 57.909 52.632 6.62 6.62 40.03 3.42
332 333 3.315949 GGGACCTGGCGTGGTACA 61.316 66.667 12.76 0.00 42.69 2.90
345 346 0.953960 CACGTGCTTTACTGGGGGAC 60.954 60.000 0.82 0.00 0.00 4.46
346 347 1.373435 CACGTGCTTTACTGGGGGA 59.627 57.895 0.82 0.00 0.00 4.81
347 348 1.674322 CCACGTGCTTTACTGGGGG 60.674 63.158 10.91 0.00 0.00 5.40
348 349 2.332654 GCCACGTGCTTTACTGGGG 61.333 63.158 10.91 0.00 36.87 4.96
349 350 0.960364 ATGCCACGTGCTTTACTGGG 60.960 55.000 10.91 0.00 42.00 4.45
350 351 0.168788 CATGCCACGTGCTTTACTGG 59.831 55.000 10.91 0.00 42.00 4.00
351 352 0.454957 GCATGCCACGTGCTTTACTG 60.455 55.000 10.91 2.45 42.00 2.74
352 353 0.888736 TGCATGCCACGTGCTTTACT 60.889 50.000 16.68 0.00 42.92 2.24
353 354 0.729140 GTGCATGCCACGTGCTTTAC 60.729 55.000 16.68 0.00 42.92 2.01
354 355 1.578926 GTGCATGCCACGTGCTTTA 59.421 52.632 16.68 0.00 42.92 1.85
355 356 2.336088 GTGCATGCCACGTGCTTT 59.664 55.556 16.68 0.00 42.92 3.51
356 357 3.673484 GGTGCATGCCACGTGCTT 61.673 61.111 16.68 1.24 45.62 3.91
360 361 4.947147 AACCGGTGCATGCCACGT 62.947 61.111 23.59 12.81 45.62 4.49
361 362 4.403137 CAACCGGTGCATGCCACG 62.403 66.667 16.68 18.80 45.62 4.94
362 363 4.054825 CCAACCGGTGCATGCCAC 62.055 66.667 16.68 13.06 43.90 5.01
365 366 4.120331 GAGCCAACCGGTGCATGC 62.120 66.667 18.19 11.82 33.28 4.06
366 367 3.803082 CGAGCCAACCGGTGCATG 61.803 66.667 18.19 8.66 33.28 4.06
367 368 2.819984 AATCGAGCCAACCGGTGCAT 62.820 55.000 18.19 4.43 33.28 3.96
368 369 3.545124 AATCGAGCCAACCGGTGCA 62.545 57.895 18.19 0.00 33.28 4.57
369 370 1.862602 AAAATCGAGCCAACCGGTGC 61.863 55.000 8.52 8.70 33.28 5.01
370 371 0.168128 GAAAATCGAGCCAACCGGTG 59.832 55.000 8.52 1.82 33.28 4.94
371 372 0.250553 TGAAAATCGAGCCAACCGGT 60.251 50.000 0.00 0.00 33.28 5.28
372 373 0.168128 GTGAAAATCGAGCCAACCGG 59.832 55.000 0.00 0.00 0.00 5.28
373 374 1.135972 CAGTGAAAATCGAGCCAACCG 60.136 52.381 0.00 0.00 0.00 4.44
374 375 2.151202 TCAGTGAAAATCGAGCCAACC 58.849 47.619 0.00 0.00 0.00 3.77
375 376 5.351465 TCTTATCAGTGAAAATCGAGCCAAC 59.649 40.000 0.00 0.00 0.00 3.77
376 377 5.487433 TCTTATCAGTGAAAATCGAGCCAA 58.513 37.500 0.00 0.00 0.00 4.52
377 378 5.084818 TCTTATCAGTGAAAATCGAGCCA 57.915 39.130 0.00 0.00 0.00 4.75
378 379 6.422776 TTTCTTATCAGTGAAAATCGAGCC 57.577 37.500 0.00 0.00 30.41 4.70
379 380 8.017946 AGTTTTTCTTATCAGTGAAAATCGAGC 58.982 33.333 0.00 0.00 40.42 5.03
380 381 9.535270 GAGTTTTTCTTATCAGTGAAAATCGAG 57.465 33.333 0.00 0.00 40.42 4.04
381 382 9.051679 TGAGTTTTTCTTATCAGTGAAAATCGA 57.948 29.630 0.00 0.00 40.42 3.59
382 383 9.322776 CTGAGTTTTTCTTATCAGTGAAAATCG 57.677 33.333 0.00 0.00 40.42 3.34
