Multiple sequence alignment - TraesCS5B01G470500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G470500 chr5B 100.000 5695 0 0 1 5695 643669665 643675359 0.000000e+00 10517.0
1 TraesCS5B01G470500 chr5B 90.769 260 20 3 5437 5695 643976477 643976733 1.520000e-90 344.0
2 TraesCS5B01G470500 chr5B 94.089 203 11 1 5494 5695 643973557 643973759 1.990000e-79 307.0
3 TraesCS5B01G470500 chr5D 88.542 2688 151 50 2687 5266 512775311 512777949 0.000000e+00 3112.0
4 TraesCS5B01G470500 chr5D 91.232 2281 108 22 58 2276 512772373 512774623 0.000000e+00 3020.0
5 TraesCS5B01G470500 chr5D 91.837 245 18 1 5450 5694 513465995 513466237 1.970000e-89 340.0
6 TraesCS5B01G470500 chr5D 96.040 202 8 0 5494 5695 512894204 512894405 4.250000e-86 329.0
7 TraesCS5B01G470500 chr5D 95.567 203 7 2 5492 5693 512778157 512778358 1.980000e-84 324.0
8 TraesCS5B01G470500 chr5D 90.283 247 19 5 5449 5695 512906929 512907170 9.210000e-83 318.0
9 TraesCS5B01G470500 chr5A 95.250 1579 57 9 985 2554 640945694 640947263 0.000000e+00 2484.0
10 TraesCS5B01G470500 chr5A 89.746 1024 56 21 4002 4992 640948894 640949901 0.000000e+00 1264.0
11 TraesCS5B01G470500 chr5A 94.022 736 32 5 1 734 640942638 640943363 0.000000e+00 1105.0
12 TraesCS5B01G470500 chr5A 93.604 641 25 6 3325 3953 640948258 640948894 0.000000e+00 942.0
13 TraesCS5B01G470500 chr5A 99.042 522 5 0 2800 3321 640947573 640948094 0.000000e+00 937.0
14 TraesCS5B01G470500 chr5A 82.495 537 58 16 5170 5695 640949951 640950462 6.770000e-119 438.0
15 TraesCS5B01G470500 chr5A 95.312 256 9 3 2550 2804 640947295 640947548 2.470000e-108 403.0
16 TraesCS5B01G470500 chr5A 92.636 258 13 5 5440 5695 641056424 641056677 3.240000e-97 366.0
17 TraesCS5B01G470500 chr5A 95.610 205 7 2 5492 5695 641117079 641117282 1.530000e-85 327.0
18 TraesCS5B01G470500 chr5A 84.524 84 11 2 2588 2669 685540260 685540343 1.320000e-11 82.4
19 TraesCS5B01G470500 chr4A 83.761 117 19 0 2561 2677 685338383 685338499 1.680000e-20 111.0
20 TraesCS5B01G470500 chr2A 93.023 43 3 0 2579 2621 755176172 755176214 4.760000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G470500 chr5B 643669665 643675359 5694 False 10517.000000 10517 100.000000 1 5695 1 chr5B.!!$F1 5694
1 TraesCS5B01G470500 chr5B 643973557 643976733 3176 False 325.500000 344 92.429000 5437 5695 2 chr5B.!!$F2 258
2 TraesCS5B01G470500 chr5D 512772373 512778358 5985 False 2152.000000 3112 91.780333 58 5693 3 chr5D.!!$F4 5635
3 TraesCS5B01G470500 chr5A 640942638 640950462 7824 False 1081.857143 2484 92.781571 1 5695 7 chr5A.!!$F4 5694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 423 0.872021 CAGAGTCGCGCATTCCCTAC 60.872 60.0 8.75 0.0 0.00 3.18 F
1516 3621 0.105964 TCCCATCTCTCCTCTTCCGG 60.106 60.0 0.00 0.0 0.00 5.14 F
1517 3622 0.105964 CCCATCTCTCCTCTTCCGGA 60.106 60.0 0.00 0.0 0.00 5.14 F
2117 4228 0.108329 CGGATAACTCCACCGTTGCT 60.108 55.0 0.00 0.0 42.19 3.91 F
2565 5025 0.344435 GGTACCCCTTCCCTCCCTTA 59.656 60.0 0.00 0.0 0.00 2.69 F
4088 6765 0.519999 GCACAGCTCAGAAAATCGCG 60.520 55.0 0.00 0.0 0.00 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 4625 0.100503 AAGGCGACAAACACAACAGC 59.899 50.000 0.00 0.0 0.00 4.40 R
3324 5981 0.902531 GGAGGTGCCTTACTGTGCTA 59.097 55.000 0.00 0.0 0.00 3.49 R
3349 6006 2.645797 ACAACCCCTTTTTCCTCCGATA 59.354 45.455 0.00 0.0 0.00 2.92 R
3998 6675 0.774098 CGTTGTCGTACAGGTTGTCG 59.226 55.000 0.00 0.0 0.00 4.35 R
4545 7227 2.918131 GCACGAGAAGGCAAACATGTTC 60.918 50.000 12.39 0.0 0.00 3.18 R
5304 8079 0.117541 TTCAGGTACCTGGCCTACCA 59.882 55.000 35.94 16.5 46.51 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.291566 TGAAAATTCACCTAGTAAAACCTGGA 58.708 34.615 0.00 0.00 31.01 3.86
