Multiple sequence alignment - TraesCS5B01G470100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G470100 chr5B 100.000 3608 0 0 1 3608 643459743 643463350 0.000000e+00 6663.0
1 TraesCS5B01G470100 chr5B 83.685 1563 215 32 1015 2566 677537454 677538987 0.000000e+00 1437.0
2 TraesCS5B01G470100 chr5B 83.568 1564 215 34 1015 2566 677545043 677543510 0.000000e+00 1426.0
3 TraesCS5B01G470100 chr5D 91.051 2503 110 55 435 2887 512533775 512536213 0.000000e+00 3277.0
4 TraesCS5B01G470100 chr5D 83.301 1563 218 32 1015 2566 537088077 537089607 0.000000e+00 1400.0
5 TraesCS5B01G470100 chr5D 82.971 1562 224 32 1015 2566 537162874 537161345 0.000000e+00 1373.0
6 TraesCS5B01G470100 chr5D 85.468 406 31 15 3168 3565 512536654 512537039 7.260000e-107 398.0
7 TraesCS5B01G470100 chr5D 84.971 346 22 15 14 344 512533307 512533637 1.250000e-84 324.0
8 TraesCS5B01G470100 chr5A 90.637 2104 110 51 828 2887 640724478 640726538 0.000000e+00 2713.0
9 TraesCS5B01G470100 chr5A 80.808 1485 245 35 997 2461 670104870 670103406 0.000000e+00 1127.0
10 TraesCS5B01G470100 chr5A 83.070 443 33 19 438 844 640724030 640724466 7.360000e-97 364.0
11 TraesCS5B01G470100 chr4A 83.483 1562 217 31 1015 2566 632989706 632991236 0.000000e+00 1417.0
12 TraesCS5B01G470100 chr4A 83.483 1562 217 31 1015 2566 632999852 632998322 0.000000e+00 1417.0
13 TraesCS5B01G470100 chr2A 82.111 1582 250 25 1006 2577 18358267 18359825 0.000000e+00 1323.0
14 TraesCS5B01G470100 chr4D 81.197 1521 244 37 997 2496 488468793 488470292 0.000000e+00 1186.0
15 TraesCS5B01G470100 chr4D 80.517 1586 257 36 998 2566 479540651 479542201 0.000000e+00 1170.0
16 TraesCS5B01G470100 chr4D 79.412 748 140 12 1043 1783 479637256 479636516 1.920000e-142 516.0
17 TraesCS5B01G470100 chr4B 79.812 1595 284 33 997 2572 624862967 624861392 0.000000e+00 1127.0
18 TraesCS5B01G470100 chr4B 78.769 796 155 12 995 1783 606818448 606817660 4.130000e-144 521.0
19 TraesCS5B01G470100 chr4B 79.676 679 130 8 1892 2566 606765581 606766255 1.950000e-132 483.0
20 TraesCS5B01G470100 chr6D 75.386 1426 290 49 996 2401 298924487 298925871 1.830000e-177 632.0
21 TraesCS5B01G470100 chrUn 79.412 748 140 12 1043 1783 61732886 61732146 1.920000e-142 516.0
22 TraesCS5B01G470100 chrUn 79.412 748 140 12 1043 1783 61734343 61733603 1.920000e-142 516.0
23 TraesCS5B01G470100 chr1B 100.000 32 0 0 2928 2959 93294334 93294303 3.890000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G470100 chr5B 643459743 643463350 3607 False 6663.0 6663 100.000000 1 3608 1 chr5B.!!$F1 3607
1 TraesCS5B01G470100 chr5B 677537454 677538987 1533 False 1437.0 1437 83.685000 1015 2566 1 chr5B.!!$F2 1551
2 TraesCS5B01G470100 chr5B 677543510 677545043 1533 True 1426.0 1426 83.568000 1015 2566 1 chr5B.!!$R1 1551
3 TraesCS5B01G470100 chr5D 537088077 537089607 1530 False 1400.0 1400 83.301000 1015 2566 1 chr5D.!!$F1 1551
4 TraesCS5B01G470100 chr5D 537161345 537162874 1529 True 1373.0 1373 82.971000 1015 2566 1 chr5D.!!$R1 1551
5 TraesCS5B01G470100 chr5D 512533307 512537039 3732 False 1333.0 3277 87.163333 14 3565 3 chr5D.!!$F2 3551
6 TraesCS5B01G470100 chr5A 640724030 640726538 2508 False 1538.5 2713 86.853500 438 2887 2 chr5A.!!$F1 2449
7 TraesCS5B01G470100 chr5A 670103406 670104870 1464 True 1127.0 1127 80.808000 997 2461 1 chr5A.!!$R1 1464
8 TraesCS5B01G470100 chr4A 632989706 632991236 1530 False 1417.0 1417 83.483000 1015 2566 1 chr4A.!!$F1 1551
9 TraesCS5B01G470100 chr4A 632998322 632999852 1530 True 1417.0 1417 83.483000 1015 2566 1 chr4A.!!$R1 1551
10 TraesCS5B01G470100 chr2A 18358267 18359825 1558 False 1323.0 1323 82.111000 1006 2577 1 chr2A.!!$F1 1571
11 TraesCS5B01G470100 chr4D 488468793 488470292 1499 False 1186.0 1186 81.197000 997 2496 1 chr4D.!!$F2 1499
12 TraesCS5B01G470100 chr4D 479540651 479542201 1550 False 1170.0 1170 80.517000 998 2566 1 chr4D.!!$F1 1568
13 TraesCS5B01G470100 chr4D 479636516 479637256 740 True 516.0 516 79.412000 1043 1783 1 chr4D.!!$R1 740
14 TraesCS5B01G470100 chr4B 624861392 624862967 1575 True 1127.0 1127 79.812000 997 2572 1 chr4B.!!$R2 1575
15 TraesCS5B01G470100 chr4B 606817660 606818448 788 True 521.0 521 78.769000 995 1783 1 chr4B.!!$R1 788
16 TraesCS5B01G470100 chr4B 606765581 606766255 674 False 483.0 483 79.676000 1892 2566 1 chr4B.!!$F1 674
17 TraesCS5B01G470100 chr6D 298924487 298925871 1384 False 632.0 632 75.386000 996 2401 1 chr6D.!!$F1 1405
18 TraesCS5B01G470100 chrUn 61732146 61734343 2197 True 516.0 516 79.412000 1043 1783 2 chrUn.!!$R1 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 560 0.036732 ATTTCTTCACGCCTGCCTGA 59.963 50.0 0.00 0.0 0.00 3.86 F
702 805 0.971386 GAATATTCCCCCGGAGCGTA 59.029 55.0 0.73 0.0 31.21 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 3628 0.034198 TCCAGTTGATCGCCGTGAAA 59.966 50.0 0.00 0.0 0.0 2.69 R
2683 4354 0.039074 CGACTCCTGAGTTGAACGCT 60.039 55.0 8.59 0.0 43.9 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.893398 GGAGTAGCTCCGGTGGTG 59.107 66.667 18.00 0.59 41.08 4.17
47 48 4.249661 AGTCGAGAAAAGCCAAGAGAATC 58.750 43.478 0.00 0.00 0.00 2.52
71 72 7.417612 TCTTCCAAATTTCGTCTTTCTTTCTG 58.582 34.615 0.00 0.00 0.00 3.02
91 103 2.224281 TGACTAGCAAGTTGTGGTGAGG 60.224 50.000 4.48 0.00 38.75 3.86
92 104 1.768870 ACTAGCAAGTTGTGGTGAGGT 59.231 47.619 4.48 0.00 38.75 3.85
96 108 1.747206 GCAAGTTGTGGTGAGGTGAGT 60.747 52.381 4.48 0.00 0.00 3.41
97 109 1.942657 CAAGTTGTGGTGAGGTGAGTG 59.057 52.381 0.00 0.00 0.00 3.51
98 110 0.469917 AGTTGTGGTGAGGTGAGTGG 59.530 55.000 0.00 0.00 0.00 4.00
101 113 1.121407 TGTGGTGAGGTGAGTGGAGG 61.121 60.000 0.00 0.00 0.00 4.30
102 114 2.217038 TGGTGAGGTGAGTGGAGGC 61.217 63.158 0.00 0.00 0.00 4.70
103 115 2.217038 GGTGAGGTGAGTGGAGGCA 61.217 63.158 0.00 0.00 0.00 4.75
104 116 1.294780 GTGAGGTGAGTGGAGGCAG 59.705 63.158 0.00 0.00 0.00 4.85
105 117 1.152247 TGAGGTGAGTGGAGGCAGT 60.152 57.895 0.00 0.00 0.00 4.40
