Multiple sequence alignment - TraesCS5B01G470000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G470000 | chr5B | 100.000 | 6659 | 0 | 0 | 1 | 6659 | 643407088 | 643400430 | 0.000000e+00 | 12297.0 |
1 | TraesCS5B01G470000 | chr5B | 89.513 | 801 | 56 | 13 | 1 | 776 | 602858964 | 602859761 | 0.000000e+00 | 989.0 |
2 | TraesCS5B01G470000 | chr5B | 87.656 | 802 | 95 | 4 | 5839 | 6638 | 203603835 | 203604634 | 0.000000e+00 | 929.0 |
3 | TraesCS5B01G470000 | chr5B | 87.894 | 793 | 72 | 16 | 4 | 776 | 596986435 | 596985647 | 0.000000e+00 | 911.0 |
4 | TraesCS5B01G470000 | chr5B | 86.257 | 764 | 61 | 25 | 38 | 777 | 578690904 | 578691647 | 0.000000e+00 | 789.0 |
5 | TraesCS5B01G470000 | chr5B | 83.219 | 584 | 82 | 11 | 4710 | 5288 | 302082512 | 302081940 | 7.650000e-144 | 521.0 |
6 | TraesCS5B01G470000 | chr5B | 84.588 | 279 | 37 | 4 | 5289 | 5563 | 302079565 | 302079289 | 8.510000e-69 | 272.0 |
7 | TraesCS5B01G470000 | chr5B | 91.304 | 69 | 4 | 2 | 1 | 68 | 87782927 | 87782994 | 7.110000e-15 | 93.5 |
8 | TraesCS5B01G470000 | chr5B | 92.188 | 64 | 4 | 1 | 4 | 67 | 227957774 | 227957712 | 9.200000e-14 | 89.8 |
9 | TraesCS5B01G470000 | chr5B | 93.220 | 59 | 2 | 2 | 4 | 62 | 54073098 | 54073042 | 1.190000e-12 | 86.1 |
10 | TraesCS5B01G470000 | chr5D | 93.876 | 4131 | 160 | 40 | 1871 | 5959 | 512393327 | 512389248 | 0.000000e+00 | 6141.0 |
11 | TraesCS5B01G470000 | chr5D | 85.024 | 1055 | 111 | 32 | 777 | 1811 | 512397318 | 512396291 | 0.000000e+00 | 1029.0 |
12 | TraesCS5B01G470000 | chr5D | 86.928 | 153 | 16 | 3 | 5585 | 5736 | 421222686 | 421222835 | 1.150000e-37 | 169.0 |
13 | TraesCS5B01G470000 | chr5D | 87.097 | 93 | 12 | 0 | 3636 | 3728 | 542275434 | 542275526 | 9.130000e-19 | 106.0 |
14 | TraesCS5B01G470000 | chr7D | 90.363 | 799 | 75 | 2 | 5841 | 6638 | 274505642 | 274506439 | 0.000000e+00 | 1048.0 |
15 | TraesCS5B01G470000 | chr7D | 87.950 | 805 | 90 | 4 | 5836 | 6638 | 274487605 | 274488404 | 0.000000e+00 | 942.0 |
16 | TraesCS5B01G470000 | chr7D | 88.000 | 800 | 92 | 4 | 5840 | 6637 | 352904447 | 352903650 | 0.000000e+00 | 942.0 |
17 | TraesCS5B01G470000 | chr2D | 88.543 | 803 | 89 | 3 | 5837 | 6638 | 633704187 | 633704987 | 0.000000e+00 | 970.0 |
18 | TraesCS5B01G470000 | chr2D | 84.810 | 553 | 65 | 14 | 39 | 578 | 558292168 | 558291622 | 7.600000e-149 | 538.0 |
19 | TraesCS5B01G470000 | chr2D | 86.184 | 304 | 33 | 7 | 5288 | 5587 | 326778419 | 326778717 | 3.000000e-83 | 320.0 |
20 | TraesCS5B01G470000 | chr1B | 87.920 | 803 | 91 | 6 | 5838 | 6638 | 202577980 | 202578778 | 0.000000e+00 | 941.0 |
21 | TraesCS5B01G470000 | chr1B | 85.820 | 811 | 74 | 17 | 4 | 784 | 632768891 | 632768092 | 0.000000e+00 | 822.0 |
22 | TraesCS5B01G470000 | chr1B | 87.391 | 690 | 57 | 17 | 1 | 679 | 527875656 | 527876326 | 0.000000e+00 | 765.0 |
23 | TraesCS5B01G470000 | chr3D | 88.030 | 802 | 85 | 9 | 5840 | 6638 | 185744206 | 185744999 | 0.000000e+00 | 939.0 |
24 | TraesCS5B01G470000 | chr3D | 84.554 | 751 | 81 | 16 | 39 | 777 | 588313195 | 588312468 | 0.000000e+00 | 712.0 |
25 | TraesCS5B01G470000 | chr3D | 87.302 | 441 | 38 | 12 | 37 | 469 | 605080277 | 605079847 | 7.760000e-134 | 488.0 |
26 | TraesCS5B01G470000 | chr3D | 78.491 | 530 | 104 | 10 | 2078 | 2602 | 3371008 | 3371532 | 8.270000e-89 | 339.0 |
27 | TraesCS5B01G470000 | chr3D | 78.571 | 182 | 33 | 5 | 2709 | 2887 | 3371606 | 3371784 | 1.520000e-21 | 115.0 |
28 | TraesCS5B01G470000 | chr1D | 87.905 | 802 | 91 | 5 | 5839 | 6638 | 209446451 | 209445654 | 0.000000e+00 | 939.0 |
29 | TraesCS5B01G470000 | chr1D | 82.759 | 870 | 128 | 13 | 4710 | 5567 | 114212194 | 114213053 | 0.000000e+00 | 756.0 |
30 | TraesCS5B01G470000 | chr1D | 86.511 | 556 | 58 | 9 | 5019 | 5560 | 141897982 | 141897430 | 4.450000e-166 | 595.0 |
31 | TraesCS5B01G470000 | chrUn | 87.875 | 800 | 93 | 4 | 5841 | 6638 | 264826904 | 264827701 | 0.000000e+00 | 937.0 |
32 | TraesCS5B01G470000 | chrUn | 87.327 | 797 | 66 | 19 | 4 | 776 | 22615399 | 22614614 | 0.000000e+00 | 880.0 |
33 | TraesCS5B01G470000 | chr6B | 88.593 | 789 | 66 | 14 | 11 | 777 | 475813104 | 475813890 | 0.000000e+00 | 937.0 |
34 | TraesCS5B01G470000 | chr6B | 80.632 | 253 | 39 | 6 | 5585 | 5835 | 658617194 | 658617438 | 3.170000e-43 | 187.0 |
35 | TraesCS5B01G470000 | chr6B | 100.000 | 28 | 0 | 0 | 6632 | 6659 | 661684493 | 661684466 | 1.200000e-02 | 52.8 |
36 | TraesCS5B01G470000 | chr2B | 86.891 | 801 | 73 | 22 | 1 | 776 | 574005065 | 574005858 | 0.000000e+00 | 869.0 |
37 | TraesCS5B01G470000 | chr2B | 82.020 | 812 | 76 | 35 | 4 | 793 | 717042118 | 717041355 | 1.580000e-175 | 627.0 |
38 | TraesCS5B01G470000 | chr2B | 77.011 | 261 | 42 | 13 | 5584 | 5839 | 507569245 | 507568998 | 4.190000e-27 | 134.0 |
39 | TraesCS5B01G470000 | chr4A | 84.193 | 892 | 118 | 12 | 4711 | 5584 | 518857284 | 518856398 | 0.000000e+00 | 845.0 |
40 | TraesCS5B01G470000 | chr4A | 83.519 | 898 | 130 | 9 | 4703 | 5584 | 416226879 | 416227774 | 0.000000e+00 | 822.0 |
41 | TraesCS5B01G470000 | chr4A | 85.796 | 697 | 74 | 16 | 37 | 720 | 743251842 | 743252526 | 0.000000e+00 | 715.0 |
42 | TraesCS5B01G470000 | chr4A | 82.895 | 532 | 76 | 10 | 254 | 776 | 743285415 | 743285940 | 1.310000e-126 | 464.0 |
43 | TraesCS5B01G470000 | chr5A | 82.683 | 872 | 130 | 13 | 4710 | 5565 | 354972306 | 354971440 | 0.000000e+00 | 754.0 |
44 | TraesCS5B01G470000 | chr3A | 82.115 | 889 | 118 | 19 | 4710 | 5584 | 51697172 | 51696311 | 0.000000e+00 | 723.0 |
45 | TraesCS5B01G470000 | chr3A | 80.297 | 807 | 132 | 19 | 4770 | 5560 | 453296812 | 453297607 | 9.620000e-163 | 584.0 |
46 | TraesCS5B01G470000 | chr3A | 78.099 | 484 | 94 | 12 | 2077 | 2554 | 540338 | 540815 | 5.050000e-76 | 296.0 |
47 | TraesCS5B01G470000 | chr2A | 84.828 | 725 | 92 | 10 | 4711 | 5422 | 513643937 | 513643218 | 0.000000e+00 | 713.0 |
48 | TraesCS5B01G470000 | chr2A | 79.038 | 520 | 93 | 11 | 2088 | 2602 | 754609654 | 754610162 | 6.390000e-90 | 342.0 |
49 | TraesCS5B01G470000 | chr2A | 81.944 | 216 | 35 | 4 | 811 | 1025 | 104922116 | 104921904 | 5.310000e-41 | 180.0 |
50 | TraesCS5B01G470000 | chr2A | 100.000 | 30 | 0 | 0 | 6630 | 6659 | 759048612 | 759048641 | 1.000000e-03 | 56.5 |
51 | TraesCS5B01G470000 | chr1A | 81.591 | 880 | 130 | 20 | 4722 | 5584 | 124529002 | 124529866 | 0.000000e+00 | 699.0 |
52 | TraesCS5B01G470000 | chr1A | 84.229 | 558 | 61 | 19 | 37 | 578 | 86066672 | 86066126 | 9.900000e-143 | 518.0 |
53 | TraesCS5B01G470000 | chr1A | 83.039 | 566 | 68 | 16 | 37 | 578 | 550688432 | 550687871 | 7.760000e-134 | 488.0 |
54 | TraesCS5B01G470000 | chr1A | 83.884 | 242 | 29 | 5 | 5596 | 5835 | 375796834 | 375796601 | 8.690000e-54 | 222.0 |
55 | TraesCS5B01G470000 | chr4B | 81.808 | 874 | 103 | 19 | 4709 | 5564 | 226516591 | 226515756 | 0.000000e+00 | 682.0 |
56 | TraesCS5B01G470000 | chr7B | 85.604 | 646 | 79 | 8 | 4868 | 5501 | 413577677 | 413577034 | 0.000000e+00 | 665.0 |
57 | TraesCS5B01G470000 | chr7B | 83.740 | 246 | 38 | 2 | 777 | 1022 | 685195529 | 685195772 | 1.440000e-56 | 231.0 |
58 | TraesCS5B01G470000 | chr7B | 100.000 | 28 | 0 | 0 | 6632 | 6659 | 84192905 | 84192932 | 1.200000e-02 | 52.8 |
59 | TraesCS5B01G470000 | chr7B | 100.000 | 28 | 0 | 0 | 6632 | 6659 | 327570973 | 327570946 | 1.200000e-02 | 52.8 |
60 | TraesCS5B01G470000 | chr3B | 86.873 | 518 | 53 | 11 | 1 | 514 | 772450204 | 772450710 | 3.490000e-157 | 566.0 |
61 | TraesCS5B01G470000 | chr3B | 77.358 | 795 | 141 | 27 | 4708 | 5498 | 808022131 | 808022890 | 1.030000e-117 | 435.0 |
62 | TraesCS5B01G470000 | chr3B | 82.051 | 78 | 12 | 1 | 858 | 935 | 769705121 | 769705046 | 1.550000e-06 | 65.8 |
63 | TraesCS5B01G470000 | chr3B | 100.000 | 29 | 0 | 0 | 6631 | 6659 | 394028079 | 394028107 | 3.000000e-03 | 54.7 |
64 | TraesCS5B01G470000 | chr4D | 85.271 | 258 | 27 | 6 | 5583 | 5839 | 370308057 | 370307810 | 8.570000e-64 | 255.0 |
65 | TraesCS5B01G470000 | chr4D | 84.400 | 250 | 28 | 7 | 5587 | 5835 | 22044543 | 22044782 | 1.120000e-57 | 235.0 |
66 | TraesCS5B01G470000 | chr4D | 100.000 | 28 | 0 | 0 | 6632 | 6659 | 32485037 | 32485010 | 1.200000e-02 | 52.8 |
67 | TraesCS5B01G470000 | chr6A | 75.523 | 478 | 104 | 12 | 2134 | 2603 | 616033477 | 616033005 | 8.690000e-54 | 222.0 |
68 | TraesCS5B01G470000 | chr6A | 82.101 | 257 | 36 | 7 | 5585 | 5839 | 122735703 | 122735455 | 1.880000e-50 | 211.0 |
69 | TraesCS5B01G470000 | chr6A | 78.295 | 129 | 26 | 2 | 2805 | 2932 | 616032836 | 616032709 | 1.540000e-11 | 82.4 |
70 | TraesCS5B01G470000 | chr6A | 100.000 | 31 | 0 | 0 | 6629 | 6659 | 599616689 | 599616719 | 2.590000e-04 | 58.4 |
71 | TraesCS5B01G470000 | chr6D | 85.263 | 190 | 17 | 7 | 5585 | 5773 | 385668936 | 385669115 | 1.140000e-42 | 185.0 |
72 | TraesCS5B01G470000 | chr6D | 87.742 | 155 | 15 | 4 | 5583 | 5736 | 302247088 | 302246937 | 1.910000e-40 | 178.0 |
73 | TraesCS5B01G470000 | chr6D | 100.000 | 29 | 0 | 0 | 6631 | 6659 | 49542839 | 49542867 | 3.000000e-03 | 54.7 |
74 | TraesCS5B01G470000 | chr6D | 100.000 | 28 | 0 | 0 | 6632 | 6659 | 102172465 | 102172492 | 1.200000e-02 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G470000 | chr5B | 643400430 | 643407088 | 6658 | True | 12297.0 | 12297 | 100.0000 | 1 | 6659 | 1 | chr5B.!!$R4 | 6658 |
1 | TraesCS5B01G470000 | chr5B | 602858964 | 602859761 | 797 | False | 989.0 | 989 | 89.5130 | 1 | 776 | 1 | chr5B.!!$F4 | 775 |
2 | TraesCS5B01G470000 | chr5B | 203603835 | 203604634 | 799 | False | 929.0 | 929 | 87.6560 | 5839 | 6638 | 1 | chr5B.!!$F2 | 799 |
3 | TraesCS5B01G470000 | chr5B | 596985647 | 596986435 | 788 | True | 911.0 | 911 | 87.8940 | 4 | 776 | 1 | chr5B.!!$R3 | 772 |
4 | TraesCS5B01G470000 | chr5B | 578690904 | 578691647 | 743 | False | 789.0 | 789 | 86.2570 | 38 | 777 | 1 | chr5B.!!$F3 | 739 |
