Multiple sequence alignment - TraesCS5B01G470000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G470000 chr5B 100.000 6659 0 0 1 6659 643407088 643400430 0.000000e+00 12297.0
1 TraesCS5B01G470000 chr5B 89.513 801 56 13 1 776 602858964 602859761 0.000000e+00 989.0
2 TraesCS5B01G470000 chr5B 87.656 802 95 4 5839 6638 203603835 203604634 0.000000e+00 929.0
3 TraesCS5B01G470000 chr5B 87.894 793 72 16 4 776 596986435 596985647 0.000000e+00 911.0
4 TraesCS5B01G470000 chr5B 86.257 764 61 25 38 777 578690904 578691647 0.000000e+00 789.0
5 TraesCS5B01G470000 chr5B 83.219 584 82 11 4710 5288 302082512 302081940 7.650000e-144 521.0
6 TraesCS5B01G470000 chr5B 84.588 279 37 4 5289 5563 302079565 302079289 8.510000e-69 272.0
7 TraesCS5B01G470000 chr5B 91.304 69 4 2 1 68 87782927 87782994 7.110000e-15 93.5
8 TraesCS5B01G470000 chr5B 92.188 64 4 1 4 67 227957774 227957712 9.200000e-14 89.8
9 TraesCS5B01G470000 chr5B 93.220 59 2 2 4 62 54073098 54073042 1.190000e-12 86.1
10 TraesCS5B01G470000 chr5D 93.876 4131 160 40 1871 5959 512393327 512389248 0.000000e+00 6141.0
11 TraesCS5B01G470000 chr5D 85.024 1055 111 32 777 1811 512397318 512396291 0.000000e+00 1029.0
12 TraesCS5B01G470000 chr5D 86.928 153 16 3 5585 5736 421222686 421222835 1.150000e-37 169.0
13 TraesCS5B01G470000 chr5D 87.097 93 12 0 3636 3728 542275434 542275526 9.130000e-19 106.0
14 TraesCS5B01G470000 chr7D 90.363 799 75 2 5841 6638 274505642 274506439 0.000000e+00 1048.0
15 TraesCS5B01G470000 chr7D 87.950 805 90 4 5836 6638 274487605 274488404 0.000000e+00 942.0
16 TraesCS5B01G470000 chr7D 88.000 800 92 4 5840 6637 352904447 352903650 0.000000e+00 942.0
17 TraesCS5B01G470000 chr2D 88.543 803 89 3 5837 6638 633704187 633704987 0.000000e+00 970.0
18 TraesCS5B01G470000 chr2D 84.810 553 65 14 39 578 558292168 558291622 7.600000e-149 538.0
19 TraesCS5B01G470000 chr2D 86.184 304 33 7 5288 5587 326778419 326778717 3.000000e-83 320.0
20 TraesCS5B01G470000 chr1B 87.920 803 91 6 5838 6638 202577980 202578778 0.000000e+00 941.0
21 TraesCS5B01G470000 chr1B 85.820 811 74 17 4 784 632768891 632768092 0.000000e+00 822.0
22 TraesCS5B01G470000 chr1B 87.391 690 57 17 1 679 527875656 527876326 0.000000e+00 765.0
23 TraesCS5B01G470000 chr3D 88.030 802 85 9 5840 6638 185744206 185744999 0.000000e+00 939.0
24 TraesCS5B01G470000 chr3D 84.554 751 81 16 39 777 588313195 588312468 0.000000e+00 712.0
25 TraesCS5B01G470000 chr3D 87.302 441 38 12 37 469 605080277 605079847 7.760000e-134 488.0
26 TraesCS5B01G470000 chr3D 78.491 530 104 10 2078 2602 3371008 3371532 8.270000e-89 339.0
27 TraesCS5B01G470000 chr3D 78.571 182 33 5 2709 2887 3371606 3371784 1.520000e-21 115.0
28 TraesCS5B01G470000 chr1D 87.905 802 91 5 5839 6638 209446451 209445654 0.000000e+00 939.0
29 TraesCS5B01G470000 chr1D 82.759 870 128 13 4710 5567 114212194 114213053 0.000000e+00 756.0
30 TraesCS5B01G470000 chr1D 86.511 556 58 9 5019 5560 141897982 141897430 4.450000e-166 595.0
31 TraesCS5B01G470000 chrUn 87.875 800 93 4 5841 6638 264826904 264827701 0.000000e+00 937.0
32 TraesCS5B01G470000 chrUn 87.327 797 66 19 4 776 22615399 22614614 0.000000e+00 880.0
33 TraesCS5B01G470000 chr6B 88.593 789 66 14 11 777 475813104 475813890 0.000000e+00 937.0
34 TraesCS5B01G470000 chr6B 80.632 253 39 6 5585 5835 658617194 658617438 3.170000e-43 187.0
35 TraesCS5B01G470000 chr6B 100.000 28 0 0 6632 6659 661684493 661684466 1.200000e-02 52.8
36 TraesCS5B01G470000 chr2B 86.891 801 73 22 1 776 574005065 574005858 0.000000e+00 869.0
37 TraesCS5B01G470000 chr2B 82.020 812 76 35 4 793 717042118 717041355 1.580000e-175 627.0
38 TraesCS5B01G470000 chr2B 77.011 261 42 13 5584 5839 507569245 507568998 4.190000e-27 134.0
39 TraesCS5B01G470000 chr4A 84.193 892 118 12 4711 5584 518857284 518856398 0.000000e+00 845.0
40 TraesCS5B01G470000 chr4A 83.519 898 130 9 4703 5584 416226879 416227774 0.000000e+00 822.0
41 TraesCS5B01G470000 chr4A 85.796 697 74 16 37 720 743251842 743252526 0.000000e+00 715.0
42 TraesCS5B01G470000 chr4A 82.895 532 76 10 254 776 743285415 743285940 1.310000e-126 464.0
43 TraesCS5B01G470000 chr5A 82.683 872 130 13 4710 5565 354972306 354971440 0.000000e+00 754.0
44 TraesCS5B01G470000 chr3A 82.115 889 118 19 4710 5584 51697172 51696311 0.000000e+00 723.0
45 TraesCS5B01G470000 chr3A 80.297 807 132 19 4770 5560 453296812 453297607 9.620000e-163 584.0
46 TraesCS5B01G470000 chr3A 78.099 484 94 12 2077 2554 540338 540815 5.050000e-76 296.0
47 TraesCS5B01G470000 chr2A 84.828 725 92 10 4711 5422 513643937 513643218 0.000000e+00 713.0
48 TraesCS5B01G470000 chr2A 79.038 520 93 11 2088 2602 754609654 754610162 6.390000e-90 342.0
49 TraesCS5B01G470000 chr2A 81.944 216 35 4 811 1025 104922116 104921904 5.310000e-41 180.0
50 TraesCS5B01G470000 chr2A 100.000 30 0 0 6630 6659 759048612 759048641 1.000000e-03 56.5
51 TraesCS5B01G470000 chr1A 81.591 880 130 20 4722 5584 124529002 124529866 0.000000e+00 699.0
52 TraesCS5B01G470000 chr1A 84.229 558 61 19 37 578 86066672 86066126 9.900000e-143 518.0
53 TraesCS5B01G470000 chr1A 83.039 566 68 16 37 578 550688432 550687871 7.760000e-134 488.0
54 TraesCS5B01G470000 chr1A 83.884 242 29 5 5596 5835 375796834 375796601 8.690000e-54 222.0
55 TraesCS5B01G470000 chr4B 81.808 874 103 19 4709 5564 226516591 226515756 0.000000e+00 682.0
56 TraesCS5B01G470000 chr7B 85.604 646 79 8 4868 5501 413577677 413577034 0.000000e+00 665.0
57 TraesCS5B01G470000 chr7B 83.740 246 38 2 777 1022 685195529 685195772 1.440000e-56 231.0
58 TraesCS5B01G470000 chr7B 100.000 28 0 0 6632 6659 84192905 84192932 1.200000e-02 52.8
59 TraesCS5B01G470000 chr7B 100.000 28 0 0 6632 6659 327570973 327570946 1.200000e-02 52.8
60 TraesCS5B01G470000 chr3B 86.873 518 53 11 1 514 772450204 772450710 3.490000e-157 566.0
61 TraesCS5B01G470000 chr3B 77.358 795 141 27 4708 5498 808022131 808022890 1.030000e-117 435.0
62 TraesCS5B01G470000 chr3B 82.051 78 12 1 858 935 769705121 769705046 1.550000e-06 65.8
63 TraesCS5B01G470000 chr3B 100.000 29 0 0 6631 6659 394028079 394028107 3.000000e-03 54.7
64 TraesCS5B01G470000 chr4D 85.271 258 27 6 5583 5839 370308057 370307810 8.570000e-64 255.0
65 TraesCS5B01G470000 chr4D 84.400 250 28 7 5587 5835 22044543 22044782 1.120000e-57 235.0
66 TraesCS5B01G470000 chr4D 100.000 28 0 0 6632 6659 32485037 32485010 1.200000e-02 52.8
67 TraesCS5B01G470000 chr6A 75.523 478 104 12 2134 2603 616033477 616033005 8.690000e-54 222.0
68 TraesCS5B01G470000 chr6A 82.101 257 36 7 5585 5839 122735703 122735455 1.880000e-50 211.0
69 TraesCS5B01G470000 chr6A 78.295 129 26 2 2805 2932 616032836 616032709 1.540000e-11 82.4
70 TraesCS5B01G470000 chr6A 100.000 31 0 0 6629 6659 599616689 599616719 2.590000e-04 58.4
71 TraesCS5B01G470000 chr6D 85.263 190 17 7 5585 5773 385668936 385669115 1.140000e-42 185.0
72 TraesCS5B01G470000 chr6D 87.742 155 15 4 5583 5736 302247088 302246937 1.910000e-40 178.0
73 TraesCS5B01G470000 chr6D 100.000 29 0 0 6631 6659 49542839 49542867 3.000000e-03 54.7
74 TraesCS5B01G470000 chr6D 100.000 28 0 0 6632 6659 102172465 102172492 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G470000 chr5B 643400430 643407088 6658 True 12297.0 12297 100.0000 1 6659 1 chr5B.!!$R4 6658
1 TraesCS5B01G470000 chr5B 602858964 602859761 797 False 989.0 989 89.5130 1 776 1 chr5B.!!$F4 775
2 TraesCS5B01G470000 chr5B 203603835 203604634 799 False 929.0 929 87.6560 5839 6638 1 chr5B.!!$F2 799
3 TraesCS5B01G470000 chr5B 596985647 596986435 788 True 911.0 911 87.8940 4 776 1 chr5B.!!$R3 772