106 118 0.114364 TGAGGTGAGTGGAGGCAGTA 59.886 55.000 0.00 0.00 0.00 2.74
107 119 1.273267 TGAGGTGAGTGGAGGCAGTAT 60.273 52.381 0.00 0.00 0.00 2.12
108 120 1.410882 GAGGTGAGTGGAGGCAGTATC 59.589 57.143 0.00 0.00 0.00 2.24
109 121 0.466124 GGTGAGTGGAGGCAGTATCC 59.534 60.000 0.00 0.00 37.35 2.59
110 122 1.490574 GTGAGTGGAGGCAGTATCCT 58.509 55.000 0.00 0.00 39.67 3.24
111 123 1.834263 GTGAGTGGAGGCAGTATCCTT 59.166 52.381 0.00 0.00 36.38 3.36
127 139 2.051692 TCCTTTCCTCCGGAACTGAAA 58.948 47.619 17.60 17.60 41.87 2.69
201 217 1.932604 GCGAACTGACTCACTGACTGG 60.933 57.143 0.00 0.00 0.00 4.00
210 226 2.171448 ACTCACTGACTGGCTCTGTTTT 59.829 45.455 0.00 0.00 0.00 2.43
219 235 3.879892 ACTGGCTCTGTTTTCTTGTCTTC 59.120 43.478 0.00 0.00 0.00 2.87
224 240 5.277731 GGCTCTGTTTTCTTGTCTTCTTCAG 60.278 44.000 0.00 0.00 0.00 3.02
229 249 7.440556 TCTGTTTTCTTGTCTTCTTCAGATCAG 59.559 37.037 0.00 0.00 32.60 2.90
232 252 7.902387 TTTCTTGTCTTCTTCAGATCAGATG 57.098 36.000 0.00 0.00 32.60 2.90
251 271 0.668706 GAGCCATCGATCCATCACGG 60.669 60.000 0.00 0.00 0.00 4.94
284 304 2.986979 TAGCCACGTCGCACTCCA 60.987 61.111 8.15 0.00 0.00 3.86
285 305 2.348104 TAGCCACGTCGCACTCCAT 61.348 57.895 8.15 0.00 0.00 3.41
286 306 1.884075 TAGCCACGTCGCACTCCATT 61.884 55.000 8.15 0.00 0.00 3.16
287 307 2.740714 GCCACGTCGCACTCCATTC 61.741 63.158 0.00 0.00 0.00 2.67
288 308 1.079819 CCACGTCGCACTCCATTCT 60.080 57.895 0.00 0.00 0.00 2.40
289 309 1.078759 CCACGTCGCACTCCATTCTC 61.079 60.000 0.00 0.00 0.00 2.87
290 310 0.109086 CACGTCGCACTCCATTCTCT 60.109 55.000 0.00 0.00 0.00 3.10
291 311 0.603569 ACGTCGCACTCCATTCTCTT 59.396 50.000 0.00 0.00 0.00 2.85
292 312 1.000955 ACGTCGCACTCCATTCTCTTT 59.999 47.619 0.00 0.00 0.00 2.52
293 313 2.069273 CGTCGCACTCCATTCTCTTTT 58.931 47.619 0.00 0.00 0.00 2.27
294 314 2.092838 CGTCGCACTCCATTCTCTTTTC 59.907 50.000 0.00 0.00 0.00 2.29
300 320 5.049129 CGCACTCCATTCTCTTTTCTTTTCT 60.049 40.000 0.00 0.00 0.00 2.52
303 323 7.708322 GCACTCCATTCTCTTTTCTTTTCTTTT 59.292 33.333 0.00 0.00 0.00 2.27
351 400 6.607198 AGGCAAGGCAATATATTTACACTTGT 59.393 34.615 19.09 0.00 37.12 3.16
352 401 6.697019 GGCAAGGCAATATATTTACACTTGTG 59.303 38.462 19.09 0.00 37.12 3.33
353 402 7.257722 GCAAGGCAATATATTTACACTTGTGT 58.742 34.615 19.09 11.30 37.12 3.72
367 416 1.330521 CTTGTGTGTGCGCAACTAGTT 59.669 47.619 14.00 1.12 39.84 2.24
371 420 2.993899 GTGTGTGCGCAACTAGTTCTAT 59.006 45.455 14.00 0.00 0.00 1.98
372 421 4.171005 GTGTGTGCGCAACTAGTTCTATA 58.829 43.478 14.00 0.00 0.00 1.31
373 422 4.804139 GTGTGTGCGCAACTAGTTCTATAT 59.196 41.667 14.00 0.00 0.00 0.86
374 423 5.975344 GTGTGTGCGCAACTAGTTCTATATA 59.025 40.000 14.00 0.00 0.00 0.86
401 454 4.729227 TTTCCTTTGAAAAGTCCACACC 57.271 40.909 2.33 0.00 37.53 4.16
403 456 1.686587 CCTTTGAAAAGTCCACACCCC 59.313 52.381 2.33 0.00 34.20 4.95
428 481 1.873572 CATGCGATGCGAGTGTCGA 60.874 57.895 0.00 0.00 43.74 4.20
429 482 1.153842 ATGCGATGCGAGTGTCGAA 60.154 52.632 0.00 0.00 43.74 3.71
430 483 1.413767 ATGCGATGCGAGTGTCGAAC 61.414 55.000 0.00 0.00 43.74 3.95
431 484 2.086426 GCGATGCGAGTGTCGAACA 61.086 57.895 0.00 0.00 43.74 3.18
432 485 1.983907 CGATGCGAGTGTCGAACAG 59.016 57.895 0.00 0.00 43.74 3.16
433 486 0.729478 CGATGCGAGTGTCGAACAGT 60.729 55.000 0.00 0.00 43.74 3.55
464 539 2.355310 CGTCACCTTATAACTTGCCCCA 60.355 50.000 0.00 0.00 0.00 4.96
465 540 3.692690 GTCACCTTATAACTTGCCCCAA 58.307 45.455 0.00 0.00 0.00 4.12
474 549 7.310361 CCTTATAACTTGCCCCAAATTTCTTCA 60.310 37.037 0.00 0.00 0.00 3.02
475 550 3.751479 ACTTGCCCCAAATTTCTTCAC 57.249 42.857 0.00 0.00 0.00 3.18
482 557 1.669795 CCAAATTTCTTCACGCCTGCC 60.670 52.381 0.00 0.00 0.00 4.85
485 560 0.036732 ATTTCTTCACGCCTGCCTGA 59.963 50.000 0.00 0.00 0.00 3.86
503 578 3.249091 CTGACTCCTTGATCGTGACAAG 58.751 50.000 0.00 0.00 42.72 3.16
534 609 2.246327 TGGTTTCCTCTTTTCCAACCCT 59.754 45.455 0.00 0.00 36.78 4.34
545 624 4.463050 TTTCCAACCCTACCTCAACAAT 57.537 40.909 0.00 0.00 0.00 2.71
554 633 2.341846 ACCTCAACAATCACAACCGT 57.658 45.000 0.00 0.00 0.00 4.83
575 654 2.922384 ACGCACGAATATCTCATCTCG 58.078 47.619 0.00 0.00 37.33 4.04
576 655 1.646238 CGCACGAATATCTCATCTCGC 59.354 52.381 0.00 0.00 34.70 5.03
579 658 3.240884 CACGAATATCTCATCTCGCCTG 58.759 50.000 0.00 0.00 34.70 4.85
581 660 3.570125 ACGAATATCTCATCTCGCCTGAA 59.430 43.478 0.00 0.00 34.70 3.02
582 661 4.038042 ACGAATATCTCATCTCGCCTGAAA 59.962 41.667 0.00 0.00 34.70 2.69
583 662 4.984785 CGAATATCTCATCTCGCCTGAAAA 59.015 41.667 0.00 0.00 0.00 2.29
589 684 4.566759 TCTCATCTCGCCTGAAAAATAACG 59.433 41.667 0.00 0.00 0.00 3.18
595 690 4.976987 TCGCCTGAAAAATAACGGATTTC 58.023 39.130 0.00 0.00 36.71 2.17
602 697 9.129209 CCTGAAAAATAACGGATTTCTCTTTTC 57.871 33.333 0.00 0.00 36.71 2.29
659 762 7.703621 CAGATATGATTTTCTCGCCAACAAAAT 59.296 33.333 0.00 0.00 33.39 1.82
694 797 2.033602 CCGGGCGAATATTCCCCC 59.966 66.667 23.45 23.45 41.06 5.40
699 802 1.671379 GCGAATATTCCCCCGGAGC 60.671 63.158 0.73 2.04 31.21 4.70
702 805 0.971386 GAATATTCCCCCGGAGCGTA 59.029 55.000 0.73 0.00 31.21 4.42
725 828 1.199624 CAAAAACAACTGTCAGCCGC 58.800 50.000 0.00 0.00 0.00 6.53
791 895 4.412843 ACGATCCCACCAAAATACCTTTT 58.587 39.130 0.00 0.00 34.90 2.27
846 984 4.475135 GAGTCCCGGGGAAGCAGC 62.475 72.222 23.50 4.75 31.38 5.25
848 986 4.785453 GTCCCGGGGAAGCAGCAG 62.785 72.222 23.50 0.00 31.38 4.24
868 1006 2.965831 AGGAGCCGCAGTATTTATCTCA 59.034 45.455 0.00 0.00 0.00 3.27
869 1007 3.580458 AGGAGCCGCAGTATTTATCTCAT 59.420 43.478 0.00 0.00 0.00 2.90
870 1008 3.929610 GGAGCCGCAGTATTTATCTCATC 59.070 47.826 0.00 0.00 0.00 2.92
871 1009 4.322349 GGAGCCGCAGTATTTATCTCATCT 60.322 45.833 0.00 0.00 0.00 2.90
872 1010 4.815269 AGCCGCAGTATTTATCTCATCTC 58.185 43.478 0.00 0.00 0.00 2.75
873 1011 4.526262 AGCCGCAGTATTTATCTCATCTCT 59.474 41.667 0.00 0.00 0.00 3.10
874 1012 4.862018 GCCGCAGTATTTATCTCATCTCTC 59.138 45.833 0.00 0.00 0.00 3.20
875 1013 5.565637 GCCGCAGTATTTATCTCATCTCTCA 60.566 44.000 0.00 0.00 0.00 3.27