389 390 9.787532 TGTTTTTCTGAGTTTTTCTTATCAGTG 57.212 29.630 0.00 0.00 40.07 3.66
391 392 9.455847 CCTGTTTTTCTGAGTTTTTCTTATCAG 57.544 33.333 0.00 0.00 40.42 2.90
392 393 8.413229 CCCTGTTTTTCTGAGTTTTTCTTATCA 58.587 33.333 0.00 0.00 0.00 2.15
393 394 8.414003 ACCCTGTTTTTCTGAGTTTTTCTTATC 58.586 33.333 0.00 0.00 0.00 1.75
394 395 8.306313 ACCCTGTTTTTCTGAGTTTTTCTTAT 57.694 30.769 0.00 0.00 0.00 1.73
395 396 7.712204 ACCCTGTTTTTCTGAGTTTTTCTTA 57.288 32.000 0.00 0.00 0.00 2.10
396 397 6.605471 ACCCTGTTTTTCTGAGTTTTTCTT 57.395 33.333 0.00 0.00 0.00 2.52
397 398 7.712204 TTACCCTGTTTTTCTGAGTTTTTCT 57.288 32.000 0.00 0.00 0.00 2.52
398 399 8.033038 AGTTTACCCTGTTTTTCTGAGTTTTTC 58.967 33.333 0.00 0.00 0.00 2.29
399 400 7.903145 AGTTTACCCTGTTTTTCTGAGTTTTT 58.097 30.769 0.00 0.00 0.00 1.94
400 401 7.476540 AGTTTACCCTGTTTTTCTGAGTTTT 57.523 32.000 0.00 0.00 0.00 2.43
401 402 8.584063 TTAGTTTACCCTGTTTTTCTGAGTTT 57.416 30.769 0.00 0.00 0.00 2.66
402 403 8.464404 GTTTAGTTTACCCTGTTTTTCTGAGTT 58.536 33.333 0.00 0.00 0.00 3.01
403 404 7.067859 GGTTTAGTTTACCCTGTTTTTCTGAGT 59.932 37.037 0.00 0.00 0.00 3.41
404 405 7.284716 AGGTTTAGTTTACCCTGTTTTTCTGAG 59.715 37.037 0.00 0.00 36.27 3.35
405 406 7.120716 AGGTTTAGTTTACCCTGTTTTTCTGA 58.879 34.615 0.00 0.00 36.27 3.27
406 407 7.342769 AGGTTTAGTTTACCCTGTTTTTCTG 57.657 36.000 0.00 0.00 36.27 3.02
407 408 7.230108 GCTAGGTTTAGTTTACCCTGTTTTTCT 59.770 37.037 0.00 0.00 36.27 2.52
408 409 7.365741 GCTAGGTTTAGTTTACCCTGTTTTTC 58.634 38.462 0.00 0.00 36.27 2.29
409 410 6.266103 GGCTAGGTTTAGTTTACCCTGTTTTT 59.734 38.462 0.00 0.00 36.27 1.94
410 411 5.771666 GGCTAGGTTTAGTTTACCCTGTTTT 59.228 40.000 0.00 0.00 36.27 2.43
411 412 5.163066 TGGCTAGGTTTAGTTTACCCTGTTT 60.163 40.000 0.00 0.00 36.27 2.83
412 413 4.351704 TGGCTAGGTTTAGTTTACCCTGTT 59.648 41.667 0.00 0.00 36.27 3.16
413 414 3.911894 TGGCTAGGTTTAGTTTACCCTGT 59.088 43.478 0.00 0.00 36.27 4.00
414 415 4.514401 CTGGCTAGGTTTAGTTTACCCTG 58.486 47.826 0.00 0.00 36.27 4.45
415 416 3.522343 CCTGGCTAGGTTTAGTTTACCCT 59.478 47.826 8.21 0.00 39.39 4.34
416 417 3.882444 CCTGGCTAGGTTTAGTTTACCC 58.118 50.000 8.21 0.00 39.39 3.69
447 448 9.621629 CAACCCCACATAAGTTATTATTCTACA 57.378 33.333 0.00 0.00 28.73 2.74
448 449 9.063615 CCAACCCCACATAAGTTATTATTCTAC 57.936 37.037 0.00 0.00 28.73 2.59
449 450 8.221944 CCCAACCCCACATAAGTTATTATTCTA 58.778 37.037 0.00 0.00 28.73 2.10
450 451 7.066781 CCCAACCCCACATAAGTTATTATTCT 58.933 38.462 0.00 0.00 28.73 2.40
451 452 7.064229 TCCCAACCCCACATAAGTTATTATTC 58.936 38.462 0.00 0.00 28.73 1.75