5 | TraesCS5B01G470000 | chr5B | 302079289 | 302082512 | 3223 | True | 396.5 | 521 | 83.9035 | 4710 | 5563 | 2 | chr5B.!!$R5 | 853 |
6 | TraesCS5B01G470000 | chr5D | 512389248 | 512397318 | 8070 | True | 3585.0 | 6141 | 89.4500 | 777 | 5959 | 2 | chr5D.!!$R1 | 5182 |
7 | TraesCS5B01G470000 | chr7D | 274505642 | 274506439 | 797 | False | 1048.0 | 1048 | 90.3630 | 5841 | 6638 | 1 | chr7D.!!$F2 | 797 |
8 | TraesCS5B01G470000 | chr7D | 274487605 | 274488404 | 799 | False | 942.0 | 942 | 87.9500 | 5836 | 6638 | 1 | chr7D.!!$F1 | 802 |
9 | TraesCS5B01G470000 | chr7D | 352903650 | 352904447 | 797 | True | 942.0 | 942 | 88.0000 | 5840 | 6637 | 1 | chr7D.!!$R1 | 797 |
10 | TraesCS5B01G470000 | chr2D | 633704187 | 633704987 | 800 | False | 970.0 | 970 | 88.5430 | 5837 | 6638 | 1 | chr2D.!!$F2 | 801 |
11 | TraesCS5B01G470000 | chr2D | 558291622 | 558292168 | 546 | True | 538.0 | 538 | 84.8100 | 39 | 578 | 1 | chr2D.!!$R1 | 539 |
12 | TraesCS5B01G470000 | chr1B | 202577980 | 202578778 | 798 | False | 941.0 | 941 | 87.9200 | 5838 | 6638 | 1 | chr1B.!!$F1 | 800 |
13 | TraesCS5B01G470000 | chr1B | 632768092 | 632768891 | 799 | True | 822.0 | 822 | 85.8200 | 4 | 784 | 1 | chr1B.!!$R1 | 780 |
14 | TraesCS5B01G470000 | chr1B | 527875656 | 527876326 | 670 | False | 765.0 | 765 | 87.3910 | 1 | 679 | 1 | chr1B.!!$F2 | 678 |
15 | TraesCS5B01G470000 | chr3D | 185744206 | 185744999 | 793 | False | 939.0 | 939 | 88.0300 | 5840 | 6638 | 1 | chr3D.!!$F1 | 798 |
16 | TraesCS5B01G470000 | chr3D | 588312468 | 588313195 | 727 | True | 712.0 | 712 | 84.5540 | 39 | 777 | 1 | chr3D.!!$R1 | 738 |
17 | TraesCS5B01G470000 | chr3D | 3371008 | 3371784 | 776 | False | 227.0 | 339 | 78.5310 | 2078 | 2887 | 2 | chr3D.!!$F2 | 809 |
18 | TraesCS5B01G470000 | chr1D | 209445654 | 209446451 | 797 | True | 939.0 | 939 | 87.9050 | 5839 | 6638 | 1 | chr1D.!!$R2 | 799 |
19 | TraesCS5B01G470000 | chr1D | 114212194 | 114213053 | 859 | False | 756.0 | 756 | 82.7590 | 4710 | 5567 | 1 | chr1D.!!$F1 | 857 |
20 | TraesCS5B01G470000 | chr1D | 141897430 | 141897982 | 552 | True | 595.0 | 595 | 86.5110 | 5019 | 5560 | 1 | chr1D.!!$R1 | 541 |
21 | TraesCS5B01G470000 | chrUn | 264826904 | 264827701 | 797 | False | 937.0 | 937 | 87.8750 | 5841 | 6638 | 1 | chrUn.!!$F1 | 797 |
22 | TraesCS5B01G470000 | chrUn | 22614614 | 22615399 | 785 | True | 880.0 | 880 | 87.3270 | 4 | 776 | 1 | chrUn.!!$R1 | 772 |
23 | TraesCS5B01G470000 | chr6B | 475813104 | 475813890 | 786 | False | 937.0 | 937 | 88.5930 | 11 | 777 | 1 | chr6B.!!$F1 | 766 |
24 | TraesCS5B01G470000 | chr2B | 574005065 | 574005858 | 793 | False | 869.0 | 869 | 86.8910 | 1 | 776 | 1 | chr2B.!!$F1 | 775 |
25 | TraesCS5B01G470000 | chr2B | 717041355 | 717042118 | 763 | True | 627.0 | 627 | 82.0200 | 4 | 793 | 1 | chr2B.!!$R2 | 789 |
26 | TraesCS5B01G470000 | chr4A | 518856398 | 518857284 | 886 | True | 845.0 | 845 | 84.1930 | 4711 | 5584 | 1 | chr4A.!!$R1 | 873 |
27 | TraesCS5B01G470000 | chr4A | 416226879 | 416227774 | 895 | False | 822.0 | 822 | 83.5190 | 4703 | 5584 | 1 | chr4A.!!$F1 | 881 |
28 | TraesCS5B01G470000 | chr4A | 743251842 | 743252526 | 684 | False | 715.0 | 715 | 85.7960 | 37 | 720 | 1 | chr4A.!!$F2 | 683 |
29 | TraesCS5B01G470000 | chr4A | 743285415 | 743285940 | 525 | False | 464.0 | 464 | 82.8950 | 254 | 776 | 1 | chr4A.!!$F3 | 522 |
30 | TraesCS5B01G470000 | chr5A | 354971440 | 354972306 | 866 | True | 754.0 | 754 | 82.6830 | 4710 | 5565 | 1 | chr5A.!!$R1 | 855 |
31 | TraesCS5B01G470000 | chr3A | 51696311 | 51697172 | 861 | True | 723.0 | 723 | 82.1150 | 4710 | 5584 | 1 | chr3A.!!$R1 | 874 |
32 | TraesCS5B01G470000 | chr3A | 453296812 | 453297607 | 795 | False | 584.0 | 584 | 80.2970 | 4770 | 5560 | 1 | chr3A.!!$F2 | 790 |
33 | TraesCS5B01G470000 | chr2A | 513643218 | 513643937 | 719 | True | 713.0 | 713 | 84.8280 | 4711 | 5422 | 1 | chr2A.!!$R2 | 711 |
34 | TraesCS5B01G470000 | chr2A | 754609654 | 754610162 | 508 | False | 342.0 | 342 | 79.0380 | 2088 | 2602 | 1 | chr2A.!!$F1 | 514 |
35 | TraesCS5B01G470000 | chr1A | 124529002 | 124529866 | 864 | False | 699.0 | 699 | 81.5910 | 4722 | 5584 | 1 | chr1A.!!$F1 | 862 |
36 | TraesCS5B01G470000 | chr1A | 86066126 | 86066672 | 546 | True | 518.0 | 518 | 84.2290 | 37 | 578 | 1 | chr1A.!!$R1 | 541 |
37 | TraesCS5B01G470000 | chr1A | 550687871 | 550688432 | 561 | True | 488.0 | 488 | 83.0390 | 37 | 578 | 1 | chr1A.!!$R3 | 541 |
38 | TraesCS5B01G470000 | chr4B | 226515756 | 226516591 | 835 | True | 682.0 | 682 | 81.8080 | 4709 | 5564 | 1 | chr4B.!!$R1 | 855 |
39 | TraesCS5B01G470000 | chr7B | 413577034 | 413577677 | 643 | True | 665.0 | 665 | 85.6040 | 4868 | 5501 | 1 | chr7B.!!$R2 | 633 |
40 | TraesCS5B01G470000 | chr3B | 772450204 | 772450710 | 506 | False | 566.0 | 566 | 86.8730 | 1 | 514 | 1 | chr3B.!!$F2 | 513 |
41 | TraesCS5B01G470000 | chr3B | 808022131 | 808022890 | 759 | False | 435.0 | 435 | 77.3580 | 4708 | 5498 | 1 | chr3B.!!$F3 | 790 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
815 | 936 | 0.031917 | TTCCGGGTACATGGGCTCTA | 60.032 | 55.0 | 0.00 | 0.00 | 0.00 | 2.43 | F |
1097 | 1227 | 0.036388 | ATGTGGTGCTAGGGTTGTCG | 60.036 | 55.0 | 0.00 | 0.00 | 0.00 | 4.35 | F |
1392 | 1526 | 0.111704 | CAGAAAAGCACACGACGACG | 60.112 | 55.0 | 5.58 | 5.58 | 45.75 | 5.12 | F |
2678 | 5742 | 0.039527 | GGTGGATGTTTTGGACGCAC | 60.040 | 55.0 | 0.00 | 0.00 | 0.00 | 5.34 | F |
3237 | 6301 | 0.240945 | GGGCAACATGACCTGTTTCG | 59.759 | 55.0 | 0.00 | 0.00 | 45.98 | 3.46 | F |
4846 | 7919 | 0.399091 | CCCTCTAGTCTGCATGGGGA | 60.399 | 60.0 | 0.00 | 0.00 | 34.71 | 4.81 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1761 | 1900 | 0.103937 | TGGCGCAAAAGTCCCAAAAG | 59.896 | 50.0 | 10.83 | 0.0 | 0.00 | 2.27 | R |
2064 | 5119 | 0.474184 | CTCCAATCCCGCCATTACCT | 59.526 | 55.0 | 0.00 | 0.0 | 0.00 | 3.08 | R |
3201 | 6265 | 0.557238 | CCCCATGGATCCCAACATCA | 59.443 | 55.0 | 15.22 | 0.0 | 36.95 | 3.07 | R |
4411 | 7481 | 0.109597 | GCTCATTGAAACGGCCACAG | 60.110 | 55.0 | 2.24 | 0.0 | 0.00 | 3.66 | R |
5115 | 8203 | 0.034059 | CTCTCCGTTGCTCCAGTTGT | 59.966 | 55.0 | 0.00 | 0.0 | 0.00 | 3.32 | R |
5831 | 11305 | 0.165079 | GTTGCACCGACAACCATACG | 59.835 | 55.0 | 0.00 | 0.0 | 43.34 | 3.06 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
86 | 99 | 8.322906 | TGTTGAATAAGTAGTTTGACCAGATG | 57.677 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
133 | 196 | 8.416329 | ACTGAAATTTGAGCATAACTTGTTTCT | 58.584 | 29.630 | 4.41 | 0.00 | 0.00 | 2.52 |
196 | 259 | 2.626455 | GGTCGAATTCGGATGCGC | 59.374 | 61.111 | 26.47 | 0.00 | 40.29 | 6.09 |
421 | 517 | 1.555477 | AAAAGGCGATACCCGGTGGA | 61.555 | 55.000 | 0.00 | 0.00 | 40.58 | 4.02 |
474 | 577 | 0.107831 | TCCCGGTTTGTGTCTCCAAG | 59.892 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
495 | 599 | 2.181975 | CGGGACTAAAGGTTAGACCCA | 58.818 | 52.381 | 25.19 | 0.00 | 45.61 | 4.51 |
605 | 726 | 2.590114 | GCCCCGACCTAACACCAGT | 61.590 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
659 | 780 | 3.134081 | CACAAACCGGGACTATAGGTCAT | 59.866 | 47.826 | 6.32 | 0.00 | 46.16 | 3.06 |
679 | 800 | 5.820947 | GTCATAAATGAACCGGGACTAATGT | 59.179 | 40.000 | 6.32 | 0.00 | 38.75 | 2.71 |
706 | 827 | 0.108041 | TTCGAACCGGGACTAATGGC | 60.108 | 55.000 | 6.32 | 0.00 | 0.00 | 4.40 |
720 | 841 | 0.034574 | AATGGCCACATTAGTGCCGA | 60.035 | 50.000 | 8.16 | 0.00 | 45.17 | 5.54 |
730 | 851 | 5.505654 | CCACATTAGTGCCGATTCATTTACC | 60.506 | 44.000 | 0.00 | 0.00 | 44.53 | 2.85 |
777 | 898 | 7.277981 | ACATTAGGTCATTTTTCTACTAGTGCG | 59.722 | 37.037 | 5.39 | 0.00 | 0.00 | 5.34 |
778 | 899 | 5.148651 | AGGTCATTTTTCTACTAGTGCGT | 57.851 | 39.130 | 5.39 | 0.00 | 0.00 | 5.24 |
779 | 900 | 4.929808 | AGGTCATTTTTCTACTAGTGCGTG | 59.070 | 41.667 | 5.39 | 0.00 | 0.00 | 5.34 |
781 | 902 | 5.062308 | GGTCATTTTTCTACTAGTGCGTGAG | 59.938 | 44.000 | 5.39 | 0.00 | 0.00 | 3.51 |
782 | 903 | 5.634020 | GTCATTTTTCTACTAGTGCGTGAGT | 59.366 | 40.000 | 5.39 | 0.00 | 0.00 | 3.41 |
783 | 904 | 5.862323 | TCATTTTTCTACTAGTGCGTGAGTC | 59.138 | 40.000 | 5.39 | 0.00 | 0.00 | 3.36 |
784 | 905 | 3.466712 | TTTCTACTAGTGCGTGAGTCG | 57.533 | 47.619 | 5.39 | 0.00 | 43.12 | 4.18 |
798 | 919 | 4.087366 | GCGTGAGTCGATCGAGATTTATTC | 59.913 | 45.833 | 20.09 | 3.85 | 42.86 | 1.75 |
799 | 920 | 4.613448 | CGTGAGTCGATCGAGATTTATTCC | 59.387 | 45.833 | 20.09 | 3.06 | 42.86 | 3.01 |
802 | 923 | 3.057456 | AGTCGATCGAGATTTATTCCGGG | 60.057 | 47.826 | 20.09 | 0.00 | 0.00 | 5.73 |
809 | 930 | 3.994392 | CGAGATTTATTCCGGGTACATGG | 59.006 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
813 | 934 | 1.053424 | TATTCCGGGTACATGGGCTC | 58.947 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
814 | 935 | 0.694444 | ATTCCGGGTACATGGGCTCT | 60.694 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
815 | 936 | 0.031917 | TTCCGGGTACATGGGCTCTA | 60.032 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
819 | 940 | 2.028385 | CCGGGTACATGGGCTCTAATAC | 60.028 | 54.545 | 0.00 | 0.00 | 0.00 | 1.89 |
822 | 943 | 3.587506 | GGGTACATGGGCTCTAATACCAT | 59.412 | 47.826 | 11.37 | 0.00 | 45.48 | 3.55 |
825 | 946 | 6.240060 | GGGTACATGGGCTCTAATACCATTTA | 60.240 | 42.308 | 11.37 | 0.00 | 42.08 | 1.40 |
843 | 964 | 4.447138 | TTTATTATGCAATCCCGGGTCT | 57.553 | 40.909 | 22.86 | 6.42 | 0.00 | 3.85 |
846 | 967 | 2.337879 | TATGCAATCCCGGGTCTGCC | 62.338 | 60.000 | 32.71 | 21.19 | 33.78 | 4.85 |
852 | 973 | 3.953775 | CCCGGGTCTGCCAACACT | 61.954 | 66.667 | 14.18 | 0.00 | 36.17 | 3.55 |
853 | 974 | 2.589157 | CCCGGGTCTGCCAACACTA | 61.589 | 63.158 | 14.18 | 0.00 | 36.17 | 2.74 |
854 | 975 | 1.602237 | CCGGGTCTGCCAACACTAT | 59.398 | 57.895 | 0.00 | 0.00 | 36.17 | 2.12 |
855 | 976 | 0.462047 | CCGGGTCTGCCAACACTATC | 60.462 | 60.000 | 0.00 | 0.00 | 36.17 | 2.08 |
856 | 977 | 0.249120 | CGGGTCTGCCAACACTATCA | 59.751 | 55.000 | 0.00 | 0.00 | 36.17 | 2.15 |