900 1038 3.917760 CGACGCCCTCCATCCTCC 61.918 72.222 0.00 0.00 0.00 4.30
903 1041 3.237741 CGCCCTCCATCCTCCTCC 61.238 72.222 0.00 0.00 0.00 4.30
933 1071 6.353429 CCACCCTAAAATCTCCAATCTTCTCT 60.353 42.308 0.00 0.00 0.00 3.10
935 1073 7.066766 CACCCTAAAATCTCCAATCTTCTCTTG 59.933 40.741 0.00 0.00 0.00 3.02
936 1074 7.037297 ACCCTAAAATCTCCAATCTTCTCTTGA 60.037 37.037 0.00 0.00 0.00 3.02
937 1075 7.281999 CCCTAAAATCTCCAATCTTCTCTTGAC 59.718 40.741 0.00 0.00 0.00 3.18
938 1076 7.826252 CCTAAAATCTCCAATCTTCTCTTGACA 59.174 37.037 0.00 0.00 0.00 3.58
944 1094 4.347876 TCCAATCTTCTCTTGACAGGAACA 59.652 41.667 0.00 0.00 0.00 3.18
952 1102 4.543590 TCTTGACAGGAACAAGAGATCC 57.456 45.455 0.00 0.00 45.44 3.36
980 1130 1.872197 GATCCCCGGCGAGAGATCAG 61.872 65.000 21.02 0.00 36.09 2.90
1980 3628 3.395941 AGAACCTGTTCCAGAAGGACATT 59.604 43.478 6.41 0.00 45.73 2.71
2298 3946 1.056660 ACTCCACCACCTTCATCGTT 58.943 50.000 0.00 0.00 0.00 3.85
2577 4225 2.405594 CGCGAGAACGAGGAGGAG 59.594 66.667 0.00 0.00 42.66 3.69
2581 4241 3.418744 GAGAACGAGGAGGAGGCGC 62.419 68.421 0.00 0.00 0.00 6.53
2612 4272 2.604174 CGGTGCCCGTGTGAGAAAC 61.604 63.158 5.56 0.00 42.73 2.78
2626 4286 3.846896 GTGAGAAACACGTCGTCAGATAG 59.153 47.826 0.00 0.00 39.78 2.08
2639 4305 7.148606 ACGTCGTCAGATAGTAGTATATTCTGC 60.149 40.741 0.00 0.00 0.00 4.26
2640 4306 7.174746 GTCGTCAGATAGTAGTATATTCTGCG 58.825 42.308 12.41 12.41 0.00 5.18
2641 4307 7.063191 GTCGTCAGATAGTAGTATATTCTGCGA 59.937 40.741 14.92 14.92 33.62 5.10
2642 4308 7.275999 TCGTCAGATAGTAGTATATTCTGCGAG 59.724 40.741 14.92 6.16 32.90 5.03
2667 4338 4.168675 AGGTTTGGATGGATGTATGGATGT 59.831 41.667 0.00 0.00 0.00 3.06
2702 4373 0.039074 AGCGTTCAACTCAGGAGTCG 60.039 55.000 1.86 3.40 41.58 4.18
2703 4374 0.039437 GCGTTCAACTCAGGAGTCGA 60.039 55.000 11.08 0.00 41.58 4.20
2704 4375 1.970447 CGTTCAACTCAGGAGTCGAG 58.030 55.000 1.86 0.00 41.58 4.04
2705 4376 1.267261 CGTTCAACTCAGGAGTCGAGT 59.733 52.381 1.86 0.00 45.62 4.18
2706 4377 2.666069 CGTTCAACTCAGGAGTCGAGTC 60.666 54.545 12.02 12.02 42.90 3.36
2707 4378 1.157585 TCAACTCAGGAGTCGAGTCG 58.842 55.000 13.95 6.09 42.90 4.18
2708 4379 1.157585 CAACTCAGGAGTCGAGTCGA 58.842 55.000 12.09 12.09 42.90 4.20
2709 4380 1.129624 CAACTCAGGAGTCGAGTCGAG 59.870 57.143 17.12 18.29 42.90 4.04
2710 4381 0.322322 ACTCAGGAGTCGAGTCGAGT 59.678 55.000 22.49 22.49 39.56 4.18
2723 4394 3.424565 CGAGTCGAGTCGAGTACAACAAT 60.425 47.826 33.61 0.00 42.85 2.71
2724 4395 4.201656 CGAGTCGAGTCGAGTACAACAATA 60.202 45.833 33.61 0.00 42.85 1.90
2726 4397 6.192234 AGTCGAGTCGAGTACAACAATAAT 57.808 37.500 21.10 0.00 37.79 1.28
2728 4399 7.088905 AGTCGAGTCGAGTACAACAATAATTT 58.911 34.615 21.10 0.00 37.79 1.82
2729 4400 8.239314 AGTCGAGTCGAGTACAACAATAATTTA 58.761 33.333 21.10 0.00 37.79 1.40
2731 4402 9.229784 TCGAGTCGAGTACAACAATAATTTATC 57.770 33.333 12.09 0.00 0.00 1.75
2769 4444 4.868734 GTCGAGTTGTCCAGGTTAATTAGG 59.131 45.833 0.00 0.00 0.00 2.69
2771 4446 3.945921 GAGTTGTCCAGGTTAATTAGGGC 59.054 47.826 0.00 0.00 0.00 5.19
2777 4452 1.678101 CAGGTTAATTAGGGCTGCTGC 59.322 52.381 7.10 7.10 38.76 5.25
2786 4461 1.144936 GGGCTGCTGCTCGAGTTAT 59.855 57.895 15.13 0.00 39.59 1.89
2787 4462 0.462759 GGGCTGCTGCTCGAGTTATT 60.463 55.000 15.13 0.00 39.59 1.40
2790 4465 1.524776 GCTGCTGCTCGAGTTATTAGC 59.475 52.381 15.13 15.47 36.77 3.09
2802 4477 8.460428 GCTCGAGTTATTAGCAGTAATATAGGT 58.540 37.037 15.13 0.00 36.26 3.08
2805 4480 9.699985 CGAGTTATTAGCAGTAATATAGGTACG 57.300 37.037 0.00 0.00 32.28 3.67
2807 4482 9.525826 AGTTATTAGCAGTAATATAGGTACGGT 57.474 33.333 0.00 0.00 32.28 4.83
2808 4483 9.565213 GTTATTAGCAGTAATATAGGTACGGTG 57.435 37.037 0.00 0.00 32.28 4.94
2809 4484 7.771927 ATTAGCAGTAATATAGGTACGGTGT 57.228 36.000 0.00 0.00 0.00 4.16
2810 4485 8.868522 ATTAGCAGTAATATAGGTACGGTGTA 57.131 34.615 0.00 0.00 0.00 2.90
2812 4487 7.771927 AGCAGTAATATAGGTACGGTGTAAT 57.228 36.000 0.00 0.00 0.00 1.89
2813 4488 8.868522 AGCAGTAATATAGGTACGGTGTAATA 57.131 34.615 0.00 0.00 0.00 0.98
2814 4489 8.734386 AGCAGTAATATAGGTACGGTGTAATAC 58.266 37.037 0.00 0.00 0.00 1.89
2834 4511 3.589988 ACCAAGTTAGAGAAGTGCATCG 58.410 45.455 0.00 0.00 0.00 3.84
2858 4535 5.277857 AGAGGCAAAGCTTATATGTACGT 57.722 39.130 0.00 0.00 0.00 3.57
2861 4538 4.809426 AGGCAAAGCTTATATGTACGTGAC 59.191 41.667 0.00 0.00 0.00 3.67
2862 4539 4.317839 GGCAAAGCTTATATGTACGTGACG 60.318 45.833 2.24 2.24 0.00 4.35
2863 4540 4.266976 GCAAAGCTTATATGTACGTGACGT 59.733 41.667 17.03 17.03 44.35 4.34
2864 4541 5.714272 CAAAGCTTATATGTACGTGACGTG 58.286 41.667 22.16 1.86 41.39 4.49
2869 4546 5.457799 GCTTATATGTACGTGACGTGTGATT 59.542 40.000 22.16 5.46 41.39 2.57
2875 4552 4.508492 TGTACGTGACGTGTGATTGAAAAT 59.492 37.500 22.16 0.00 41.39 1.82
2887 4564 8.433893 CGTGTGATTGAAAATTTTCATGCATTA 58.566 29.630 29.13 16.51 45.65 1.90
2896 4573 9.394767 GAAAATTTTCATGCATTATAAGGGGTT 57.605 29.630 23.06 0.00 37.15 4.11
2898 4575 9.752228 AAATTTTCATGCATTATAAGGGGTTTT 57.248 25.926 0.00 0.00 0.00 2.43
2900 4577 5.275067 TCATGCATTATAAGGGGTTTTGC 57.725 39.130 0.00 0.00 0.00 3.68
2901 4578 4.713814 TCATGCATTATAAGGGGTTTTGCA 59.286 37.500 9.41 9.41 42.15 4.08
2903 4580 6.552725 TCATGCATTATAAGGGGTTTTGCATA 59.447 34.615 16.17 6.59 44.84 3.14
2904 4581 6.992664 TGCATTATAAGGGGTTTTGCATAT 57.007 33.333 4.04 0.00 34.03 1.78
2905 4582 7.372260 TGCATTATAAGGGGTTTTGCATATT 57.628 32.000 4.04 0.00 34.03 1.28
2906 4583 7.800092 TGCATTATAAGGGGTTTTGCATATTT 58.200 30.769 4.04 0.00 34.03 1.40
2907 4584 8.270744 TGCATTATAAGGGGTTTTGCATATTTT 58.729 29.630 4.04 0.00 34.03 1.82
2915 4592 7.272244 AGGGGTTTTGCATATTTTAATACTGC 58.728 34.615 0.00 0.00 0.00 4.40
2916 4593 7.044798 GGGGTTTTGCATATTTTAATACTGCA 58.955 34.615 11.83 11.83 35.56 4.41
2917 4594 7.714813 GGGGTTTTGCATATTTTAATACTGCAT 59.285 33.333 14.48 0.00 36.38 3.96
2918 4595 9.757227 GGGTTTTGCATATTTTAATACTGCATA 57.243 29.630 14.48 10.30 36.38 3.14
