Multiple sequence alignment - TraesCS5B01G469800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G469800 | chr5B | 100.000 | 4273 | 0 | 0 | 1 | 4273 | 643304754 | 643309026 | 0.000000e+00 | 7891.0 |
1 | TraesCS5B01G469800 | chr5B | 92.779 | 734 | 45 | 3 | 3472 | 4198 | 448224083 | 448224815 | 0.000000e+00 | 1055.0 |
2 | TraesCS5B01G469800 | chr5B | 89.567 | 623 | 58 | 7 | 398 | 1014 | 319314734 | 319315355 | 0.000000e+00 | 784.0 |
3 | TraesCS5B01G469800 | chr5B | 82.210 | 371 | 39 | 23 | 3476 | 3829 | 124641980 | 124641620 | 1.160000e-75 | 294.0 |
4 | TraesCS5B01G469800 | chr5B | 88.083 | 193 | 22 | 1 | 1300 | 1492 | 643426427 | 643426618 | 1.200000e-55 | 228.0 |
5 | TraesCS5B01G469800 | chr5B | 99.083 | 109 | 1 | 0 | 4165 | 4273 | 448224815 | 448224923 | 3.370000e-46 | 196.0 |
6 | TraesCS5B01G469800 | chr5B | 86.842 | 152 | 13 | 2 | 3873 | 4018 | 41821448 | 41821598 | 3.420000e-36 | 163.0 |
7 | TraesCS5B01G469800 | chr5B | 96.296 | 81 | 3 | 0 | 1490 | 1570 | 643437138 | 643437218 | 2.680000e-27 | 134.0 |
8 | TraesCS5B01G469800 | chr5B | 93.617 | 47 | 2 | 1 | 1014 | 1060 | 643426384 | 643426429 | 7.670000e-08 | 69.4 |
9 | TraesCS5B01G469800 | chr5D | 93.069 | 1688 | 94 | 18 | 1804 | 3477 | 512303858 | 512305536 | 0.000000e+00 | 2447.0 |
10 | TraesCS5B01G469800 | chr5D | 90.193 | 622 | 55 | 6 | 398 | 1013 | 87164163 | 87163542 | 0.000000e+00 | 806.0 |
11 | TraesCS5B01G469800 | chr5D | 86.357 | 711 | 54 | 18 | 1014 | 1710 | 512303113 | 512303794 | 0.000000e+00 | 736.0 |
12 | TraesCS5B01G469800 | chr5D | 89.196 | 398 | 36 | 3 | 1 | 397 | 87168505 | 87168114 | 1.380000e-134 | 490.0 |
13 | TraesCS5B01G469800 | chr4A | 90.048 | 623 | 56 | 6 | 398 | 1014 | 34862493 | 34861871 | 0.000000e+00 | 802.0 |
14 | TraesCS5B01G469800 | chr4A | 85.256 | 312 | 33 | 10 | 3476 | 3780 | 711905307 | 711905002 | 4.150000e-80 | 309.0 |
15 | TraesCS5B01G469800 | chr4A | 87.302 | 63 | 7 | 1 | 4143 | 4204 | 551494916 | 551494854 | 2.130000e-08 | 71.3 |
16 | TraesCS5B01G469800 | chr6A | 89.888 | 623 | 52 | 4 | 398 | 1014 | 34970411 | 34971028 | 0.000000e+00 | 791.0 |
17 | TraesCS5B01G469800 | chr6A | 89.103 | 624 | 62 | 3 | 398 | 1015 | 1951672 | 1951049 | 0.000000e+00 | 771.0 |
18 | TraesCS5B01G469800 | chr2A | 89.711 | 622 | 57 | 7 | 398 | 1013 | 84142810 | 84143430 | 0.000000e+00 | 787.0 |
19 | TraesCS5B01G469800 | chr1B | 89.567 | 623 | 59 | 6 | 398 | 1014 | 466928199 | 466928821 | 0.000000e+00 | 785.0 |