4 TraesCS5B01G470000 chr5B 578690904 578691647 743 False 789.0 789 86.2570 38 777 1 chr5B.!!$F3 739
5 TraesCS5B01G470000 chr5B 302079289 302082512 3223 True 396.5 521 83.9035 4710 5563 2 chr5B.!!$R5 853
6 TraesCS5B01G470000 chr5D 512389248 512397318 8070 True 3585.0 6141 89.4500 777 5959 2 chr5D.!!$R1 5182
7 TraesCS5B01G470000 chr7D 274505642 274506439 797 False 1048.0 1048 90.3630 5841 6638 1 chr7D.!!$F2 797
8 TraesCS5B01G470000 chr7D 274487605 274488404 799 False 942.0 942 87.9500 5836 6638 1 chr7D.!!$F1 802
9 TraesCS5B01G470000 chr7D 352903650 352904447 797 True 942.0 942 88.0000 5840 6637 1 chr7D.!!$R1 797
10 TraesCS5B01G470000 chr2D 633704187 633704987 800 False 970.0 970 88.5430 5837 6638 1 chr2D.!!$F2 801
11 TraesCS5B01G470000 chr2D 558291622 558292168 546 True 538.0 538 84.8100 39 578 1 chr2D.!!$R1 539
12 TraesCS5B01G470000 chr1B 202577980 202578778 798 False 941.0 941 87.9200 5838 6638 1 chr1B.!!$F1 800
13 TraesCS5B01G470000 chr1B 632768092 632768891 799 True 822.0 822 85.8200 4 784 1 chr1B.!!$R1 780
14 TraesCS5B01G470000 chr1B 527875656 527876326 670 False 765.0 765 87.3910 1 679 1 chr1B.!!$F2 678
15 TraesCS5B01G470000 chr3D 185744206 185744999 793 False 939.0 939 88.0300 5840 6638 1 chr3D.!!$F1 798
16 TraesCS5B01G470000 chr3D 588312468 588313195 727 True 712.0 712 84.5540 39 777 1 chr3D.!!$R1 738
17 TraesCS5B01G470000 chr3D 3371008 3371784 776 False 227.0 339 78.5310 2078 2887 2 chr3D.!!$F2 809
18 TraesCS5B01G470000 chr1D 209445654 209446451 797 True 939.0 939 87.9050 5839 6638 1 chr1D.!!$R2 799
19 TraesCS5B01G470000 chr1D 114212194 114213053 859 False 756.0 756 82.7590 4710 5567 1 chr1D.!!$F1 857
20 TraesCS5B01G470000 chr1D 141897430 141897982 552 True 595.0 595 86.5110 5019 5560 1 chr1D.!!$R1 541
21 TraesCS5B01G470000 chrUn 264826904 264827701 797 False 937.0 937 87.8750 5841 6638 1 chrUn.!!$F1 797
22 TraesCS5B01G470000 chrUn 22614614 22615399 785 True 880.0 880 87.3270 4 776 1 chrUn.!!$R1 772
23 TraesCS5B01G470000 chr6B 475813104 475813890 786 False 937.0 937 88.5930 11 777 1 chr6B.!!$F1 766
24 TraesCS5B01G470000 chr2B 574005065 574005858 793 False 869.0 869 86.8910 1 776 1 chr2B.!!$F1 775
25 TraesCS5B01G470000 chr2B 717041355 717042118 763 True 627.0 627 82.0200 4 793 1 chr2B.!!$R2 789
26 TraesCS5B01G470000 chr4A 518856398 518857284 886 True 845.0 845 84.1930 4711 5584 1 chr4A.!!$R1 873
27 TraesCS5B01G470000 chr4A 416226879 416227774 895 False 822.0 822 83.5190 4703 5584 1 chr4A.!!$F1 881
28 TraesCS5B01G470000 chr4A 743251842 743252526 684 False 715.0 715 85.7960 37 720 1 chr4A.!!$F2 683
29 TraesCS5B01G470000 chr4A 743285415 743285940 525 False 464.0 464 82.8950 254 776 1 chr4A.!!$F3 522
30 TraesCS5B01G470000 chr5A 354971440 354972306 866 True 754.0 754 82.6830 4710 5565 1 chr5A.!!$R1 855
31 TraesCS5B01G470000 chr3A 51696311 51697172 861 True 723.0 723 82.1150 4710 5584 1 chr3A.!!$R1 874
32 TraesCS5B01G470000 chr3A 453296812 453297607 795 False 584.0 584 80.2970 4770 5560 1 chr3A.!!$F2 790
33 TraesCS5B01G470000 chr2A 513643218 513643937 719 True 713.0 713 84.8280 4711 5422 1 chr2A.!!$R2 711
34 TraesCS5B01G470000 chr2A 754609654 754610162 508 False 342.0 342 79.0380 2088 2602 1 chr2A.!!$F1 514
35 TraesCS5B01G470000 chr1A 124529002 124529866 864 False 699.0 699 81.5910 4722 5584 1 chr1A.!!$F1 862
36 TraesCS5B01G470000 chr1A 86066126 86066672 546 True 518.0 518 84.2290 37 578 1 chr1A.!!$R1 541
37 TraesCS5B01G470000 chr1A 550687871 550688432 561 True 488.0 488 83.0390 37 578 1 chr1A.!!$R3 541
38 TraesCS5B01G470000 chr4B 226515756 226516591 835 True 682.0 682 81.8080 4709 5564 1 chr4B.!!$R1 855
39 TraesCS5B01G470000 chr7B 413577034 413577677 643 True 665.0 665 85.6040 4868 5501 1 chr7B.!!$R2 633
40 TraesCS5B01G470000 chr3B 772450204 772450710 506 False 566.0 566 86.8730 1 514 1 chr3B.!!$F2 513
41 TraesCS5B01G470000 chr3B 808022131 808022890 759 False 435.0 435 77.3580 4708 5498 1 chr3B.!!$F3 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 936 0.031917 TTCCGGGTACATGGGCTCTA 60.032 55.0 0.00 0.00 0.00 2.43 F
1097 1227 0.036388 ATGTGGTGCTAGGGTTGTCG 60.036 55.0 0.00 0.00 0.00 4.35 F
1392 1526 0.111704 CAGAAAAGCACACGACGACG 60.112 55.0 5.58 5.58 45.75 5.12 F
2678 5742 0.039527 GGTGGATGTTTTGGACGCAC 60.040 55.0 0.00 0.00 0.00 5.34 F
3237 6301 0.240945 GGGCAACATGACCTGTTTCG 59.759 55.0 0.00 0.00 45.98 3.46 F
4846 7919 0.399091 CCCTCTAGTCTGCATGGGGA 60.399 60.0 0.00 0.00 34.71 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 1900 0.103937 TGGCGCAAAAGTCCCAAAAG 59.896 50.0 10.83 0.0 0.00 2.27 R
2064 5119 0.474184 CTCCAATCCCGCCATTACCT 59.526 55.0 0.00 0.0 0.00 3.08 R
3201 6265 0.557238 CCCCATGGATCCCAACATCA 59.443 55.0 15.22 0.0 36.95 3.07 R
4411 7481 0.109597 GCTCATTGAAACGGCCACAG 60.110 55.0 2.24 0.0 0.00 3.66 R
5115 8203 0.034059 CTCTCCGTTGCTCCAGTTGT 59.966 55.0 0.00 0.0 0.00 3.32 R
5831 11305 0.165079 GTTGCACCGACAACCATACG 59.835 55.0 0.00 0.0 43.34 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 99 8.322906 TGTTGAATAAGTAGTTTGACCAGATG 57.677 34.615 0.00 0.00 0.00 2.90
133 196 8.416329 ACTGAAATTTGAGCATAACTTGTTTCT 58.584 29.630 4.41 0.00 0.00 2.52
196 259 2.626455 GGTCGAATTCGGATGCGC 59.374 61.111 26.47 0.00 40.29 6.09
421 517 1.555477 AAAAGGCGATACCCGGTGGA 61.555 55.000 0.00 0.00 40.58 4.02
474 577 0.107831 TCCCGGTTTGTGTCTCCAAG 59.892 55.000 0.00 0.00 0.00 3.61
495 599 2.181975 CGGGACTAAAGGTTAGACCCA 58.818 52.381 25.19 0.00 45.61 4.51
605 726 2.590114 GCCCCGACCTAACACCAGT 61.590 63.158 0.00 0.00 0.00 4.00
659 780 3.134081 CACAAACCGGGACTATAGGTCAT 59.866 47.826 6.32 0.00 46.16 3.06
679 800 5.820947 GTCATAAATGAACCGGGACTAATGT 59.179 40.000 6.32 0.00 38.75 2.71
706 827 0.108041 TTCGAACCGGGACTAATGGC 60.108 55.000 6.32 0.00 0.00 4.40
720 841 0.034574 AATGGCCACATTAGTGCCGA 60.035 50.000 8.16 0.00 45.17 5.54
730 851 5.505654 CCACATTAGTGCCGATTCATTTACC 60.506 44.000 0.00 0.00 44.53 2.85
777 898 7.277981 ACATTAGGTCATTTTTCTACTAGTGCG 59.722 37.037 5.39 0.00 0.00 5.34
778 899 5.148651 AGGTCATTTTTCTACTAGTGCGT 57.851 39.130 5.39 0.00 0.00 5.24
779 900 4.929808 AGGTCATTTTTCTACTAGTGCGTG 59.070 41.667 5.39 0.00 0.00 5.34
781 902 5.062308 GGTCATTTTTCTACTAGTGCGTGAG 59.938 44.000 5.39 0.00 0.00 3.51
782 903 5.634020 GTCATTTTTCTACTAGTGCGTGAGT 59.366 40.000 5.39 0.00 0.00 3.41
783 904 5.862323 TCATTTTTCTACTAGTGCGTGAGTC 59.138 40.000 5.39 0.00 0.00 3.36
784 905 3.466712 TTTCTACTAGTGCGTGAGTCG 57.533 47.619 5.39 0.00 43.12 4.18
798 919 4.087366 GCGTGAGTCGATCGAGATTTATTC 59.913 45.833 20.09 3.85 42.86 1.75
799 920 4.613448 CGTGAGTCGATCGAGATTTATTCC 59.387 45.833 20.09 3.06 42.86 3.01
802 923 3.057456 AGTCGATCGAGATTTATTCCGGG 60.057 47.826 20.09 0.00 0.00 5.73
809 930 3.994392 CGAGATTTATTCCGGGTACATGG 59.006 47.826 0.00 0.00 0.00 3.66
813 934 1.053424 TATTCCGGGTACATGGGCTC 58.947 55.000 0.00 0.00 0.00 4.70
814 935 0.694444 ATTCCGGGTACATGGGCTCT 60.694 55.000 0.00 0.00 0.00 4.09
815 936 0.031917 TTCCGGGTACATGGGCTCTA 60.032 55.000 0.00 0.00 0.00 2.43
819 940 2.028385 CCGGGTACATGGGCTCTAATAC 60.028 54.545 0.00 0.00 0.00 1.89
822 943 3.587506 GGGTACATGGGCTCTAATACCAT 59.412 47.826 11.37 0.00 45.48 3.55
825 946 6.240060 GGGTACATGGGCTCTAATACCATTTA 60.240 42.308 11.37 0.00 42.08 1.40
843 964 4.447138 TTTATTATGCAATCCCGGGTCT 57.553 40.909 22.86 6.42 0.00 3.85
846 967 2.337879 TATGCAATCCCGGGTCTGCC 62.338 60.000 32.71 21.19 33.78 4.85
852 973 3.953775 CCCGGGTCTGCCAACACT 61.954 66.667 14.18 0.00 36.17 3.55
853 974 2.589157 CCCGGGTCTGCCAACACTA 61.589 63.158 14.18 0.00 36.17 2.74