860 | 982 | 3.763897 | GGGTCTGCCAACACTATCATTTT | 59.236 | 43.478 | 0.00 | 0.00 | 36.17 | 1.82 |
864 | 986 | 5.065218 | GTCTGCCAACACTATCATTTTCGAT | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 3.59 |
876 | 998 | 4.749976 | TCATTTTCGATCCACATACGTCA | 58.250 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
880 | 1002 | 3.861276 | TCGATCCACATACGTCAAACT | 57.139 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
885 | 1007 | 2.093869 | TCCACATACGTCAAACTAGGCC | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
890 | 1012 | 0.763035 | ACGTCAAACTAGGCCCAACT | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
901 | 1023 | 0.107459 | GGCCCAACTAGAGAGCAAGG | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
903 | 1025 | 0.107459 | CCCAACTAGAGAGCAAGGCC | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
921 | 1047 | 0.390860 | CCGACTTATGAGAGGCCCTG | 59.609 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
922 | 1048 | 0.390860 | CGACTTATGAGAGGCCCTGG | 59.609 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
923 | 1049 | 0.761802 | GACTTATGAGAGGCCCTGGG | 59.238 | 60.000 | 8.86 | 8.86 | 0.00 | 4.45 |
953 | 1082 | 4.164221 | TCCCCAAAAAGACTAGCCTGATAG | 59.836 | 45.833 | 0.00 | 0.00 | 0.00 | 2.08 |
954 | 1083 | 4.164221 | CCCCAAAAAGACTAGCCTGATAGA | 59.836 | 45.833 | 0.00 | 0.00 | 0.00 | 1.98 |
961 | 1090 | 4.219919 | AGACTAGCCTGATAGAAAGGGAC | 58.780 | 47.826 | 0.00 | 0.00 | 35.17 | 4.46 |
985 | 1114 | 2.542595 | CCGCACCCTTATAAATCGTGTC | 59.457 | 50.000 | 7.62 | 1.97 | 0.00 | 3.67 |
987 | 1116 | 2.876550 | GCACCCTTATAAATCGTGTCCC | 59.123 | 50.000 | 7.62 | 0.00 | 0.00 | 4.46 |
989 | 1118 | 2.140717 | CCCTTATAAATCGTGTCCCGC | 58.859 | 52.381 | 0.00 | 0.00 | 36.19 | 6.13 |
992 | 1121 | 3.463944 | CTTATAAATCGTGTCCCGCCTT | 58.536 | 45.455 | 0.00 | 0.00 | 36.19 | 4.35 |
1002 | 1131 | 1.923395 | TCCCGCCTTCTCCCACAAT | 60.923 | 57.895 | 0.00 | 0.00 | 0.00 | 2.71 |
1003 | 1132 | 1.452108 | CCCGCCTTCTCCCACAATC | 60.452 | 63.158 | 0.00 | 0.00 | 0.00 | 2.67 |
1022 | 1152 | 3.048337 | TCGATGTGGGACTAAACCAAC | 57.952 | 47.619 | 0.00 | 0.00 | 40.24 | 3.77 |
1027 | 1157 | 2.140717 | GTGGGACTAAACCAACACTCG | 58.859 | 52.381 | 0.00 | 0.00 | 40.24 | 4.18 |
1060 | 1190 | 1.508088 | GGCGCAATGAGGAAAGTGG | 59.492 | 57.895 | 10.83 | 0.00 | 0.00 | 4.00 |
1064 | 1194 | 0.244721 | GCAATGAGGAAAGTGGTGGC | 59.755 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1090 | 1220 | 1.067635 | GTTGGCAAATGTGGTGCTAGG | 60.068 | 52.381 | 0.00 | 0.00 | 41.88 | 3.02 |
1093 | 1223 | 1.256812 | GCAAATGTGGTGCTAGGGTT | 58.743 | 50.000 | 0.00 | 0.00 | 39.00 | 4.11 |
1097 | 1227 | 0.036388 | ATGTGGTGCTAGGGTTGTCG | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1104 | 1234 | 0.666913 | GCTAGGGTTGTCGATCGCTA | 59.333 | 55.000 | 11.09 | 4.02 | 0.00 | 4.26 |
1160 | 1293 | 2.192263 | CTGGAAGTAGCCCTCCTTCTT | 58.808 | 52.381 | 1.49 | 0.00 | 37.73 | 2.52 |
1178 | 1311 | 6.267699 | TCCTTCTTCTTCACTCAGTTGACATA | 59.732 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
1180 | 1313 | 5.473931 | TCTTCTTCACTCAGTTGACATAGC | 58.526 | 41.667 | 0.00 | 0.00 | 0.00 | 2.97 |
1181 | 1314 | 4.193826 | TCTTCACTCAGTTGACATAGCC | 57.806 | 45.455 | 0.00 | 0.00 | 0.00 | 3.93 |
1184 | 1317 | 0.537188 | ACTCAGTTGACATAGCCGGG | 59.463 | 55.000 | 2.18 | 0.00 | 0.00 | 5.73 |
1185 | 1318 | 0.811616 | CTCAGTTGACATAGCCGGGC | 60.812 | 60.000 | 12.11 | 12.11 | 0.00 | 6.13 |
1187 | 1320 | 2.125269 | GTTGACATAGCCGGGCGT | 60.125 | 61.111 | 14.39 | 5.45 | 0.00 | 5.68 |
1188 | 1321 | 1.743995 | GTTGACATAGCCGGGCGTT | 60.744 | 57.895 | 14.39 | 1.65 | 0.00 | 4.84 |
1189 | 1322 | 1.448893 | TTGACATAGCCGGGCGTTC | 60.449 | 57.895 | 14.39 | 9.11 | 0.00 | 3.95 |
1190 | 1323 | 2.960129 | GACATAGCCGGGCGTTCG | 60.960 | 66.667 | 14.39 | 6.30 | 0.00 | 3.95 |
1191 | 1324 | 3.420214 | GACATAGCCGGGCGTTCGA | 62.420 | 63.158 | 14.39 | 0.00 | 0.00 | 3.71 |
1192 | 1325 | 2.029073 | CATAGCCGGGCGTTCGAT | 59.971 | 61.111 | 14.39 | 0.00 | 0.00 | 3.59 |
1238 | 1371 | 0.968405 | GCTTGCATTGGGGACTTGAA | 59.032 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1239 | 1372 | 1.067354 | GCTTGCATTGGGGACTTGAAG | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
1248 | 1381 | 1.002011 | GGACTTGAAGGGTCCTGGC | 60.002 | 63.158 | 5.72 | 0.00 | 46.89 | 4.85 |
1249 | 1382 | 1.761174 | GACTTGAAGGGTCCTGGCA | 59.239 | 57.895 | 0.00 | 0.00 | 0.00 | 4.92 |
1256 | 1389 | 0.921256 | AAGGGTCCTGGCAGCCTATT | 60.921 | 55.000 | 14.15 | 3.02 | 43.85 | 1.73 |
1257 | 1390 | 0.921256 | AGGGTCCTGGCAGCCTATTT | 60.921 | 55.000 | 14.15 | 0.00 | 42.76 | 1.40 |
1260 | 1393 | 1.383523 | GTCCTGGCAGCCTATTTGAC | 58.616 | 55.000 | 14.15 | 5.52 | 0.00 | 3.18 |
1319 | 1452 | 2.034048 | CTAGCTCGGAGGAAAGGCCC | 62.034 | 65.000 | 7.20 | 0.00 | 37.37 | 5.80 |
1340 | 1473 | 3.483869 | GGCAGGAAGAGCGGGGAT | 61.484 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1360 | 1494 | 3.628646 | ATCTCTTGGTGGCGTGGGC | 62.629 | 63.158 | 0.00 | 0.00 | 38.90 | 5.36 |
1362 | 1496 | 4.641645 | TCTTGGTGGCGTGGGCAG | 62.642 | 66.667 | 0.00 | 0.00 | 42.47 | 4.85 |
1379 | 1513 | 1.003839 | AGATCGGCGGTGCAGAAAA | 60.004 | 52.632 | 7.21 | 0.00 | 36.25 | 2.29 |
1380 | 1514 | 1.021390 | AGATCGGCGGTGCAGAAAAG | 61.021 | 55.000 | 7.21 | 0.00 | 36.25 | 2.27 |
1381 | 1515 | 2.583685 | GATCGGCGGTGCAGAAAAGC | 62.584 | 60.000 | 7.21 | 0.00 | 36.25 | 3.51 |
1389 | 1523 | 1.641140 | TGCAGAAAAGCACACGACG | 59.359 | 52.632 | 0.00 | 0.00 | 40.11 | 5.12 |
1390 | 1524 | 0.808060 | TGCAGAAAAGCACACGACGA | 60.808 | 50.000 | 0.00 | 0.00 | 40.11 | 4.20 |
1391 | 1525 | 0.383124 | GCAGAAAAGCACACGACGAC | 60.383 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
1392 | 1526 | 0.111704 | CAGAAAAGCACACGACGACG | 60.112 | 55.000 | 5.58 | 5.58 | 45.75 | 5.12 |
1393 | 1527 | 1.200839 | GAAAAGCACACGACGACGG | 59.799 | 57.895 | 12.58 | 3.35 | 44.46 | 4.79 |
1394 | 1528 | 1.485032 | GAAAAGCACACGACGACGGT | 61.485 | 55.000 | 12.58 | 4.00 | 44.46 | 4.83 |
1395 | 1529 | 1.485032 | AAAAGCACACGACGACGGTC | 61.485 | 55.000 | 12.58 | 0.00 | 44.46 | 4.79 |
1411 | 1545 | 3.762779 | ACGGTCGTAAATAGTAGTGCAC | 58.237 | 45.455 | 9.40 | 9.40 | 0.00 | 4.57 |
1417 | 1551 | 4.460034 | TCGTAAATAGTAGTGCACTGTCCA | 59.540 | 41.667 | 29.57 | 11.59 | 38.24 | 4.02 |
1418 | 1552 | 4.798907 | CGTAAATAGTAGTGCACTGTCCAG | 59.201 | 45.833 | 29.57 | 7.69 | 38.24 | 3.86 |
1437 | 1571 | 1.355381 | AGTGGTGATCTCCAATGGCAA | 59.645 | 47.619 | 17.83 | 0.00 | 39.34 | 4.52 |
1438 | 1572 | 1.747355 | GTGGTGATCTCCAATGGCAAG | 59.253 | 52.381 | 17.83 | 0.00 | 39.34 | 4.01 |
1439 | 1573 | 1.341285 | TGGTGATCTCCAATGGCAAGG | 60.341 | 52.381 | 14.08 | 0.00 | 34.24 | 3.61 |
1442 | 1576 | 0.552848 | GATCTCCAATGGCAAGGGGA | 59.447 | 55.000 | 13.49 | 13.49 | 39.11 | 4.81 |
1460 | 1594 | 4.265056 | GGTGGAGTTGGGCGGTGT | 62.265 | 66.667 | 0.00 | 0.00 | 0.00 | 4.16 |
1476 | 1610 | 2.952310 | CGGTGTCAGACATGATCTAGGA | 59.048 | 50.000 | 6.51 | 0.00 | 37.87 | 2.94 |
1483 | 1617 | 4.410228 | TCAGACATGATCTAGGAAAAGGGG | 59.590 | 45.833 | 0.00 | 0.00 | 35.15 | 4.79 |
1508 | 1642 | 3.569849 | TGGCGGACCAAAGAAGGA | 58.430 | 55.556 | 0.00 | 0.00 | 45.37 | 3.36 |
1509 | 1643 | 1.072505 | TGGCGGACCAAAGAAGGAC | 59.927 | 57.895 | 0.00 | 0.00 | 45.37 | 3.85 |
1510 | 1644 | 2.033194 | GGCGGACCAAAGAAGGACG | 61.033 | 63.158 | 0.00 | 0.00 | 36.30 | 4.79 |
1511 | 1645 | 1.005394 | GCGGACCAAAGAAGGACGA | 60.005 | 57.895 | 0.00 | 0.00 | 35.64 | 4.20 |
1513 | 1647 | 0.669625 | CGGACCAAAGAAGGACGACC | 60.670 | 60.000 | 0.00 | 0.00 | 35.64 | 4.79 |
1514 | 1648 | 0.395312 | GGACCAAAGAAGGACGACCA | 59.605 | 55.000 | 6.71 | 0.00 | 38.94 | 4.02 |
1515 | 1649 | 1.003233 | GGACCAAAGAAGGACGACCAT | 59.997 | 52.381 | 6.71 | 0.00 | 38.94 | 3.55 |
1516 | 1650 | 2.347731 | GACCAAAGAAGGACGACCATC | 58.652 | 52.381 | 6.71 | 3.59 | 38.94 | 3.51 |
1518 | 1652 | 2.289694 | ACCAAAGAAGGACGACCATCTG | 60.290 | 50.000 | 12.23 | 3.36 | 42.44 | 2.90 |
1519 | 1653 | 2.350522 | CAAAGAAGGACGACCATCTGG | 58.649 | 52.381 | 12.23 | 4.84 | 42.44 | 3.86 |
1520 | 1654 | 0.250513 | AAGAAGGACGACCATCTGGC | 59.749 | 55.000 | 12.23 | 0.00 | 42.44 | 4.85 |
1529 | 1665 | 1.743996 | GACCATCTGGCCAAAGAGAC | 58.256 | 55.000 | 7.01 | 0.00 | 39.32 | 3.36 |
1545 | 1681 | 3.806380 | AGAGACATATTTGGCTGCTCTG | 58.194 | 45.455 | 0.00 | 0.00 | 43.05 | 3.35 |
1550 | 1686 | 1.289160 | TATTTGGCTGCTCTGGAGGT | 58.711 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1558 | 1694 | 1.876156 | CTGCTCTGGAGGTCAAAACAC | 59.124 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
1608 | 1744 | 0.537188 | TACTGCTAGCTCCTTGCCAC | 59.463 | 55.000 | 17.23 | 0.00 | 44.23 | 5.01 |
1620 | 1756 | 2.026262 | TCCTTGCCACATTTCTACTCCC | 60.026 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1666 | 1805 | 1.601166 | AAAACCGTGTTAGGTGCCTC | 58.399 | 50.000 | 0.00 | 0.00 | 45.21 | 4.70 |
1709 | 1848 | 7.907389 | AGTGGAGTCAAAGACATTAGATAACA | 58.093 | 34.615 | 0.00 | 0.00 | 34.60 | 2.41 |
1729 | 1868 | 9.167311 | GATAACATTTCCATATGTATGTCCCTC | 57.833 | 37.037 | 12.82 | 8.41 | 37.76 | 4.30 |
1750 | 1889 | 9.907819 | TCCCTCTATAAGAATATAAAGGGTGAA | 57.092 | 33.333 | 12.03 | 0.00 | 45.62 | 3.18 |
1761 | 1900 | 2.278332 | AAGGGTGAACTTTGAGGCTC | 57.722 | 50.000 | 7.79 | 7.79 | 0.00 | 4.70 |
1764 | 1903 | 2.175715 | AGGGTGAACTTTGAGGCTCTTT | 59.824 | 45.455 | 16.72 | 3.61 | 0.00 | 2.52 |
1766 | 1905 | 3.243535 | GGGTGAACTTTGAGGCTCTTTTG | 60.244 | 47.826 | 16.72 | 6.01 | 0.00 | 2.44 |
1767 | 1906 | 3.243535 | GGTGAACTTTGAGGCTCTTTTGG | 60.244 | 47.826 | 16.72 | 4.29 | 0.00 | 3.28 |
1775 | 1914 | 2.958355 | TGAGGCTCTTTTGGGACTTTTG | 59.042 | 45.455 | 16.72 | 0.00 | 39.37 | 2.44 |
1779 | 1918 | 0.387565 | TCTTTTGGGACTTTTGCGCC | 59.612 | 50.000 | 4.18 | 0.00 | 0.00 | 6.53 |
1785 | 1924 | 1.659794 | GGACTTTTGCGCCACATGT | 59.340 | 52.632 | 4.18 | 0.00 | 0.00 | 3.21 |