2940 4617 8.429493 CATATGCATAACCTACATATGGACTG 57.571 38.462 11.13 0.00 45.03 3.51
2941 4618 6.686484 ATGCATAACCTACATATGGACTGA 57.314 37.500 7.80 0.00 34.53 3.41
2942 4619 6.493189 TGCATAACCTACATATGGACTGAA 57.507 37.500 7.80 0.00 32.54 3.02
2943 4620 6.894682 TGCATAACCTACATATGGACTGAAA 58.105 36.000 7.80 0.00 32.54 2.69
2945 4622 7.445096 TGCATAACCTACATATGGACTGAAATG 59.555 37.037 7.80 4.12 32.54 2.32
2946 4623 7.661437 GCATAACCTACATATGGACTGAAATGA 59.339 37.037 7.80 0.00 32.54 2.57
2947 4624 8.993121 CATAACCTACATATGGACTGAAATGAC 58.007 37.037 7.80 0.00 0.00 3.06
2948 4625 6.814954 ACCTACATATGGACTGAAATGACT 57.185 37.500 7.80 0.00 0.00 3.41
2949 4626 6.586344 ACCTACATATGGACTGAAATGACTG 58.414 40.000 7.80 0.00 0.00 3.51
2950 4627 6.384015 ACCTACATATGGACTGAAATGACTGA 59.616 38.462 7.80 0.00 0.00 3.41
2951 4628 7.092891 ACCTACATATGGACTGAAATGACTGAA 60.093 37.037 7.80 0.00 0.00 3.02
2952 4629 6.992063 ACATATGGACTGAAATGACTGAAC 57.008 37.500 7.80 0.00 0.00 3.18
2953 4630 6.475504 ACATATGGACTGAAATGACTGAACA 58.524 36.000 7.80 0.00 0.00 3.18
2954 4631 6.942005 ACATATGGACTGAAATGACTGAACAA 59.058 34.615 7.80 0.00 0.00 2.83
2955 4632 7.448161 ACATATGGACTGAAATGACTGAACAAA 59.552 33.333 7.80 0.00 0.00 2.83
2956 4633 5.499139 TGGACTGAAATGACTGAACAAAC 57.501 39.130 0.00 0.00 0.00 2.93
2957 4634 4.946772 TGGACTGAAATGACTGAACAAACA 59.053 37.500 0.00 0.00 0.00 2.83
2958 4635 5.163663 TGGACTGAAATGACTGAACAAACAC 60.164 40.000 0.00 0.00 0.00 3.32
2959 4636 4.908736 ACTGAAATGACTGAACAAACACG 58.091 39.130 0.00 0.00 0.00 4.49
2960 4637 3.690422 TGAAATGACTGAACAAACACGC 58.310 40.909 0.00 0.00 0.00 5.34
2962 4639 3.338818 AATGACTGAACAAACACGCTG 57.661 42.857 0.00 0.00 0.00 5.18
2963 4640 2.017138 TGACTGAACAAACACGCTGA 57.983 45.000 0.00 0.00 0.00 4.26
2964 4641 2.351455 TGACTGAACAAACACGCTGAA 58.649 42.857 0.00 0.00 0.00 3.02
2966 4643 3.189495 TGACTGAACAAACACGCTGAAAA 59.811 39.130 0.00 0.00 0.00 2.29
2967 4644 4.162812 GACTGAACAAACACGCTGAAAAA 58.837 39.130 0.00 0.00 0.00 1.94
2969 4646 4.562394 ACTGAACAAACACGCTGAAAAATG 59.438 37.500 0.00 0.00 0.00 2.32
2970 4647 4.489810 TGAACAAACACGCTGAAAAATGT 58.510 34.783 0.00 0.00 0.00 2.71
2972 4649 5.061560 TGAACAAACACGCTGAAAAATGTTC 59.938 36.000 8.03 8.03 43.36 3.18
2973 4650 4.489810 ACAAACACGCTGAAAAATGTTCA 58.510 34.783 0.00 0.00 34.24 3.18
2974 4651 4.926238 ACAAACACGCTGAAAAATGTTCAA 59.074 33.333 0.00 0.00 34.24 2.69
2976 4653 6.091986 ACAAACACGCTGAAAAATGTTCAATT 59.908 30.769 0.00 0.00 34.24 2.32
2977 4654 5.888412 ACACGCTGAAAAATGTTCAATTC 57.112 34.783 0.00 0.00 0.00 2.17
2978 4655 4.440758 ACACGCTGAAAAATGTTCAATTCG 59.559 37.500 0.00 0.00 0.00 3.34
2979 4656 3.980775 ACGCTGAAAAATGTTCAATTCGG 59.019 39.130 6.93 0.00 0.00 4.30
2980 4657 3.364621 CGCTGAAAAATGTTCAATTCGGG 59.635 43.478 0.00 0.00 0.00 5.14
2981 4658 4.555262 GCTGAAAAATGTTCAATTCGGGA 58.445 39.130 0.00 0.00 0.00 5.14
2982 4659 4.987912 GCTGAAAAATGTTCAATTCGGGAA 59.012 37.500 0.00 0.00 0.00 3.97
2983 4660 5.465056 GCTGAAAAATGTTCAATTCGGGAAA 59.535 36.000 0.00 0.00 0.00 3.13
2985 4662 7.466590 GCTGAAAAATGTTCAATTCGGGAAAAA 60.467 33.333 0.00 0.00 0.00 1.94
3010 4687 8.732746 AAGAACAACTTATAACAGTGAACAGT 57.267 30.769 0.00 0.00 37.03 3.55
3011 4688 8.732746 AGAACAACTTATAACAGTGAACAGTT 57.267 30.769 0.00 0.00 0.00 3.16
3012 4689 8.827677 AGAACAACTTATAACAGTGAACAGTTC 58.172 33.333 6.32 6.32 0.00 3.01
3013 4690 8.732746 AACAACTTATAACAGTGAACAGTTCT 57.267 30.769 14.51 0.00 0.00 3.01
3015 4692 9.826574 ACAACTTATAACAGTGAACAGTTCTAA 57.173 29.630 14.51 2.46 0.00 2.10
3038 4855 4.178545 AGCATTTACTTTCATGTGTGGC 57.821 40.909 0.00 0.00 0.00 5.01
3040 4857 3.500982 CATTTACTTTCATGTGTGGCGG 58.499 45.455 0.00 0.00 0.00 6.13
3043 4867 2.489938 ACTTTCATGTGTGGCGGTAT 57.510 45.000 0.00 0.00 0.00 2.73
3044 4868 2.083774 ACTTTCATGTGTGGCGGTATG 58.916 47.619 0.00 0.00 0.00 2.39
3046 4870 2.481289 TTCATGTGTGGCGGTATGAA 57.519 45.000 0.00 0.00 37.25 2.57
3047 4871 2.481289 TCATGTGTGGCGGTATGAAA 57.519 45.000 0.00 0.00 0.00 2.69
3050 4874 2.552599 TGTGTGGCGGTATGAAAAGA 57.447 45.000 0.00 0.00 0.00 2.52
3051 4875 2.147958 TGTGTGGCGGTATGAAAAGAC 58.852 47.619 0.00 0.00 0.00 3.01
3057 4881 2.227865 GGCGGTATGAAAAGACTTTGCA 59.772 45.455 11.12 11.12 0.00 4.08
3058 4882 3.234386 GCGGTATGAAAAGACTTTGCAC 58.766 45.455 10.94 0.00 0.00 4.57
3064 4888 5.859205 ATGAAAAGACTTTGCACCTCTTT 57.141 34.783 10.94 6.62 36.08 2.52
3117 4941 1.165270 GGATCACGGGTTTCACTTGG 58.835 55.000 0.00 0.00 0.00 3.61
3119 4943 1.535462 GATCACGGGTTTCACTTGGTG 59.465 52.381 0.00 0.00 34.45 4.17
3120 4944 0.542333 TCACGGGTTTCACTTGGTGA 59.458 50.000 0.00 0.00 41.09 4.02
3122 4946 0.812412 ACGGGTTTCACTTGGTGACG 60.812 55.000 0.00 3.84 42.60 4.35
3123 4947 1.503818 CGGGTTTCACTTGGTGACGG 61.504 60.000 0.00 0.00 42.60 4.79
3125 4949 0.942252 GGTTTCACTTGGTGACGGTC 59.058 55.000 0.00 0.00 42.60 4.79
3126 4950 0.580104 GTTTCACTTGGTGACGGTCG 59.420 55.000 3.34 0.00 42.60 4.79
3127 4951 0.531090 TTTCACTTGGTGACGGTCGG 60.531 55.000 3.34 0.00 42.60 4.79
3128 4952 1.678598 TTCACTTGGTGACGGTCGGT 61.679 55.000 3.34 0.00 42.60 4.69
3129 4953 1.663702 CACTTGGTGACGGTCGGTC 60.664 63.158 3.34 3.66 46.27 4.79
3155 4999 0.961857 TCGATGACGAAGGAACGGGA 60.962 55.000 0.00 0.00 45.74 5.14
3156 5000 0.102481 CGATGACGAAGGAACGGGAT 59.898 55.000 0.00 0.00 42.66 3.85
3157 5001 1.571919 GATGACGAAGGAACGGGATG 58.428 55.000 0.00 0.00 37.61 3.51
3158 5002 0.462047 ATGACGAAGGAACGGGATGC 60.462 55.000 0.00 0.00 37.61 3.91
3159 5003 1.079405 GACGAAGGAACGGGATGCA 60.079 57.895 0.00 0.00 37.61 3.96
3160 5004 0.462047 GACGAAGGAACGGGATGCAT 60.462 55.000 0.00 0.00 37.61 3.96
3161 5005 0.744414 ACGAAGGAACGGGATGCATG 60.744 55.000 2.46 0.00 37.61 4.06
3162 5006 1.439353 CGAAGGAACGGGATGCATGG 61.439 60.000 2.46 0.00 0.00 3.66
3163 5007 1.728490 GAAGGAACGGGATGCATGGC 61.728 60.000 2.46 0.00 0.00 4.40
3164 5008 3.585990 GGAACGGGATGCATGGCG 61.586 66.667 2.46 0.00 0.00 5.69