44 45 7.229907 TGAAAATTCACCTAGTAAAACCTGGAC 59.770 37.037 0.00 0.00 31.01 4.02
45 46 6.449830 AATTCACCTAGTAAAACCTGGACT 57.550 37.500 0.00 0.00 0.00 3.85
46 47 5.899631 TTCACCTAGTAAAACCTGGACTT 57.100 39.130 0.00 0.00 0.00 3.01
47 48 6.999705 TTCACCTAGTAAAACCTGGACTTA 57.000 37.500 0.00 0.00 0.00 2.24
48 49 6.999705 TCACCTAGTAAAACCTGGACTTAA 57.000 37.500 0.00 0.00 0.00 1.85
49 50 7.563724 TCACCTAGTAAAACCTGGACTTAAT 57.436 36.000 0.00 0.00 0.00 1.40
50 51 7.618137 TCACCTAGTAAAACCTGGACTTAATC 58.382 38.462 0.00 0.00 0.00 1.75
73 74 7.973048 TCACTTAAACATGTACTATCCCTCT 57.027 36.000 0.00 0.00 0.00 3.69
100 101 9.319143 CATTGTTTTGTTAGGGAACATTTTGTA 57.681 29.630 0.00 0.00 44.96 2.41
143 144 3.176708 CAAGGCATTGCTGAGATTTTCG 58.823 45.455 8.82 0.00 0.00 3.46
144 145 2.440409 AGGCATTGCTGAGATTTTCGT 58.560 42.857 8.82 0.00 0.00 3.85
145 146 2.821969 AGGCATTGCTGAGATTTTCGTT 59.178 40.909 8.82 0.00 0.00 3.85
152 155 4.059511 TGCTGAGATTTTCGTTAAACCGA 58.940 39.130 0.00 0.00 34.52 4.69
390 397 5.581126 TCTTGTCATAATTCCAATGTGCC 57.419 39.130 0.00 0.00 0.00 5.01
406 413 4.504916 CCCAGAGGCAGAGTCGCG 62.505 72.222 0.00 0.00 0.00 5.87
416 423 0.872021 CAGAGTCGCGCATTCCCTAC 60.872 60.000 8.75 0.00 0.00 3.18
439 446 4.408993 TTCAGAAACATTCTCATGTGCG 57.591 40.909 0.00 0.00 43.34 5.34
453 460 2.046023 TGCGCCCTCATTCCACTG 60.046 61.111 4.18 0.00 0.00 3.66
601 608 3.423154 GCGCAGGTCAACTTCCGG 61.423 66.667 0.30 0.00 0.00 5.14
756 782 2.107950 TTGCTACCATGTACACCTGC 57.892 50.000 0.00 0.00 0.00 4.85
870 908 9.838339 ATTCTGTATCACCTTAGGTTTAAGATG 57.162 33.333 0.00 0.00 38.88 2.90
1009 3114 4.973055 TTGGTCAACGACGGCCCG 62.973 66.667 0.00 0.00 32.65 6.13
1168 3273 2.892425 CAGGATCGAAGGTGCGCC 60.892 66.667 8.71 8.71 0.00 6.53
1169 3274 4.162690 AGGATCGAAGGTGCGCCC 62.163 66.667 14.07 5.76 34.57 6.13
1232 3337 1.451387 CGGACCTCAAAATCCCCCG 60.451 63.158 0.00 0.00 0.00 5.73
1271 3376 2.722071 CTCTCGCGGTAAGAAGATCAC 58.278 52.381 6.13 0.00 0.00 3.06
1283 3388 0.178068 AAGATCACCCGTCCATTCCG 59.822 55.000 0.00 0.00 0.00 4.30
1291 3396 1.400494 CCCGTCCATTCCGTTCAATTC 59.600 52.381 0.00 0.00 0.00 2.17
1305 3410 1.398041 TCAATTCGCAGCTGAATTCGG 59.602 47.619 20.43 10.10 44.55 4.30
1349 3454 0.671251 CTTCCTCCCCGAATCGAGAG 59.329 60.000 3.36 9.82 0.00 3.20
1391 3496 4.647611 TCTGAGCTCCGGATTTTTGTTTA 58.352 39.130 12.15 0.00 0.00 2.01
1511 3616 0.760189 GCAGCTCCCATCTCTCCTCT 60.760 60.000 0.00 0.00 0.00 3.69
1512 3617 1.792115 CAGCTCCCATCTCTCCTCTT 58.208 55.000 0.00 0.00 0.00 2.85
1515 3620 1.327303 CTCCCATCTCTCCTCTTCCG 58.673 60.000 0.00 0.00 0.00 4.30
1516 3621 0.105964 TCCCATCTCTCCTCTTCCGG 60.106 60.000 0.00 0.00 0.00 5.14
1517 3622 0.105964 CCCATCTCTCCTCTTCCGGA 60.106 60.000 0.00 0.00 0.00 5.14
2042 4153 4.752879 TGTGCGGCGCCTTACTCC 62.753 66.667 30.82 8.57 0.00 3.85
2069 4180 2.823154 AGCTACAGAGAGTCAACTGACC 59.177 50.000 19.32 9.73 45.85 4.02
2117 4228 0.108329 CGGATAACTCCACCGTTGCT 60.108 55.000 0.00 0.00 42.19 3.91
2276 4625 6.048073 TCGATTCCTTTAGAATTTCATGCG 57.952 37.500 0.00 0.00 45.52 4.73
2299 4648 2.223456 TGTTGTGTTTGTCGCCTTCATG 60.223 45.455 0.00 0.00 0.00 3.07
2320 4686 7.250569 TCATGTTTTGTCAAAAGAAGAGTGTC 58.749 34.615 11.03 0.00 0.00 3.67
2411 4833 2.099921 TCACCCAAAATGTTGTGTTCCG 59.900 45.455 0.00 0.00 32.40 4.30
2565 5025 0.344435 GGTACCCCTTCCCTCCCTTA 59.656 60.000 0.00 0.00 0.00 2.69
2609 5069 6.397217 AGTTACTTAAAAAGCCTATCCCCA 57.603 37.500 0.00 0.00 0.00 4.96
2706 5167 1.769733 CAACAGGACGGCACAAAATG 58.230 50.000 0.00 0.00 0.00 2.32