1796 | 1935 | 2.358898 | GCGCCACATGTATTGAAGGAAT | 59.641 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
1798 | 1937 | 4.677779 | GCGCCACATGTATTGAAGGAATTT | 60.678 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
1799 | 1938 | 5.410067 | CGCCACATGTATTGAAGGAATTTT | 58.590 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
1811 | 1950 | 8.607441 | ATTGAAGGAATTTTAAAAAGTGCCTC | 57.393 | 30.769 | 4.44 | 2.14 | 0.00 | 4.70 |
1812 | 1951 | 7.118496 | TGAAGGAATTTTAAAAAGTGCCTCA | 57.882 | 32.000 | 4.44 | 4.56 | 0.00 | 3.86 |
1813 | 1952 | 7.560368 | TGAAGGAATTTTAAAAAGTGCCTCAA | 58.440 | 30.769 | 4.44 | 0.00 | 0.00 | 3.02 |
1815 | 1954 | 7.786178 | AGGAATTTTAAAAAGTGCCTCAAAC | 57.214 | 32.000 | 4.44 | 0.00 | 0.00 | 2.93 |
1816 | 1955 | 7.334858 | AGGAATTTTAAAAAGTGCCTCAAACA | 58.665 | 30.769 | 4.44 | 0.00 | 0.00 | 2.83 |
1817 | 1956 | 7.279981 | AGGAATTTTAAAAAGTGCCTCAAACAC | 59.720 | 33.333 | 4.44 | 0.00 | 38.35 | 3.32 |
1818 | 1957 | 7.065204 | GGAATTTTAAAAAGTGCCTCAAACACA | 59.935 | 33.333 | 4.44 | 0.00 | 40.59 | 3.72 |
1820 | 1959 | 6.900568 | TTTAAAAAGTGCCTCAAACACATG | 57.099 | 33.333 | 0.00 | 0.00 | 40.59 | 3.21 |
1821 | 1960 | 2.514205 | AAAGTGCCTCAAACACATGC | 57.486 | 45.000 | 0.00 | 0.00 | 40.59 | 4.06 |
1838 | 1998 | 6.815089 | ACACATGCCTTTCAAGTTATTTTCA | 58.185 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1841 | 2001 | 7.327761 | CACATGCCTTTCAAGTTATTTTCAGAG | 59.672 | 37.037 | 0.00 | 0.00 | 0.00 | 3.35 |
1866 | 2026 | 6.542574 | TGCCTGAAATGCACTTTTAAAATG | 57.457 | 33.333 | 0.09 | 3.95 | 30.64 | 2.32 |
1868 | 2028 | 5.469760 | GCCTGAAATGCACTTTTAAAATGGT | 59.530 | 36.000 | 0.09 | 0.00 | 0.00 | 3.55 |
1899 | 4942 | 8.579850 | AATATTTGATTGAGTTAGTTGAGGCA | 57.420 | 30.769 | 0.00 | 0.00 | 0.00 | 4.75 |
1902 | 4945 | 3.327757 | TGATTGAGTTAGTTGAGGCACCT | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1931 | 4986 | 9.710979 | TTTAATTGAGTTAGTTGTCGAAAAGTG | 57.289 | 29.630 | 5.90 | 0.00 | 0.00 | 3.16 |
1940 | 4995 | 3.410631 | TGTCGAAAAGTGCCTGGATTA | 57.589 | 42.857 | 0.00 | 0.00 | 0.00 | 1.75 |
1959 | 5014 | 7.004086 | TGGATTAGGAATTATTTCGAGGCAAT | 58.996 | 34.615 | 0.00 | 0.00 | 32.28 | 3.56 |
2009 | 5064 | 7.958053 | AAACGTACTTATAGCCCATGTAATC | 57.042 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2010 | 5065 | 6.034161 | ACGTACTTATAGCCCATGTAATCC | 57.966 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2011 | 5066 | 5.541101 | ACGTACTTATAGCCCATGTAATCCA | 59.459 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2012 | 5067 | 6.042322 | ACGTACTTATAGCCCATGTAATCCAA | 59.958 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
2013 | 5068 | 6.932400 | CGTACTTATAGCCCATGTAATCCAAA | 59.068 | 38.462 | 0.00 | 0.00 | 0.00 | 3.28 |
2014 | 5069 | 7.117812 | CGTACTTATAGCCCATGTAATCCAAAG | 59.882 | 40.741 | 0.00 | 0.00 | 0.00 | 2.77 |
2015 | 5070 | 6.911308 | ACTTATAGCCCATGTAATCCAAAGT | 58.089 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2016 | 5071 | 7.354312 | ACTTATAGCCCATGTAATCCAAAGTT | 58.646 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
2017 | 5072 | 7.502561 | ACTTATAGCCCATGTAATCCAAAGTTC | 59.497 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2040 | 5095 | 5.773176 | TCCAAACAAGGGATTTAAGTCCTTC | 59.227 | 40.000 | 15.86 | 1.54 | 38.70 | 3.46 |
2064 | 5119 | 4.860802 | TTTATCCATTTGGGCAGAGAGA | 57.139 | 40.909 | 0.00 | 0.00 | 36.21 | 3.10 |
2065 | 5120 | 4.428294 | TTATCCATTTGGGCAGAGAGAG | 57.572 | 45.455 | 0.00 | 0.00 | 36.21 | 3.20 |
2196 | 5251 | 1.921887 | TCGGCGATACTTTAACTTGCG | 59.078 | 47.619 | 4.99 | 0.00 | 0.00 | 4.85 |
2197 | 5252 | 1.921887 | CGGCGATACTTTAACTTGCGA | 59.078 | 47.619 | 0.00 | 0.00 | 0.00 | 5.10 |
2678 | 5742 | 0.039527 | GGTGGATGTTTTGGACGCAC | 60.040 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2794 | 5858 | 0.745845 | ATGGTGCTCAGCGCTTAAGG | 60.746 | 55.000 | 7.50 | 0.00 | 39.23 | 2.69 |
3015 | 6079 | 2.031870 | AGCAGATGTGGTCGCTACATA | 58.968 | 47.619 | 8.37 | 0.00 | 38.78 | 2.29 |
3031 | 6095 | 1.027357 | CATATGTTCTGCTGGGTGGC | 58.973 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3111 | 6175 | 3.019564 | CTCCCCTGGTGAAAGCTAAATG | 58.980 | 50.000 | 0.00 | 0.00 | 33.76 | 2.32 |
3115 | 6179 | 2.450476 | CTGGTGAAAGCTAAATGGGCT | 58.550 | 47.619 | 0.00 | 0.00 | 42.31 | 5.19 |
3132 | 6196 | 1.004918 | CTCGTCTTGCCCGTTTCCT | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 3.36 |
3140 | 6204 | 1.770294 | TGCCCGTTTCCTTCACTTTT | 58.230 | 45.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3165 | 6229 | 3.081804 | GAGGGATTGTCACGTGGAAATT | 58.918 | 45.455 | 17.00 | 1.50 | 0.00 | 1.82 |
3177 | 6241 | 6.523201 | GTCACGTGGAAATTTGCAGTATTAAG | 59.477 | 38.462 | 17.00 | 2.06 | 0.00 | 1.85 |
3184 | 6248 | 7.065324 | TGGAAATTTGCAGTATTAAGACTACCG | 59.935 | 37.037 | 8.47 | 0.00 | 0.00 | 4.02 |
3193 | 6257 | 1.350071 | TAAGACTACCGGGCCACAAA | 58.650 | 50.000 | 6.32 | 0.00 | 0.00 | 2.83 |
3201 | 6265 | 1.663173 | CGGGCCACAAACGGATTTT | 59.337 | 52.632 | 4.39 | 0.00 | 0.00 | 1.82 |
3237 | 6301 | 0.240945 | GGGCAACATGACCTGTTTCG | 59.759 | 55.000 | 0.00 | 0.00 | 45.98 | 3.46 |
3322 | 6386 | 1.455959 | CTGGGACTCCGGGGTCTAG | 60.456 | 68.421 | 32.76 | 25.50 | 35.76 | 2.43 |
3342 | 6406 | 2.503061 | CTGGTCCATCCGCCTCAG | 59.497 | 66.667 | 0.00 | 0.00 | 39.52 | 3.35 |
3395 | 6459 | 1.202722 | TCTCCCGGTCAGAAAACAACC | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
3409 | 6473 | 5.591067 | AGAAAACAACCAGGAATTTGACGTA | 59.409 | 36.000 | 0.00 | 0.00 | 0.00 | 3.57 |
3444 | 6508 | 0.535102 | CGGGCTGCCCTTATTCGATT | 60.535 | 55.000 | 33.39 | 0.00 | 42.67 | 3.34 |
3464 | 6528 | 1.213678 | TCAATCAGGGGAGCAATGAGG | 59.786 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
3472 | 6536 | 1.377536 | GGAGCAATGAGGAGCTGTTC | 58.622 | 55.000 | 0.00 | 0.00 | 42.04 | 3.18 |
3473 | 6537 | 1.339438 | GGAGCAATGAGGAGCTGTTCA | 60.339 | 52.381 | 0.00 | 0.00 | 42.04 | 3.18 |
3474 | 6538 | 2.641305 | GAGCAATGAGGAGCTGTTCAT | 58.359 | 47.619 | 0.00 | 0.00 | 42.04 | 2.57 |
3475 | 6539 | 2.613133 | GAGCAATGAGGAGCTGTTCATC | 59.387 | 50.000 | 9.35 | 0.00 | 42.04 | 2.92 |
3476 | 6540 | 2.239150 | AGCAATGAGGAGCTGTTCATCT | 59.761 | 45.455 | 7.63 | 2.51 | 40.13 | 2.90 |
3480 | 6544 | 1.829849 | TGAGGAGCTGTTCATCTGGAG | 59.170 | 52.381 | 7.63 | 0.00 | 37.50 | 3.86 |
3591 | 6658 | 0.540923 | AGGCGTCGTAGAGTAGACCT | 59.459 | 55.000 | 0.00 | 0.00 | 36.95 | 3.85 |
3724 | 6791 | 1.333931 | CAGCTGTGCCATGATGTCATC | 59.666 | 52.381 | 5.25 | 5.83 | 33.61 | 2.92 |
3762 | 6829 | 2.040144 | GCTAGGGTCCATAGAAGGCCA | 61.040 | 57.143 | 14.82 | 0.00 | 0.00 | 5.36 |
3821 | 6888 | 7.969004 | TCTGGGTGTATCCGATATGAATAAAA | 58.031 | 34.615 | 0.00 | 0.00 | 37.00 | 1.52 |
3849 | 6916 | 4.845580 | AGGATGCGAGCTTGCCCG | 62.846 | 66.667 | 23.34 | 5.77 | 0.00 | 6.13 |
3879 | 6946 | 2.766263 | TCACCATGAGGACACCTGATAC | 59.234 | 50.000 | 0.00 | 0.00 | 38.69 | 2.24 |
3900 | 6967 | 4.112634 | ACGACAACACTTCATATGATCCG | 58.887 | 43.478 | 6.17 | 1.18 | 0.00 | 4.18 |
3938 | 7005 | 1.738830 | TTGTGCTACGCGGCTTACC | 60.739 | 57.895 | 12.47 | 0.00 | 0.00 | 2.85 |
4012 | 7079 | 1.019673 | CCATCGTTGCCCTCTTCATG | 58.980 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4029 | 7096 | 5.952347 | TCTTCATGCTCTACTACTCAAAGGA | 59.048 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4175 | 7245 | 4.389992 | ACATTCTTACTGATGTTGTGCTCG | 59.610 | 41.667 | 0.00 | 0.00 | 0.00 | 5.03 |
4180 | 7250 | 0.441533 | CTGATGTTGTGCTCGTCTGC | 59.558 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4206 | 7276 | 1.130777 | ACAGGTTTGCCTTGCCAAAT | 58.869 | 45.000 | 0.00 | 0.00 | 44.18 | 2.32 |
4216 | 7286 | 1.468908 | CCTTGCCAAATTTCGCGCATA | 60.469 | 47.619 | 8.75 | 0.00 | 0.00 | 3.14 |
4233 | 7303 | 5.802451 | CGCGCATATTATGTCTCTGTTAGAT | 59.198 | 40.000 | 8.75 | 0.00 | 36.36 | 1.98 |
4317 | 7387 | 3.069016 | TCAGTCGTTTGCTTCTTCTGGTA | 59.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.25 |
4383 | 7453 | 3.496160 | GGCTATTCCATGTTGTATCGGGT | 60.496 | 47.826 | 0.00 | 0.00 | 34.01 | 5.28 |
4391 | 7461 | 5.124776 | TCCATGTTGTATCGGGTTTCATTTC | 59.875 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
4394 | 7464 | 4.216687 | TGTTGTATCGGGTTTCATTTCCAC | 59.783 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
4397 | 7467 | 1.904287 | TCGGGTTTCATTTCCACTGG | 58.096 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4406 | 7476 | 3.765381 | TCATTTCCACTGGATTCTTGCA | 58.235 | 40.909 | 0.00 | 0.00 | 0.00 | 4.08 |
4411 | 7481 | 4.789012 | TCCACTGGATTCTTGCATTTTC | 57.211 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
4412 | 7482 | 4.410099 | TCCACTGGATTCTTGCATTTTCT | 58.590 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
4413 | 7483 | 4.219070 | TCCACTGGATTCTTGCATTTTCTG | 59.781 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
4414 | 7484 | 4.021719 | CCACTGGATTCTTGCATTTTCTGT | 60.022 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
4474 | 7544 | 7.838884 | ACTGTACTCTGTTTTCTATAAGACCC | 58.161 | 38.462 | 0.00 | 0.00 | 0.00 | 4.46 |
4703 | 7773 | 0.831307 | GCAACTCTAACCGATCCCCT | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4704 | 7774 | 1.209747 | GCAACTCTAACCGATCCCCTT | 59.790 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
4705 | 7775 | 2.433239 | GCAACTCTAACCGATCCCCTTA | 59.567 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4706 | 7776 | 3.118519 | GCAACTCTAACCGATCCCCTTAA | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 1.85 |
4750 | 7820 | 2.642139 | CAACCTTTGCCTGCATAGTG | 57.358 | 50.000 | 8.44 | 3.64 | 0.00 | 2.74 |
4755 | 7825 | 2.679837 | CCTTTGCCTGCATAGTGTACAG | 59.320 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4846 | 7919 | 0.399091 | CCCTCTAGTCTGCATGGGGA | 60.399 | 60.000 | 0.00 | 0.00 | 34.71 | 4.81 |
4866 | 7940 | 1.796459 | AGTAACGAAACGTGGCATGTC | 59.204 | 47.619 | 13.63 | 0.30 | 39.99 | 3.06 |