3165 5009 4.256090 GAACGGGATGCATGGCGC 62.256 66.667 2.46 0.00 42.89 6.53
3186 5030 3.862124 CGAGAGGTGCAAACGAGG 58.138 61.111 0.00 0.00 0.00 4.63
3202 5046 1.888391 CGAGGATCTGGATGGATCGGA 60.888 57.143 0.00 0.00 41.99 4.55
3211 5055 0.602372 GATGGATCGGAGCAGCTTCC 60.602 60.000 0.00 0.00 0.00 3.46
3212 5056 1.053264 ATGGATCGGAGCAGCTTCCT 61.053 55.000 11.45 0.00 34.96 3.36
3213 5057 1.267574 TGGATCGGAGCAGCTTCCTT 61.268 55.000 11.45 0.00 34.96 3.36
3214 5058 0.531753 GGATCGGAGCAGCTTCCTTC 60.532 60.000 0.00 0.00 34.96 3.46
3215 5059 0.531753 GATCGGAGCAGCTTCCTTCC 60.532 60.000 0.00 0.00 34.96 3.46
3216 5060 1.977293 ATCGGAGCAGCTTCCTTCCC 61.977 60.000 0.00 0.00 34.96 3.97
3217 5061 2.664081 CGGAGCAGCTTCCTTCCCT 61.664 63.158 0.00 0.00 34.96 4.20
3218 5062 1.077858 GGAGCAGCTTCCTTCCCTG 60.078 63.158 0.00 0.00 34.27 4.45
3225 5069 0.038890 GCTTCCTTCCCTGCTTCCTT 59.961 55.000 0.00 0.00 0.00 3.36
3231 5075 0.606401 TTCCCTGCTTCCTTGCTTCG 60.606 55.000 0.00 0.00 0.00 3.79
3232 5076 1.302832 CCCTGCTTCCTTGCTTCGT 60.303 57.895 0.00 0.00 0.00 3.85
3233 5077 0.890996 CCCTGCTTCCTTGCTTCGTT 60.891 55.000 0.00 0.00 0.00 3.85
3251 5095 1.865340 GTTTCCACACTTGGTCGACTC 59.135 52.381 16.46 6.30 44.35 3.36
3256 5100 0.030369 ACACTTGGTCGACTCGTGAC 59.970 55.000 26.77 9.18 35.60 3.67
3257 5101 0.997226 CACTTGGTCGACTCGTGACG 60.997 60.000 16.46 0.00 37.22 4.35
3266 5110 0.179181 GACTCGTGACGGCGATGTTA 60.179 55.000 16.62 0.00 40.29 2.41
3293 5138 1.084289 GATGACAAGTACCGGTTGGC 58.916 55.000 15.04 8.36 39.70 4.52
3308 5153 2.045926 GGCCATGCGGAGACTTGT 60.046 61.111 0.00 0.00 0.00 3.16
3309 5154 1.675641 GGCCATGCGGAGACTTGTT 60.676 57.895 0.00 0.00 0.00 2.83
3310 5155 0.392461 GGCCATGCGGAGACTTGTTA 60.392 55.000 0.00 0.00 0.00 2.41
3311 5156 1.009829 GCCATGCGGAGACTTGTTAG 58.990 55.000 0.00 0.00 0.00 2.34
3339 5184 2.097825 ACGTAGTACCACCATGAGACC 58.902 52.381 0.00 0.00 41.94 3.85
3340 5185 1.065102 CGTAGTACCACCATGAGACCG 59.935 57.143 0.00 0.00 0.00 4.79
3377 5222 1.712081 CAGACGTGCATGTGCTAGC 59.288 57.895 18.17 8.10 42.66 3.42
3382 5227 1.020861 CGTGCATGTGCTAGCTTCCA 61.021 55.000 17.23 10.32 42.66 3.53
3404 5249 2.354203 GCTGATCCGTCACCTTCTTCTT 60.354 50.000 0.00 0.00 0.00 2.52
3406 5251 3.165875 TGATCCGTCACCTTCTTCTTCT 58.834 45.455 0.00 0.00 0.00 2.85
3407 5252 3.193691 TGATCCGTCACCTTCTTCTTCTC 59.806 47.826 0.00 0.00 0.00 2.87
3408 5253 1.893801 TCCGTCACCTTCTTCTTCTCC 59.106 52.381 0.00 0.00 0.00 3.71
3409 5254 1.618837 CCGTCACCTTCTTCTTCTCCA 59.381 52.381 0.00 0.00 0.00 3.86
3410 5255 2.353208 CCGTCACCTTCTTCTTCTCCAG 60.353 54.545 0.00 0.00 0.00 3.86
3430 5275 5.009631 CCAGTTCTTGGTTTCACATATGGA 58.990 41.667 7.80 0.00 42.41 3.41
3486 5336 1.534729 GGCCTACCAAGGTTGAACAG 58.465 55.000 0.00 0.00 45.64 3.16
3499 5349 0.035317 TGAACAGCTTGATGGCTCGT 59.965 50.000 0.00 0.00 41.00 4.18
3503 5353 2.892425 GCTTGATGGCTCGTCCGG 60.892 66.667 0.00 0.00 37.80 5.14
3504 5354 2.892425 CTTGATGGCTCGTCCGGC 60.892 66.667 0.00 0.00 37.80 6.13
3559 5410 0.241213 ATACATCGGCGATCGTCTGG 59.759 55.000 21.25 10.29 40.32 3.86
3562 5413 3.182472 ATCGGCGATCGTCTGGTCG 62.182 63.158 18.14 11.46 40.32 4.79
3563 5414 3.872728 CGGCGATCGTCTGGTCGA 61.873 66.667 18.81 0.00 43.86 4.20
3569 5420 2.882170 ATCGTCTGGTCGATGTGGA 58.118 52.632 0.86 0.00 46.58 4.02
3570 5421 1.403814 ATCGTCTGGTCGATGTGGAT 58.596 50.000 0.86 0.00 46.58 3.41
3571 5422 0.455815 TCGTCTGGTCGATGTGGATG 59.544 55.000 0.00 0.00 34.85 3.51
3572 5423 1.148157 CGTCTGGTCGATGTGGATGC 61.148 60.000 0.00 0.00 0.00 3.91
3573 5424 0.811616 GTCTGGTCGATGTGGATGCC 60.812 60.000 0.00 0.00 0.00 4.40
3574 5425 1.884464 CTGGTCGATGTGGATGCCG 60.884 63.158 0.00 0.00 0.00 5.69
3575 5426 3.272334 GGTCGATGTGGATGCCGC 61.272 66.667 0.00 0.00 34.12 6.53
3576 5427 3.272334 GTCGATGTGGATGCCGCC 61.272 66.667 0.00 0.00 32.22 6.13
3577 5428 4.889856 TCGATGTGGATGCCGCCG 62.890 66.667 0.00 0.00 32.22 6.46
3596 5447 4.379243 CGGCCGGTCAAGCTCACT 62.379 66.667 20.10 0.00 0.00 3.41
3597 5448 2.743928 GGCCGGTCAAGCTCACTG 60.744 66.667 0.00 0.00 0.00 3.66
3598 5449 3.426568 GCCGGTCAAGCTCACTGC 61.427 66.667 1.90 0.00 43.29 4.40
3607 5458 3.876300 GCTCACTGCTTGTACCGG 58.124 61.111 0.00 0.00 38.95 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.893398 CACCACCGGAGCTACTCC 59.107 66.667 9.46 3.42 46.44 3.85
2 3 2.184579 GCACCACCGGAGCTACTC 59.815 66.667 9.46 0.00 36.40 2.59
3 4 3.391382 GGCACCACCGGAGCTACT 61.391 66.667 9.46 0.00 39.22 2.57
18 19 1.636570 GCTTTTCTCGACTTCGGGGC 61.637 60.000 0.00 0.00 40.92 5.80
29 30 5.006386 TGGAAGATTCTCTTGGCTTTTCTC 58.994 41.667 0.00 0.00 36.73 2.87
47 48 7.377131 GTCAGAAAGAAAGACGAAATTTGGAAG 59.623 37.037 7.24 0.00 0.00 3.46
71 72 2.224305 ACCTCACCACAACTTGCTAGTC 60.224 50.000 0.07 0.00 31.99 2.59
127 139 1.322442 GCCTGCCTTTTGAGTTGAGT 58.678 50.000 0.00 0.00 0.00 3.41
180 192 1.000827 CAGTCAGTGAGTCAGTTCGCT 60.001 52.381 0.00 0.00 38.41 4.93
196 212 3.471680 AGACAAGAAAACAGAGCCAGTC 58.528 45.455 0.00 0.00 0.00 3.51
201 217 5.525378 TCTGAAGAAGACAAGAAAACAGAGC 59.475 40.000 0.00 0.00 0.00 4.09
210 226 6.627731 GCTCATCTGATCTGAAGAAGACAAGA 60.628 42.308 6.37 0.00 37.88 3.02
219 235 3.005578 TCGATGGCTCATCTGATCTGAAG 59.994 47.826 6.37 2.42 38.59 3.02
224 240 2.233186 TGGATCGATGGCTCATCTGATC 59.767 50.000 22.89 22.89 42.59 2.92
229 249 2.344950 GTGATGGATCGATGGCTCATC 58.655 52.381 0.54 10.99 37.50 2.92
232 252 0.668706 CCGTGATGGATCGATGGCTC 60.669 60.000 0.54 0.00 42.00 4.70
253 273 2.427740 GCTACGGAGCGATCGAGC 60.428 66.667 21.57 13.95 39.39 5.03
266 286 2.506438 GGAGTGCGACGTGGCTAC 60.506 66.667 23.24 18.01 0.00 3.58
300 320 8.097662 TGGGCTACTTTTGAAAAGAAAAGAAAA 58.902 29.630 23.14 5.07 43.02 2.29
303 323 6.183360 CCTGGGCTACTTTTGAAAAGAAAAGA 60.183 38.462 23.14 3.45 43.02 2.52
314 334 0.890683 CCTTGCCTGGGCTACTTTTG 59.109 55.000 13.05 0.00 42.51 2.44
351 400 2.804697 TAGAACTAGTTGCGCACACA 57.195 45.000 11.12 0.00 0.00 3.72