20 | TraesCS5B01G469800 | chr1B | 89.698 | 398 | 37 | 4 | 1 | 397 | 551727693 | 551728087 | 4.930000e-139 | 505.0 |
21 | TraesCS5B01G469800 | chr1B | 86.462 | 325 | 29 | 13 | 3476 | 3793 | 66201330 | 66201646 | 4.090000e-90 | 342.0 |
22 | TraesCS5B01G469800 | chr1B | 88.028 | 284 | 25 | 8 | 3475 | 3753 | 434763495 | 434763774 | 1.150000e-85 | 327.0 |
23 | TraesCS5B01G469800 | chr7B | 89.137 | 626 | 59 | 9 | 397 | 1014 | 355672614 | 355673238 | 0.000000e+00 | 771.0 |
24 | TraesCS5B01G469800 | chr7B | 86.154 | 325 | 31 | 12 | 3476 | 3793 | 638449624 | 638449941 | 5.290000e-89 | 339.0 |
25 | TraesCS5B01G469800 | chr7B | 89.552 | 67 | 6 | 1 | 4143 | 4208 | 721203255 | 721203189 | 2.740000e-12 | 84.2 |
26 | TraesCS5B01G469800 | chr7A | 89.228 | 622 | 60 | 4 | 398 | 1013 | 218241947 | 218241327 | 0.000000e+00 | 771.0 |
27 | TraesCS5B01G469800 | chr7A | 90.132 | 152 | 8 | 2 | 3873 | 4018 | 150722063 | 150722213 | 1.570000e-44 | 191.0 |
28 | TraesCS5B01G469800 | chr7A | 88.060 | 67 | 7 | 1 | 4143 | 4208 | 719570164 | 719570098 | 1.270000e-10 | 78.7 |
29 | TraesCS5B01G469800 | chr5A | 91.055 | 559 | 37 | 8 | 1014 | 1572 | 640681606 | 640682151 | 0.000000e+00 | 743.0 |
30 | TraesCS5B01G469800 | chr5A | 84.885 | 741 | 66 | 22 | 2474 | 3198 | 640683066 | 640683776 | 0.000000e+00 | 706.0 |
31 | TraesCS5B01G469800 | chr5A | 79.681 | 502 | 68 | 19 | 1884 | 2362 | 640682171 | 640682661 | 8.860000e-87 | 331.0 |
32 | TraesCS5B01G469800 | chr5A | 84.940 | 332 | 31 | 11 | 2301 | 2615 | 640682658 | 640682987 | 6.890000e-83 | 318.0 |
33 | TraesCS5B01G469800 | chr7D | 91.206 | 398 | 34 | 1 | 1 | 397 | 171332535 | 171332138 | 1.350000e-149 | 540.0 |
34 | TraesCS5B01G469800 | chr7D | 91.206 | 398 | 34 | 1 | 1 | 397 | 171339330 | 171338933 | 1.350000e-149 | 540.0 |
35 | TraesCS5B01G469800 | chr7D | 89.474 | 133 | 12 | 2 | 4143 | 4273 | 564893453 | 564893321 | 2.640000e-37 | 167.0 |
36 | TraesCS5B01G469800 | chr7D | 89.552 | 67 | 6 | 1 | 4143 | 4208 | 623537957 | 623537891 | 2.740000e-12 | 84.2 |
37 | TraesCS5B01G469800 | chr1D | 90.680 | 397 | 36 | 1 | 1 | 397 | 288100120 | 288099725 | 1.050000e-145 | 527.0 |
38 | TraesCS5B01G469800 | chr6D | 90.428 | 397 | 38 | 0 | 1 | 397 | 6236884 | 6237280 | 1.360000e-144 | 523.0 |
39 | TraesCS5B01G469800 | chr6D | 89.421 | 397 | 42 | 0 | 1 | 397 | 50998397 | 50998793 | 6.380000e-138 | 501.0 |