4912 | 7991 | 0.600782 | CACAAGGCATGGTGTTTGGC | 60.601 | 55.000 | 0.00 | 0.00 | 39.77 | 4.52 |
4941 | 8021 | 1.000938 | ACGTCTGTTGTCTCGTAACCC | 60.001 | 52.381 | 0.00 | 0.00 | 34.78 | 4.11 |
4954 | 8034 | 1.914764 | TAACCCCTTCGGCGAGGTT | 60.915 | 57.895 | 27.76 | 27.76 | 44.61 | 3.50 |
5083 | 8167 | 5.851177 | CCACACTTAAACATAGCAGTTTTCG | 59.149 | 40.000 | 7.16 | 3.06 | 41.58 | 3.46 |
5302 | 10767 | 2.825836 | GCGCCCAACCCTGATCAG | 60.826 | 66.667 | 16.24 | 16.24 | 0.00 | 2.90 |
5505 | 10972 | 4.124351 | TGCTCGTAGTTCCGGCGG | 62.124 | 66.667 | 22.51 | 22.51 | 0.00 | 6.13 |
5508 | 10975 | 1.515736 | CTCGTAGTTCCGGCGGTTC | 60.516 | 63.158 | 27.32 | 19.16 | 0.00 | 3.62 |
5510 | 10977 | 2.976356 | GTAGTTCCGGCGGTTCCT | 59.024 | 61.111 | 27.32 | 20.69 | 0.00 | 3.36 |
5538 | 11008 | 2.187946 | CCTCCACCATGACCTCGC | 59.812 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
5567 | 11040 | 3.400054 | GGCACCTCCTAGGCCGTT | 61.400 | 66.667 | 2.96 | 0.00 | 39.63 | 4.44 |
5584 | 11057 | 2.297895 | TTAGCGGCACCACCTCCAT | 61.298 | 57.895 | 1.45 | 0.00 | 35.61 | 3.41 |
5585 | 11058 | 2.535485 | TTAGCGGCACCACCTCCATG | 62.535 | 60.000 | 1.45 | 0.00 | 35.61 | 3.66 |
5586 | 11059 | 4.722700 | GCGGCACCACCTCCATGT | 62.723 | 66.667 | 0.00 | 0.00 | 35.61 | 3.21 |
5587 | 11060 | 2.034066 | CGGCACCACCTCCATGTT | 59.966 | 61.111 | 0.00 | 0.00 | 35.61 | 2.71 |
5588 | 11061 | 1.298340 | CGGCACCACCTCCATGTTA | 59.702 | 57.895 | 0.00 | 0.00 | 35.61 | 2.41 |
5589 | 11062 | 0.744414 | CGGCACCACCTCCATGTTAG | 60.744 | 60.000 | 0.00 | 0.00 | 35.61 | 2.34 |
5590 | 11063 | 0.394352 | GGCACCACCTCCATGTTAGG | 60.394 | 60.000 | 9.30 | 9.30 | 40.20 | 2.69 |
5591 | 11064 | 0.618458 | GCACCACCTCCATGTTAGGA | 59.382 | 55.000 | 16.22 | 0.00 | 37.57 | 2.94 |
5592 | 11065 | 1.004277 | GCACCACCTCCATGTTAGGAA | 59.996 | 52.381 | 16.22 | 0.00 | 37.20 | 3.36 |
5593 | 11066 | 2.357154 | GCACCACCTCCATGTTAGGAAT | 60.357 | 50.000 | 16.22 | 1.15 | 37.20 | 3.01 |
5594 | 11067 | 3.545703 | CACCACCTCCATGTTAGGAATC | 58.454 | 50.000 | 16.22 | 0.00 | 37.20 | 2.52 |
5595 | 11068 | 2.170607 | ACCACCTCCATGTTAGGAATCG | 59.829 | 50.000 | 16.22 | 4.93 | 37.20 | 3.34 |
5596 | 11069 | 2.170607 | CCACCTCCATGTTAGGAATCGT | 59.829 | 50.000 | 16.22 | 0.00 | 37.20 | 3.73 |
5610 | 11083 | 8.981647 | TGTTAGGAATCGTAGTAGAAAACAAAC | 58.018 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
5615 | 11088 | 9.505995 | GGAATCGTAGTAGAAAACAAACAAAAA | 57.494 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
5641 | 11114 | 3.408634 | CTTACGAACACCCAGGAACAAT | 58.591 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
5668 | 11141 | 3.718434 | AGGTGCATTAGAGGATTGGATCA | 59.282 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
5671 | 11144 | 4.458295 | GTGCATTAGAGGATTGGATCATGG | 59.542 | 45.833 | 0.00 | 0.00 | 0.00 | 3.66 |
5674 | 11147 | 5.746952 | GCATTAGAGGATTGGATCATGGTCA | 60.747 | 44.000 | 8.54 | 0.00 | 0.00 | 4.02 |
5703 | 11177 | 1.272490 | TCCGAGTTGTAGTGGAAGCAG | 59.728 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
5706 | 11180 | 2.329379 | GAGTTGTAGTGGAAGCAGACG | 58.671 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
5725 | 11199 | 5.525745 | CAGACGAGTCAGTGTAGATCATACT | 59.474 | 44.000 | 5.99 | 0.00 | 0.00 | 2.12 |
5727 | 11201 | 6.600032 | AGACGAGTCAGTGTAGATCATACTTT | 59.400 | 38.462 | 5.99 | 0.00 | 0.00 | 2.66 |
5737 | 11211 | 7.013464 | AGTGTAGATCATACTTTAAGTCCCTCG | 59.987 | 40.741 | 0.00 | 0.00 | 0.00 | 4.63 |
5738 | 11212 | 7.013083 | GTGTAGATCATACTTTAAGTCCCTCGA | 59.987 | 40.741 | 0.00 | 0.00 | 0.00 | 4.04 |
5739 | 11213 | 7.558807 | TGTAGATCATACTTTAAGTCCCTCGAA | 59.441 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
5740 | 11214 | 6.807789 | AGATCATACTTTAAGTCCCTCGAAC | 58.192 | 40.000 | 0.00 | 0.00 | 0.00 | 3.95 |
5741 | 11215 | 4.990257 | TCATACTTTAAGTCCCTCGAACG | 58.010 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
5742 | 11216 | 2.738013 | ACTTTAAGTCCCTCGAACGG | 57.262 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
5743 | 11217 | 1.966354 | ACTTTAAGTCCCTCGAACGGT | 59.034 | 47.619 | 0.00 | 0.00 | 0.00 | 4.83 |
5744 | 11218 | 2.029560 | ACTTTAAGTCCCTCGAACGGTC | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5765 | 11239 | 2.740452 | GAACCTACGATGAACGATCCC | 58.260 | 52.381 | 0.00 | 0.00 | 45.77 | 3.85 |
5785 | 11259 | 0.511653 | GCGAACCTTCCTCAAACGAC | 59.488 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
5787 | 11261 | 1.520494 | GAACCTTCCTCAAACGACCC | 58.480 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
5788 | 11262 | 0.109913 | AACCTTCCTCAAACGACCCC | 59.890 | 55.000 | 0.00 | 0.00 | 0.00 | 4.95 |
5789 | 11263 | 0.767060 | ACCTTCCTCAAACGACCCCT | 60.767 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5790 | 11264 | 0.036294 | CCTTCCTCAAACGACCCCTC | 60.036 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5796 | 11270 | 1.542915 | CTCAAACGACCCCTCGAACTA | 59.457 | 52.381 | 0.00 | 0.00 | 43.06 | 2.24 |
5804 | 11278 | 1.180029 | CCCCTCGAACTAAAGACCGA | 58.820 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5831 | 11305 | 1.403323 | GCCTCTCTACAATTGGCAAGC | 59.597 | 52.381 | 10.83 | 0.00 | 42.79 | 4.01 |
5936 | 11410 | 4.012374 | CAAGGCCAAGCAGAAGAAATAGA | 58.988 | 43.478 | 5.01 | 0.00 | 0.00 | 1.98 |
5991 | 11465 | 3.865164 | CCAAGACAAGCCAAAGAAACAAC | 59.135 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
6068 | 11543 | 1.752198 | CACCCCGAAGACAAGTCCA | 59.248 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
6147 | 11623 | 1.597854 | CGCTCCACCTCACAGCAAA | 60.598 | 57.895 | 0.00 | 0.00 | 32.27 | 3.68 |
6200 | 11676 | 2.416547 | CCAAGTGATTAAGTGGCTGTCG | 59.583 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
6249 | 11726 | 4.324254 | GGAAGATCACCCCTAAATGACACA | 60.324 | 45.833 | 0.00 | 0.00 | 0.00 | 3.72 |
6340 | 11817 | 1.577468 | CCACAACGTGACACTAAGCA | 58.423 | 50.000 | 3.68 | 0.00 | 35.23 | 3.91 |
6373 | 11850 | 0.250467 | GCCTTGTCCTGTCTGCAGAA | 60.250 | 55.000 | 20.19 | 8.16 | 45.28 | 3.02 |
6389 | 11866 | 6.931281 | GTCTGCAGAATTAGGTATGATAGCAA | 59.069 | 38.462 | 20.19 | 0.00 | 0.00 | 3.91 |
6495 | 11972 | 7.979786 | TTAGAAAGGATTCAGACCTCTGTAT | 57.020 | 36.000 | 2.25 | 0.00 | 44.12 | 2.29 |
6507 | 11984 | 3.474600 | ACCTCTGTATACTCATACGCGT | 58.525 | 45.455 | 19.17 | 19.17 | 40.04 | 6.01 |
6517 | 11994 | 0.172578 | TCATACGCGTGTAGCTGCTT | 59.827 | 50.000 | 24.59 | 0.00 | 45.59 | 3.91 |
6529 | 12006 | 1.043022 | AGCTGCTTTTGTTCCAAGGG | 58.957 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
6532 | 12009 | 1.615392 | CTGCTTTTGTTCCAAGGGGAG | 59.385 | 52.381 | 0.00 | 0.00 | 46.01 | 4.30 |
6545 | 12023 | 2.752807 | GGGGAGCTTGCCGGGATTA | 61.753 | 63.158 | 2.18 | 0.00 | 0.00 | 1.75 |
6605 | 12083 | 4.010349 | CCAAAGCAGGAGTAGGGTTTTAG | 58.990 | 47.826 | 0.00 | 0.00 | 32.89 | 1.85 |
6610 | 12088 | 2.576648 | CAGGAGTAGGGTTTTAGGCCTT | 59.423 | 50.000 | 12.58 | 0.00 | 0.00 | 4.35 |
6638 | 12116 | 3.421919 | CCCGAACCTGGGTAAAAACTA | 57.578 | 47.619 | 0.00 | 0.00 | 44.76 | 2.24 |
6639 | 12117 | 3.753815 | CCCGAACCTGGGTAAAAACTAA | 58.246 | 45.455 | 0.00 | 0.00 | 44.76 | 2.24 |
6640 | 12118 | 4.143543 | CCCGAACCTGGGTAAAAACTAAA | 58.856 | 43.478 | 0.00 | 0.00 | 44.76 | 1.85 |
6641 | 12119 | 4.216902 | CCCGAACCTGGGTAAAAACTAAAG | 59.783 | 45.833 | 0.00 | 0.00 | 44.76 | 1.85 |
6642 | 12120 | 4.216902 | CCGAACCTGGGTAAAAACTAAAGG | 59.783 | 45.833 | 0.00 | 0.00 | 0.00 | 3.11 |
6643 | 12121 | 5.065235 | CGAACCTGGGTAAAAACTAAAGGA | 58.935 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
6644 | 12122 | 5.532032 | CGAACCTGGGTAAAAACTAAAGGAA | 59.468 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
6645 | 12123 | 6.039605 | CGAACCTGGGTAAAAACTAAAGGAAA | 59.960 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
6646 | 12124 | 7.255695 | CGAACCTGGGTAAAAACTAAAGGAAAT | 60.256 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
6647 | 12125 | 9.081204 | GAACCTGGGTAAAAACTAAAGGAAATA | 57.919 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
6648 | 12126 | 9.610104 | AACCTGGGTAAAAACTAAAGGAAATAT | 57.390 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
6649 | 12127 | 9.031537 | ACCTGGGTAAAAACTAAAGGAAATATG | 57.968 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
6650 | 12128 | 7.979537 | CCTGGGTAAAAACTAAAGGAAATATGC | 59.020 | 37.037 | 0.00 | 0.00 | 0.00 | 3.14 |
6651 | 12129 | 7.842982 | TGGGTAAAAACTAAAGGAAATATGCC | 58.157 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
6652 | 12130 | 7.093245 | TGGGTAAAAACTAAAGGAAATATGCCC | 60.093 | 37.037 | 0.00 | 0.00 | 0.00 | 5.36 |
6653 | 12131 | 7.125204 | GGGTAAAAACTAAAGGAAATATGCCCT | 59.875 | 37.037 | 0.00 | 0.00 | 0.00 | 5.19 |
6654 | 12132 | 9.192642 | GGTAAAAACTAAAGGAAATATGCCCTA | 57.807 | 33.333 | 0.00 | 0.00 | 31.36 | 3.53 |
6657 | 12135 | 8.753497 | AAAACTAAAGGAAATATGCCCTAGAG | 57.247 | 34.615 | 0.00 | 1.58 | 31.36 | 2.43 |
6658 | 12136 | 6.441088 | ACTAAAGGAAATATGCCCTAGAGG | 57.559 | 41.667 | 0.00 | 0.00 | 39.47 | 3.69 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 7.595819 | TTGAATTTTGGTCAAACTATGGTCT | 57.404 | 32.000 | 0.00 | 0.00 | 32.13 | 3.85 |
62 | 64 | 8.324163 | ACATCTGGTCAAACTACTTATTCAAC | 57.676 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
154 | 217 | 6.579292 | CGTCATAGGTCGTTTTGCAAATTTTA | 59.421 | 34.615 | 13.65 | 0.00 | 0.00 | 1.52 |
196 | 259 | 5.886715 | TCAAAATGTTCAGCACGAAAATG | 57.113 | 34.783 | 0.00 | 0.00 | 31.47 | 2.32 |
234 | 302 | 8.974408 | CCATATCTTTTGTATACGATGTCGAAA | 58.026 | 33.333 | 9.67 | 0.00 | 43.02 | 3.46 |
431 | 527 | 3.769739 | AAGGGCAATTTTCAAACTCCC | 57.230 | 42.857 | 0.00 | 0.00 | 0.00 | 4.30 |
432 | 528 | 5.853936 | ACTAAAGGGCAATTTTCAAACTCC | 58.146 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
474 | 577 | 1.134580 | GGGTCTAACCTTTAGTCCCGC | 60.135 | 57.143 | 11.09 | 0.00 | 38.64 | 6.13 |