452 453 6.987557 TCCCAACCCCACATAAGTTATTATT 58.012 36.000 0.00 0.00 28.73 1.40
453 454 6.599986 TCCCAACCCCACATAAGTTATTAT 57.400 37.500 0.00 0.00 31.51 1.28
454 455 6.369629 CATCCCAACCCCACATAAGTTATTA 58.630 40.000 0.00 0.00 0.00 0.98
455 456 4.957606 TCCCAACCCCACATAAGTTATT 57.042 40.909 0.00 0.00 0.00 1.40
456 457 4.803452 CATCCCAACCCCACATAAGTTAT 58.197 43.478 0.00 0.00 0.00 1.89
457 458 3.626222 GCATCCCAACCCCACATAAGTTA 60.626 47.826 0.00 0.00 0.00 2.24
458 459 2.888069 GCATCCCAACCCCACATAAGTT 60.888 50.000 0.00 0.00 0.00 2.66
459 460 1.341976 GCATCCCAACCCCACATAAGT 60.342 52.381 0.00 0.00 0.00 2.24
460 461 1.063717 AGCATCCCAACCCCACATAAG 60.064 52.381 0.00 0.00 0.00 1.73
461 462 1.006813 AGCATCCCAACCCCACATAA 58.993 50.000 0.00 0.00 0.00 1.90
493 494 3.023832 TCTGGATGAATGCGTCTCTGTA 58.976 45.455 0.00 0.00 0.00 2.74
562 563 0.687757 GAAGGGGAAGGGGATTTGGC 60.688 60.000 0.00 0.00 0.00 4.52
734 735 0.030773 TAATCCGCAGACGCTAGCAG 59.969 55.000 16.45 10.16 38.22 4.24
735 736 0.673985 ATAATCCGCAGACGCTAGCA 59.326 50.000 16.45 0.00 38.22 3.49
736 737 1.335964 TGATAATCCGCAGACGCTAGC 60.336 52.381 4.06 4.06 38.22 3.42
737 738 2.030717 AGTGATAATCCGCAGACGCTAG 60.031 50.000 0.00 0.00 38.22 3.42
738 739 1.954382 AGTGATAATCCGCAGACGCTA 59.046 47.619 0.00 0.00 38.22 4.26
739 740 0.747255 AGTGATAATCCGCAGACGCT 59.253 50.000 0.00 0.00 38.22 5.07
839 840 2.452600 AGTTTGGCTCCCTTTGTTGA 57.547 45.000 0.00 0.00 0.00 3.18
846 847 1.068121 ACTGCTAAGTTTGGCTCCCT 58.932 50.000 1.96 0.00 35.49 4.20
857 858 2.704572 ACTGCTGCCTTTACTGCTAAG 58.295 47.619 0.00 0.00 35.70 2.18
859 860 3.973206 TTACTGCTGCCTTTACTGCTA 57.027 42.857 0.00 0.00 35.70 3.49
861 862 2.030946 CGATTACTGCTGCCTTTACTGC 59.969 50.000 0.00 0.00 35.29 4.40
864 865 5.926542 TGATATCGATTACTGCTGCCTTTAC 59.073 40.000 1.71 0.00 0.00 2.01
867 868 4.607293 TGATATCGATTACTGCTGCCTT 57.393 40.909 1.71 0.00 0.00 4.35
868 869 4.607293 TTGATATCGATTACTGCTGCCT 57.393 40.909 1.71 0.00 0.00 4.75
946 997 8.147642 ACAAGAGCAAACTGATTATATACTGC 57.852 34.615 0.00 0.00 0.00 4.40
1188 1258 4.278170 TGATTTCGAGTTGCCAAATCAAGT 59.722 37.500 5.67 0.00 41.41 3.16
1199 1269 4.203950 TCAACGGTTTGATTTCGAGTTG 57.796 40.909 0.00 2.90 36.79 3.16
1217 1287 2.749466 GCAGGCCCTGTTAGCATATCAA 60.749 50.000 13.35 0.00 33.43 2.57
1385 1455 3.429141 CCTTGCCTGTCAGCGCAG 61.429 66.667 11.47 0.00 36.14 5.18
1438 1508 7.031372 GCAAAGCAATCTTTCATGAACATCTA 58.969 34.615 7.89 0.00 40.35 1.98
1600 1688 9.232473 GTGGAATCTCTAAAAAGACCTACATTT 57.768 33.333 0.00 0.00 0.00 2.32
1604 1692 7.701501 CGTAGTGGAATCTCTAAAAAGACCTAC 59.298 40.741 0.00 0.00 0.00 3.18