2709 5170 2.577700 ACAGGACGGCACAAAATGTAA 58.422 42.857 0.00 0.00 0.00 2.41
2710 5171 2.552315 ACAGGACGGCACAAAATGTAAG 59.448 45.455 0.00 0.00 0.00 2.34
2715 5176 4.403453 GACGGCACAAAATGTAAGACATC 58.597 43.478 0.00 0.00 37.97 3.06
2741 5202 1.173913 GAACCAACTATTTGCGGCCT 58.826 50.000 0.00 0.00 0.00 5.19
2759 5220 4.499357 CGGCCTATTTCCTACACACTAGTC 60.499 50.000 0.00 0.00 0.00 2.59
2859 5348 1.686355 CACCTGTTGTTGGTTGGCTA 58.314 50.000 0.00 0.00 35.28 3.93
3250 5739 3.921677 TCGTTGTTCATTGTAGTCTCCC 58.078 45.455 0.00 0.00 0.00 4.30
3322 5979 6.056090 TGTAGTTGCTTTGGACCATGTATA 57.944 37.500 0.00 0.00 0.00 1.47
3323 5980 6.112734 TGTAGTTGCTTTGGACCATGTATAG 58.887 40.000 0.00 0.00 0.00 1.31
3324 5981 5.179452 AGTTGCTTTGGACCATGTATAGT 57.821 39.130 0.00 0.00 0.00 2.12
3349 6006 1.004745 CAGTAAGGCACCTCCCACATT 59.995 52.381 0.00 0.00 34.51 2.71
3368 6025 4.264217 ACATTATCGGAGGAAAAAGGGGTT 60.264 41.667 0.00 0.00 0.00 4.11
3386 6043 5.714806 AGGGGTTGTTGATGTAGTAAAATGG 59.285 40.000 0.00 0.00 0.00 3.16
3388 6045 5.479027 GGGTTGTTGATGTAGTAAAATGGGT 59.521 40.000 0.00 0.00 0.00 4.51
3440 6097 0.815213 TTGGATCGCTATGGTGCTGC 60.815 55.000 0.00 0.00 0.00 5.25
3455 6112 1.146358 GCTGCGGTATTCTCGTCCAC 61.146 60.000 0.00 0.00 0.00 4.02
3522 6179 2.740981 GGTCATGTCTGAGCACTTTCAG 59.259 50.000 0.00 0.00 46.77 3.02
3526 6183 3.827008 TGTCTGAGCACTTTCAGTTCT 57.173 42.857 3.26 0.00 43.96 3.01
3815 6472 3.071457 TCCTGACTTTGCAGTGATCTTCA 59.929 43.478 0.00 0.00 34.06 3.02
3871 6538 8.252964 ACAACATATTAACTCGGAAGTCTTTC 57.747 34.615 0.00 0.00 33.48 2.62
3897 6574 9.606631 CTTCTCTGGAGTAAAGTTTATAGCATT 57.393 33.333 0.00 0.00 0.00 3.56
3960 6637 4.020485 AGGTATTTCACTACTCGGTTGCTT 60.020 41.667 0.00 0.00 0.00 3.91
3980 6657 4.498682 GCTTCTGGTGATGTTATCATTGCC 60.499 45.833 0.00 0.00 42.04 4.52
3998 6675 2.885113 GGCACGGATGGGCTTTTC 59.115 61.111 0.00 0.00 0.00 2.29
4088 6765 0.519999 GCACAGCTCAGAAAATCGCG 60.520 55.000 0.00 0.00 0.00 5.87
4184 6861 3.041946 CAGGTACTATGGAGGGAAGCTT 58.958 50.000 0.00 0.00 36.02 3.74
4211 6888 1.210931 CACGGTCGTGGTGTCGTAT 59.789 57.895 14.88 0.00 42.00 3.06
4338 7015 6.847036 AGTAGATTCCTAGGCTGGTTTATTCT 59.153 38.462 2.96 0.00 0.00 2.40
4339 7016 5.934781 AGATTCCTAGGCTGGTTTATTCTG 58.065 41.667 2.96 0.00 0.00 3.02
4340 7017 5.667626 AGATTCCTAGGCTGGTTTATTCTGA 59.332 40.000 2.96 0.00 0.00 3.27
4341 7018 5.359194 TTCCTAGGCTGGTTTATTCTGAG 57.641 43.478 2.96 0.00 0.00 3.35
4342 7019 4.362677 TCCTAGGCTGGTTTATTCTGAGT 58.637 43.478 2.96 0.00 0.00 3.41
4343 7020 4.162320 TCCTAGGCTGGTTTATTCTGAGTG 59.838 45.833 2.96 0.00 0.00 3.51
4345 7022 4.373156 AGGCTGGTTTATTCTGAGTGTT 57.627 40.909 0.00 0.00 0.00 3.32
4346 7023 4.074970 AGGCTGGTTTATTCTGAGTGTTG 58.925 43.478 0.00 0.00 0.00 3.33
4354 7032 0.991920 TTCTGAGTGTTGGGGGATCC 59.008 55.000 1.92 1.92 0.00 3.36
4472 7150 5.564550 ACATGAGATGCTTCTTGTAAACCT 58.435 37.500 0.00 0.00 34.74 3.50
4545 7227 7.719778 TTCATATATTCAGTGCTAGTTGCTG 57.280 36.000 0.00 0.00 43.37 4.41
4576 7258 0.458197 CTTCTCGTGCTGCTGAGAGG 60.458 60.000 19.26 17.51 41.87 3.69
4579 7261 0.528017 CTCGTGCTGCTGAGAGGTAA 59.472 55.000 14.58 0.00 34.04 2.85
4621 7303 0.517316 CGTTAGCTCACCAAACTGCC 59.483 55.000 0.00 0.00 0.00 4.85
4701 7383 7.877097 TCAAGGCAATTTTATTTACATGCTGTT 59.123 29.630 0.00 0.00 34.37 3.16
4749 7448 1.202348 GTTTTGCTGGTATGGTGAGCC 59.798 52.381 0.00 0.00 31.31 4.70
4822 7524 4.693566 TGTTGTTGCGAGGTTTAAGATAGG 59.306 41.667 0.00 0.00 0.00 2.57
4827 7529 2.612672 GCGAGGTTTAAGATAGGGTTGC 59.387 50.000 0.00 0.00 0.00 4.17
4832 7534 5.887754 AGGTTTAAGATAGGGTTGCAAAGA 58.112 37.500 0.00 0.00 0.00 2.52