854 975 1.602237 CCGGGTCTGCCAACACTAT 59.398 57.895 0.00 0.00 36.17 2.12
855 976 0.462047 CCGGGTCTGCCAACACTATC 60.462 60.000 0.00 0.00 36.17 2.08
856 977 0.249120 CGGGTCTGCCAACACTATCA 59.751 55.000 0.00 0.00 36.17 2.15
860 982 3.763897 GGGTCTGCCAACACTATCATTTT 59.236 43.478 0.00 0.00 36.17 1.82
864 986 5.065218 GTCTGCCAACACTATCATTTTCGAT 59.935 40.000 0.00 0.00 0.00 3.59
876 998 4.749976 TCATTTTCGATCCACATACGTCA 58.250 39.130 0.00 0.00 0.00 4.35
880 1002 3.861276 TCGATCCACATACGTCAAACT 57.139 42.857 0.00 0.00 0.00 2.66
885 1007 2.093869 TCCACATACGTCAAACTAGGCC 60.094 50.000 0.00 0.00 0.00 5.19
890 1012 0.763035 ACGTCAAACTAGGCCCAACT 59.237 50.000 0.00 0.00 0.00 3.16
901 1023 0.107459 GGCCCAACTAGAGAGCAAGG 60.107 60.000 0.00 0.00 0.00 3.61
903 1025 0.107459 CCCAACTAGAGAGCAAGGCC 60.107 60.000 0.00 0.00 0.00 5.19
921 1047 0.390860 CCGACTTATGAGAGGCCCTG 59.609 60.000 0.00 0.00 0.00 4.45
922 1048 0.390860 CGACTTATGAGAGGCCCTGG 59.609 60.000 0.00 0.00 0.00 4.45
923 1049 0.761802 GACTTATGAGAGGCCCTGGG 59.238 60.000 8.86 8.86 0.00 4.45
953 1082 4.164221 TCCCCAAAAAGACTAGCCTGATAG 59.836 45.833 0.00 0.00 0.00 2.08
954 1083 4.164221 CCCCAAAAAGACTAGCCTGATAGA 59.836 45.833 0.00 0.00 0.00 1.98
961 1090 4.219919 AGACTAGCCTGATAGAAAGGGAC 58.780 47.826 0.00 0.00 35.17 4.46
985 1114 2.542595 CCGCACCCTTATAAATCGTGTC 59.457 50.000 7.62 1.97 0.00 3.67
987 1116 2.876550 GCACCCTTATAAATCGTGTCCC 59.123 50.000 7.62 0.00 0.00 4.46
989 1118 2.140717 CCCTTATAAATCGTGTCCCGC 58.859 52.381 0.00 0.00 36.19 6.13
992 1121 3.463944 CTTATAAATCGTGTCCCGCCTT 58.536 45.455 0.00 0.00 36.19 4.35
1002 1131 1.923395 TCCCGCCTTCTCCCACAAT 60.923 57.895 0.00 0.00 0.00 2.71
1003 1132 1.452108 CCCGCCTTCTCCCACAATC 60.452 63.158 0.00 0.00 0.00 2.67
1022 1152 3.048337 TCGATGTGGGACTAAACCAAC 57.952 47.619 0.00 0.00 40.24 3.77
1027 1157 2.140717 GTGGGACTAAACCAACACTCG 58.859 52.381 0.00 0.00 40.24 4.18
1060 1190 1.508088 GGCGCAATGAGGAAAGTGG 59.492 57.895 10.83 0.00 0.00 4.00
1064 1194 0.244721 GCAATGAGGAAAGTGGTGGC 59.755 55.000 0.00 0.00 0.00 5.01
1090 1220 1.067635 GTTGGCAAATGTGGTGCTAGG 60.068 52.381 0.00 0.00 41.88 3.02
1093 1223 1.256812 GCAAATGTGGTGCTAGGGTT 58.743 50.000 0.00 0.00 39.00 4.11
1097 1227 0.036388 ATGTGGTGCTAGGGTTGTCG 60.036 55.000 0.00 0.00 0.00 4.35
1104 1234 0.666913 GCTAGGGTTGTCGATCGCTA 59.333 55.000 11.09 4.02 0.00 4.26
1160 1293 2.192263 CTGGAAGTAGCCCTCCTTCTT 58.808 52.381 1.49 0.00 37.73 2.52
1178 1311 6.267699 TCCTTCTTCTTCACTCAGTTGACATA 59.732 38.462 0.00 0.00 0.00 2.29
1180 1313 5.473931 TCTTCTTCACTCAGTTGACATAGC 58.526 41.667 0.00 0.00 0.00 2.97
1181 1314 4.193826 TCTTCACTCAGTTGACATAGCC 57.806 45.455 0.00 0.00 0.00 3.93
1184 1317 0.537188 ACTCAGTTGACATAGCCGGG 59.463 55.000 2.18 0.00 0.00 5.73
1185 1318 0.811616 CTCAGTTGACATAGCCGGGC 60.812 60.000 12.11 12.11 0.00 6.13
1187 1320 2.125269 GTTGACATAGCCGGGCGT 60.125 61.111 14.39 5.45 0.00 5.68
1188 1321 1.743995 GTTGACATAGCCGGGCGTT 60.744 57.895 14.39 1.65 0.00 4.84
1189 1322 1.448893 TTGACATAGCCGGGCGTTC 60.449 57.895 14.39 9.11 0.00 3.95
1190 1323 2.960129 GACATAGCCGGGCGTTCG 60.960 66.667 14.39 6.30 0.00 3.95
1191 1324 3.420214 GACATAGCCGGGCGTTCGA 62.420 63.158 14.39 0.00 0.00 3.71
1192 1325 2.029073 CATAGCCGGGCGTTCGAT 59.971 61.111 14.39 0.00 0.00 3.59
1238 1371 0.968405 GCTTGCATTGGGGACTTGAA 59.032 50.000 0.00 0.00 0.00 2.69
1239 1372 1.067354 GCTTGCATTGGGGACTTGAAG 60.067 52.381 0.00 0.00 0.00 3.02
1248 1381 1.002011 GGACTTGAAGGGTCCTGGC 60.002 63.158 5.72 0.00 46.89 4.85
1249 1382 1.761174 GACTTGAAGGGTCCTGGCA 59.239 57.895 0.00 0.00 0.00 4.92
1256 1389 0.921256 AAGGGTCCTGGCAGCCTATT 60.921 55.000 14.15 3.02 43.85 1.73
1257 1390 0.921256 AGGGTCCTGGCAGCCTATTT 60.921 55.000 14.15 0.00 42.76 1.40
1260 1393 1.383523 GTCCTGGCAGCCTATTTGAC 58.616 55.000 14.15 5.52 0.00 3.18
1319 1452 2.034048 CTAGCTCGGAGGAAAGGCCC 62.034 65.000 7.20 0.00 37.37 5.80
1340 1473 3.483869 GGCAGGAAGAGCGGGGAT 61.484 66.667 0.00 0.00 0.00 3.85
1360 1494 3.628646 ATCTCTTGGTGGCGTGGGC 62.629 63.158 0.00 0.00 38.90 5.36
1362 1496 4.641645 TCTTGGTGGCGTGGGCAG 62.642 66.667 0.00 0.00 42.47 4.85
1379 1513 1.003839 AGATCGGCGGTGCAGAAAA 60.004 52.632 7.21 0.00 36.25 2.29
1380 1514 1.021390 AGATCGGCGGTGCAGAAAAG 61.021 55.000 7.21 0.00 36.25 2.27
1381 1515 2.583685 GATCGGCGGTGCAGAAAAGC 62.584 60.000 7.21 0.00 36.25 3.51
1389 1523 1.641140 TGCAGAAAAGCACACGACG 59.359 52.632 0.00 0.00 40.11 5.12
1390 1524 0.808060 TGCAGAAAAGCACACGACGA 60.808 50.000 0.00 0.00 40.11 4.20
1391 1525 0.383124 GCAGAAAAGCACACGACGAC 60.383 55.000 0.00 0.00 0.00 4.34
1392 1526 0.111704 CAGAAAAGCACACGACGACG 60.112 55.000 5.58 5.58 45.75 5.12
1393 1527 1.200839 GAAAAGCACACGACGACGG 59.799 57.895 12.58 3.35 44.46 4.79
1394 1528 1.485032 GAAAAGCACACGACGACGGT 61.485 55.000 12.58 4.00 44.46 4.83
1395 1529 1.485032 AAAAGCACACGACGACGGTC 61.485 55.000 12.58 0.00 44.46 4.79
1411 1545 3.762779 ACGGTCGTAAATAGTAGTGCAC 58.237 45.455 9.40 9.40 0.00 4.57
1417 1551 4.460034 TCGTAAATAGTAGTGCACTGTCCA 59.540 41.667 29.57 11.59 38.24 4.02
1418 1552 4.798907 CGTAAATAGTAGTGCACTGTCCAG 59.201 45.833 29.57 7.69 38.24 3.86
1437 1571 1.355381 AGTGGTGATCTCCAATGGCAA 59.645 47.619 17.83 0.00 39.34 4.52
1438 1572 1.747355 GTGGTGATCTCCAATGGCAAG 59.253 52.381 17.83 0.00 39.34 4.01
1439 1573 1.341285 TGGTGATCTCCAATGGCAAGG 60.341 52.381 14.08 0.00 34.24 3.61
1442 1576 0.552848 GATCTCCAATGGCAAGGGGA 59.447 55.000 13.49 13.49 39.11 4.81
1460 1594 4.265056 GGTGGAGTTGGGCGGTGT 62.265 66.667 0.00 0.00 0.00 4.16
1476 1610 2.952310 CGGTGTCAGACATGATCTAGGA 59.048 50.000 6.51 0.00 37.87 2.94
1483 1617 4.410228 TCAGACATGATCTAGGAAAAGGGG 59.590 45.833 0.00 0.00 35.15 4.79
1508 1642 3.569849 TGGCGGACCAAAGAAGGA 58.430 55.556 0.00 0.00 45.37 3.36
1509 1643 1.072505 TGGCGGACCAAAGAAGGAC 59.927 57.895 0.00 0.00 45.37 3.85
1510 1644 2.033194 GGCGGACCAAAGAAGGACG 61.033 63.158 0.00 0.00 36.30 4.79
1511 1645 1.005394 GCGGACCAAAGAAGGACGA 60.005 57.895 0.00 0.00 35.64 4.20
1513 1647 0.669625 CGGACCAAAGAAGGACGACC 60.670 60.000 0.00 0.00 35.64 4.79
1514 1648 0.395312 GGACCAAAGAAGGACGACCA 59.605 55.000 6.71 0.00 38.94 4.02
1515 1649 1.003233 GGACCAAAGAAGGACGACCAT 59.997 52.381 6.71 0.00 38.94 3.55
1516 1650 2.347731 GACCAAAGAAGGACGACCATC 58.652 52.381 6.71 3.59 38.94 3.51
1518 1652 2.289694 ACCAAAGAAGGACGACCATCTG 60.290 50.000 12.23 3.36 42.44 2.90
1519 1653 2.350522 CAAAGAAGGACGACCATCTGG 58.649 52.381 12.23 4.84 42.44 3.86
1520 1654 0.250513 AAGAAGGACGACCATCTGGC 59.749 55.000 12.23 0.00 42.44 4.85
1529 1665 1.743996 GACCATCTGGCCAAAGAGAC 58.256 55.000 7.01 0.00 39.32 3.36
1545 1681 3.806380 AGAGACATATTTGGCTGCTCTG 58.194 45.455 0.00 0.00 43.05 3.35
1550 1686 1.289160 TATTTGGCTGCTCTGGAGGT 58.711 50.000 0.00 0.00 0.00 3.85
1558 1694 1.876156 CTGCTCTGGAGGTCAAAACAC 59.124 52.381 0.00 0.00 0.00 3.32
1608 1744 0.537188 TACTGCTAGCTCCTTGCCAC 59.463 55.000 17.23 0.00 44.23 5.01
1620 1756 2.026262 TCCTTGCCACATTTCTACTCCC 60.026 50.000 0.00 0.00 0.00 4.30
1666 1805 1.601166 AAAACCGTGTTAGGTGCCTC 58.399 50.000 0.00 0.00 45.21 4.70
1709 1848 7.907389 AGTGGAGTCAAAGACATTAGATAACA 58.093 34.615 0.00 0.00 34.60 2.41
1729 1868 9.167311 GATAACATTTCCATATGTATGTCCCTC 57.833 37.037 12.82 8.41 37.76 4.30
1750 1889 9.907819 TCCCTCTATAAGAATATAAAGGGTGAA 57.092 33.333 12.03 0.00 45.62 3.18
1761 1900 2.278332 AAGGGTGAACTTTGAGGCTC 57.722 50.000 7.79 7.79 0.00 4.70
1764 1903 2.175715 AGGGTGAACTTTGAGGCTCTTT 59.824 45.455 16.72 3.61 0.00 2.52
1766 1905 3.243535 GGGTGAACTTTGAGGCTCTTTTG 60.244 47.826 16.72 6.01 0.00 2.44
1767 1906 3.243535 GGTGAACTTTGAGGCTCTTTTGG 60.244 47.826 16.72 4.29 0.00 3.28