495 | 599 | 5.168647 | TGTATCACAAACCGGGACTAAAT | 57.831 | 39.130 | 6.32 | 0.00 | 0.00 | 1.40 |
566 | 687 | 0.179045 | CCATGAGCCCCTTTAGTCCG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
593 | 714 | 0.396811 | GTGGCAGACTGGTGTTAGGT | 59.603 | 55.000 | 4.26 | 0.00 | 0.00 | 3.08 |
605 | 726 | 0.770557 | ACTAAAGGGGTGGTGGCAGA | 60.771 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
659 | 780 | 7.156673 | GCTATACATTAGTCCCGGTTCATTTA | 58.843 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
706 | 827 | 4.637483 | AAATGAATCGGCACTAATGTGG | 57.363 | 40.909 | 0.00 | 0.00 | 43.97 | 4.17 |
720 | 841 | 3.732048 | AGTCCCGGTTGGTAAATGAAT | 57.268 | 42.857 | 0.00 | 0.00 | 34.77 | 2.57 |
730 | 851 | 1.207089 | TCAGCTCATTAGTCCCGGTTG | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
777 | 898 | 4.613448 | CGGAATAAATCTCGATCGACTCAC | 59.387 | 45.833 | 15.15 | 0.83 | 0.00 | 3.51 |
778 | 899 | 4.320275 | CCGGAATAAATCTCGATCGACTCA | 60.320 | 45.833 | 15.15 | 1.04 | 0.00 | 3.41 |
779 | 900 | 4.159857 | CCGGAATAAATCTCGATCGACTC | 58.840 | 47.826 | 15.15 | 2.45 | 0.00 | 3.36 |
781 | 902 | 3.243336 | CCCGGAATAAATCTCGATCGAC | 58.757 | 50.000 | 15.15 | 1.28 | 0.00 | 4.20 |
782 | 903 | 2.889045 | ACCCGGAATAAATCTCGATCGA | 59.111 | 45.455 | 18.32 | 18.32 | 0.00 | 3.59 |
783 | 904 | 3.299340 | ACCCGGAATAAATCTCGATCG | 57.701 | 47.619 | 9.36 | 9.36 | 0.00 | 3.69 |
784 | 905 | 5.130292 | TGTACCCGGAATAAATCTCGATC | 57.870 | 43.478 | 0.73 | 0.00 | 0.00 | 3.69 |
798 | 919 | 1.056660 | ATTAGAGCCCATGTACCCGG | 58.943 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
799 | 920 | 2.028385 | GGTATTAGAGCCCATGTACCCG | 60.028 | 54.545 | 0.00 | 0.00 | 0.00 | 5.28 |
802 | 923 | 8.863872 | AATAAATGGTATTAGAGCCCATGTAC | 57.136 | 34.615 | 0.00 | 0.00 | 38.93 | 2.90 |
813 | 934 | 8.405531 | CCGGGATTGCATAATAAATGGTATTAG | 58.594 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
814 | 935 | 7.340743 | CCCGGGATTGCATAATAAATGGTATTA | 59.659 | 37.037 | 18.48 | 0.00 | 0.00 | 0.98 |
815 | 936 | 6.154363 | CCCGGGATTGCATAATAAATGGTATT | 59.846 | 38.462 | 18.48 | 0.00 | 0.00 | 1.89 |
819 | 940 | 3.831911 | ACCCGGGATTGCATAATAAATGG | 59.168 | 43.478 | 32.02 | 0.00 | 0.00 | 3.16 |
822 | 943 | 4.141287 | CAGACCCGGGATTGCATAATAAA | 58.859 | 43.478 | 32.02 | 0.00 | 0.00 | 1.40 |
825 | 946 | 1.819305 | GCAGACCCGGGATTGCATAAT | 60.819 | 52.381 | 33.80 | 11.13 | 36.59 | 1.28 |
843 | 964 | 4.335315 | GGATCGAAAATGATAGTGTTGGCA | 59.665 | 41.667 | 0.00 | 0.00 | 0.00 | 4.92 |
846 | 967 | 6.421377 | TGTGGATCGAAAATGATAGTGTTG | 57.579 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
852 | 973 | 6.508777 | TGACGTATGTGGATCGAAAATGATA | 58.491 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
853 | 974 | 5.356426 | TGACGTATGTGGATCGAAAATGAT | 58.644 | 37.500 | 0.00 | 0.00 | 0.00 | 2.45 |
854 | 975 | 4.749976 | TGACGTATGTGGATCGAAAATGA | 58.250 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
855 | 976 | 5.463499 | TTGACGTATGTGGATCGAAAATG | 57.537 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
856 | 977 | 5.642063 | AGTTTGACGTATGTGGATCGAAAAT | 59.358 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
860 | 982 | 3.861276 | AGTTTGACGTATGTGGATCGA | 57.139 | 42.857 | 0.00 | 0.00 | 0.00 | 3.59 |
864 | 986 | 2.093869 | GGCCTAGTTTGACGTATGTGGA | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
876 | 998 | 2.502130 | GCTCTCTAGTTGGGCCTAGTTT | 59.498 | 50.000 | 4.53 | 0.00 | 36.59 | 2.66 |
880 | 1002 | 2.111384 | CTTGCTCTCTAGTTGGGCCTA | 58.889 | 52.381 | 4.53 | 0.00 | 0.00 | 3.93 |
885 | 1007 | 0.460987 | CGGCCTTGCTCTCTAGTTGG | 60.461 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
890 | 1012 | 2.139323 | TAAGTCGGCCTTGCTCTCTA | 57.861 | 50.000 | 0.00 | 0.00 | 34.46 | 2.43 |
901 | 1023 | 1.069935 | GGGCCTCTCATAAGTCGGC | 59.930 | 63.158 | 0.84 | 0.00 | 38.56 | 5.54 |
903 | 1025 | 0.390860 | CCAGGGCCTCTCATAAGTCG | 59.609 | 60.000 | 0.95 | 0.00 | 0.00 | 4.18 |
921 | 1047 | 0.904865 | CTTTTTGGGGAAGAGGGCCC | 60.905 | 60.000 | 16.46 | 16.46 | 45.25 | 5.80 |
922 | 1048 | 0.114364 | TCTTTTTGGGGAAGAGGGCC | 59.886 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
923 | 1049 | 1.203063 | AGTCTTTTTGGGGAAGAGGGC | 60.203 | 52.381 | 0.00 | 0.00 | 34.05 | 5.19 |
927 | 1053 | 2.986728 | AGGCTAGTCTTTTTGGGGAAGA | 59.013 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
928 | 1054 | 3.084786 | CAGGCTAGTCTTTTTGGGGAAG | 58.915 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
930 | 1056 | 2.344592 | TCAGGCTAGTCTTTTTGGGGA | 58.655 | 47.619 | 0.00 | 0.00 | 0.00 | 4.81 |
933 | 1059 | 6.317391 | CCTTTCTATCAGGCTAGTCTTTTTGG | 59.683 | 42.308 | 0.00 | 0.00 | 0.00 | 3.28 |
936 | 1062 | 5.726793 | TCCCTTTCTATCAGGCTAGTCTTTT | 59.273 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
953 | 1082 | 2.046217 | GGTGCGGGAGTCCCTTTC | 60.046 | 66.667 | 26.04 | 14.72 | 42.67 | 2.62 |
954 | 1083 | 3.647771 | GGGTGCGGGAGTCCCTTT | 61.648 | 66.667 | 26.04 | 0.00 | 42.67 | 3.11 |
961 | 1090 | 2.224209 | ACGATTTATAAGGGTGCGGGAG | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
985 | 1114 | 1.452108 | GATTGTGGGAGAAGGCGGG | 60.452 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
987 | 1116 | 0.179073 | ATCGATTGTGGGAGAAGGCG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
989 | 1118 | 2.698855 | ACATCGATTGTGGGAGAAGG | 57.301 | 50.000 | 0.00 | 0.00 | 37.11 | 3.46 |
1002 | 1131 | 2.369203 | TGTTGGTTTAGTCCCACATCGA | 59.631 | 45.455 | 0.00 | 0.00 | 29.93 | 3.59 |
1003 | 1132 | 2.482721 | GTGTTGGTTTAGTCCCACATCG | 59.517 | 50.000 | 0.00 | 0.00 | 35.96 | 3.84 |
1022 | 1152 | 1.856265 | GCCTCCCAAACTTGCGAGTG | 61.856 | 60.000 | 7.56 | 0.00 | 35.91 | 3.51 |
1027 | 1157 | 4.056125 | GCCGCCTCCCAAACTTGC | 62.056 | 66.667 | 0.00 | 0.00 | 0.00 | 4.01 |
1053 | 1183 | 2.935849 | CCAACTTTTTGCCACCACTTTC | 59.064 | 45.455 | 0.00 | 0.00 | 0.00 | 2.62 |
1060 | 1190 | 2.682352 | ACATTTGCCAACTTTTTGCCAC | 59.318 | 40.909 | 0.00 | 0.00 | 0.00 | 5.01 |
1064 | 1194 | 3.487209 | GCACCACATTTGCCAACTTTTTG | 60.487 | 43.478 | 0.00 | 0.00 | 33.58 | 2.44 |
1090 | 1220 | 0.030908 | CCCTCTAGCGATCGACAACC | 59.969 | 60.000 | 21.57 | 0.00 | 0.00 | 3.77 |
1093 | 1223 | 1.152943 | AGCCCTCTAGCGATCGACA | 60.153 | 57.895 | 21.57 | 3.89 | 38.01 | 4.35 |
1097 | 1227 | 1.873165 | CGAGAGCCCTCTAGCGATC | 59.127 | 63.158 | 0.00 | 0.00 | 40.61 | 3.69 |
1138 | 1271 | 1.275421 | AAGGAGGGCTACTTCCAGGC | 61.275 | 60.000 | 0.00 | 0.00 | 40.27 | 4.85 |
1145 | 1278 | 2.835156 | GTGAAGAAGAAGGAGGGCTACT | 59.165 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1160 | 1293 | 3.367395 | CGGCTATGTCAACTGAGTGAAGA | 60.367 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
1184 | 1317 | 4.166011 | GCACCAGGCATCGAACGC | 62.166 | 66.667 | 1.70 | 1.70 | 43.97 | 4.84 |
1185 | 1318 | 3.853330 | CGCACCAGGCATCGAACG | 61.853 | 66.667 | 0.00 | 0.00 | 45.17 | 3.95 |
1187 | 1320 | 4.776322 | CCCGCACCAGGCATCGAA | 62.776 | 66.667 | 0.00 | 0.00 | 45.17 | 3.71 |
1214 | 1347 | 1.304381 | TCCCCAATGCAAGCACCTC | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
1238 | 1371 | 0.921256 | AAATAGGCTGCCAGGACCCT | 60.921 | 55.000 | 22.65 | 0.00 | 0.00 | 4.34 |
1239 | 1372 | 0.753111 | CAAATAGGCTGCCAGGACCC | 60.753 | 60.000 | 22.65 | 0.00 | 0.00 | 4.46 |
1256 | 1389 | 0.178992 | CTTTGGTCTGGGCCAGTCAA | 60.179 | 55.000 | 31.60 | 29.34 | 40.01 | 3.18 |
1257 | 1390 | 1.455849 | CTTTGGTCTGGGCCAGTCA | 59.544 | 57.895 | 31.60 | 26.01 | 40.01 | 3.41 |
1260 | 1393 | 2.036256 | CCCTTTGGTCTGGGCCAG | 59.964 | 66.667 | 28.01 | 28.01 | 40.01 | 4.85 |
1265 | 1398 | 1.315257 | CGCCATTCCCTTTGGTCTGG | 61.315 | 60.000 | 0.00 | 0.00 | 37.35 | 3.86 |
1300 | 1433 | 1.443828 | GGCCTTTCCTCCGAGCTAG | 59.556 | 63.158 | 0.00 | 0.00 | 0.00 | 3.42 |
1323 | 1456 | 3.483869 | ATCCCCGCTCTTCCTGCC | 61.484 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
1334 | 1467 | 0.107456 | CCACCAAGAGATCATCCCCG | 59.893 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
1340 | 1473 | 1.296392 | CCACGCCACCAAGAGATCA | 59.704 | 57.895 | 0.00 | 0.00 | 0.00 | 2.92 |
1360 | 1494 | 1.298157 | TTTTCTGCACCGCCGATCTG | 61.298 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1362 | 1496 | 1.425428 | CTTTTCTGCACCGCCGATC | 59.575 | 57.895 | 0.00 | 0.00 | 0.00 | 3.69 |
1374 | 1508 | 1.213094 | CCGTCGTCGTGTGCTTTTCT | 61.213 | 55.000 | 0.71 | 0.00 | 35.01 | 2.52 |
1388 | 1522 | 3.031812 | GCACTACTATTTACGACCGTCG | 58.968 | 50.000 | 19.24 | 19.24 | 46.93 | 5.12 |
1389 | 1523 | 3.788163 | GTGCACTACTATTTACGACCGTC | 59.212 | 47.826 | 10.32 | 0.00 | 0.00 | 4.79 |
1390 | 1524 | 3.441572 | AGTGCACTACTATTTACGACCGT | 59.558 | 43.478 | 20.16 | 0.00 | 38.04 | 4.83 |
1391 | 1525 | 3.789756 | CAGTGCACTACTATTTACGACCG | 59.210 | 47.826 | 21.20 | 0.00 | 37.60 | 4.79 |
1392 | 1526 | 4.741342 | ACAGTGCACTACTATTTACGACC | 58.259 | 43.478 | 21.20 | 0.00 | 37.60 | 4.79 |
1393 | 1527 | 4.797349 | GGACAGTGCACTACTATTTACGAC | 59.203 | 45.833 | 21.20 | 4.05 | 37.60 | 4.34 |
1394 | 1528 | 4.460034 | TGGACAGTGCACTACTATTTACGA | 59.540 | 41.667 | 21.20 | 0.00 | 37.60 | 3.43 |
1395 | 1529 | 4.740268 | TGGACAGTGCACTACTATTTACG | 58.260 | 43.478 | 21.20 | 6.25 | 37.60 | 3.18 |
1396 | 1530 | 5.721232 | ACTGGACAGTGCACTACTATTTAC | 58.279 | 41.667 | 21.20 | 4.91 | 40.75 | 2.01 |
1397 | 1531 | 5.995565 | ACTGGACAGTGCACTACTATTTA | 57.004 | 39.130 | 21.20 | 1.75 | 40.75 | 1.40 |
1398 | 1532 | 4.891992 | ACTGGACAGTGCACTACTATTT | 57.108 | 40.909 | 21.20 | 0.00 | 40.75 | 1.40 |
1411 | 1545 | 1.269958 | TGGAGATCACCACTGGACAG | 58.730 | 55.000 | 7.91 | 0.00 | 34.77 | 3.51 |
1417 | 1551 | 0.994247 | TGCCATTGGAGATCACCACT | 59.006 | 50.000 | 11.83 | 3.60 | 39.85 | 4.00 |
1418 | 1552 | 1.747355 | CTTGCCATTGGAGATCACCAC | 59.253 | 52.381 | 11.83 | 1.03 | 39.85 | 4.16 |