4839 7541 7.631717 AAGATAGGGTTGCAAAGATAACTTC 57.368 36.000 0.00 0.00 35.05 3.01
4854 7578 1.722011 ACTTCGTGGATTTACGGCAG 58.278 50.000 0.00 0.00 43.85 4.85
4867 7591 2.922740 ACGGCAGAAGGTTTGAGTAA 57.077 45.000 0.00 0.00 0.00 2.24
4886 7610 5.497474 AGTAAAGAAGGGCGTGTGATATTT 58.503 37.500 0.00 0.00 0.00 1.40
4887 7611 4.965119 AAAGAAGGGCGTGTGATATTTC 57.035 40.909 0.00 0.00 0.00 2.17
4888 7612 3.627395 AGAAGGGCGTGTGATATTTCA 57.373 42.857 0.00 0.00 0.00 2.69
4889 7613 4.156455 AGAAGGGCGTGTGATATTTCAT 57.844 40.909 0.00 0.00 33.56 2.57
4892 7616 3.403038 AGGGCGTGTGATATTTCATAGC 58.597 45.455 0.00 0.00 33.56 2.97
4893 7617 2.157668 GGGCGTGTGATATTTCATAGCG 59.842 50.000 0.00 0.00 33.56 4.26
4895 7619 3.247648 GGCGTGTGATATTTCATAGCGTT 59.752 43.478 0.00 0.00 33.56 4.84
4896 7620 4.203828 GCGTGTGATATTTCATAGCGTTG 58.796 43.478 0.00 0.00 33.56 4.10
4897 7621 4.203828 CGTGTGATATTTCATAGCGTTGC 58.796 43.478 0.00 0.00 33.56 4.17
4898 7622 4.260172 CGTGTGATATTTCATAGCGTTGCA 60.260 41.667 0.00 0.00 33.56 4.08
4899 7623 5.568482 GTGTGATATTTCATAGCGTTGCAA 58.432 37.500 0.00 0.00 33.56 4.08
4900 7624 6.027131 GTGTGATATTTCATAGCGTTGCAAA 58.973 36.000 0.00 0.00 33.56 3.68
4901 7625 6.195244 GTGTGATATTTCATAGCGTTGCAAAG 59.805 38.462 8.11 8.11 33.56 2.77
4902 7626 6.093357 TGTGATATTTCATAGCGTTGCAAAGA 59.907 34.615 16.93 0.00 33.56 2.52
4903 7627 6.966632 GTGATATTTCATAGCGTTGCAAAGAA 59.033 34.615 16.93 3.49 33.56 2.52
4907 7631 2.416547 TCATAGCGTTGCAAAGAAGCTC 59.583 45.455 16.93 0.00 39.14 4.09
4918 7642 3.737850 CAAAGAAGCTCCACAGTTCTCT 58.262 45.455 0.00 0.00 30.07 3.10
4929 7653 4.137543 CCACAGTTCTCTTTTAAGCTGGT 58.862 43.478 0.00 0.00 0.00 4.00
5002 7726 5.248020 ACTGGTCTGAATTCTGATCTGAAGT 59.752 40.000 27.68 19.02 31.61 3.01
5007 7731 2.322355 ATTCTGATCTGAAGTGCCGG 57.678 50.000 18.38 0.00 0.00 6.13
5008 7732 0.391661 TTCTGATCTGAAGTGCCGGC 60.392 55.000 22.73 22.73 0.00 6.13
5009 7733 1.817099 CTGATCTGAAGTGCCGGCC 60.817 63.158 26.77 15.80 0.00 6.13
5054 7784 4.482386 CGAGTTCTGATCTGAACCGTTAA 58.518 43.478 30.68 3.35 45.25 2.01
5068 7798 1.142474 CGTTAAGGGTCGTTGTCACC 58.858 55.000 0.00 0.00 0.00 4.02
5107 7837 0.040067 GTTAACAGTCGTCGTCGGGT 60.040 55.000 0.00 0.00 37.69 5.28
5156 7900 0.248215 CCGATTTGAGCATGCCGTTC 60.248 55.000 15.66 6.25 0.00 3.95
5163 7907 4.759096 GCATGCCGTTCACGCCAC 62.759 66.667 6.36 0.00 38.18 5.01
5183 7957 4.096984 CCACATACCTTCCTCTGAATTTGC 59.903 45.833 0.00 0.00 0.00 3.68
5275 8050 2.814280 TTCAGACGAAGGACCTGAAC 57.186 50.000 0.00 0.00 40.68 3.18
5280 8055 0.031721 ACGAAGGACCTGAACGTGAC 59.968 55.000 16.89 0.00 35.91 3.67
5281 8056 0.031585 CGAAGGACCTGAACGTGACA 59.968 55.000 0.00 0.00 0.00 3.58
5282 8057 1.537348 CGAAGGACCTGAACGTGACAA 60.537 52.381 0.00 0.00 0.00 3.18
5303 8078 4.268797 ACAACATTTGCATGCATGGTAA 57.731 36.364 27.34 13.37 33.05 2.85
5304 8079 4.834534 ACAACATTTGCATGCATGGTAAT 58.165 34.783 27.34 15.21 33.05 1.89
5305 8080 4.632251 ACAACATTTGCATGCATGGTAATG 59.368 37.500 28.74 28.74 36.82 1.90
5306 8081 3.799366 ACATTTGCATGCATGGTAATGG 58.201 40.909 31.39 20.18 34.09 3.16
5307 8082 3.198200 ACATTTGCATGCATGGTAATGGT 59.802 39.130 31.39 20.62 34.09 3.55
5308 8083 4.405036 ACATTTGCATGCATGGTAATGGTA 59.595 37.500 31.39 11.38 34.09 3.25
5335 8110 4.692625 CAGGTACCTGAATGTGAGAACAAG 59.307 45.833 34.54 3.13 46.30 3.16
5366 8165 3.628942 GCATGCCATTACTGATGTTCTCA 59.371 43.478 6.36 0.00 33.71 3.27
5375 8174 9.350357 CCATTACTGATGTTCTCATTTTCTTTG 57.650 33.333 0.00 0.00 34.06 2.77
5376 8175 9.903682 CATTACTGATGTTCTCATTTTCTTTGT 57.096 29.630 0.00 0.00 34.06 2.83