352 401 7.639162 AATATATAGAACTAGTTGCGCACAC 57.361 36.000 11.12 12.24 0.00 3.82
353 402 8.657074 AAAATATATAGAACTAGTTGCGCACA 57.343 30.769 11.12 0.00 0.00 4.57
381 434 3.028130 GGGTGTGGACTTTTCAAAGGAA 58.972 45.455 4.36 0.00 40.31 3.36
385 438 1.783071 GGGGGTGTGGACTTTTCAAA 58.217 50.000 0.00 0.00 0.00 2.69
419 472 2.022129 GGGCACTGTTCGACACTCG 61.022 63.158 0.00 0.00 42.10 4.18
420 473 1.668151 GGGGCACTGTTCGACACTC 60.668 63.158 0.00 0.00 0.00 3.51
421 474 2.426023 GGGGCACTGTTCGACACT 59.574 61.111 0.00 0.00 0.00 3.55
422 475 3.041940 CGGGGCACTGTTCGACAC 61.042 66.667 0.00 0.00 0.00 3.67
423 476 3.509137 GACGGGGCACTGTTCGACA 62.509 63.158 0.00 0.00 36.00 4.35
424 477 2.737376 GACGGGGCACTGTTCGAC 60.737 66.667 0.00 0.00 36.00 4.20
425 478 3.228017 TGACGGGGCACTGTTCGA 61.228 61.111 0.00 0.00 36.00 3.71
426 479 3.041940 GTGACGGGGCACTGTTCG 61.042 66.667 0.00 0.00 36.00 3.95
428 481 3.802418 GACGTGACGGGGCACTGTT 62.802 63.158 10.66 0.00 36.00 3.16
429 482 4.295119 GACGTGACGGGGCACTGT 62.295 66.667 10.66 0.00 39.42 3.55
430 483 4.293648 TGACGTGACGGGGCACTG 62.294 66.667 10.66 0.00 36.65 3.66
431 484 4.295119 GTGACGTGACGGGGCACT 62.295 66.667 10.66 0.00 36.65 4.40
464 539 1.270550 CAGGCAGGCGTGAAGAAATTT 59.729 47.619 11.29 0.00 34.13 1.82
465 540 0.883833 CAGGCAGGCGTGAAGAAATT 59.116 50.000 11.29 0.00 34.13 1.82
474 549 2.925170 AAGGAGTCAGGCAGGCGT 60.925 61.111 0.00 0.00 0.00 5.68
475 550 2.249413 ATCAAGGAGTCAGGCAGGCG 62.249 60.000 0.00 0.00 0.00 5.52
482 557 3.057245 TCTTGTCACGATCAAGGAGTCAG 60.057 47.826 14.70 0.00 41.52 3.51
485 560 2.353208 GCTCTTGTCACGATCAAGGAGT 60.353 50.000 14.70 0.00 41.52 3.85
503 578 3.078891 AGAGGAAACCAATGAAGGCTC 57.921 47.619 0.00 0.00 0.00 4.70
534 609 3.478857 ACGGTTGTGATTGTTGAGGTA 57.521 42.857 0.00 0.00 0.00 3.08
554 633 3.667166 GCGAGATGAGATATTCGTGCGTA 60.667 47.826 0.00 0.00 35.61 4.42
575 654 6.196079 AGAGAAATCCGTTATTTTTCAGGC 57.804 37.500 11.25 0.00 39.84 4.85
576 655 9.129209 GAAAAGAGAAATCCGTTATTTTTCAGG 57.871 33.333 11.25 0.00 39.84 3.86
625 728 7.223387 GGCGAGAAAATCATATCTGCAATTTTT 59.777 33.333 6.10 0.00 32.90 1.94
630 733 4.198530 TGGCGAGAAAATCATATCTGCAA 58.801 39.130 0.00 0.00 0.00 4.08
659 762 4.141287 CCCGGCATGTTATCTTATTCCAA 58.859 43.478 0.00 0.00 0.00 3.53
694 797 3.001939 AGTTGTTTTTGTTCTACGCTCCG 59.998 43.478 0.00 0.00 0.00 4.63
699 802 4.728608 GCTGACAGTTGTTTTTGTTCTACG 59.271 41.667 3.99 0.00 0.00 3.51
702 805 3.427503 CGGCTGACAGTTGTTTTTGTTCT 60.428 43.478 3.99 0.00 0.00 3.01
725 828 2.279136 CGATTTTACTGGCGAGTCGAAG 59.721 50.000 18.61 14.98 33.21 3.79
791 895 1.375908 GCTGTGAACGCTGGGATCA 60.376 57.895 0.53 0.53 0.00 2.92
846 984 3.243873 TGAGATAAATACTGCGGCTCCTG 60.244 47.826 0.00 0.00 0.00 3.86
847 985 2.965831 TGAGATAAATACTGCGGCTCCT 59.034 45.455 0.00 0.00 0.00 3.69
848 986 3.386768 TGAGATAAATACTGCGGCTCC 57.613 47.619 0.00 0.00 0.00 4.70
857 995 7.327214 GGTGGGATGAGAGATGAGATAAATAC 58.673 42.308 0.00 0.00 0.00 1.89
868 1006 1.109920 CGTCGGGTGGGATGAGAGAT 61.110 60.000 0.00 0.00 0.00 2.75
869 1007 1.753078 CGTCGGGTGGGATGAGAGA 60.753 63.158 0.00 0.00 0.00 3.10
870 1008 2.808315 CGTCGGGTGGGATGAGAG 59.192 66.667 0.00 0.00 0.00 3.20
871 1009 3.458163 GCGTCGGGTGGGATGAGA 61.458 66.667 0.00 0.00 0.00 3.27
872 1010 4.530857 GGCGTCGGGTGGGATGAG 62.531 72.222 0.00 0.00 0.00 2.90
894 1032 2.042930 GTGGGGTGGGAGGAGGAT 59.957 66.667 0.00 0.00 0.00 3.24
900 1038 1.007607 ATTTTAGGGTGGGGTGGGAG 58.992 55.000 0.00 0.00 0.00 4.30
903 1041 1.063942 GGAGATTTTAGGGTGGGGTGG 60.064 57.143 0.00 0.00 0.00 4.61
933 1071 2.305927 GGGGATCTCTTGTTCCTGTCAA 59.694 50.000 0.00 0.00 33.63 3.18
935 1073 1.134670 CGGGGATCTCTTGTTCCTGTC 60.135 57.143 0.00 0.00 33.63 3.51
936 1074 0.905357 CGGGGATCTCTTGTTCCTGT 59.095 55.000 0.00 0.00 33.63 4.00
937 1075 0.179000 CCGGGGATCTCTTGTTCCTG 59.821 60.000 0.00 0.00 33.63 3.86
938 1076 1.627297 GCCGGGGATCTCTTGTTCCT 61.627 60.000 2.18 0.00 33.63 3.36
980 1130 4.821589 CCGCGAGCCCTCCTTGAC 62.822 72.222 8.23 0.00 0.00 3.18
1371 2980 3.950794 GAGCGTGGCCATGACGGAA 62.951 63.158 29.54 0.00 37.30 4.30
1980 3628 0.034198 TCCAGTTGATCGCCGTGAAA 59.966 50.000 0.00 0.00 0.00 2.69
2298 3946 2.838225 GGGAAGATCTCGGCGGGA 60.838 66.667 13.85 13.85 0.00 5.14
2610 4270 7.959689 ATATACTACTATCTGACGACGTGTT 57.040 36.000 4.58 0.00 0.00 3.32
2612 4272 8.163516 CAGAATATACTACTATCTGACGACGTG 58.836 40.741 4.58 0.00 0.00 4.49
2626 4286 4.506886 ACCTGCTCGCAGAATATACTAC 57.493 45.455 19.78 0.00 46.30 2.73
2639 4305 1.019673 CATCCATCCAAACCTGCTCG 58.980 55.000 0.00 0.00 0.00 5.03
2640 4306 2.134789 ACATCCATCCAAACCTGCTC 57.865 50.000 0.00 0.00 0.00 4.26
2641 4307 3.559069 CATACATCCATCCAAACCTGCT 58.441 45.455 0.00 0.00 0.00 4.24
2642 4308 2.624838 CCATACATCCATCCAAACCTGC 59.375 50.000 0.00 0.00 0.00 4.85
2672 4343 1.135199 GTTGAACGCTCTCCGACCATA 60.135 52.381 0.00 0.00 41.02 2.74
2678 4349 0.734253 CCTGAGTTGAACGCTCTCCG 60.734 60.000 0.02 0.00 44.21 4.63
2683 4354 0.039074 CGACTCCTGAGTTGAACGCT 60.039 55.000 8.59 0.00 43.90 5.07
2688 4359 1.157585 CGACTCGACTCCTGAGTTGA 58.842 55.000 14.88 14.88 46.45 3.18
2689 4360 1.129624 CTCGACTCGACTCCTGAGTTG 59.870 57.143 8.04 8.04 46.29 3.16
2702 4373 3.532892 TTGTTGTACTCGACTCGACTC 57.467 47.619 0.00 0.00 0.00 3.36
2703 4374 5.618056 TTATTGTTGTACTCGACTCGACT 57.382 39.130 0.00 0.00 0.00 4.18
2704 4375 6.866179 AATTATTGTTGTACTCGACTCGAC 57.134 37.500 0.00 0.00 0.00 4.20
2705 4376 9.229784 GATAAATTATTGTTGTACTCGACTCGA 57.770 33.333 0.29 0.29 0.00 4.04
2706 4377 9.234384 AGATAAATTATTGTTGTACTCGACTCG 57.766 33.333 0.00 0.00 0.00 4.18
2723 4394 9.489084 CGACCCATCACAAGATTAGATAAATTA 57.511 33.333 0.00 0.00 30.20 1.40
2724 4395 8.210946 TCGACCCATCACAAGATTAGATAAATT 58.789 33.333 0.00 0.00 30.20 1.82
2726 4397 7.119709 TCGACCCATCACAAGATTAGATAAA 57.880 36.000 0.00 0.00 30.20 1.40
2728 4399 5.833667 ACTCGACCCATCACAAGATTAGATA 59.166 40.000 0.00 0.00 30.20 1.98