1421 | 1555 | 1.396653 | CCCTTGCCATTGGAGATCAC | 58.603 | 55.000 | 6.95 | 0.00 | 0.00 | 3.06 |
1425 | 1559 | 1.574526 | CCTCCCCTTGCCATTGGAGA | 61.575 | 60.000 | 6.95 | 0.00 | 45.93 | 3.71 |
1437 | 1571 | 2.204151 | CCCAACTCCACCTCCCCT | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
1438 | 1572 | 4.048470 | GCCCAACTCCACCTCCCC | 62.048 | 72.222 | 0.00 | 0.00 | 0.00 | 4.81 |
1439 | 1573 | 4.410400 | CGCCCAACTCCACCTCCC | 62.410 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1442 | 1576 | 3.953775 | CACCGCCCAACTCCACCT | 61.954 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
1460 | 1594 | 4.410228 | CCCCTTTTCCTAGATCATGTCTGA | 59.590 | 45.833 | 0.00 | 0.00 | 37.83 | 3.27 |
1476 | 1610 | 4.231140 | CCAATGTGGCCCCCTTTT | 57.769 | 55.556 | 0.00 | 0.00 | 0.00 | 2.27 |
1494 | 1628 | 0.669625 | GGTCGTCCTTCTTTGGTCCG | 60.670 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1497 | 1631 | 1.978580 | AGATGGTCGTCCTTCTTTGGT | 59.021 | 47.619 | 10.61 | 0.00 | 43.00 | 3.67 |
1506 | 1640 | 1.002624 | TTTGGCCAGATGGTCGTCC | 60.003 | 57.895 | 5.11 | 0.00 | 44.44 | 4.79 |
1507 | 1641 | 0.036388 | TCTTTGGCCAGATGGTCGTC | 60.036 | 55.000 | 5.11 | 0.00 | 44.44 | 4.20 |
1508 | 1642 | 0.036010 | CTCTTTGGCCAGATGGTCGT | 60.036 | 55.000 | 5.11 | 0.00 | 44.44 | 4.34 |
1509 | 1643 | 0.250234 | TCTCTTTGGCCAGATGGTCG | 59.750 | 55.000 | 5.11 | 0.00 | 44.44 | 4.79 |
1510 | 1644 | 1.003580 | TGTCTCTTTGGCCAGATGGTC | 59.996 | 52.381 | 5.11 | 0.00 | 41.09 | 4.02 |
1511 | 1645 | 1.067295 | TGTCTCTTTGGCCAGATGGT | 58.933 | 50.000 | 5.11 | 0.00 | 37.57 | 3.55 |
1513 | 1647 | 5.221185 | CCAAATATGTCTCTTTGGCCAGATG | 60.221 | 44.000 | 5.11 | 0.00 | 43.44 | 2.90 |
1514 | 1648 | 4.891756 | CCAAATATGTCTCTTTGGCCAGAT | 59.108 | 41.667 | 5.11 | 0.00 | 43.44 | 2.90 |
1515 | 1649 | 4.272489 | CCAAATATGTCTCTTTGGCCAGA | 58.728 | 43.478 | 5.11 | 0.00 | 43.44 | 3.86 |
1516 | 1650 | 4.644103 | CCAAATATGTCTCTTTGGCCAG | 57.356 | 45.455 | 5.11 | 0.00 | 43.44 | 4.85 |
1529 | 1665 | 2.228059 | CCTCCAGAGCAGCCAAATATG | 58.772 | 52.381 | 0.00 | 0.00 | 0.00 | 1.78 |
1545 | 1681 | 2.341452 | GGGCAGTGTTTTGACCTCC | 58.659 | 57.895 | 0.00 | 0.00 | 43.36 | 4.30 |
1550 | 1686 | 4.640771 | ATTCTAGAGGGCAGTGTTTTGA | 57.359 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
1558 | 1694 | 3.845781 | TTTGGCTATTCTAGAGGGCAG | 57.154 | 47.619 | 14.58 | 4.12 | 35.77 | 4.85 |
1608 | 1744 | 6.723977 | AGAGCTTATCTAGGGGAGTAGAAATG | 59.276 | 42.308 | 0.00 | 0.00 | 36.10 | 2.32 |
1652 | 1791 | 2.048597 | TGCGAGGCACCTAACACG | 60.049 | 61.111 | 0.00 | 0.00 | 31.71 | 4.49 |
1679 | 1818 | 3.475566 | TGTCTTTGACTCCACTCCTTG | 57.524 | 47.619 | 0.00 | 0.00 | 33.15 | 3.61 |
1750 | 1889 | 2.175715 | AGTCCCAAAAGAGCCTCAAAGT | 59.824 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
1761 | 1900 | 0.103937 | TGGCGCAAAAGTCCCAAAAG | 59.896 | 50.000 | 10.83 | 0.00 | 0.00 | 2.27 |
1764 | 1903 | 1.112315 | ATGTGGCGCAAAAGTCCCAA | 61.112 | 50.000 | 10.83 | 0.00 | 0.00 | 4.12 |
1766 | 1905 | 1.080569 | CATGTGGCGCAAAAGTCCC | 60.081 | 57.895 | 10.83 | 0.00 | 0.00 | 4.46 |
1767 | 1906 | 0.878416 | TACATGTGGCGCAAAAGTCC | 59.122 | 50.000 | 10.83 | 0.00 | 0.00 | 3.85 |
1775 | 1914 | 1.378531 | TCCTTCAATACATGTGGCGC | 58.621 | 50.000 | 9.11 | 0.00 | 0.00 | 6.53 |
1785 | 1924 | 9.705290 | GAGGCACTTTTTAAAATTCCTTCAATA | 57.295 | 29.630 | 0.55 | 0.00 | 41.55 | 1.90 |
1796 | 1935 | 6.183360 | GCATGTGTTTGAGGCACTTTTTAAAA | 60.183 | 34.615 | 0.00 | 0.00 | 41.55 | 1.52 |
1798 | 1937 | 4.808364 | GCATGTGTTTGAGGCACTTTTTAA | 59.192 | 37.500 | 0.00 | 0.00 | 41.55 | 1.52 |
1799 | 1938 | 4.367450 | GCATGTGTTTGAGGCACTTTTTA | 58.633 | 39.130 | 0.00 | 0.00 | 41.55 | 1.52 |
1811 | 1950 | 7.481275 | AAATAACTTGAAAGGCATGTGTTTG | 57.519 | 32.000 | 0.00 | 0.00 | 35.32 | 2.93 |
1812 | 1951 | 7.768120 | TGAAAATAACTTGAAAGGCATGTGTTT | 59.232 | 29.630 | 0.00 | 0.00 | 35.32 | 2.83 |
1813 | 1952 | 7.271511 | TGAAAATAACTTGAAAGGCATGTGTT | 58.728 | 30.769 | 0.00 | 0.00 | 35.32 | 3.32 |
1815 | 1954 | 7.147312 | TCTGAAAATAACTTGAAAGGCATGTG | 58.853 | 34.615 | 0.00 | 0.00 | 35.32 | 3.21 |
1816 | 1955 | 7.288810 | TCTGAAAATAACTTGAAAGGCATGT | 57.711 | 32.000 | 0.00 | 0.00 | 36.53 | 3.21 |
1817 | 1956 | 6.810182 | CCTCTGAAAATAACTTGAAAGGCATG | 59.190 | 38.462 | 0.00 | 0.00 | 0.00 | 4.06 |
1818 | 1957 | 6.494835 | ACCTCTGAAAATAACTTGAAAGGCAT | 59.505 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
1820 | 1959 | 6.152379 | CACCTCTGAAAATAACTTGAAAGGC | 58.848 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1821 | 1960 | 6.152379 | GCACCTCTGAAAATAACTTGAAAGG | 58.848 | 40.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1911 | 4966 | 3.558418 | GGCACTTTTCGACAACTAACTCA | 59.442 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
1922 | 4977 | 2.569853 | TCCTAATCCAGGCACTTTTCGA | 59.430 | 45.455 | 0.00 | 0.00 | 45.10 | 3.71 |
1924 | 4979 | 5.921962 | AATTCCTAATCCAGGCACTTTTC | 57.078 | 39.130 | 0.00 | 0.00 | 45.10 | 2.29 |
1925 | 4980 | 7.978099 | AATAATTCCTAATCCAGGCACTTTT | 57.022 | 32.000 | 0.00 | 0.00 | 45.10 | 2.27 |
1931 | 4986 | 5.412904 | CCTCGAAATAATTCCTAATCCAGGC | 59.587 | 44.000 | 0.00 | 0.00 | 45.10 | 4.85 |
1940 | 4995 | 8.641498 | ATGATTATTGCCTCGAAATAATTCCT | 57.359 | 30.769 | 12.54 | 2.28 | 39.28 | 3.36 |
1950 | 5005 | 5.122519 | TGCAACTTATGATTATTGCCTCGA | 58.877 | 37.500 | 5.43 | 0.00 | 45.45 | 4.04 |
1952 | 5007 | 6.742109 | ACATGCAACTTATGATTATTGCCTC | 58.258 | 36.000 | 5.43 | 0.00 | 45.45 | 4.70 |
2009 | 5064 | 4.687901 | AATCCCTTGTTTGGAACTTTGG | 57.312 | 40.909 | 0.00 | 0.00 | 35.03 | 3.28 |
2010 | 5065 | 7.272244 | ACTTAAATCCCTTGTTTGGAACTTTG | 58.728 | 34.615 | 0.00 | 0.00 | 35.03 | 2.77 |
2011 | 5066 | 7.418597 | GGACTTAAATCCCTTGTTTGGAACTTT | 60.419 | 37.037 | 0.00 | 0.00 | 35.03 | 2.66 |
2012 | 5067 | 6.041637 | GGACTTAAATCCCTTGTTTGGAACTT | 59.958 | 38.462 | 0.00 | 0.00 | 35.03 | 2.66 |
2013 | 5068 | 5.538813 | GGACTTAAATCCCTTGTTTGGAACT | 59.461 | 40.000 | 0.00 | 0.00 | 35.03 | 3.01 |
2014 | 5069 | 5.538813 | AGGACTTAAATCCCTTGTTTGGAAC | 59.461 | 40.000 | 0.00 | 0.00 | 39.91 | 3.62 |
2015 | 5070 | 5.711698 | AGGACTTAAATCCCTTGTTTGGAA | 58.288 | 37.500 | 0.00 | 0.00 | 39.91 | 3.53 |
2016 | 5071 | 5.333566 | AGGACTTAAATCCCTTGTTTGGA | 57.666 | 39.130 | 0.00 | 0.00 | 39.91 | 3.53 |
2017 | 5072 | 5.775195 | AGAAGGACTTAAATCCCTTGTTTGG | 59.225 | 40.000 | 0.00 | 0.00 | 40.14 | 3.28 |
2040 | 5095 | 5.653769 | TCTCTCTGCCCAAATGGATAAAAAG | 59.346 | 40.000 | 0.00 | 0.00 | 37.39 | 2.27 |
2064 | 5119 | 0.474184 | CTCCAATCCCGCCATTACCT | 59.526 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2065 | 5120 | 1.172812 | GCTCCAATCCCGCCATTACC | 61.173 | 60.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2196 | 5251 | 3.508762 | CAAATGATGGCTTTCAGCACTC | 58.491 | 45.455 | 0.00 | 0.00 | 45.18 | 3.51 |
2197 | 5252 | 2.232941 | CCAAATGATGGCTTTCAGCACT | 59.767 | 45.455 | 0.00 | 0.00 | 45.18 | 4.40 |
2489 | 5544 | 3.378112 | CCAACCACAAATATGACGATGCT | 59.622 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
2623 | 5678 | 1.920574 | CTCGTGGCAGAGTTAACATCG | 59.079 | 52.381 | 8.61 | 2.25 | 33.75 | 3.84 |
2678 | 5742 | 3.642778 | CTACACGGTGCCTCGGTGG | 62.643 | 68.421 | 8.30 | 0.00 | 46.85 | 4.61 |
2685 | 5749 | 0.882927 | TTGCAGTTCTACACGGTGCC | 60.883 | 55.000 | 8.30 | 0.00 | 32.99 | 5.01 |
2691 | 5755 | 6.428385 | AAGCTATCAATTGCAGTTCTACAC | 57.572 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
2692 | 5756 | 7.064609 | GTGTAAGCTATCAATTGCAGTTCTACA | 59.935 | 37.037 | 0.00 | 7.02 | 0.00 | 2.74 |
2794 | 5858 | 3.181450 | CCACCCTGAACATATCTTCTCCC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
2900 | 5964 | 2.841988 | GGCCGGCAGAGAGAGGAT | 60.842 | 66.667 | 30.85 | 0.00 | 0.00 | 3.24 |
3007 | 6071 | 2.138320 | CCCAGCAGAACATATGTAGCG | 58.862 | 52.381 | 9.21 | 9.79 | 0.00 | 4.26 |
3015 | 6079 | 2.360350 | CGCCACCCAGCAGAACAT | 60.360 | 61.111 | 0.00 | 0.00 | 0.00 | 2.71 |
3049 | 6113 | 3.376078 | GCCCTCACCACCGACGTA | 61.376 | 66.667 | 0.00 | 0.00 | 0.00 | 3.57 |
3115 | 6179 | 0.601841 | GAAGGAAACGGGCAAGACGA | 60.602 | 55.000 | 0.00 | 0.00 | 34.93 | 4.20 |
3132 | 6196 | 5.768164 | GTGACAATCCCTCCTAAAAAGTGAA | 59.232 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3140 | 6204 | 1.553248 | CCACGTGACAATCCCTCCTAA | 59.447 | 52.381 | 19.30 | 0.00 | 0.00 | 2.69 |
3165 | 6229 | 3.431207 | GCCCGGTAGTCTTAATACTGCAA | 60.431 | 47.826 | 10.45 | 0.00 | 34.15 | 4.08 |
3177 | 6241 | 2.030958 | CGTTTGTGGCCCGGTAGTC | 61.031 | 63.158 | 0.00 | 0.00 | 0.00 | 2.59 |
3184 | 6248 | 0.676736 | TCAAAATCCGTTTGTGGCCC | 59.323 | 50.000 | 0.00 | 0.00 | 45.83 | 5.80 |
3193 | 6257 | 3.023832 | GGATCCCAACATCAAAATCCGT | 58.976 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
3201 | 6265 | 0.557238 | CCCCATGGATCCCAACATCA | 59.443 | 55.000 | 15.22 | 0.00 | 36.95 | 3.07 |
3322 | 6386 | 3.083997 | AGGCGGATGGACCAGGAC | 61.084 | 66.667 | 0.00 | 0.00 | 38.90 | 3.85 |
3342 | 6406 | 2.290577 | ACTGCCTGAATGAGTTCTTCCC | 60.291 | 50.000 | 0.00 | 0.00 | 35.33 | 3.97 |
3395 | 6459 | 6.363473 | GTGAGTTCTTTACGTCAAATTCCTG | 58.637 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3409 | 6473 | 2.032071 | CGGCCCCGTGAGTTCTTT | 59.968 | 61.111 | 0.00 | 0.00 | 34.35 | 2.52 |
3431 | 6495 | 3.503748 | CCCTGATTGAATCGAATAAGGGC | 59.496 | 47.826 | 12.82 | 0.00 | 44.29 | 5.19 |
3444 | 6508 | 1.213678 | CCTCATTGCTCCCCTGATTGA | 59.786 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
3464 | 6528 | 2.344950 | CACACTCCAGATGAACAGCTC | 58.655 | 52.381 | 0.00 | 0.00 | 0.00 | 4.09 |
3472 | 6536 | 1.625315 | TCCAACTCCACACTCCAGATG | 59.375 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
3473 | 6537 | 2.030027 | TCCAACTCCACACTCCAGAT | 57.970 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3474 | 6538 | 1.902508 | GATCCAACTCCACACTCCAGA | 59.097 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