5382 8181 6.455360 TGTTCTCATTTTCTTTGTTCAGCT 57.545 33.333 0.00 0.00 0.00 4.24
5385 8184 8.465999 TGTTCTCATTTTCTTTGTTCAGCTAAA 58.534 29.630 0.00 0.00 0.00 1.85
5386 8185 8.962111 GTTCTCATTTTCTTTGTTCAGCTAAAG 58.038 33.333 0.96 0.96 35.70 1.85
5387 8186 8.450578 TCTCATTTTCTTTGTTCAGCTAAAGA 57.549 30.769 5.47 5.47 40.17 2.52
5408 8207 6.455360 AGAAAATTCTTTGTTCAGACAGCA 57.545 33.333 0.00 0.00 37.04 4.41
5409 8208 6.268566 AGAAAATTCTTTGTTCAGACAGCAC 58.731 36.000 0.00 0.00 37.04 4.40
5410 8209 5.581126 AAATTCTTTGTTCAGACAGCACA 57.419 34.783 0.00 0.00 37.04 4.57
5411 8210 4.558538 ATTCTTTGTTCAGACAGCACAC 57.441 40.909 0.00 0.00 37.04 3.82
5412 8211 2.288666 TCTTTGTTCAGACAGCACACC 58.711 47.619 0.00 0.00 37.04 4.16
5426 8225 1.102809 CACACCCTGCTTGTTGCTCA 61.103 55.000 0.00 0.00 43.37 4.26
5429 8228 2.620112 CCCTGCTTGTTGCTCACGG 61.620 63.158 0.00 0.00 43.37 4.94
5455 8254 0.036732 TGCACCAGATGAACCAGACC 59.963 55.000 0.00 0.00 0.00 3.85
5476 8275 2.094675 AGGGACTGGATTGCAAAATCG 58.905 47.619 1.71 0.00 37.18 3.34
5477 8276 2.091541 GGGACTGGATTGCAAAATCGA 58.908 47.619 1.71 0.00 0.00 3.59
5485 8284 5.841810 TGGATTGCAAAATCGAACTTCTTT 58.158 33.333 1.71 0.00 0.00 2.52
5488 8287 7.923344 TGGATTGCAAAATCGAACTTCTTTAAA 59.077 29.630 1.71 0.00 0.00 1.52
5489 8288 8.427774 GGATTGCAAAATCGAACTTCTTTAAAG 58.572 33.333 9.04 9.04 0.00 1.85
5490 8289 9.180678 GATTGCAAAATCGAACTTCTTTAAAGA 57.819 29.630 13.99 13.99 0.00 2.52
5496 8295 5.338614 TCGAACTTCTTTAAAGAAAGCCG 57.661 39.130 26.37 25.20 43.84 5.52
5497 8296 4.212636 TCGAACTTCTTTAAAGAAAGCCGG 59.787 41.667 26.37 18.26 43.84 6.13
5524 8323 7.255416 GCCAGGGAGCAAAATTTAATTTGAAAA 60.255 33.333 3.51 0.00 41.73 2.29
5525 8324 8.291740 CCAGGGAGCAAAATTTAATTTGAAAAG 58.708 33.333 3.51 0.00 41.73 2.27
5670 8470 1.745489 GCCTTCTTGATCGCCCGTT 60.745 57.895 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 8.993424 AGAGGGATAGTACATGTTTAAGTGATT 58.007 33.333 2.30 0.00 0.00 2.57
48 49 8.554490 AGAGGGATAGTACATGTTTAAGTGAT 57.446 34.615 2.30 0.00 0.00 3.06
49 50 7.618117 TGAGAGGGATAGTACATGTTTAAGTGA 59.382 37.037 2.30 0.00 0.00 3.41
50 51 7.782049 TGAGAGGGATAGTACATGTTTAAGTG 58.218 38.462 2.30 0.00 0.00 3.16
100 101 3.005155 GCAAGTTGCAATGGAAGAGAACT 59.995 43.478 22.90 0.00 44.26 3.01
143 144 3.076079 TGAGGGGGAAATCGGTTTAAC 57.924 47.619 0.00 0.00 0.00 2.01
144 145 3.010808 ACATGAGGGGGAAATCGGTTTAA 59.989 43.478 0.00 0.00 0.00 1.52
145 146 2.578940 ACATGAGGGGGAAATCGGTTTA 59.421 45.455 0.00 0.00 0.00 2.01
152 155 3.334881 AGAGACAAACATGAGGGGGAAAT 59.665 43.478 0.00 0.00 0.00 2.17
189 196 4.519147 GAGAAAAGACGACTGCAAAGAAC 58.481 43.478 0.00 0.00 0.00 3.01
262 269 1.719709 GCGACCGAAAATGTAGCCC 59.280 57.895 0.00 0.00 0.00 5.19
319 326 3.444034 CCACATCCGAGTTACTCTCAGAA 59.556 47.826 10.83 0.00 42.88 3.02
406 413 5.841957 ATGTTTCTGAATGTAGGGAATGC 57.158 39.130 0.00 0.00 0.00 3.56
416 423 4.791676 CGCACATGAGAATGTTTCTGAATG 59.208 41.667 0.00 2.15 40.87 2.67
439 446 2.014068 GCTGTACAGTGGAATGAGGGC 61.014 57.143 23.44 2.20 0.00 5.19
453 460 2.125512 CGCCTGGTCCTGCTGTAC 60.126 66.667 0.00 0.00 0.00 2.90
557 564 3.672295 GAACAGGGAGGCGCCTGAG 62.672 68.421 38.41 22.17 37.48 3.35
569 576 2.507992 CGCAGGAGCTCGAACAGG 60.508 66.667 7.83 0.00 39.10 4.00
601 608 3.858989 GCTCTTGCTTCTCGGCGC 61.859 66.667 0.00 0.00 36.03 6.53
642 649 1.086634 GCTTGGCTCTCCGTGATGAC 61.087 60.000 0.00 0.00 34.14 3.06
756 782 6.737254 AAAATGTACTTCCACCGACATAAG 57.263 37.500 0.00 0.00 32.31 1.73
870 908 4.023792 TCAGAAACACACAGATGCACATTC 60.024 41.667 0.00 0.00 0.00 2.67
949 1000 3.181458 GGTCTGGCCCATTATTAAGACGA 60.181 47.826 0.00 0.00 35.89 4.20