2729 4400 4.651503 ACTCGACCCATCACAAGATTAGAT 59.348 41.667 0.00 0.00 30.20 1.98
2731 4402 4.392921 ACTCGACCCATCACAAGATTAG 57.607 45.455 0.00 0.00 30.20 1.73
2737 4408 1.270625 GGACAACTCGACCCATCACAA 60.271 52.381 0.00 0.00 0.00 3.33
2769 4444 2.131183 CTAATAACTCGAGCAGCAGCC 58.869 52.381 13.61 0.00 43.56 4.85
2771 4446 2.814269 TGCTAATAACTCGAGCAGCAG 58.186 47.619 13.61 4.86 41.18 4.24
2786 4461 8.690203 TTACACCGTACCTATATTACTGCTAA 57.310 34.615 0.00 0.00 0.00 3.09
2787 4462 8.868522 ATTACACCGTACCTATATTACTGCTA 57.131 34.615 0.00 0.00 0.00 3.49
2807 4482 6.999950 TGCACTTCTCTAACTTGGTATTACA 58.000 36.000 0.00 0.00 0.00 2.41
2808 4483 7.043325 CGATGCACTTCTCTAACTTGGTATTAC 60.043 40.741 0.00 0.00 0.00 1.89
2809 4484 6.978659 CGATGCACTTCTCTAACTTGGTATTA 59.021 38.462 0.00 0.00 0.00 0.98
2810 4485 5.812642 CGATGCACTTCTCTAACTTGGTATT 59.187 40.000 0.00 0.00 0.00 1.89
2812 4487 4.461431 TCGATGCACTTCTCTAACTTGGTA 59.539 41.667 0.00 0.00 0.00 3.25
2813 4488 3.258372 TCGATGCACTTCTCTAACTTGGT 59.742 43.478 0.00 0.00 0.00 3.67
2814 4489 3.849911 TCGATGCACTTCTCTAACTTGG 58.150 45.455 0.00 0.00 0.00 3.61
2820 4495 2.099921 GCCTCTTCGATGCACTTCTCTA 59.900 50.000 0.00 0.00 0.00 2.43
2821 4496 1.134848 GCCTCTTCGATGCACTTCTCT 60.135 52.381 0.00 0.00 0.00 3.10
2822 4497 1.285578 GCCTCTTCGATGCACTTCTC 58.714 55.000 0.00 0.00 0.00 2.87
2825 4502 1.808945 CTTTGCCTCTTCGATGCACTT 59.191 47.619 0.00 0.00 33.35 3.16
2834 4511 5.753921 ACGTACATATAAGCTTTGCCTCTTC 59.246 40.000 3.20 0.00 0.00 2.87
2843 4520 4.796830 CACACGTCACGTACATATAAGCTT 59.203 41.667 0.41 3.48 38.32 3.74
2844 4521 4.095334 TCACACGTCACGTACATATAAGCT 59.905 41.667 0.41 0.00 38.32 3.74
2845 4522 4.345288 TCACACGTCACGTACATATAAGC 58.655 43.478 0.41 0.00 38.32 3.09
2846 4523 6.689669 TCAATCACACGTCACGTACATATAAG 59.310 38.462 0.41 0.00 38.32 1.73
2847 4524 6.553524 TCAATCACACGTCACGTACATATAA 58.446 36.000 0.41 0.00 38.32 0.98
2848 4525 6.121613 TCAATCACACGTCACGTACATATA 57.878 37.500 0.41 0.00 38.32 0.86
2875 4552 6.597280 GCAAAACCCCTTATAATGCATGAAAA 59.403 34.615 0.00 0.00 32.80 2.29
2889 4566 7.768582 GCAGTATTAAAATATGCAAAACCCCTT 59.231 33.333 0.00 0.00 36.88 3.95
2890 4567 7.093112 TGCAGTATTAAAATATGCAAAACCCCT 60.093 33.333 12.98 0.00 43.41 4.79
2891 4568 7.044798 TGCAGTATTAAAATATGCAAAACCCC 58.955 34.615 12.98 0.00 43.41 4.95
2916 4593 8.379428 TCAGTCCATATGTAGGTTATGCATAT 57.621 34.615 7.36 0.00 45.02 1.78
2917 4594 7.790782 TCAGTCCATATGTAGGTTATGCATA 57.209 36.000 1.16 1.16 40.26 3.14
2918 4595 6.686484 TCAGTCCATATGTAGGTTATGCAT 57.314 37.500 3.79 3.79 37.96 3.96
2919 4596 6.493189 TTCAGTCCATATGTAGGTTATGCA 57.507 37.500 1.24 0.00 0.00 3.96
2921 4598 8.993121 GTCATTTCAGTCCATATGTAGGTTATG 58.007 37.037 1.24 0.00 0.00 1.90
2923 4600 8.204160 CAGTCATTTCAGTCCATATGTAGGTTA 58.796 37.037 1.24 0.00 0.00 2.85
2924 4601 7.050377 CAGTCATTTCAGTCCATATGTAGGTT 58.950 38.462 1.24 0.00 0.00 3.50
2926 4603 6.820335 TCAGTCATTTCAGTCCATATGTAGG 58.180 40.000 1.24 0.00 0.00 3.18
2927 4604 7.765819 TGTTCAGTCATTTCAGTCCATATGTAG 59.234 37.037 1.24 0.00 0.00 2.74
2929 4606 6.475504 TGTTCAGTCATTTCAGTCCATATGT 58.524 36.000 1.24 0.00 0.00 2.29
2931 4608 7.448161 TGTTTGTTCAGTCATTTCAGTCCATAT 59.552 33.333 0.00 0.00 0.00 1.78
2932 4609 6.770303 TGTTTGTTCAGTCATTTCAGTCCATA 59.230 34.615 0.00 0.00 0.00 2.74
2933 4610 5.593909 TGTTTGTTCAGTCATTTCAGTCCAT 59.406 36.000 0.00 0.00 0.00 3.41
2934 4611 4.946772 TGTTTGTTCAGTCATTTCAGTCCA 59.053 37.500 0.00 0.00 0.00 4.02
2936 4613 4.963953 CGTGTTTGTTCAGTCATTTCAGTC 59.036 41.667 0.00 0.00 0.00 3.51
2937 4614 4.730613 GCGTGTTTGTTCAGTCATTTCAGT 60.731 41.667 0.00 0.00 0.00 3.41
2938 4615 3.725740 GCGTGTTTGTTCAGTCATTTCAG 59.274 43.478 0.00 0.00 0.00 3.02
2939 4616 3.376859 AGCGTGTTTGTTCAGTCATTTCA 59.623 39.130 0.00 0.00 0.00 2.69
2940 4617 3.725740 CAGCGTGTTTGTTCAGTCATTTC 59.274 43.478 0.00 0.00 0.00 2.17
2941 4618 3.376859 TCAGCGTGTTTGTTCAGTCATTT 59.623 39.130 0.00 0.00 0.00 2.32
2942 4619 2.942376 TCAGCGTGTTTGTTCAGTCATT 59.058 40.909 0.00 0.00 0.00 2.57
2943 4620 2.560504 TCAGCGTGTTTGTTCAGTCAT 58.439 42.857 0.00 0.00 0.00 3.06
2945 4622 3.398954 TTTCAGCGTGTTTGTTCAGTC 57.601 42.857 0.00 0.00 0.00 3.51
2946 4623 3.840890 TTTTCAGCGTGTTTGTTCAGT 57.159 38.095 0.00 0.00 0.00 3.41
2947 4624 4.562394 ACATTTTTCAGCGTGTTTGTTCAG 59.438 37.500 0.00 0.00 0.00 3.02
2948 4625 4.489810 ACATTTTTCAGCGTGTTTGTTCA 58.510 34.783 0.00 0.00 0.00 3.18
2949 4626 5.061560 TGAACATTTTTCAGCGTGTTTGTTC 59.938 36.000 0.00 0.00 41.11 3.18
2950 4627 4.926238 TGAACATTTTTCAGCGTGTTTGTT 59.074 33.333 0.00 0.00 35.15 2.83
2951 4628 4.489810 TGAACATTTTTCAGCGTGTTTGT 58.510 34.783 0.00 0.00 35.15 2.83
2952 4629 5.447478 TTGAACATTTTTCAGCGTGTTTG 57.553 34.783 0.00 0.00 35.15 2.93
2953 4630 6.507771 CGAATTGAACATTTTTCAGCGTGTTT 60.508 34.615 0.00 0.00 35.15 2.83
2954 4631 5.051774 CGAATTGAACATTTTTCAGCGTGTT 60.052 36.000 0.00 0.00 37.49 3.32
2955 4632 4.440758 CGAATTGAACATTTTTCAGCGTGT 59.559 37.500 0.00 0.00 0.00 4.49
2956 4633 4.143556 CCGAATTGAACATTTTTCAGCGTG 60.144 41.667 0.00 0.00 0.00 5.34
2957 4634 3.980775 CCGAATTGAACATTTTTCAGCGT 59.019 39.130 0.00 0.00 0.00 5.07
2958 4635 3.364621 CCCGAATTGAACATTTTTCAGCG 59.635 43.478 0.00 0.00 0.00 5.18
2959 4636 4.555262 TCCCGAATTGAACATTTTTCAGC 58.445 39.130 0.00 0.00 0.00 4.26
2960 4637 7.475771 TTTTCCCGAATTGAACATTTTTCAG 57.524 32.000 0.00 0.00 0.00 3.02
2985 4662 8.732746 ACTGTTCACTGTTATAAGTTGTTCTT 57.267 30.769 0.00 0.00 39.89 2.52
2986 4663 8.732746 AACTGTTCACTGTTATAAGTTGTTCT 57.267 30.769 0.70 0.00 36.47 3.01
2987 4664 8.827677 AGAACTGTTCACTGTTATAAGTTGTTC 58.172 33.333 21.50 0.00 37.99 3.18
2996 4673 9.672673 AATGCTATTAGAACTGTTCACTGTTAT 57.327 29.630 21.50 8.27 37.99 1.89
2998 4675 7.986085 AATGCTATTAGAACTGTTCACTGTT 57.014 32.000 21.50 4.10 40.07 3.16
3011 4688 8.892723 CCACACATGAAAGTAAATGCTATTAGA 58.107 33.333 0.00 0.00 0.00 2.10
3012 4689 7.645340 GCCACACATGAAAGTAAATGCTATTAG 59.355 37.037 0.00 0.00 0.00 1.73