1775 1914 2.958355 TGAGGCTCTTTTGGGACTTTTG 59.042 45.455 16.72 0.00 39.37 2.44
1779 1918 0.387565 TCTTTTGGGACTTTTGCGCC 59.612 50.000 4.18 0.00 0.00 6.53
1785 1924 1.659794 GGACTTTTGCGCCACATGT 59.340 52.632 4.18 0.00 0.00 3.21
1796 1935 2.358898 GCGCCACATGTATTGAAGGAAT 59.641 45.455 0.00 0.00 0.00 3.01
1798 1937 4.677779 GCGCCACATGTATTGAAGGAATTT 60.678 41.667 0.00 0.00 0.00 1.82
1799 1938 5.410067 CGCCACATGTATTGAAGGAATTTT 58.590 37.500 0.00 0.00 0.00 1.82
1811 1950 8.607441 ATTGAAGGAATTTTAAAAAGTGCCTC 57.393 30.769 4.44 2.14 0.00 4.70
1812 1951 7.118496 TGAAGGAATTTTAAAAAGTGCCTCA 57.882 32.000 4.44 4.56 0.00 3.86
1813 1952 7.560368 TGAAGGAATTTTAAAAAGTGCCTCAA 58.440 30.769 4.44 0.00 0.00 3.02
1815 1954 7.786178 AGGAATTTTAAAAAGTGCCTCAAAC 57.214 32.000 4.44 0.00 0.00 2.93
1816 1955 7.334858 AGGAATTTTAAAAAGTGCCTCAAACA 58.665 30.769 4.44 0.00 0.00 2.83
1817 1956 7.279981 AGGAATTTTAAAAAGTGCCTCAAACAC 59.720 33.333 4.44 0.00 38.35 3.32
1818 1957 7.065204 GGAATTTTAAAAAGTGCCTCAAACACA 59.935 33.333 4.44 0.00 40.59 3.72
1820 1959 6.900568 TTTAAAAAGTGCCTCAAACACATG 57.099 33.333 0.00 0.00 40.59 3.21
1821 1960 2.514205 AAAGTGCCTCAAACACATGC 57.486 45.000 0.00 0.00 40.59 4.06
1838 1998 6.815089 ACACATGCCTTTCAAGTTATTTTCA 58.185 32.000 0.00 0.00 0.00 2.69
1841 2001 7.327761 CACATGCCTTTCAAGTTATTTTCAGAG 59.672 37.037 0.00 0.00 0.00 3.35
1866 2026 6.542574 TGCCTGAAATGCACTTTTAAAATG 57.457 33.333 0.09 3.95 30.64 2.32
1868 2028 5.469760 GCCTGAAATGCACTTTTAAAATGGT 59.530 36.000 0.09 0.00 0.00 3.55
1899 4942 8.579850 AATATTTGATTGAGTTAGTTGAGGCA 57.420 30.769 0.00 0.00 0.00 4.75
1902 4945 3.327757 TGATTGAGTTAGTTGAGGCACCT 59.672 43.478 0.00 0.00 0.00 4.00
1931 4986 9.710979 TTTAATTGAGTTAGTTGTCGAAAAGTG 57.289 29.630 5.90 0.00 0.00 3.16
1940 4995 3.410631 TGTCGAAAAGTGCCTGGATTA 57.589 42.857 0.00 0.00 0.00 1.75
1959 5014 7.004086 TGGATTAGGAATTATTTCGAGGCAAT 58.996 34.615 0.00 0.00 32.28 3.56
2009 5064 7.958053 AAACGTACTTATAGCCCATGTAATC 57.042 36.000 0.00 0.00 0.00 1.75
2010 5065 6.034161 ACGTACTTATAGCCCATGTAATCC 57.966 41.667 0.00 0.00 0.00 3.01
2011 5066 5.541101 ACGTACTTATAGCCCATGTAATCCA 59.459 40.000 0.00 0.00 0.00 3.41
2012 5067 6.042322 ACGTACTTATAGCCCATGTAATCCAA 59.958 38.462 0.00 0.00 0.00 3.53
2013 5068 6.932400 CGTACTTATAGCCCATGTAATCCAAA 59.068 38.462 0.00 0.00 0.00 3.28
2014 5069 7.117812 CGTACTTATAGCCCATGTAATCCAAAG 59.882 40.741 0.00 0.00 0.00 2.77
2015 5070 6.911308 ACTTATAGCCCATGTAATCCAAAGT 58.089 36.000 0.00 0.00 0.00 2.66
2016 5071 7.354312 ACTTATAGCCCATGTAATCCAAAGTT 58.646 34.615 0.00 0.00 0.00 2.66
2017 5072 7.502561 ACTTATAGCCCATGTAATCCAAAGTTC 59.497 37.037 0.00 0.00 0.00 3.01
2040 5095 5.773176 TCCAAACAAGGGATTTAAGTCCTTC 59.227 40.000 15.86 1.54 38.70 3.46
2064 5119 4.860802 TTTATCCATTTGGGCAGAGAGA 57.139 40.909 0.00 0.00 36.21 3.10
2065 5120 4.428294 TTATCCATTTGGGCAGAGAGAG 57.572 45.455 0.00 0.00 36.21 3.20
2196 5251 1.921887 TCGGCGATACTTTAACTTGCG 59.078 47.619 4.99 0.00 0.00 4.85
2197 5252 1.921887 CGGCGATACTTTAACTTGCGA 59.078 47.619 0.00 0.00 0.00 5.10
2678 5742 0.039527 GGTGGATGTTTTGGACGCAC 60.040 55.000 0.00 0.00 0.00 5.34
2794 5858 0.745845 ATGGTGCTCAGCGCTTAAGG 60.746 55.000 7.50 0.00 39.23 2.69
3015 6079 2.031870 AGCAGATGTGGTCGCTACATA 58.968 47.619 8.37 0.00 38.78 2.29
3031 6095 1.027357 CATATGTTCTGCTGGGTGGC 58.973 55.000 0.00 0.00 0.00 5.01
3111 6175 3.019564 CTCCCCTGGTGAAAGCTAAATG 58.980 50.000 0.00 0.00 33.76 2.32
3115 6179 2.450476 CTGGTGAAAGCTAAATGGGCT 58.550 47.619 0.00 0.00 42.31 5.19
3132 6196 1.004918 CTCGTCTTGCCCGTTTCCT 60.005 57.895 0.00 0.00 0.00 3.36
3140 6204 1.770294 TGCCCGTTTCCTTCACTTTT 58.230 45.000 0.00 0.00 0.00 2.27
3165 6229 3.081804 GAGGGATTGTCACGTGGAAATT 58.918 45.455 17.00 1.50 0.00 1.82
3177 6241 6.523201 GTCACGTGGAAATTTGCAGTATTAAG 59.477 38.462 17.00 2.06 0.00 1.85
3184 6248 7.065324 TGGAAATTTGCAGTATTAAGACTACCG 59.935 37.037 8.47 0.00 0.00 4.02
3193 6257 1.350071 TAAGACTACCGGGCCACAAA 58.650 50.000 6.32 0.00 0.00 2.83
3201 6265 1.663173 CGGGCCACAAACGGATTTT 59.337 52.632 4.39 0.00 0.00 1.82
3237 6301 0.240945 GGGCAACATGACCTGTTTCG 59.759 55.000 0.00 0.00 45.98 3.46
3322 6386 1.455959 CTGGGACTCCGGGGTCTAG 60.456 68.421 32.76 25.50 35.76 2.43
3342 6406 2.503061 CTGGTCCATCCGCCTCAG 59.497 66.667 0.00 0.00 39.52 3.35
3395 6459 1.202722 TCTCCCGGTCAGAAAACAACC 60.203 52.381 0.00 0.00 0.00 3.77
3409 6473 5.591067 AGAAAACAACCAGGAATTTGACGTA 59.409 36.000 0.00 0.00 0.00 3.57
3444 6508 0.535102 CGGGCTGCCCTTATTCGATT 60.535 55.000 33.39 0.00 42.67 3.34
3464 6528 1.213678 TCAATCAGGGGAGCAATGAGG 59.786 52.381 0.00 0.00 0.00 3.86
3472 6536 1.377536 GGAGCAATGAGGAGCTGTTC 58.622 55.000 0.00 0.00 42.04 3.18
3473 6537 1.339438 GGAGCAATGAGGAGCTGTTCA 60.339 52.381 0.00 0.00 42.04 3.18
3474 6538 2.641305 GAGCAATGAGGAGCTGTTCAT 58.359 47.619 0.00 0.00 42.04 2.57
3475 6539 2.613133 GAGCAATGAGGAGCTGTTCATC 59.387 50.000 9.35 0.00 42.04 2.92
3476 6540 2.239150 AGCAATGAGGAGCTGTTCATCT 59.761 45.455 7.63 2.51 40.13 2.90
3480 6544 1.829849 TGAGGAGCTGTTCATCTGGAG 59.170 52.381 7.63 0.00 37.50 3.86
3591 6658 0.540923 AGGCGTCGTAGAGTAGACCT 59.459 55.000 0.00 0.00 36.95 3.85
3724 6791 1.333931 CAGCTGTGCCATGATGTCATC 59.666 52.381 5.25 5.83 33.61 2.92
3762 6829 2.040144 GCTAGGGTCCATAGAAGGCCA 61.040 57.143 14.82 0.00 0.00 5.36
3821 6888 7.969004 TCTGGGTGTATCCGATATGAATAAAA 58.031 34.615 0.00 0.00 37.00 1.52
3849 6916 4.845580 AGGATGCGAGCTTGCCCG 62.846 66.667 23.34 5.77 0.00 6.13
3879 6946 2.766263 TCACCATGAGGACACCTGATAC 59.234 50.000 0.00 0.00 38.69 2.24
3900 6967 4.112634 ACGACAACACTTCATATGATCCG 58.887 43.478 6.17 1.18 0.00 4.18
3938 7005 1.738830 TTGTGCTACGCGGCTTACC 60.739 57.895 12.47 0.00 0.00 2.85
4012 7079 1.019673 CCATCGTTGCCCTCTTCATG 58.980 55.000 0.00 0.00 0.00 3.07
4029 7096 5.952347 TCTTCATGCTCTACTACTCAAAGGA 59.048 40.000 0.00 0.00 0.00 3.36
4175 7245 4.389992 ACATTCTTACTGATGTTGTGCTCG 59.610 41.667 0.00 0.00 0.00 5.03
4180 7250 0.441533 CTGATGTTGTGCTCGTCTGC 59.558 55.000 0.00 0.00 0.00 4.26
4206 7276 1.130777 ACAGGTTTGCCTTGCCAAAT 58.869 45.000 0.00 0.00 44.18 2.32
4216 7286 1.468908 CCTTGCCAAATTTCGCGCATA 60.469 47.619 8.75 0.00 0.00 3.14
4233 7303 5.802451 CGCGCATATTATGTCTCTGTTAGAT 59.198 40.000 8.75 0.00 36.36 1.98
4317 7387 3.069016 TCAGTCGTTTGCTTCTTCTGGTA 59.931 43.478 0.00 0.00 0.00 3.25
4383 7453 3.496160 GGCTATTCCATGTTGTATCGGGT 60.496 47.826 0.00 0.00 34.01 5.28
4391 7461 5.124776 TCCATGTTGTATCGGGTTTCATTTC 59.875 40.000 0.00 0.00 0.00 2.17
4394 7464 4.216687 TGTTGTATCGGGTTTCATTTCCAC 59.783 41.667 0.00 0.00 0.00 4.02
4397 7467 1.904287 TCGGGTTTCATTTCCACTGG 58.096 50.000 0.00 0.00 0.00 4.00
4406 7476 3.765381 TCATTTCCACTGGATTCTTGCA 58.235 40.909 0.00 0.00 0.00 4.08
4411 7481 4.789012 TCCACTGGATTCTTGCATTTTC 57.211 40.909 0.00 0.00 0.00 2.29
4412 7482 4.410099 TCCACTGGATTCTTGCATTTTCT 58.590 39.130 0.00 0.00 0.00 2.52
4413 7483 4.219070 TCCACTGGATTCTTGCATTTTCTG 59.781 41.667 0.00 0.00 0.00 3.02
4414 7484 4.021719 CCACTGGATTCTTGCATTTTCTGT 60.022 41.667 0.00 0.00 0.00 3.41
4474 7544 7.838884 ACTGTACTCTGTTTTCTATAAGACCC 58.161 38.462 0.00 0.00 0.00 4.46
4703 7773 0.831307 GCAACTCTAACCGATCCCCT 59.169 55.000 0.00 0.00 0.00 4.79
4704 7774 1.209747 GCAACTCTAACCGATCCCCTT 59.790 52.381 0.00 0.00 0.00 3.95
4705 7775 2.433239 GCAACTCTAACCGATCCCCTTA 59.567 50.000 0.00 0.00 0.00 2.69
4706 7776 3.118519 GCAACTCTAACCGATCCCCTTAA 60.119 47.826 0.00 0.00 0.00 1.85
4750 7820 2.642139 CAACCTTTGCCTGCATAGTG 57.358 50.000 8.44 3.64 0.00 2.74
4755 7825 2.679837 CCTTTGCCTGCATAGTGTACAG 59.320 50.000 0.00 0.00 0.00 2.74