952 1003 2.105821 CCGGTCTGGCCCATTATTAAGA 59.894 50.000 0.00 0.00 0.00 2.10
1009 3114 2.187163 GGAGCGGCTGGTAAGACC 59.813 66.667 7.50 0.00 39.22 3.85
1188 3293 1.442148 GGATCTCAGGTACGGCCAC 59.558 63.158 2.24 0.00 40.61 5.01
1189 3294 2.125326 CGGATCTCAGGTACGGCCA 61.125 63.158 2.24 0.00 40.61 5.36
1190 3295 1.797211 CTCGGATCTCAGGTACGGCC 61.797 65.000 0.00 0.00 37.58 6.13
1191 3296 1.655329 CTCGGATCTCAGGTACGGC 59.345 63.158 0.00 0.00 0.00 5.68
1192 3297 1.655329 GCTCGGATCTCAGGTACGG 59.345 63.158 0.00 0.00 0.00 4.02
1218 3323 2.828549 CGGCGGGGGATTTTGAGG 60.829 66.667 0.00 0.00 0.00 3.86
1271 3376 1.400494 GAATTGAACGGAATGGACGGG 59.600 52.381 0.00 0.00 35.23 5.28
1283 3388 2.842485 CGAATTCAGCTGCGAATTGAAC 59.158 45.455 25.52 15.79 43.86 3.18
1326 3431 2.365105 ATTCGGGGAGGAAGGCGA 60.365 61.111 0.00 0.00 0.00 5.54
1330 3435 0.671251 CTCTCGATTCGGGGAGGAAG 59.329 60.000 6.03 0.00 0.00 3.46
1349 3454 2.402640 ACGCGAATACTCCGAGAATC 57.597 50.000 15.93 0.00 0.00 2.52
1357 3462 2.113289 GAGCTCAGAACGCGAATACTC 58.887 52.381 15.93 6.29 0.00 2.59
1391 3496 4.575973 GCGGCTGCCATGGGAGAT 62.576 66.667 35.08 0.00 35.50 2.75
1453 3558 1.069090 CCGCCGGCTAGCATCTTAA 59.931 57.895 26.68 0.00 0.00 1.85
1983 4094 0.955919 CAAGGGTCAACCGAGAAGCC 60.956 60.000 0.00 0.00 46.96 4.35
2069 4180 1.770658 TCCTGTAATGCCTCATCCAGG 59.229 52.381 14.41 14.41 46.82 4.45
2117 4228 6.013379 GGAATCAGGATACATACCCATCAGAA 60.013 42.308 0.00 0.00 41.41 3.02
2224 4341 6.702972 TCATGGAAATTAAATGCGTGTTTG 57.297 33.333 0.00 0.00 0.00 2.93
2225 4342 7.721286 TTTCATGGAAATTAAATGCGTGTTT 57.279 28.000 0.00 0.00 0.00 2.83
2276 4625 0.100503 AAGGCGACAAACACAACAGC 59.899 50.000 0.00 0.00 0.00 4.40
2299 4648 6.612306 ACAGACACTCTTCTTTTGACAAAAC 58.388 36.000 9.30 0.00 0.00 2.43
2320 4686 4.516698 GCATTCCTCATGGGTTACATACAG 59.483 45.833 0.00 0.00 37.84 2.74
2411 4833 4.116961 TGCATATAGACAACGGTAAGCAC 58.883 43.478 0.00 0.00 0.00 4.40
2565 5025 9.093970 GTAACTTTAAGATTGGTGCAAACTTTT 57.906 29.630 0.00 0.00 37.56 2.27
2706 5167 5.408604 AGTTGGTTCATGTTCGATGTCTTAC 59.591 40.000 0.00 0.00 0.00 2.34
2709 5170 4.008074 AGTTGGTTCATGTTCGATGTCT 57.992 40.909 0.00 0.00 0.00 3.41
2710 5171 6.422776 AATAGTTGGTTCATGTTCGATGTC 57.577 37.500 0.00 0.00 0.00 3.06
2715 5176 3.845775 CGCAAATAGTTGGTTCATGTTCG 59.154 43.478 4.91 0.00 35.10 3.95
2741 5202 6.070481 TGCAATGGACTAGTGTGTAGGAAATA 60.070 38.462 0.00 0.00 0.00 1.40
2759 5220 6.110707 AGCAAATTTCCTTAAGATGCAATGG 58.889 36.000 3.36 0.00 35.08 3.16
2859 5348 7.396339 AGGTGACTTCCTGTAGAAAAAGTTTTT 59.604 33.333 13.35 13.35 37.44 1.94
3306 5800 4.511826 GTGCTACTATACATGGTCCAAAGC 59.488 45.833 0.00 0.00 0.00 3.51
3322 5979 1.550976 GAGGTGCCTTACTGTGCTACT 59.449 52.381 0.00 0.00 0.00 2.57
3323 5980 1.405661 GGAGGTGCCTTACTGTGCTAC 60.406 57.143 0.00 0.00 0.00 3.58
3324 5981 0.902531 GGAGGTGCCTTACTGTGCTA 59.097 55.000 0.00 0.00 0.00 3.49
3349 6006 2.645797 ACAACCCCTTTTTCCTCCGATA 59.354 45.455 0.00 0.00 0.00 2.92
3368 6025 8.491134 AGCTATACCCATTTTACTACATCAACA 58.509 33.333 0.00 0.00 0.00 3.33
3404 6061 5.163622 CGATCCAAGAATGTAGCACCAAAAT 60.164 40.000 0.00 0.00 0.00 1.82
3491 6148 3.678289 TCAGACATGACCAAACAGATGG 58.322 45.455 0.00 0.00 46.38 3.51
3815 6472 6.950619 AGTTCTCCAAGCAAGGAAAGATAAAT 59.049 34.615 0.00 0.00 37.20 1.40
3871 6538 9.606631 AATGCTATAAACTTTACTCCAGAGAAG 57.393 33.333 0.70 0.00 0.00 2.85
3960 6637 3.205338 CGGCAATGATAACATCACCAGA 58.795 45.455 5.46 0.00 43.01 3.86
3980 6657 3.051392 GAAAAGCCCATCCGTGCCG 62.051 63.158 0.00 0.00 0.00 5.69
3998 6675 0.774098 CGTTGTCGTACAGGTTGTCG 59.226 55.000 0.00 0.00 0.00 4.35