1607 1695 5.811100 CCGTAGTGGAATCTCTAAAAAGACC 59.189 44.000 0.00 0.00 42.00 3.85
1609 1697 6.845758 TCCGTAGTGGAATCTCTAAAAAGA 57.154 37.500 0.00 0.00 46.38 2.52
1623 1711 2.547211 CTCCGTATGTAGTCCGTAGTGG 59.453 54.545 0.00 0.00 40.09 4.00
1624 1712 2.032204 GCTCCGTATGTAGTCCGTAGTG 60.032 54.545 0.00 0.00 0.00 2.74
1625 1713 2.216898 GCTCCGTATGTAGTCCGTAGT 58.783 52.381 0.00 0.00 0.00 2.73
1626 1714 2.216046 TGCTCCGTATGTAGTCCGTAG 58.784 52.381 0.00 0.00 0.00 3.51
1627 1715 2.330440 TGCTCCGTATGTAGTCCGTA 57.670 50.000 0.00 0.00 0.00 4.02
1628 1716 1.466856 TTGCTCCGTATGTAGTCCGT 58.533 50.000 0.00 0.00 0.00 4.69
1629 1717 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
1630 1718 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
1631 1719 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1632 1720 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
1633 1721 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1634 1722 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1635 1723 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1636 1724 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1637 1725 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1638 1726 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1639 1727 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1640 1728 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1641 1729 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1642 1730 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1680 1768 9.650714 ACACTACAAACTACATAGGGATGTATA 57.349 33.333 0.00 0.00 45.42 1.47
1681 1769 8.548880 ACACTACAAACTACATAGGGATGTAT 57.451 34.615 0.00 0.00 45.42 2.29
1682 1770 7.966339 ACACTACAAACTACATAGGGATGTA 57.034 36.000 0.00 0.00 44.77 2.29
1684 1772 9.477484 GATTACACTACAAACTACATAGGGATG 57.523 37.037 0.00 0.00 39.16 3.51
1685 1773 9.435570 AGATTACACTACAAACTACATAGGGAT 57.564 33.333 0.00 0.00 0.00 3.85
1686 1774 8.834004 AGATTACACTACAAACTACATAGGGA 57.166 34.615 0.00 0.00 0.00 4.20
1687 1775 8.915036 AGAGATTACACTACAAACTACATAGGG 58.085 37.037 0.00 0.00 0.00 3.53
1714 1802 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1715 1803 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1716 1804 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1717 1805 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1718 1806 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1719 1807 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1720 1808 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1721 1809 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1722 1810 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