4846 7919 0.399091 CCCTCTAGTCTGCATGGGGA 60.399 60.000 0.00 0.00 34.71 4.81
4866 7940 1.796459 AGTAACGAAACGTGGCATGTC 59.204 47.619 13.63 0.30 39.99 3.06
4912 7991 0.600782 CACAAGGCATGGTGTTTGGC 60.601 55.000 0.00 0.00 39.77 4.52
4941 8021 1.000938 ACGTCTGTTGTCTCGTAACCC 60.001 52.381 0.00 0.00 34.78 4.11
4954 8034 1.914764 TAACCCCTTCGGCGAGGTT 60.915 57.895 27.76 27.76 44.61 3.50
5083 8167 5.851177 CCACACTTAAACATAGCAGTTTTCG 59.149 40.000 7.16 3.06 41.58 3.46
5302 10767 2.825836 GCGCCCAACCCTGATCAG 60.826 66.667 16.24 16.24 0.00 2.90
5505 10972 4.124351 TGCTCGTAGTTCCGGCGG 62.124 66.667 22.51 22.51 0.00 6.13
5508 10975 1.515736 CTCGTAGTTCCGGCGGTTC 60.516 63.158 27.32 19.16 0.00 3.62
5510 10977 2.976356 GTAGTTCCGGCGGTTCCT 59.024 61.111 27.32 20.69 0.00 3.36
5538 11008 2.187946 CCTCCACCATGACCTCGC 59.812 66.667 0.00 0.00 0.00 5.03
5567 11040 3.400054 GGCACCTCCTAGGCCGTT 61.400 66.667 2.96 0.00 39.63 4.44
5584 11057 2.297895 TTAGCGGCACCACCTCCAT 61.298 57.895 1.45 0.00 35.61 3.41
5585 11058 2.535485 TTAGCGGCACCACCTCCATG 62.535 60.000 1.45 0.00 35.61 3.66
5586 11059 4.722700 GCGGCACCACCTCCATGT 62.723 66.667 0.00 0.00 35.61 3.21
5587 11060 2.034066 CGGCACCACCTCCATGTT 59.966 61.111 0.00 0.00 35.61 2.71
5588 11061 1.298340 CGGCACCACCTCCATGTTA 59.702 57.895 0.00 0.00 35.61 2.41
5589 11062 0.744414 CGGCACCACCTCCATGTTAG 60.744 60.000 0.00 0.00 35.61 2.34
5590 11063 0.394352 GGCACCACCTCCATGTTAGG 60.394 60.000 9.30 9.30 40.20 2.69
5591 11064 0.618458 GCACCACCTCCATGTTAGGA 59.382 55.000 16.22 0.00 37.57 2.94
5592 11065 1.004277 GCACCACCTCCATGTTAGGAA 59.996 52.381 16.22 0.00 37.20 3.36
5593 11066 2.357154 GCACCACCTCCATGTTAGGAAT 60.357 50.000 16.22 1.15 37.20 3.01
5594 11067 3.545703 CACCACCTCCATGTTAGGAATC 58.454 50.000 16.22 0.00 37.20 2.52
5595 11068 2.170607 ACCACCTCCATGTTAGGAATCG 59.829 50.000 16.22 4.93 37.20 3.34
5596 11069 2.170607 CCACCTCCATGTTAGGAATCGT 59.829 50.000 16.22 0.00 37.20 3.73
5610 11083 8.981647 TGTTAGGAATCGTAGTAGAAAACAAAC 58.018 33.333 0.00 0.00 0.00 2.93
5615 11088 9.505995 GGAATCGTAGTAGAAAACAAACAAAAA 57.494 29.630 0.00 0.00 0.00 1.94
5641 11114 3.408634 CTTACGAACACCCAGGAACAAT 58.591 45.455 0.00 0.00 0.00 2.71
5668 11141 3.718434 AGGTGCATTAGAGGATTGGATCA 59.282 43.478 0.00 0.00 0.00 2.92
5671 11144 4.458295 GTGCATTAGAGGATTGGATCATGG 59.542 45.833 0.00 0.00 0.00 3.66
5674 11147 5.746952 GCATTAGAGGATTGGATCATGGTCA 60.747 44.000 8.54 0.00 0.00 4.02
5703 11177 1.272490 TCCGAGTTGTAGTGGAAGCAG 59.728 52.381 0.00 0.00 0.00 4.24
5706 11180 2.329379 GAGTTGTAGTGGAAGCAGACG 58.671 52.381 0.00 0.00 0.00 4.18
5725 11199 5.525745 CAGACGAGTCAGTGTAGATCATACT 59.474 44.000 5.99 0.00 0.00 2.12
5727 11201 6.600032 AGACGAGTCAGTGTAGATCATACTTT 59.400 38.462 5.99 0.00 0.00 2.66
5737 11211 7.013464 AGTGTAGATCATACTTTAAGTCCCTCG 59.987 40.741 0.00 0.00 0.00 4.63
5738 11212 7.013083 GTGTAGATCATACTTTAAGTCCCTCGA 59.987 40.741 0.00 0.00 0.00 4.04
5739 11213 7.558807 TGTAGATCATACTTTAAGTCCCTCGAA 59.441 37.037 0.00 0.00 0.00 3.71
5740 11214 6.807789 AGATCATACTTTAAGTCCCTCGAAC 58.192 40.000 0.00 0.00 0.00 3.95
5741 11215 4.990257 TCATACTTTAAGTCCCTCGAACG 58.010 43.478 0.00 0.00 0.00 3.95
5742 11216 2.738013 ACTTTAAGTCCCTCGAACGG 57.262 50.000 0.00 0.00 0.00 4.44
5743 11217 1.966354 ACTTTAAGTCCCTCGAACGGT 59.034 47.619 0.00 0.00 0.00 4.83
5744 11218 2.029560 ACTTTAAGTCCCTCGAACGGTC 60.030 50.000 0.00 0.00 0.00 4.79
5765 11239 2.740452 GAACCTACGATGAACGATCCC 58.260 52.381 0.00 0.00 45.77 3.85
5785 11259 0.511653 GCGAACCTTCCTCAAACGAC 59.488 55.000 0.00 0.00 0.00 4.34
5787 11261 1.520494 GAACCTTCCTCAAACGACCC 58.480 55.000 0.00 0.00 0.00 4.46
5788 11262 0.109913 AACCTTCCTCAAACGACCCC 59.890 55.000 0.00 0.00 0.00 4.95
5789 11263 0.767060 ACCTTCCTCAAACGACCCCT 60.767 55.000 0.00 0.00 0.00 4.79
5790 11264 0.036294 CCTTCCTCAAACGACCCCTC 60.036 60.000 0.00 0.00 0.00 4.30
5796 11270 1.542915 CTCAAACGACCCCTCGAACTA 59.457 52.381 0.00 0.00 43.06 2.24
5804 11278 1.180029 CCCCTCGAACTAAAGACCGA 58.820 55.000 0.00 0.00 0.00 4.69
5831 11305 1.403323 GCCTCTCTACAATTGGCAAGC 59.597 52.381 10.83 0.00 42.79 4.01
5936 11410 4.012374 CAAGGCCAAGCAGAAGAAATAGA 58.988 43.478 5.01 0.00 0.00 1.98
5991 11465 3.865164 CCAAGACAAGCCAAAGAAACAAC 59.135 43.478 0.00 0.00 0.00 3.32
6068 11543 1.752198 CACCCCGAAGACAAGTCCA 59.248 57.895 0.00 0.00 0.00 4.02
6147 11623 1.597854 CGCTCCACCTCACAGCAAA 60.598 57.895 0.00 0.00 32.27 3.68
6200 11676 2.416547 CCAAGTGATTAAGTGGCTGTCG 59.583 50.000 0.00 0.00 0.00 4.35
6249 11726 4.324254 GGAAGATCACCCCTAAATGACACA 60.324 45.833 0.00 0.00 0.00 3.72
6340 11817 1.577468 CCACAACGTGACACTAAGCA 58.423 50.000 3.68 0.00 35.23 3.91
6373 11850 0.250467 GCCTTGTCCTGTCTGCAGAA 60.250 55.000 20.19 8.16 45.28 3.02
6389 11866 6.931281 GTCTGCAGAATTAGGTATGATAGCAA 59.069 38.462 20.19 0.00 0.00 3.91
6495 11972 7.979786 TTAGAAAGGATTCAGACCTCTGTAT 57.020 36.000 2.25 0.00 44.12 2.29
6507 11984 3.474600 ACCTCTGTATACTCATACGCGT 58.525 45.455 19.17 19.17 40.04 6.01
6517 11994 0.172578 TCATACGCGTGTAGCTGCTT 59.827 50.000 24.59 0.00 45.59 3.91
6529 12006 1.043022 AGCTGCTTTTGTTCCAAGGG 58.957 50.000 0.00 0.00 0.00 3.95
6532 12009 1.615392 CTGCTTTTGTTCCAAGGGGAG 59.385 52.381 0.00 0.00 46.01 4.30
6545 12023 2.752807 GGGGAGCTTGCCGGGATTA 61.753 63.158 2.18 0.00 0.00 1.75
6605 12083 4.010349 CCAAAGCAGGAGTAGGGTTTTAG 58.990 47.826 0.00 0.00 32.89 1.85
6610 12088 2.576648 CAGGAGTAGGGTTTTAGGCCTT 59.423 50.000 12.58 0.00 0.00 4.35
6638 12116 3.421919 CCCGAACCTGGGTAAAAACTA 57.578 47.619 0.00 0.00 44.76 2.24
6639 12117 3.753815 CCCGAACCTGGGTAAAAACTAA 58.246 45.455 0.00 0.00 44.76 2.24
6640 12118 4.143543 CCCGAACCTGGGTAAAAACTAAA 58.856 43.478 0.00 0.00 44.76 1.85
6641 12119 4.216902 CCCGAACCTGGGTAAAAACTAAAG 59.783 45.833 0.00 0.00 44.76 1.85
6642 12120 4.216902 CCGAACCTGGGTAAAAACTAAAGG 59.783 45.833 0.00 0.00 0.00 3.11
6643 12121 5.065235 CGAACCTGGGTAAAAACTAAAGGA 58.935 41.667 0.00 0.00 0.00 3.36
6644 12122 5.532032 CGAACCTGGGTAAAAACTAAAGGAA 59.468 40.000 0.00 0.00 0.00 3.36
6645 12123 6.039605 CGAACCTGGGTAAAAACTAAAGGAAA 59.960 38.462 0.00 0.00 0.00 3.13
6646 12124 7.255695 CGAACCTGGGTAAAAACTAAAGGAAAT 60.256 37.037 0.00 0.00 0.00 2.17
6647 12125 9.081204 GAACCTGGGTAAAAACTAAAGGAAATA 57.919 33.333 0.00 0.00 0.00 1.40
6648 12126 9.610104 AACCTGGGTAAAAACTAAAGGAAATAT 57.390 29.630 0.00 0.00 0.00 1.28
6649 12127 9.031537 ACCTGGGTAAAAACTAAAGGAAATATG 57.968 33.333 0.00 0.00 0.00 1.78
6650 12128 7.979537 CCTGGGTAAAAACTAAAGGAAATATGC 59.020 37.037 0.00 0.00 0.00 3.14
6651 12129 7.842982 TGGGTAAAAACTAAAGGAAATATGCC 58.157 34.615 0.00 0.00 0.00 4.40
6652 12130 7.093245 TGGGTAAAAACTAAAGGAAATATGCCC 60.093 37.037 0.00 0.00 0.00 5.36
6653 12131 7.125204 GGGTAAAAACTAAAGGAAATATGCCCT 59.875 37.037 0.00 0.00 0.00 5.19
6654 12132 9.192642 GGTAAAAACTAAAGGAAATATGCCCTA 57.807 33.333 0.00 0.00 31.36 3.53
6657 12135 8.753497 AAAACTAAAGGAAATATGCCCTAGAG 57.247 34.615 0.00 1.58 31.36 2.43
6658 12136 6.441088 ACTAAAGGAAATATGCCCTAGAGG 57.559 41.667 0.00 0.00 39.47 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.595819 TTGAATTTTGGTCAAACTATGGTCT 57.404 32.000 0.00 0.00 32.13 3.85
62 64 8.324163 ACATCTGGTCAAACTACTTATTCAAC 57.676 34.615 0.00 0.00 0.00 3.18
154 217 6.579292 CGTCATAGGTCGTTTTGCAAATTTTA 59.421 34.615 13.65 0.00 0.00 1.52
196 259 5.886715 TCAAAATGTTCAGCACGAAAATG 57.113 34.783 0.00 0.00 31.47 2.32
234 302 8.974408 CCATATCTTTTGTATACGATGTCGAAA 58.026 33.333 9.67 0.00 43.02 3.46
431 527 3.769739 AAGGGCAATTTTCAAACTCCC 57.230 42.857 0.00 0.00 0.00 4.30