4354 7032 4.340617 TCTAAAACATTAAGGTGCCAGGG 58.659 43.478 0.00 0.00 0.00 4.45
4359 7037 9.162764 TCTCAATACTCTAAAACATTAAGGTGC 57.837 33.333 0.00 0.00 0.00 5.01
4443 7121 3.191078 AGAAGCATCTCATGTAGTGCC 57.809 47.619 12.81 2.81 34.62 5.01
4545 7227 2.918131 GCACGAGAAGGCAAACATGTTC 60.918 50.000 12.39 0.00 0.00 3.18
4576 7258 5.753921 ACAGTAAGAACTCACAACAGCTTAC 59.246 40.000 0.00 0.00 38.47 2.34
4579 7261 4.122776 CACAGTAAGAACTCACAACAGCT 58.877 43.478 0.00 0.00 31.97 4.24
4621 7303 2.911819 TTTTAAGGGAATTGCTCGCG 57.088 45.000 0.00 0.00 41.82 5.87
4739 7437 2.040278 AGAAACAGCAAGGCTCACCATA 59.960 45.455 0.00 0.00 36.40 2.74
4742 7440 0.595095 CAGAAACAGCAAGGCTCACC 59.405 55.000 0.00 0.00 36.40 4.02
4749 7448 1.370900 GCACGGCAGAAACAGCAAG 60.371 57.895 0.00 0.00 0.00 4.01
4771 7470 6.619801 AACAGTGCTTTCCAAGTAACTAAG 57.380 37.500 0.00 0.00 0.00 2.18
4811 7513 8.957466 AGTTATCTTTGCAACCCTATCTTAAAC 58.043 33.333 0.00 0.00 0.00 2.01
4812 7514 9.528489 AAGTTATCTTTGCAACCCTATCTTAAA 57.472 29.630 0.00 0.00 0.00 1.52
4822 7524 3.500680 TCCACGAAGTTATCTTTGCAACC 59.499 43.478 0.00 0.00 41.61 3.77
4827 7529 6.475207 CCGTAAATCCACGAAGTTATCTTTG 58.525 40.000 0.00 0.00 44.69 2.77
4832 7534 3.864243 TGCCGTAAATCCACGAAGTTAT 58.136 40.909 0.00 0.00 44.69 1.89
4839 7541 1.006832 CCTTCTGCCGTAAATCCACG 58.993 55.000 0.00 0.00 41.59 4.94
4854 7578 3.188667 CGCCCTTCTTTACTCAAACCTTC 59.811 47.826 0.00 0.00 0.00 3.46
4867 7591 3.950397 TGAAATATCACACGCCCTTCTT 58.050 40.909 0.00 0.00 0.00 2.52
4886 7610 2.416547 GAGCTTCTTTGCAACGCTATGA 59.583 45.455 0.00 0.00 34.99 2.15
4887 7611 2.476854 GGAGCTTCTTTGCAACGCTATG 60.477 50.000 0.00 0.00 34.99 2.23
4888 7612 1.740025 GGAGCTTCTTTGCAACGCTAT 59.260 47.619 0.00 0.00 34.99 2.97
4889 7613 1.156736 GGAGCTTCTTTGCAACGCTA 58.843 50.000 0.00 0.00 34.99 4.26
4892 7616 0.662619 TGTGGAGCTTCTTTGCAACG 59.337 50.000 0.00 0.00 34.99 4.10
4893 7617 1.678101 ACTGTGGAGCTTCTTTGCAAC 59.322 47.619 0.00 0.00 34.99 4.17
4895 7619 1.949525 GAACTGTGGAGCTTCTTTGCA 59.050 47.619 0.00 0.00 34.99 4.08
4896 7620 2.225255 GAGAACTGTGGAGCTTCTTTGC 59.775 50.000 0.00 0.00 0.00 3.68
4897 7621 3.737850 AGAGAACTGTGGAGCTTCTTTG 58.262 45.455 0.00 0.00 0.00 2.77
4898 7622 4.429854 AAGAGAACTGTGGAGCTTCTTT 57.570 40.909 0.00 0.00 0.00 2.52
4899 7623 4.429854 AAAGAGAACTGTGGAGCTTCTT 57.570 40.909 0.00 0.00 0.00 2.52
4900 7624 4.429854 AAAAGAGAACTGTGGAGCTTCT 57.570 40.909 0.00 0.00 0.00 2.85
4901 7625 5.334491 GCTTAAAAGAGAACTGTGGAGCTTC 60.334 44.000 0.00 0.00 0.00 3.86
4902 7626 4.517075 GCTTAAAAGAGAACTGTGGAGCTT 59.483 41.667 0.00 0.00 0.00 3.74
4903 7627 4.068599 GCTTAAAAGAGAACTGTGGAGCT 58.931 43.478 0.00 0.00 0.00 4.09
4907 7631 4.137543 ACCAGCTTAAAAGAGAACTGTGG 58.862 43.478 0.00 0.00 0.00 4.17
4918 7642 5.290493 TCAGAACTCAGACCAGCTTAAAA 57.710 39.130 0.00 0.00 0.00 1.52
4929 7653 2.822561 ACGCTTGAGATCAGAACTCAGA 59.177 45.455 10.09 2.52 43.67 3.27
4961 7685 3.008049 ACCAGTACCTGACCTGAAATGAC 59.992 47.826 0.00 0.00 32.44 3.06
4962 7686 3.248024 ACCAGTACCTGACCTGAAATGA 58.752 45.455 0.00 0.00 32.44 2.57
4963 7687 3.261897 AGACCAGTACCTGACCTGAAATG 59.738 47.826 0.00 0.00 32.44 2.32
4964 7688 3.261897 CAGACCAGTACCTGACCTGAAAT 59.738 47.826 0.00 0.00 34.90 2.17
4965 7689 2.632996 CAGACCAGTACCTGACCTGAAA 59.367 50.000 0.00 0.00 34.90 2.69
4988 7712 1.745141 GCCGGCACTTCAGATCAGAAT 60.745 52.381 24.80 0.00 0.00 2.40
5007 7731 1.681327 TACCTGACCTGAGGACGGC 60.681 63.158 4.99 0.00 36.51 5.68
5008 7732 0.323542 AGTACCTGACCTGAGGACGG 60.324 60.000 4.99 3.62 36.51 4.79
5009 7733 0.811915 CAGTACCTGACCTGAGGACG 59.188 60.000 4.99 0.00 36.51 4.79