3013 4690 7.479980 GCCACACATGAAAGTAAATGCTATTA 58.520 34.615 0.00 0.00 0.00 0.98
3015 4692 5.449041 CGCCACACATGAAAGTAAATGCTAT 60.449 40.000 0.00 0.00 0.00 2.97
3016 4693 4.142708 CGCCACACATGAAAGTAAATGCTA 60.143 41.667 0.00 0.00 0.00 3.49
3019 4696 3.057596 ACCGCCACACATGAAAGTAAATG 60.058 43.478 0.00 0.00 0.00 2.32
3032 4849 2.423577 AGTCTTTTCATACCGCCACAC 58.576 47.619 0.00 0.00 0.00 3.82
3033 4850 2.851263 AGTCTTTTCATACCGCCACA 57.149 45.000 0.00 0.00 0.00 4.17
3035 4852 2.227865 GCAAAGTCTTTTCATACCGCCA 59.772 45.455 0.00 0.00 0.00 5.69
3036 4853 2.227865 TGCAAAGTCTTTTCATACCGCC 59.772 45.455 0.00 0.00 0.00 6.13
3038 4855 3.502211 AGGTGCAAAGTCTTTTCATACCG 59.498 43.478 0.91 0.00 31.15 4.02
3040 4857 5.948992 AGAGGTGCAAAGTCTTTTCATAC 57.051 39.130 0.91 0.00 0.00 2.39
3043 4867 4.142182 CCAAAGAGGTGCAAAGTCTTTTCA 60.142 41.667 13.77 0.00 38.24 2.69
3044 4868 4.363138 CCAAAGAGGTGCAAAGTCTTTTC 58.637 43.478 13.77 0.00 38.24 2.29
3074 4898 1.616159 ACATGTGCCGCTACCTTTTT 58.384 45.000 0.00 0.00 0.00 1.94
3086 4910 1.062002 CCGTGATCCGTTAACATGTGC 59.938 52.381 0.00 0.00 33.66 4.57
3088 4912 1.276989 ACCCGTGATCCGTTAACATGT 59.723 47.619 6.39 0.00 33.66 3.21
3105 4929 0.464916 ACCGTCACCAAGTGAAACCC 60.465 55.000 0.00 0.00 44.49 4.11
3106 4930 0.942252 GACCGTCACCAAGTGAAACC 59.058 55.000 0.00 0.00 44.49 3.27
3112 4936 2.732658 GACCGACCGTCACCAAGT 59.267 61.111 0.00 0.00 41.54 3.16
3113 4937 2.430244 CGACCGACCGTCACCAAG 60.430 66.667 0.00 0.00 42.07 3.61
3114 4938 3.980989 CCGACCGACCGTCACCAA 61.981 66.667 0.00 0.00 42.07 3.67
3117 4941 4.748679 CGACCGACCGACCGTCAC 62.749 72.222 0.00 0.00 42.07 3.67
3119 4943 3.446175 GATCGACCGACCGACCGTC 62.446 68.421 1.45 0.00 41.70 4.79
3120 4944 3.503363 GATCGACCGACCGACCGT 61.503 66.667 1.45 0.00 41.70 4.83
3122 4946 2.541120 ATCGATCGACCGACCGACC 61.541 63.158 22.06 0.00 43.54 4.79
3123 4947 1.368969 CATCGATCGACCGACCGAC 60.369 63.158 22.06 0.00 43.54 4.79
3125 4949 1.368969 GTCATCGATCGACCGACCG 60.369 63.158 27.35 0.00 41.70 4.79
3126 4950 1.368969 CGTCATCGATCGACCGACC 60.369 63.158 29.56 18.61 41.70 4.79
3127 4951 0.027194 TTCGTCATCGATCGACCGAC 59.973 55.000 27.61 27.61 45.65 4.79
3128 4952 0.303796 CTTCGTCATCGATCGACCGA 59.696 55.000 22.06 23.25 45.65 4.69
3129 4953 0.657659 CCTTCGTCATCGATCGACCG 60.658 60.000 22.06 21.41 45.65 4.79
3130 4954 0.661552 TCCTTCGTCATCGATCGACC 59.338 55.000 22.06 10.44 45.65 4.79
3132 4976 1.267882 CGTTCCTTCGTCATCGATCGA 60.268 52.381 21.86 21.86 45.65 3.59
3141 4985 0.462047 ATGCATCCCGTTCCTTCGTC 60.462 55.000 0.00 0.00 0.00 4.20
3145 4989 1.754234 GCCATGCATCCCGTTCCTT 60.754 57.895 0.00 0.00 0.00 3.36
3147 4991 3.585990 CGCCATGCATCCCGTTCC 61.586 66.667 0.00 0.00 0.00 3.62
3165 5009 3.423154 GTTTGCACCTCTCGGGCG 61.423 66.667 0.00 0.00 39.10 6.13
3166 5010 3.423154 CGTTTGCACCTCTCGGGC 61.423 66.667 0.00 0.00 39.10 6.13
3183 5027 1.824230 CTCCGATCCATCCAGATCCTC 59.176 57.143 0.00 0.00 39.67 3.71
3186 5030 0.972134 TGCTCCGATCCATCCAGATC 59.028 55.000 0.00 0.00 39.47 2.75
3202 5046 2.229928 AGCAGGGAAGGAAGCTGCT 61.230 57.895 0.00 0.00 45.20 4.24
3211 5055 1.172175 GAAGCAAGGAAGCAGGGAAG 58.828 55.000 0.00 0.00 36.85 3.46
3212 5056 0.606401 CGAAGCAAGGAAGCAGGGAA 60.606 55.000 0.00 0.00 36.85 3.97
3213 5057 1.003355 CGAAGCAAGGAAGCAGGGA 60.003 57.895 0.00 0.00 36.85 4.20
3214 5058 0.890996 AACGAAGCAAGGAAGCAGGG 60.891 55.000 0.00 0.00 36.85 4.45
3215 5059 0.954452 AAACGAAGCAAGGAAGCAGG 59.046 50.000 0.00 0.00 36.85 4.85
3216 5060 1.068954 GGAAACGAAGCAAGGAAGCAG 60.069 52.381 0.00 0.00 36.85 4.24
3217 5061 0.951558 GGAAACGAAGCAAGGAAGCA 59.048 50.000 0.00 0.00 36.85 3.91
3218 5062 0.951558 TGGAAACGAAGCAAGGAAGC 59.048 50.000 0.00 0.00 0.00 3.86
3251 5095 2.514013 GCCTAACATCGCCGTCACG 61.514 63.158 0.00 0.00 0.00 4.35
3256 5100 0.739462 TCAACAGCCTAACATCGCCG 60.739 55.000 0.00 0.00 0.00 6.46
3257 5101 1.331756 CATCAACAGCCTAACATCGCC 59.668 52.381 0.00 0.00 0.00 5.54
3266 5110 2.612972 CGGTACTTGTCATCAACAGCCT 60.613 50.000 0.00 0.00 39.58 4.58
3293 5138 1.207089 TCCTAACAAGTCTCCGCATGG 59.793 52.381 0.00 0.00 0.00 3.66
3308 5153 4.181578 GTGGTACTACGTACGACTCCTAA 58.818 47.826 24.41 0.00 41.93 2.69
3309 5154 3.430374 GGTGGTACTACGTACGACTCCTA 60.430 52.174 24.41 1.99 43.68 2.94
3310 5155 2.622436 GTGGTACTACGTACGACTCCT 58.378 52.381 24.41 0.61 41.93 3.69
3311 5156 1.666189 GGTGGTACTACGTACGACTCC 59.334 57.143 24.41 15.72 43.68 3.85
3328 5173 0.174389 CCTCTCACGGTCTCATGGTG 59.826 60.000 0.00 0.00 0.00 4.17
3339 5184 1.436195 CTCTCGGCTCTCCTCTCACG 61.436 65.000 0.00 0.00 0.00 4.35
3340 5185 1.724582 GCTCTCGGCTCTCCTCTCAC 61.725 65.000 0.00 0.00 38.06 3.51
3360 5205 0.036952 AAGCTAGCACATGCACGTCT 60.037 50.000 18.83 0.00 45.16 4.18
3377 5222 3.056628 GTGACGGATCAGCTGGAAG 57.943 57.895 15.13 5.89 34.75 3.46
3387 5232 2.498078 GGAGAAGAAGAAGGTGACGGAT 59.502 50.000 0.00 0.00 0.00 4.18
3408 5253 5.106157 GGTCCATATGTGAAACCAAGAACTG 60.106 44.000 1.24 0.00 34.36 3.16
3409 5254 5.010282 GGTCCATATGTGAAACCAAGAACT 58.990 41.667 1.24 0.00 34.36 3.01
3410 5255 4.764823 TGGTCCATATGTGAAACCAAGAAC 59.235 41.667 12.23 0.00 37.75 3.01
3459 5309 4.124351 TTGGTAGGCCGACGAGCG 62.124 66.667 10.10 0.00 37.67 5.03
3486 5336 2.892425 CCGGACGAGCCATCAAGC 60.892 66.667 0.00 0.00 35.94 4.01
3504 5354 4.489771 CCCTTGGTGCCTAGCGGG 62.490 72.222 0.00 0.00 38.36 6.13
3505 5355 4.489771 CCCCTTGGTGCCTAGCGG 62.490 72.222 0.00 0.00 0.00 5.52
3515 5365 1.377333 GAAAGCGAGGTCCCCTTGG 60.377 63.158 0.00 0.00 35.62 3.61
3559 5410 3.272334 GGCGGCATCCACATCGAC 61.272 66.667 3.07 0.00 0.00 4.20
3579 5430 4.379243 AGTGAGCTTGACCGGCCG 62.379 66.667 21.04 21.04 0.00 6.13
3580 5431 2.743928 CAGTGAGCTTGACCGGCC 60.744 66.667 0.00 0.00 0.00 6.13
3581 5432 3.426568 GCAGTGAGCTTGACCGGC 61.427 66.667 0.00 0.00 41.15 6.13
3590 5441 3.876300 CCGGTACAAGCAGTGAGC 58.124 61.111 0.00 0.00 46.19 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.