432 528 5.853936 ACTAAAGGGCAATTTTCAAACTCC 58.146 37.500 0.00 0.00 0.00 3.85
474 577 1.134580 GGGTCTAACCTTTAGTCCCGC 60.135 57.143 11.09 0.00 38.64 6.13
495 599 5.168647 TGTATCACAAACCGGGACTAAAT 57.831 39.130 6.32 0.00 0.00 1.40
566 687 0.179045 CCATGAGCCCCTTTAGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
593 714 0.396811 GTGGCAGACTGGTGTTAGGT 59.603 55.000 4.26 0.00 0.00 3.08
605 726 0.770557 ACTAAAGGGGTGGTGGCAGA 60.771 55.000 0.00 0.00 0.00 4.26
659 780 7.156673 GCTATACATTAGTCCCGGTTCATTTA 58.843 38.462 0.00 0.00 0.00 1.40
706 827 4.637483 AAATGAATCGGCACTAATGTGG 57.363 40.909 0.00 0.00 43.97 4.17
720 841 3.732048 AGTCCCGGTTGGTAAATGAAT 57.268 42.857 0.00 0.00 34.77 2.57
730 851 1.207089 TCAGCTCATTAGTCCCGGTTG 59.793 52.381 0.00 0.00 0.00 3.77
777 898 4.613448 CGGAATAAATCTCGATCGACTCAC 59.387 45.833 15.15 0.83 0.00 3.51
778 899 4.320275 CCGGAATAAATCTCGATCGACTCA 60.320 45.833 15.15 1.04 0.00 3.41
779 900 4.159857 CCGGAATAAATCTCGATCGACTC 58.840 47.826 15.15 2.45 0.00 3.36
781 902 3.243336 CCCGGAATAAATCTCGATCGAC 58.757 50.000 15.15 1.28 0.00 4.20
782 903 2.889045 ACCCGGAATAAATCTCGATCGA 59.111 45.455 18.32 18.32 0.00 3.59
783 904 3.299340 ACCCGGAATAAATCTCGATCG 57.701 47.619 9.36 9.36 0.00 3.69
784 905 5.130292 TGTACCCGGAATAAATCTCGATC 57.870 43.478 0.73 0.00 0.00 3.69
798 919 1.056660 ATTAGAGCCCATGTACCCGG 58.943 55.000 0.00 0.00 0.00 5.73
799 920 2.028385 GGTATTAGAGCCCATGTACCCG 60.028 54.545 0.00 0.00 0.00 5.28
802 923 8.863872 AATAAATGGTATTAGAGCCCATGTAC 57.136 34.615 0.00 0.00 38.93 2.90
813 934 8.405531 CCGGGATTGCATAATAAATGGTATTAG 58.594 37.037 0.00 0.00 0.00 1.73
814 935 7.340743 CCCGGGATTGCATAATAAATGGTATTA 59.659 37.037 18.48 0.00 0.00 0.98
815 936 6.154363 CCCGGGATTGCATAATAAATGGTATT 59.846 38.462 18.48 0.00 0.00 1.89
819 940 3.831911 ACCCGGGATTGCATAATAAATGG 59.168 43.478 32.02 0.00 0.00 3.16
822 943 4.141287 CAGACCCGGGATTGCATAATAAA 58.859 43.478 32.02 0.00 0.00 1.40
825 946 1.819305 GCAGACCCGGGATTGCATAAT 60.819 52.381 33.80 11.13 36.59 1.28
843 964 4.335315 GGATCGAAAATGATAGTGTTGGCA 59.665 41.667 0.00 0.00 0.00 4.92
846 967 6.421377 TGTGGATCGAAAATGATAGTGTTG 57.579 37.500 0.00 0.00 0.00 3.33
852 973 6.508777 TGACGTATGTGGATCGAAAATGATA 58.491 36.000 0.00 0.00 0.00 2.15
853 974 5.356426 TGACGTATGTGGATCGAAAATGAT 58.644 37.500 0.00 0.00 0.00 2.45
854 975 4.749976 TGACGTATGTGGATCGAAAATGA 58.250 39.130 0.00 0.00 0.00 2.57
855 976 5.463499 TTGACGTATGTGGATCGAAAATG 57.537 39.130 0.00 0.00 0.00 2.32
856 977 5.642063 AGTTTGACGTATGTGGATCGAAAAT 59.358 36.000 0.00 0.00 0.00 1.82
860 982 3.861276 AGTTTGACGTATGTGGATCGA 57.139 42.857 0.00 0.00 0.00 3.59
864 986 2.093869 GGCCTAGTTTGACGTATGTGGA 60.094 50.000 0.00 0.00 0.00 4.02
876 998 2.502130 GCTCTCTAGTTGGGCCTAGTTT 59.498 50.000 4.53 0.00 36.59 2.66
880 1002 2.111384 CTTGCTCTCTAGTTGGGCCTA 58.889 52.381 4.53 0.00 0.00 3.93
885 1007 0.460987 CGGCCTTGCTCTCTAGTTGG 60.461 60.000 0.00 0.00 0.00 3.77
890 1012 2.139323 TAAGTCGGCCTTGCTCTCTA 57.861 50.000 0.00 0.00 34.46 2.43
901 1023 1.069935 GGGCCTCTCATAAGTCGGC 59.930 63.158 0.84 0.00 38.56 5.54
903 1025 0.390860 CCAGGGCCTCTCATAAGTCG 59.609 60.000 0.95 0.00 0.00 4.18
921 1047 0.904865 CTTTTTGGGGAAGAGGGCCC 60.905 60.000 16.46 16.46 45.25 5.80
922 1048 0.114364 TCTTTTTGGGGAAGAGGGCC 59.886 55.000 0.00 0.00 0.00 5.80
923 1049 1.203063 AGTCTTTTTGGGGAAGAGGGC 60.203 52.381 0.00 0.00 34.05 5.19
927 1053 2.986728 AGGCTAGTCTTTTTGGGGAAGA 59.013 45.455 0.00 0.00 0.00 2.87
928 1054 3.084786 CAGGCTAGTCTTTTTGGGGAAG 58.915 50.000 0.00 0.00 0.00 3.46
930 1056 2.344592 TCAGGCTAGTCTTTTTGGGGA 58.655 47.619 0.00 0.00 0.00 4.81
933 1059 6.317391 CCTTTCTATCAGGCTAGTCTTTTTGG 59.683 42.308 0.00 0.00 0.00 3.28
936 1062 5.726793 TCCCTTTCTATCAGGCTAGTCTTTT 59.273 40.000 0.00 0.00 0.00 2.27
953 1082 2.046217 GGTGCGGGAGTCCCTTTC 60.046 66.667 26.04 14.72 42.67 2.62
954 1083 3.647771 GGGTGCGGGAGTCCCTTT 61.648 66.667 26.04 0.00 42.67 3.11
961 1090 2.224209 ACGATTTATAAGGGTGCGGGAG 60.224 50.000 0.00 0.00 0.00 4.30
985 1114 1.452108 GATTGTGGGAGAAGGCGGG 60.452 63.158 0.00 0.00 0.00 6.13
987 1116 0.179073 ATCGATTGTGGGAGAAGGCG 60.179 55.000 0.00 0.00 0.00 5.52
989 1118 2.698855 ACATCGATTGTGGGAGAAGG 57.301 50.000 0.00 0.00 37.11 3.46
1002 1131 2.369203 TGTTGGTTTAGTCCCACATCGA 59.631 45.455 0.00 0.00 29.93 3.59
1003 1132 2.482721 GTGTTGGTTTAGTCCCACATCG 59.517 50.000 0.00 0.00 35.96 3.84
1022 1152 1.856265 GCCTCCCAAACTTGCGAGTG 61.856 60.000 7.56 0.00 35.91 3.51
1027 1157 4.056125 GCCGCCTCCCAAACTTGC 62.056 66.667 0.00 0.00 0.00 4.01
1053 1183 2.935849 CCAACTTTTTGCCACCACTTTC 59.064 45.455 0.00 0.00 0.00 2.62
1060 1190 2.682352 ACATTTGCCAACTTTTTGCCAC 59.318 40.909 0.00 0.00 0.00 5.01
1064 1194 3.487209 GCACCACATTTGCCAACTTTTTG 60.487 43.478 0.00 0.00 33.58 2.44
1090 1220 0.030908 CCCTCTAGCGATCGACAACC 59.969 60.000 21.57 0.00 0.00 3.77
1093 1223 1.152943 AGCCCTCTAGCGATCGACA 60.153 57.895 21.57 3.89 38.01 4.35
1097 1227 1.873165 CGAGAGCCCTCTAGCGATC 59.127 63.158 0.00 0.00 40.61 3.69
1138 1271 1.275421 AAGGAGGGCTACTTCCAGGC 61.275 60.000 0.00 0.00 40.27 4.85
1145 1278 2.835156 GTGAAGAAGAAGGAGGGCTACT 59.165 50.000 0.00 0.00 0.00 2.57
1160 1293 3.367395 CGGCTATGTCAACTGAGTGAAGA 60.367 47.826 0.00 0.00 0.00 2.87
1184 1317 4.166011 GCACCAGGCATCGAACGC 62.166 66.667 1.70 1.70 43.97 4.84
1185 1318 3.853330 CGCACCAGGCATCGAACG 61.853 66.667 0.00 0.00 45.17 3.95
1187 1320 4.776322 CCCGCACCAGGCATCGAA 62.776 66.667 0.00 0.00 45.17 3.71
1214 1347 1.304381 TCCCCAATGCAAGCACCTC 60.304 57.895 0.00 0.00 0.00 3.85
1238 1371 0.921256 AAATAGGCTGCCAGGACCCT 60.921 55.000 22.65 0.00 0.00 4.34
1239 1372 0.753111 CAAATAGGCTGCCAGGACCC 60.753 60.000 22.65 0.00 0.00 4.46
1256 1389 0.178992 CTTTGGTCTGGGCCAGTCAA 60.179 55.000 31.60 29.34 40.01 3.18
1257 1390 1.455849 CTTTGGTCTGGGCCAGTCA 59.544 57.895 31.60 26.01 40.01 3.41
1260 1393 2.036256 CCCTTTGGTCTGGGCCAG 59.964 66.667 28.01 28.01 40.01 4.85
1265 1398 1.315257 CGCCATTCCCTTTGGTCTGG 61.315 60.000 0.00 0.00 37.35 3.86
1300 1433 1.443828 GGCCTTTCCTCCGAGCTAG 59.556 63.158 0.00 0.00 0.00 3.42
1323 1456 3.483869 ATCCCCGCTCTTCCTGCC 61.484 66.667 0.00 0.00 0.00 4.85
1334 1467 0.107456 CCACCAAGAGATCATCCCCG 59.893 60.000 0.00 0.00 0.00 5.73
1340 1473 1.296392 CCACGCCACCAAGAGATCA 59.704 57.895 0.00 0.00 0.00 2.92
1360 1494 1.298157 TTTTCTGCACCGCCGATCTG 61.298 55.000 0.00 0.00 0.00 2.90
1362 1496 1.425428 CTTTTCTGCACCGCCGATC 59.575 57.895 0.00 0.00 0.00 3.69
1374 1508 1.213094 CCGTCGTCGTGTGCTTTTCT 61.213 55.000 0.71 0.00 35.01 2.52
1388 1522 3.031812 GCACTACTATTTACGACCGTCG 58.968 50.000 19.24 19.24 46.93 5.12
1389 1523 3.788163 GTGCACTACTATTTACGACCGTC 59.212 47.826 10.32 0.00 0.00 4.79
1390 1524 3.441572 AGTGCACTACTATTTACGACCGT 59.558 43.478 20.16 0.00 38.04 4.83
1391 1525 3.789756 CAGTGCACTACTATTTACGACCG 59.210 47.826 21.20 0.00 37.60 4.79
1392 1526 4.741342 ACAGTGCACTACTATTTACGACC 58.259 43.478 21.20 0.00 37.60 4.79
1393 1527 4.797349 GGACAGTGCACTACTATTTACGAC 59.203 45.833 21.20 4.05 37.60 4.34
1394 1528 4.460034 TGGACAGTGCACTACTATTTACGA 59.540 41.667 21.20 0.00 37.60 3.43
1395 1529 4.740268 TGGACAGTGCACTACTATTTACG 58.260 43.478 21.20 6.25 37.60 3.18
1396 1530 5.721232 ACTGGACAGTGCACTACTATTTAC 58.279 41.667 21.20 4.91 40.75 2.01
1397 1531 5.995565 ACTGGACAGTGCACTACTATTTA 57.004 39.130 21.20 1.75 40.75 1.40
1398 1532 4.891992 ACTGGACAGTGCACTACTATTT 57.108 40.909 21.20 0.00 40.75 1.40
1411 1545 1.269958 TGGAGATCACCACTGGACAG 58.730 55.000 7.91 0.00 34.77 3.51
1417 1551 0.994247 TGCCATTGGAGATCACCACT 59.006 50.000 11.83 3.60 39.85 4.00