1729 1817 3.359950 GAAACTACTCCCTCCGTTCCTA 58.640 50.000 0.00 0.00 0.00 2.94
1730 1818 2.177734 GAAACTACTCCCTCCGTTCCT 58.822 52.381 0.00 0.00 0.00 3.36
1733 1821 2.019807 TGGAAACTACTCCCTCCGTT 57.980 50.000 0.00 0.00 34.22 4.44
1736 1824 4.202430 TGACTTTTGGAAACTACTCCCTCC 60.202 45.833 0.00 0.00 34.22 4.30
1745 1833 6.713762 TTGATGTCATGACTTTTGGAAACT 57.286 33.333 25.55 0.00 0.00 2.66
1888 1988 2.167075 GGCTGGTTTCAGATCCAAATGG 59.833 50.000 0.00 0.00 43.49 3.16
2011 2111 2.092429 TCATCTGGCTTACATTGTCCCC 60.092 50.000 0.00 0.00 0.00 4.81
2114 2217 8.621286 CGCCAAATATCCCCTATATGAAAATAC 58.379 37.037 0.00 0.00 30.84 1.89
2357 2463 6.508563 CGTGAGTATATTTGTGTCTGCATCAC 60.509 42.308 13.11 13.11 36.48 3.06
2446 2770 8.765517 TCAGATCTATCACCATATACATTGCAT 58.234 33.333 0.00 0.00 0.00 3.96
2596 3352 8.868916 CAATTACCTACAAAATTACATTGGTGC 58.131 33.333 0.00 0.00 32.02 5.01
2948 3715 3.554960 CGAAAGAGGGATGTGTGAGTCAA 60.555 47.826 0.00 0.00 0.00 3.18
3417 4204 8.494433 AGTAGGGCTCACTGATTCAAATTATAA 58.506 33.333 0.00 0.00 0.00 0.98
3644 4431 2.990740 AGGGGTAGCAACAAAATCCA 57.009 45.000 0.00 0.00 0.00 3.41
3737 4525 6.835914 AGTTTCTAGCATTTTCTCGTCATTG 58.164 36.000 0.00 0.00 0.00 2.82
3738 4526 6.650807 TGAGTTTCTAGCATTTTCTCGTCATT 59.349 34.615 0.00 0.00 0.00 2.57
3805 4593 0.391130 GTTGGGCTATGTGACTGCGA 60.391 55.000 0.00 0.00 0.00 5.10
3847 4635 3.827876 ACCAACACATGCTTCATGATTCA 59.172 39.130 13.11 0.00 43.81 2.57
3848 4636 4.157289 AGACCAACACATGCTTCATGATTC 59.843 41.667 13.11 0.00 43.81 2.52
3849 4637 4.084287 AGACCAACACATGCTTCATGATT 58.916 39.130 13.11 4.94 43.81 2.57
3850 4638 3.693085 GAGACCAACACATGCTTCATGAT 59.307 43.478 13.11 0.00 43.81 2.45
3851 4639 3.076621 GAGACCAACACATGCTTCATGA 58.923 45.455 13.11 0.00 43.81 3.07
3852 4640 2.815503 TGAGACCAACACATGCTTCATG 59.184 45.455 5.35 5.35 46.18 3.07
3853 4641 3.144657 TGAGACCAACACATGCTTCAT 57.855 42.857 0.00 0.00 0.00 2.57
3854 4642 2.636647 TGAGACCAACACATGCTTCA 57.363 45.000 0.00 0.00 0.00 3.02
3855 4643 4.510038 AAATGAGACCAACACATGCTTC 57.490 40.909 0.00 0.00 30.79 3.86
3856 4644 4.586001 AGAAAATGAGACCAACACATGCTT 59.414 37.500 0.00 0.00 30.79 3.91
3857 4645 4.147321 AGAAAATGAGACCAACACATGCT 58.853 39.130 0.00 0.00 30.79 3.79
3858 4646 4.022935 TGAGAAAATGAGACCAACACATGC 60.023 41.667 0.00 0.00 30.79 4.06
3859 4647 5.694231 TGAGAAAATGAGACCAACACATG 57.306 39.130 0.00 0.00 30.79 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.