5017 7747 2.682494 TCGGGCCAGTACCTGACC 60.682 66.667 4.39 0.00 40.30 4.02
5032 7762 2.638556 ACGGTTCAGATCAGAACTCG 57.361 50.000 24.78 25.19 45.52 4.18
5033 7763 4.865365 CCTTAACGGTTCAGATCAGAACTC 59.135 45.833 24.78 16.15 45.52 3.01
5068 7798 1.221021 GACGGCCCTAACCTGAAGG 59.779 63.158 0.00 0.00 42.17 3.46
5070 7800 0.834687 ACAGACGGCCCTAACCTGAA 60.835 55.000 0.00 0.00 0.00 3.02
5133 7877 1.226773 GCATGCTCAAATCGGCACC 60.227 57.895 11.37 0.00 41.39 5.01
5135 7879 2.763273 CGGCATGCTCAAATCGGCA 61.763 57.895 18.92 0.00 42.80 5.69
5156 7900 0.537188 AGAGGAAGGTATGTGGCGTG 59.463 55.000 0.00 0.00 0.00 5.34
5163 7907 5.902613 TTGCAAATTCAGAGGAAGGTATG 57.097 39.130 0.00 0.00 36.25 2.39
5183 7957 6.873605 AGATTTGCCATATTGCATGATGATTG 59.126 34.615 1.79 0.00 41.70 2.67
5275 8050 2.097299 GCATGCAAATGTTGTTGTCACG 60.097 45.455 14.21 0.00 0.00 4.35
5280 8055 2.809119 ACCATGCATGCAAATGTTGTTG 59.191 40.909 26.68 15.29 0.00 3.33
5281 8056 3.128852 ACCATGCATGCAAATGTTGTT 57.871 38.095 26.68 3.06 0.00 2.83
5282 8057 2.843401 ACCATGCATGCAAATGTTGT 57.157 40.000 26.68 10.61 0.00 3.32
5304 8079 0.117541 TTCAGGTACCTGGCCTACCA 59.882 55.000 35.94 16.50 46.51 3.25
5305 8080 1.141053 CATTCAGGTACCTGGCCTACC 59.859 57.143 35.94 11.00 43.75 3.18
5306 8081 1.838077 ACATTCAGGTACCTGGCCTAC 59.162 52.381 35.94 0.00 43.75 3.18
5307 8082 1.837439 CACATTCAGGTACCTGGCCTA 59.163 52.381 35.94 21.40 43.75 3.93
5308 8083 0.620556 CACATTCAGGTACCTGGCCT 59.379 55.000 35.94 20.63 43.75 5.19
5316 8091 6.072508 GCAAATCTTGTTCTCACATTCAGGTA 60.073 38.462 0.00 0.00 31.06 3.08
5359 8158 6.455360 AGCTGAACAAAGAAAATGAGAACA 57.545 33.333 0.00 0.00 0.00 3.18
5385 8184 6.127647 TGTGCTGTCTGAACAAAGAATTTTCT 60.128 34.615 0.00 0.00 35.03 2.52
5386 8185 6.020360 GTGTGCTGTCTGAACAAAGAATTTTC 60.020 38.462 0.00 0.00 35.03 2.29
5387 8186 5.807011 GTGTGCTGTCTGAACAAAGAATTTT 59.193 36.000 0.00 0.00 35.03 1.82
5389 8188 4.202050 GGTGTGCTGTCTGAACAAAGAATT 60.202 41.667 0.00 0.00 35.66 2.17
5390 8189 3.316308 GGTGTGCTGTCTGAACAAAGAAT 59.684 43.478 0.00 0.00 35.66 2.40
5391 8190 2.682856 GGTGTGCTGTCTGAACAAAGAA 59.317 45.455 0.00 0.00 35.66 2.52
5392 8191 2.288666 GGTGTGCTGTCTGAACAAAGA 58.711 47.619 0.00 0.00 35.66 2.52
5395 8194 0.546122 AGGGTGTGCTGTCTGAACAA 59.454 50.000 0.00 0.00 35.66 2.83
5396 8195 0.179048 CAGGGTGTGCTGTCTGAACA 60.179 55.000 0.00 0.00 0.00 3.18
5397 8196 2.621763 CAGGGTGTGCTGTCTGAAC 58.378 57.895 0.00 0.00 0.00 3.18
5419 8218 1.999051 CATAGCGTCCGTGAGCAAC 59.001 57.895 0.00 0.00 35.48 4.17
5421 8220 2.202743 GCATAGCGTCCGTGAGCA 60.203 61.111 0.00 0.00 35.48 4.26
5426 8225 1.676678 ATCTGGTGCATAGCGTCCGT 61.677 55.000 0.00 0.00 0.00 4.69
5429 8228 1.594862 GTTCATCTGGTGCATAGCGTC 59.405 52.381 0.00 0.00 0.00 5.19
5455 8254 2.159338 CGATTTTGCAATCCAGTCCCTG 60.159 50.000 0.00 0.00 36.18 4.45
5466 8265 8.918961 TTCTTTAAAGAAGTTCGATTTTGCAA 57.081 26.923 23.65 0.00 39.95 4.08
5474 8273 4.212636 CCGGCTTTCTTTAAAGAAGTTCGA 59.787 41.667 29.23 17.97 45.01 3.71
5476 8275 4.795268 CCCGGCTTTCTTTAAAGAAGTTC 58.205 43.478 25.38 18.66 45.01 3.01
5477 8276 3.005472 GCCCGGCTTTCTTTAAAGAAGTT 59.995 43.478 25.38 0.00 45.01 2.66
5485 8284 1.001393 CCTGGCCCGGCTTTCTTTA 60.001 57.895 9.86 0.00 0.00 1.85
5489 8288 4.803908 CTCCCTGGCCCGGCTTTC 62.804 72.222 7.89 0.00 0.00 2.62
5496 8295 1.567357 TAAATTTTGCTCCCTGGCCC 58.433 50.000 0.00 0.00 0.00 5.80
5497 8296 3.912496 ATTAAATTTTGCTCCCTGGCC 57.088 42.857 0.00 0.00 0.00 5.36
5670 8470 0.409092 TACTTACCTGGACGGGGTCA 59.591 55.000 0.00 0.00 38.19 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.