1418 1552 1.747355 CTTGCCATTGGAGATCACCAC 59.253 52.381 11.83 1.03 39.85 4.16
1421 1555 1.396653 CCCTTGCCATTGGAGATCAC 58.603 55.000 6.95 0.00 0.00 3.06
1425 1559 1.574526 CCTCCCCTTGCCATTGGAGA 61.575 60.000 6.95 0.00 45.93 3.71
1437 1571 2.204151 CCCAACTCCACCTCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
1438 1572 4.048470 GCCCAACTCCACCTCCCC 62.048 72.222 0.00 0.00 0.00 4.81
1439 1573 4.410400 CGCCCAACTCCACCTCCC 62.410 72.222 0.00 0.00 0.00 4.30
1442 1576 3.953775 CACCGCCCAACTCCACCT 61.954 66.667 0.00 0.00 0.00 4.00
1460 1594 4.410228 CCCCTTTTCCTAGATCATGTCTGA 59.590 45.833 0.00 0.00 37.83 3.27
1476 1610 4.231140 CCAATGTGGCCCCCTTTT 57.769 55.556 0.00 0.00 0.00 2.27
1494 1628 0.669625 GGTCGTCCTTCTTTGGTCCG 60.670 60.000 0.00 0.00 0.00 4.79
1497 1631 1.978580 AGATGGTCGTCCTTCTTTGGT 59.021 47.619 10.61 0.00 43.00 3.67
1506 1640 1.002624 TTTGGCCAGATGGTCGTCC 60.003 57.895 5.11 0.00 44.44 4.79
1507 1641 0.036388 TCTTTGGCCAGATGGTCGTC 60.036 55.000 5.11 0.00 44.44 4.20
1508 1642 0.036010 CTCTTTGGCCAGATGGTCGT 60.036 55.000 5.11 0.00 44.44 4.34
1509 1643 0.250234 TCTCTTTGGCCAGATGGTCG 59.750 55.000 5.11 0.00 44.44 4.79
1510 1644 1.003580 TGTCTCTTTGGCCAGATGGTC 59.996 52.381 5.11 0.00 41.09 4.02
1511 1645 1.067295 TGTCTCTTTGGCCAGATGGT 58.933 50.000 5.11 0.00 37.57 3.55
1513 1647 5.221185 CCAAATATGTCTCTTTGGCCAGATG 60.221 44.000 5.11 0.00 43.44 2.90
1514 1648 4.891756 CCAAATATGTCTCTTTGGCCAGAT 59.108 41.667 5.11 0.00 43.44 2.90
1515 1649 4.272489 CCAAATATGTCTCTTTGGCCAGA 58.728 43.478 5.11 0.00 43.44 3.86
1516 1650 4.644103 CCAAATATGTCTCTTTGGCCAG 57.356 45.455 5.11 0.00 43.44 4.85
1529 1665 2.228059 CCTCCAGAGCAGCCAAATATG 58.772 52.381 0.00 0.00 0.00 1.78
1545 1681 2.341452 GGGCAGTGTTTTGACCTCC 58.659 57.895 0.00 0.00 43.36 4.30
1550 1686 4.640771 ATTCTAGAGGGCAGTGTTTTGA 57.359 40.909 0.00 0.00 0.00 2.69
1558 1694 3.845781 TTTGGCTATTCTAGAGGGCAG 57.154 47.619 14.58 4.12 35.77 4.85
1608 1744 6.723977 AGAGCTTATCTAGGGGAGTAGAAATG 59.276 42.308 0.00 0.00 36.10 2.32
1652 1791 2.048597 TGCGAGGCACCTAACACG 60.049 61.111 0.00 0.00 31.71 4.49
1679 1818 3.475566 TGTCTTTGACTCCACTCCTTG 57.524 47.619 0.00 0.00 33.15 3.61
1750 1889 2.175715 AGTCCCAAAAGAGCCTCAAAGT 59.824 45.455 0.00 0.00 0.00 2.66
1761 1900 0.103937 TGGCGCAAAAGTCCCAAAAG 59.896 50.000 10.83 0.00 0.00 2.27
1764 1903 1.112315 ATGTGGCGCAAAAGTCCCAA 61.112 50.000 10.83 0.00 0.00 4.12
1766 1905 1.080569 CATGTGGCGCAAAAGTCCC 60.081 57.895 10.83 0.00 0.00 4.46
1767 1906 0.878416 TACATGTGGCGCAAAAGTCC 59.122 50.000 10.83 0.00 0.00 3.85
1775 1914 1.378531 TCCTTCAATACATGTGGCGC 58.621 50.000 9.11 0.00 0.00 6.53
1785 1924 9.705290 GAGGCACTTTTTAAAATTCCTTCAATA 57.295 29.630 0.55 0.00 41.55 1.90
1796 1935 6.183360 GCATGTGTTTGAGGCACTTTTTAAAA 60.183 34.615 0.00 0.00 41.55 1.52
1798 1937 4.808364 GCATGTGTTTGAGGCACTTTTTAA 59.192 37.500 0.00 0.00 41.55 1.52
1799 1938 4.367450 GCATGTGTTTGAGGCACTTTTTA 58.633 39.130 0.00 0.00 41.55 1.52
1811 1950 7.481275 AAATAACTTGAAAGGCATGTGTTTG 57.519 32.000 0.00 0.00 35.32 2.93
1812 1951 7.768120 TGAAAATAACTTGAAAGGCATGTGTTT 59.232 29.630 0.00 0.00 35.32 2.83
1813 1952 7.271511 TGAAAATAACTTGAAAGGCATGTGTT 58.728 30.769 0.00 0.00 35.32 3.32
1815 1954 7.147312 TCTGAAAATAACTTGAAAGGCATGTG 58.853 34.615 0.00 0.00 35.32 3.21
1816 1955 7.288810 TCTGAAAATAACTTGAAAGGCATGT 57.711 32.000 0.00 0.00 36.53 3.21
1817 1956 6.810182 CCTCTGAAAATAACTTGAAAGGCATG 59.190 38.462 0.00 0.00 0.00 4.06
1818 1957 6.494835 ACCTCTGAAAATAACTTGAAAGGCAT 59.505 34.615 0.00 0.00 0.00 4.40
1820 1959 6.152379 CACCTCTGAAAATAACTTGAAAGGC 58.848 40.000 0.00 0.00 0.00 4.35
1821 1960 6.152379 GCACCTCTGAAAATAACTTGAAAGG 58.848 40.000 0.00 0.00 0.00 3.11
1911 4966 3.558418 GGCACTTTTCGACAACTAACTCA 59.442 43.478 0.00 0.00 0.00 3.41
1922 4977 2.569853 TCCTAATCCAGGCACTTTTCGA 59.430 45.455 0.00 0.00 45.10 3.71
1924 4979 5.921962 AATTCCTAATCCAGGCACTTTTC 57.078 39.130 0.00 0.00 45.10 2.29
1925 4980 7.978099 AATAATTCCTAATCCAGGCACTTTT 57.022 32.000 0.00 0.00 45.10 2.27
1931 4986 5.412904 CCTCGAAATAATTCCTAATCCAGGC 59.587 44.000 0.00 0.00 45.10 4.85
1940 4995 8.641498 ATGATTATTGCCTCGAAATAATTCCT 57.359 30.769 12.54 2.28 39.28 3.36
1950 5005 5.122519 TGCAACTTATGATTATTGCCTCGA 58.877 37.500 5.43 0.00 45.45 4.04
1952 5007 6.742109 ACATGCAACTTATGATTATTGCCTC 58.258 36.000 5.43 0.00 45.45 4.70
2009 5064 4.687901 AATCCCTTGTTTGGAACTTTGG 57.312 40.909 0.00 0.00 35.03 3.28
2010 5065 7.272244 ACTTAAATCCCTTGTTTGGAACTTTG 58.728 34.615 0.00 0.00 35.03 2.77
2011 5066 7.418597 GGACTTAAATCCCTTGTTTGGAACTTT 60.419 37.037 0.00 0.00 35.03 2.66
2012 5067 6.041637 GGACTTAAATCCCTTGTTTGGAACTT 59.958 38.462 0.00 0.00 35.03 2.66
2013 5068 5.538813 GGACTTAAATCCCTTGTTTGGAACT 59.461 40.000 0.00 0.00 35.03 3.01
2014 5069 5.538813 AGGACTTAAATCCCTTGTTTGGAAC 59.461 40.000 0.00 0.00 39.91 3.62
2015 5070 5.711698 AGGACTTAAATCCCTTGTTTGGAA 58.288 37.500 0.00 0.00 39.91 3.53
2016 5071 5.333566 AGGACTTAAATCCCTTGTTTGGA 57.666 39.130 0.00 0.00 39.91 3.53
2017 5072 5.775195 AGAAGGACTTAAATCCCTTGTTTGG 59.225 40.000 0.00 0.00 40.14 3.28
2040 5095 5.653769 TCTCTCTGCCCAAATGGATAAAAAG 59.346 40.000 0.00 0.00 37.39 2.27
2064 5119 0.474184 CTCCAATCCCGCCATTACCT 59.526 55.000 0.00 0.00 0.00 3.08
2065 5120 1.172812 GCTCCAATCCCGCCATTACC 61.173 60.000 0.00 0.00 0.00 2.85
2196 5251 3.508762 CAAATGATGGCTTTCAGCACTC 58.491 45.455 0.00 0.00 45.18 3.51
2197 5252 2.232941 CCAAATGATGGCTTTCAGCACT 59.767 45.455 0.00 0.00 45.18 4.40
2489 5544 3.378112 CCAACCACAAATATGACGATGCT 59.622 43.478 0.00 0.00 0.00 3.79
2623 5678 1.920574 CTCGTGGCAGAGTTAACATCG 59.079 52.381 8.61 2.25 33.75 3.84
2678 5742 3.642778 CTACACGGTGCCTCGGTGG 62.643 68.421 8.30 0.00 46.85 4.61
2685 5749 0.882927 TTGCAGTTCTACACGGTGCC 60.883 55.000 8.30 0.00 32.99 5.01
2691 5755 6.428385 AAGCTATCAATTGCAGTTCTACAC 57.572 37.500 0.00 0.00 0.00 2.90
2692 5756 7.064609 GTGTAAGCTATCAATTGCAGTTCTACA 59.935 37.037 0.00 7.02 0.00 2.74
2794 5858 3.181450 CCACCCTGAACATATCTTCTCCC 60.181 52.174 0.00 0.00 0.00 4.30
2900 5964 2.841988 GGCCGGCAGAGAGAGGAT 60.842 66.667 30.85 0.00 0.00 3.24
3007 6071 2.138320 CCCAGCAGAACATATGTAGCG 58.862 52.381 9.21 9.79 0.00 4.26
3015 6079 2.360350 CGCCACCCAGCAGAACAT 60.360 61.111 0.00 0.00 0.00 2.71
3049 6113 3.376078 GCCCTCACCACCGACGTA 61.376 66.667 0.00 0.00 0.00 3.57
3115 6179 0.601841 GAAGGAAACGGGCAAGACGA 60.602 55.000 0.00 0.00 34.93 4.20
3132 6196 5.768164 GTGACAATCCCTCCTAAAAAGTGAA 59.232 40.000 0.00 0.00 0.00 3.18
3140 6204 1.553248 CCACGTGACAATCCCTCCTAA 59.447 52.381 19.30 0.00 0.00 2.69
3165 6229 3.431207 GCCCGGTAGTCTTAATACTGCAA 60.431 47.826 10.45 0.00 34.15 4.08
3177 6241 2.030958 CGTTTGTGGCCCGGTAGTC 61.031 63.158 0.00 0.00 0.00 2.59
3184 6248 0.676736 TCAAAATCCGTTTGTGGCCC 59.323 50.000 0.00 0.00 45.83 5.80
3193 6257 3.023832 GGATCCCAACATCAAAATCCGT 58.976 45.455 0.00 0.00 0.00 4.69
3201 6265 0.557238 CCCCATGGATCCCAACATCA 59.443 55.000 15.22 0.00 36.95 3.07
3322 6386 3.083997 AGGCGGATGGACCAGGAC 61.084 66.667 0.00 0.00 38.90 3.85
3342 6406 2.290577 ACTGCCTGAATGAGTTCTTCCC 60.291 50.000 0.00 0.00 35.33 3.97
3395 6459 6.363473 GTGAGTTCTTTACGTCAAATTCCTG 58.637 40.000 0.00 0.00 0.00 3.86
3409 6473 2.032071 CGGCCCCGTGAGTTCTTT 59.968 61.111 0.00 0.00 34.35 2.52
3431 6495 3.503748 CCCTGATTGAATCGAATAAGGGC 59.496 47.826 12.82 0.00 44.29 5.19
3444 6508 1.213678 CCTCATTGCTCCCCTGATTGA 59.786 52.381 0.00 0.00 0.00 2.57
3464 6528 2.344950 CACACTCCAGATGAACAGCTC 58.655 52.381 0.00 0.00 0.00 4.09
3472 6536 1.625315 TCCAACTCCACACTCCAGATG 59.375 52.381 0.00 0.00 0.00 2.90