3475 | 6539 | 1.905215 | AGATCCAACTCCACACTCCAG | 59.095 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
3476 | 6540 | 1.625315 | CAGATCCAACTCCACACTCCA | 59.375 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
3480 | 6544 | 2.237143 | TCATCCAGATCCAACTCCACAC | 59.763 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3591 | 6658 | 5.485353 | ACATCAAGATCTGTAACCTTGGAGA | 59.515 | 40.000 | 0.00 | 0.00 | 38.19 | 3.71 |
3724 | 6791 | 1.750930 | CTGATCCTCGGATGGGGTG | 59.249 | 63.158 | 2.58 | 0.00 | 34.60 | 4.61 |
3762 | 6829 | 2.048023 | CCATTCCATGCACGCACCT | 61.048 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
3821 | 6888 | 3.003480 | GCTCGCATCCTTTTTCTAGTGT | 58.997 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
3829 | 6896 | 1.598701 | GGGCAAGCTCGCATCCTTTT | 61.599 | 55.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3849 | 6916 | 0.743701 | CCTCATGGTGAGCAGCTGTC | 60.744 | 60.000 | 16.64 | 11.99 | 42.98 | 3.51 |
3879 | 6946 | 3.060272 | GCGGATCATATGAAGTGTTGTCG | 60.060 | 47.826 | 9.99 | 6.32 | 0.00 | 4.35 |
3900 | 6967 | 1.091771 | CATCTCCACCCACACATCGC | 61.092 | 60.000 | 0.00 | 0.00 | 0.00 | 4.58 |
3938 | 7005 | 0.516877 | TGGAAATTCTCGTTGCAGCG | 59.483 | 50.000 | 17.58 | 17.58 | 0.00 | 5.18 |
3940 | 7007 | 2.523015 | GCATGGAAATTCTCGTTGCAG | 58.477 | 47.619 | 0.00 | 0.00 | 34.42 | 4.41 |
4029 | 7096 | 6.430451 | GCAGCGCTTGTGTTAATAATAAGAT | 58.570 | 36.000 | 7.50 | 0.00 | 0.00 | 2.40 |
4154 | 7224 | 4.569943 | ACGAGCACAACATCAGTAAGAAT | 58.430 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
4175 | 7245 | 2.287608 | GCAAACCTGTTAGTTGGCAGAC | 60.288 | 50.000 | 0.00 | 0.00 | 44.64 | 3.51 |
4206 | 7276 | 4.368315 | ACAGAGACATAATATGCGCGAAA | 58.632 | 39.130 | 12.10 | 0.00 | 0.00 | 3.46 |
4383 | 7453 | 4.588106 | TGCAAGAATCCAGTGGAAATGAAA | 59.412 | 37.500 | 17.71 | 2.88 | 34.34 | 2.69 |
4391 | 7461 | 4.021719 | ACAGAAAATGCAAGAATCCAGTGG | 60.022 | 41.667 | 1.40 | 1.40 | 0.00 | 4.00 |
4394 | 7464 | 4.491676 | CCACAGAAAATGCAAGAATCCAG | 58.508 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
4397 | 7467 | 3.256558 | GGCCACAGAAAATGCAAGAATC | 58.743 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
4406 | 7476 | 3.320541 | TCATTGAAACGGCCACAGAAAAT | 59.679 | 39.130 | 2.24 | 0.00 | 0.00 | 1.82 |
4411 | 7481 | 0.109597 | GCTCATTGAAACGGCCACAG | 60.110 | 55.000 | 2.24 | 0.00 | 0.00 | 3.66 |
4412 | 7482 | 0.821301 | TGCTCATTGAAACGGCCACA | 60.821 | 50.000 | 2.24 | 0.00 | 0.00 | 4.17 |
4413 | 7483 | 0.527565 | ATGCTCATTGAAACGGCCAC | 59.472 | 50.000 | 2.24 | 0.00 | 0.00 | 5.01 |
4414 | 7484 | 0.527113 | CATGCTCATTGAAACGGCCA | 59.473 | 50.000 | 2.24 | 0.00 | 0.00 | 5.36 |
4464 | 7534 | 5.201713 | TCAATCTCAAGCGGGTCTTATAG | 57.798 | 43.478 | 0.00 | 0.00 | 32.74 | 1.31 |
4474 | 7544 | 4.271776 | TGTGATAGCAATCAATCTCAAGCG | 59.728 | 41.667 | 0.00 | 0.00 | 43.69 | 4.68 |
4592 | 7662 | 7.054124 | TGTGTCCTTCCCAAACATATTATCTC | 58.946 | 38.462 | 0.00 | 0.00 | 0.00 | 2.75 |
4703 | 7773 | 4.400120 | AGAACCAAACACGCCCTAATTAA | 58.600 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
4704 | 7774 | 4.004982 | GAGAACCAAACACGCCCTAATTA | 58.995 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
4705 | 7775 | 2.817844 | GAGAACCAAACACGCCCTAATT | 59.182 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
4706 | 7776 | 2.433436 | GAGAACCAAACACGCCCTAAT | 58.567 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
4750 | 7820 | 1.348036 | AGGCCCAACTGAGAACTGTAC | 59.652 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
4846 | 7919 | 1.796459 | GACATGCCACGTTTCGTTACT | 59.204 | 47.619 | 0.00 | 0.00 | 38.32 | 2.24 |
4954 | 8034 | 0.833949 | TGTGTGCTGGTAACCTCACA | 59.166 | 50.000 | 0.00 | 0.00 | 36.19 | 3.58 |
5083 | 8167 | 7.496529 | TGGACTATATTGTATTGCTTTGCTC | 57.503 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5115 | 8203 | 0.034059 | CTCTCCGTTGCTCCAGTTGT | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
5305 | 10770 | 0.107508 | CTGATGAACGGCAGGGTCAT | 60.108 | 55.000 | 7.20 | 7.20 | 0.00 | 3.06 |
5388 | 10853 | 0.846693 | ACTTCACCAAGCACTTCCCT | 59.153 | 50.000 | 0.00 | 0.00 | 32.09 | 4.20 |
5567 | 11040 | 2.687200 | ATGGAGGTGGTGCCGCTA | 60.687 | 61.111 | 1.58 | 0.00 | 43.70 | 4.26 |
5584 | 11057 | 8.981647 | GTTTGTTTTCTACTACGATTCCTAACA | 58.018 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
5585 | 11058 | 8.981647 | TGTTTGTTTTCTACTACGATTCCTAAC | 58.018 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
5586 | 11059 | 9.545105 | TTGTTTGTTTTCTACTACGATTCCTAA | 57.455 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
5587 | 11060 | 9.545105 | TTTGTTTGTTTTCTACTACGATTCCTA | 57.455 | 29.630 | 0.00 | 0.00 | 0.00 | 2.94 |
5588 | 11061 | 8.441312 | TTTGTTTGTTTTCTACTACGATTCCT | 57.559 | 30.769 | 0.00 | 0.00 | 0.00 | 3.36 |
5589 | 11062 | 9.505995 | TTTTTGTTTGTTTTCTACTACGATTCC | 57.494 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
5593 | 11066 | 8.800031 | GCAATTTTTGTTTGTTTTCTACTACGA | 58.200 | 29.630 | 0.00 | 0.00 | 0.00 | 3.43 |
5594 | 11067 | 8.053653 | GGCAATTTTTGTTTGTTTTCTACTACG | 58.946 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
5595 | 11068 | 9.093970 | AGGCAATTTTTGTTTGTTTTCTACTAC | 57.906 | 29.630 | 0.00 | 0.00 | 0.00 | 2.73 |
5596 | 11069 | 9.660180 | AAGGCAATTTTTGTTTGTTTTCTACTA | 57.340 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
5610 | 11083 | 3.738791 | GGGTGTTCGTAAGGCAATTTTTG | 59.261 | 43.478 | 0.00 | 0.00 | 38.47 | 2.44 |
5615 | 11088 | 1.613255 | CCTGGGTGTTCGTAAGGCAAT | 60.613 | 52.381 | 0.00 | 0.00 | 38.47 | 3.56 |
5641 | 11114 | 5.369404 | TCCAATCCTCTAATGCACCTTCATA | 59.631 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
5685 | 11158 | 2.329379 | GTCTGCTTCCACTACAACTCG | 58.671 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
5687 | 11160 | 1.961394 | TCGTCTGCTTCCACTACAACT | 59.039 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
5703 | 11177 | 5.994887 | AGTATGATCTACACTGACTCGTC | 57.005 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
5706 | 11180 | 9.724839 | GACTTAAAGTATGATCTACACTGACTC | 57.275 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
5725 | 11199 | 2.730550 | GACCGTTCGAGGGACTTAAA | 57.269 | 50.000 | 11.16 | 0.00 | 41.55 | 1.52 |
5737 | 11211 | 1.131126 | TCATCGTAGGTTCGACCGTTC | 59.869 | 52.381 | 0.00 | 0.00 | 44.90 | 3.95 |
5738 | 11212 | 1.167851 | TCATCGTAGGTTCGACCGTT | 58.832 | 50.000 | 0.00 | 0.00 | 44.90 | 4.44 |
5739 | 11213 | 1.135575 | GTTCATCGTAGGTTCGACCGT | 60.136 | 52.381 | 0.00 | 0.00 | 44.90 | 4.83 |
5740 | 11214 | 1.542544 | GTTCATCGTAGGTTCGACCG | 58.457 | 55.000 | 0.00 | 0.00 | 44.90 | 4.79 |
5741 | 11215 | 1.131126 | TCGTTCATCGTAGGTTCGACC | 59.869 | 52.381 | 0.00 | 0.00 | 42.56 | 4.79 |
5742 | 11216 | 2.532531 | TCGTTCATCGTAGGTTCGAC | 57.467 | 50.000 | 0.00 | 0.00 | 42.56 | 4.20 |
5743 | 11217 | 2.032550 | GGATCGTTCATCGTAGGTTCGA | 59.967 | 50.000 | 0.00 | 0.00 | 43.86 | 3.71 |
5744 | 11218 | 2.382519 | GGATCGTTCATCGTAGGTTCG | 58.617 | 52.381 | 0.00 | 0.00 | 40.80 | 3.95 |
5752 | 11226 | 1.587876 | TTCGCGGGATCGTTCATCG | 60.588 | 57.895 | 6.13 | 0.62 | 38.89 | 3.84 |
5765 | 11239 | 0.942410 | TCGTTTGAGGAAGGTTCGCG | 60.942 | 55.000 | 0.00 | 0.00 | 0.00 | 5.87 |
5785 | 11259 | 1.180029 | TCGGTCTTTAGTTCGAGGGG | 58.820 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5787 | 11261 | 2.666994 | GCTTTCGGTCTTTAGTTCGAGG | 59.333 | 50.000 | 0.00 | 0.00 | 33.11 | 4.63 |
5788 | 11262 | 3.121445 | GTGCTTTCGGTCTTTAGTTCGAG | 59.879 | 47.826 | 0.00 | 0.00 | 33.11 | 4.04 |
5789 | 11263 | 3.054878 | GTGCTTTCGGTCTTTAGTTCGA | 58.945 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
5790 | 11264 | 2.160013 | CGTGCTTTCGGTCTTTAGTTCG | 60.160 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
5796 | 11270 | 1.227853 | AGGCGTGCTTTCGGTCTTT | 60.228 | 52.632 | 0.00 | 0.00 | 0.00 | 2.52 |
5804 | 11278 | 2.744202 | CAATTGTAGAGAGGCGTGCTTT | 59.256 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
5831 | 11305 | 0.165079 | GTTGCACCGACAACCATACG | 59.835 | 55.000 | 0.00 | 0.00 | 43.34 | 3.06 |
5936 | 11410 | 3.412386 | CACCCTTTGGTTTCTCGAAGAT | 58.588 | 45.455 | 0.00 | 0.00 | 44.75 | 2.40 |
5959 | 11433 | 4.072131 | TGGCTTGTCTTGGTCTTATTGAC | 58.928 | 43.478 | 0.00 | 0.00 | 44.63 | 3.18 |
5964 | 11438 | 4.431416 | TCTTTGGCTTGTCTTGGTCTTA | 57.569 | 40.909 | 0.00 | 0.00 | 0.00 | 2.10 |
5991 | 11465 | 5.377478 | GGAGGTTTTCCCCTTAGTGATATG | 58.623 | 45.833 | 0.00 | 0.00 | 40.37 | 1.78 |
6068 | 11543 | 2.757077 | CTTGCCGGGGAGGTCTTT | 59.243 | 61.111 | 2.18 | 0.00 | 43.70 | 2.52 |
6108 | 11583 | 2.665603 | GAGCCTTGACGGGAAGCT | 59.334 | 61.111 | 0.00 | 0.00 | 0.00 | 3.74 |
6116 | 11591 | 2.435059 | GAGCGGTGGAGCCTTGAC | 60.435 | 66.667 | 0.00 | 0.00 | 38.01 | 3.18 |
6249 | 11726 | 1.293498 | GTGACACGCCTCTGGATGT | 59.707 | 57.895 | 0.00 | 0.00 | 0.00 | 3.06 |
6280 | 11757 | 1.665442 | GCGCCATTCAACCACCTTT | 59.335 | 52.632 | 0.00 | 0.00 | 0.00 | 3.11 |
6348 | 11825 | 0.957395 | AGACAGGACAAGGCGCATTG | 60.957 | 55.000 | 31.07 | 31.07 | 36.22 | 2.82 |
6373 | 11850 | 6.131972 | AGCCACATTGCTATCATACCTAAT | 57.868 | 37.500 | 0.00 | 0.00 | 40.56 | 1.73 |
6389 | 11866 | 7.559335 | TTATCCAGTGATTAGATAGCCACAT | 57.441 | 36.000 | 0.00 | 0.00 | 32.18 | 3.21 |
6495 | 11972 | 1.268386 | GCAGCTACACGCGTATGAGTA | 60.268 | 52.381 | 13.44 | 9.36 | 45.59 | 2.59 |
6529 | 12006 | 1.448119 | GCTTAATCCCGGCAAGCTCC | 61.448 | 60.000 | 16.47 | 0.00 | 41.14 | 4.70 |
6532 | 12009 | 1.654023 | AACGCTTAATCCCGGCAAGC | 61.654 | 55.000 | 14.69 | 14.69 | 40.98 | 4.01 |
6542 | 12020 | 2.017049 | GGTGGAGATGCAACGCTTAAT | 58.983 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
6545 | 12023 | 1.073025 | TGGTGGAGATGCAACGCTT | 59.927 | 52.632 | 0.00 | 0.00 | 0.00 | 4.68 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.