3473 6537 2.030027 TCCAACTCCACACTCCAGAT 57.970 50.000 0.00 0.00 0.00 2.90
3474 6538 1.902508 GATCCAACTCCACACTCCAGA 59.097 52.381 0.00 0.00 0.00 3.86
3475 6539 1.905215 AGATCCAACTCCACACTCCAG 59.095 52.381 0.00 0.00 0.00 3.86
3476 6540 1.625315 CAGATCCAACTCCACACTCCA 59.375 52.381 0.00 0.00 0.00 3.86
3480 6544 2.237143 TCATCCAGATCCAACTCCACAC 59.763 50.000 0.00 0.00 0.00 3.82
3591 6658 5.485353 ACATCAAGATCTGTAACCTTGGAGA 59.515 40.000 0.00 0.00 38.19 3.71
3724 6791 1.750930 CTGATCCTCGGATGGGGTG 59.249 63.158 2.58 0.00 34.60 4.61
3762 6829 2.048023 CCATTCCATGCACGCACCT 61.048 57.895 0.00 0.00 0.00 4.00
3821 6888 3.003480 GCTCGCATCCTTTTTCTAGTGT 58.997 45.455 0.00 0.00 0.00 3.55
3829 6896 1.598701 GGGCAAGCTCGCATCCTTTT 61.599 55.000 0.00 0.00 0.00 2.27
3849 6916 0.743701 CCTCATGGTGAGCAGCTGTC 60.744 60.000 16.64 11.99 42.98 3.51
3879 6946 3.060272 GCGGATCATATGAAGTGTTGTCG 60.060 47.826 9.99 6.32 0.00 4.35
3900 6967 1.091771 CATCTCCACCCACACATCGC 61.092 60.000 0.00 0.00 0.00 4.58
3938 7005 0.516877 TGGAAATTCTCGTTGCAGCG 59.483 50.000 17.58 17.58 0.00 5.18
3940 7007 2.523015 GCATGGAAATTCTCGTTGCAG 58.477 47.619 0.00 0.00 34.42 4.41
4029 7096 6.430451 GCAGCGCTTGTGTTAATAATAAGAT 58.570 36.000 7.50 0.00 0.00 2.40
4154 7224 4.569943 ACGAGCACAACATCAGTAAGAAT 58.430 39.130 0.00 0.00 0.00 2.40
4175 7245 2.287608 GCAAACCTGTTAGTTGGCAGAC 60.288 50.000 0.00 0.00 44.64 3.51
4206 7276 4.368315 ACAGAGACATAATATGCGCGAAA 58.632 39.130 12.10 0.00 0.00 3.46
4383 7453 4.588106 TGCAAGAATCCAGTGGAAATGAAA 59.412 37.500 17.71 2.88 34.34 2.69
4391 7461 4.021719 ACAGAAAATGCAAGAATCCAGTGG 60.022 41.667 1.40 1.40 0.00 4.00
4394 7464 4.491676 CCACAGAAAATGCAAGAATCCAG 58.508 43.478 0.00 0.00 0.00 3.86
4397 7467 3.256558 GGCCACAGAAAATGCAAGAATC 58.743 45.455 0.00 0.00 0.00 2.52
4406 7476 3.320541 TCATTGAAACGGCCACAGAAAAT 59.679 39.130 2.24 0.00 0.00 1.82
4411 7481 0.109597 GCTCATTGAAACGGCCACAG 60.110 55.000 2.24 0.00 0.00 3.66
4412 7482 0.821301 TGCTCATTGAAACGGCCACA 60.821 50.000 2.24 0.00 0.00 4.17
4413 7483 0.527565 ATGCTCATTGAAACGGCCAC 59.472 50.000 2.24 0.00 0.00 5.01
4414 7484 0.527113 CATGCTCATTGAAACGGCCA 59.473 50.000 2.24 0.00 0.00 5.36
4464 7534 5.201713 TCAATCTCAAGCGGGTCTTATAG 57.798 43.478 0.00 0.00 32.74 1.31
4474 7544 4.271776 TGTGATAGCAATCAATCTCAAGCG 59.728 41.667 0.00 0.00 43.69 4.68
4592 7662 7.054124 TGTGTCCTTCCCAAACATATTATCTC 58.946 38.462 0.00 0.00 0.00 2.75
4703 7773 4.400120 AGAACCAAACACGCCCTAATTAA 58.600 39.130 0.00 0.00 0.00 1.40
4704 7774 4.004982 GAGAACCAAACACGCCCTAATTA 58.995 43.478 0.00 0.00 0.00 1.40
4705 7775 2.817844 GAGAACCAAACACGCCCTAATT 59.182 45.455 0.00 0.00 0.00 1.40
4706 7776 2.433436 GAGAACCAAACACGCCCTAAT 58.567 47.619 0.00 0.00 0.00 1.73
4750 7820 1.348036 AGGCCCAACTGAGAACTGTAC 59.652 52.381 0.00 0.00 0.00 2.90
4846 7919 1.796459 GACATGCCACGTTTCGTTACT 59.204 47.619 0.00 0.00 38.32 2.24
4954 8034 0.833949 TGTGTGCTGGTAACCTCACA 59.166 50.000 0.00 0.00 36.19 3.58
5083 8167 7.496529 TGGACTATATTGTATTGCTTTGCTC 57.503 36.000 0.00 0.00 0.00 4.26
5115 8203 0.034059 CTCTCCGTTGCTCCAGTTGT 59.966 55.000 0.00 0.00 0.00 3.32
5305 10770 0.107508 CTGATGAACGGCAGGGTCAT 60.108 55.000 7.20 7.20 0.00 3.06
5388 10853 0.846693 ACTTCACCAAGCACTTCCCT 59.153 50.000 0.00 0.00 32.09 4.20
5567 11040 2.687200 ATGGAGGTGGTGCCGCTA 60.687 61.111 1.58 0.00 43.70 4.26
5584 11057 8.981647 GTTTGTTTTCTACTACGATTCCTAACA 58.018 33.333 0.00 0.00 0.00 2.41
5585 11058 8.981647 TGTTTGTTTTCTACTACGATTCCTAAC 58.018 33.333 0.00 0.00 0.00 2.34
5586 11059 9.545105 TTGTTTGTTTTCTACTACGATTCCTAA 57.455 29.630 0.00 0.00 0.00 2.69
5587 11060 9.545105 TTTGTTTGTTTTCTACTACGATTCCTA 57.455 29.630 0.00 0.00 0.00 2.94
5588 11061 8.441312 TTTGTTTGTTTTCTACTACGATTCCT 57.559 30.769 0.00 0.00 0.00 3.36
5589 11062 9.505995 TTTTTGTTTGTTTTCTACTACGATTCC 57.494 29.630 0.00 0.00 0.00 3.01
5593 11066 8.800031 GCAATTTTTGTTTGTTTTCTACTACGA 58.200 29.630 0.00 0.00 0.00 3.43
5594 11067 8.053653 GGCAATTTTTGTTTGTTTTCTACTACG 58.946 33.333 0.00 0.00 0.00 3.51
5595 11068 9.093970 AGGCAATTTTTGTTTGTTTTCTACTAC 57.906 29.630 0.00 0.00 0.00 2.73
5596 11069 9.660180 AAGGCAATTTTTGTTTGTTTTCTACTA 57.340 25.926 0.00 0.00 0.00 1.82
5610 11083 3.738791 GGGTGTTCGTAAGGCAATTTTTG 59.261 43.478 0.00 0.00 38.47 2.44
5615 11088 1.613255 CCTGGGTGTTCGTAAGGCAAT 60.613 52.381 0.00 0.00 38.47 3.56
5641 11114 5.369404 TCCAATCCTCTAATGCACCTTCATA 59.631 40.000 0.00 0.00 0.00 2.15
5685 11158 2.329379 GTCTGCTTCCACTACAACTCG 58.671 52.381 0.00 0.00 0.00 4.18
5687 11160 1.961394 TCGTCTGCTTCCACTACAACT 59.039 47.619 0.00 0.00 0.00 3.16
5703 11177 5.994887 AGTATGATCTACACTGACTCGTC 57.005 43.478 0.00 0.00 0.00 4.20
5706 11180 9.724839 GACTTAAAGTATGATCTACACTGACTC 57.275 37.037 0.00 0.00 0.00 3.36
5725 11199 2.730550 GACCGTTCGAGGGACTTAAA 57.269 50.000 11.16 0.00 41.55 1.52
5737 11211 1.131126 TCATCGTAGGTTCGACCGTTC 59.869 52.381 0.00 0.00 44.90 3.95
5738 11212 1.167851 TCATCGTAGGTTCGACCGTT 58.832 50.000 0.00 0.00 44.90 4.44
5739 11213 1.135575 GTTCATCGTAGGTTCGACCGT 60.136 52.381 0.00 0.00 44.90 4.83
5740 11214 1.542544 GTTCATCGTAGGTTCGACCG 58.457 55.000 0.00 0.00 44.90 4.79
5741 11215 1.131126 TCGTTCATCGTAGGTTCGACC 59.869 52.381 0.00 0.00 42.56 4.79
5742 11216 2.532531 TCGTTCATCGTAGGTTCGAC 57.467 50.000 0.00 0.00 42.56 4.20
5743 11217 2.032550 GGATCGTTCATCGTAGGTTCGA 59.967 50.000 0.00 0.00 43.86 3.71
5744 11218 2.382519 GGATCGTTCATCGTAGGTTCG 58.617 52.381 0.00 0.00 40.80 3.95
5752 11226 1.587876 TTCGCGGGATCGTTCATCG 60.588 57.895 6.13 0.62 38.89 3.84
5765 11239 0.942410 TCGTTTGAGGAAGGTTCGCG 60.942 55.000 0.00 0.00 0.00 5.87
5785 11259 1.180029 TCGGTCTTTAGTTCGAGGGG 58.820 55.000 0.00 0.00 0.00 4.79
5787 11261 2.666994 GCTTTCGGTCTTTAGTTCGAGG 59.333 50.000 0.00 0.00 33.11 4.63
5788 11262 3.121445 GTGCTTTCGGTCTTTAGTTCGAG 59.879 47.826 0.00 0.00 33.11 4.04
5789 11263 3.054878 GTGCTTTCGGTCTTTAGTTCGA 58.945 45.455 0.00 0.00 0.00 3.71
5790 11264 2.160013 CGTGCTTTCGGTCTTTAGTTCG 60.160 50.000 0.00 0.00 0.00 3.95
5796 11270 1.227853 AGGCGTGCTTTCGGTCTTT 60.228 52.632 0.00 0.00 0.00 2.52
5804 11278 2.744202 CAATTGTAGAGAGGCGTGCTTT 59.256 45.455 0.00 0.00 0.00 3.51
5831 11305 0.165079 GTTGCACCGACAACCATACG 59.835 55.000 0.00 0.00 43.34 3.06
5936 11410 3.412386 CACCCTTTGGTTTCTCGAAGAT 58.588 45.455 0.00 0.00 44.75 2.40
5959 11433 4.072131 TGGCTTGTCTTGGTCTTATTGAC 58.928 43.478 0.00 0.00 44.63 3.18
5964 11438 4.431416 TCTTTGGCTTGTCTTGGTCTTA 57.569 40.909 0.00 0.00 0.00 2.10
5991 11465 5.377478 GGAGGTTTTCCCCTTAGTGATATG 58.623 45.833 0.00 0.00 40.37 1.78
6068 11543 2.757077 CTTGCCGGGGAGGTCTTT 59.243 61.111 2.18 0.00 43.70 2.52
6108 11583 2.665603 GAGCCTTGACGGGAAGCT 59.334 61.111 0.00 0.00 0.00 3.74
6116 11591 2.435059 GAGCGGTGGAGCCTTGAC 60.435 66.667 0.00 0.00 38.01 3.18
6249 11726 1.293498 GTGACACGCCTCTGGATGT 59.707 57.895 0.00 0.00 0.00 3.06
6280 11757 1.665442 GCGCCATTCAACCACCTTT 59.335 52.632 0.00 0.00 0.00 3.11
6348 11825 0.957395 AGACAGGACAAGGCGCATTG 60.957 55.000 31.07 31.07 36.22 2.82
6373 11850 6.131972 AGCCACATTGCTATCATACCTAAT 57.868 37.500 0.00 0.00 40.56 1.73
6389 11866 7.559335 TTATCCAGTGATTAGATAGCCACAT 57.441 36.000 0.00 0.00 32.18 3.21
6495 11972 1.268386 GCAGCTACACGCGTATGAGTA 60.268 52.381 13.44 9.36 45.59 2.59
6529 12006 1.448119 GCTTAATCCCGGCAAGCTCC 61.448 60.000 16.47 0.00 41.14 4.70
6532 12009 1.654023 AACGCTTAATCCCGGCAAGC 61.654 55.000 14.69 14.69 40.98 4.01
6542 12020 2.017049 GGTGGAGATGCAACGCTTAAT 58.983 47.619 0.00 0.00 0.00 1.40
6545 12023 1.073025 TGGTGGAGATGCAACGCTT 59.927 52.632 0.00 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.