40 | TraesCS5B01G469800 | chr6D | 88.477 | 243 | 17 | 4 | 3796 | 4027 | 408208886 | 408208644 | 2.520000e-72 | 283.0 |
41 | TraesCS5B01G469800 | chr6D | 93.182 | 132 | 8 | 1 | 4143 | 4273 | 408208653 | 408208522 | 4.360000e-45 | 193.0 |
42 | TraesCS5B01G469800 | chr4D | 90.201 | 398 | 36 | 3 | 1 | 397 | 373808065 | 373807670 | 2.280000e-142 | 516.0 |
43 | TraesCS5B01G469800 | chr2B | 89.196 | 398 | 39 | 4 | 1 | 397 | 727589650 | 727590044 | 1.070000e-135 | 494.0 |
44 | TraesCS5B01G469800 | chr2B | 87.500 | 152 | 12 | 3 | 3873 | 4018 | 83352581 | 83352731 | 7.350000e-38 | 169.0 |
45 | TraesCS5B01G469800 | chr2B | 87.500 | 152 | 12 | 4 | 3873 | 4018 | 83397405 | 83397555 | 7.350000e-38 | 169.0 |
46 | TraesCS5B01G469800 | chr2B | 95.455 | 44 | 2 | 0 | 2091 | 2134 | 23315020 | 23314977 | 2.130000e-08 | 71.3 |
47 | TraesCS5B01G469800 | chr6B | 87.302 | 315 | 26 | 12 | 3474 | 3780 | 717082500 | 717082192 | 8.790000e-92 | 348.0 |
48 | TraesCS5B01G469800 | chr3B | 85.849 | 318 | 32 | 11 | 3471 | 3780 | 784687159 | 784686847 | 4.120000e-85 | 326.0 |
49 | TraesCS5B01G469800 | chr3B | 80.882 | 408 | 48 | 24 | 3476 | 3867 | 824981664 | 824982057 | 1.160000e-75 | 294.0 |
50 | TraesCS5B01G469800 | chr3D | 78.285 | 548 | 69 | 37 | 3508 | 4018 | 517881511 | 517880977 | 1.490000e-79 | 307.0 |
51 | TraesCS5B01G469800 | chr3A | 88.079 | 151 | 11 | 2 | 3874 | 4018 | 710054120 | 710054269 | 5.680000e-39 | 172.0 |
52 | TraesCS5B01G469800 | chrUn | 88.806 | 134 | 11 | 4 | 4143 | 4273 | 92583693 | 92583561 | 1.230000e-35 | 161.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G469800 | chr5B | 643304754 | 643309026 | 4272 | False | 7891.0 | 7891 | 100.00000 | 1 | 4273 | 1 | chr5B.!!$F3 | 4272 |
1 | TraesCS5B01G469800 | chr5B | 319314734 | 319315355 | 621 | False | 784.0 | 784 | 89.56700 | 398 | 1014 | 1 | chr5B.!!$F2 | 616 |
2 | TraesCS5B01G469800 | chr5B | 448224083 | 448224923 | 840 | False | 625.5 | 1055 | 95.93100 | 3472 | 4273 | 2 | chr5B.!!$F5 | 801 |
3 | TraesCS5B01G469800 | chr5D | 512303113 | 512305536 | 2423 | False | 1591.5 | 2447 | 89.71300 | 1014 | 3477 | 2 | chr5D.!!$F1 | 2463 |
4 | TraesCS5B01G469800 | chr5D | 87163542 | 87168505 | 4963 | True | 648.0 | 806 | 89.69450 | 1 | 1013 | 2 | chr5D.!!$R1 | 1012 |
5 | TraesCS5B01G469800 | chr4A | 34861871 | 34862493 | 622 | True | 802.0 | 802 | 90.04800 | 398 | 1014 | 1 | chr4A.!!$R1 | 616 |
6 | TraesCS5B01G469800 | chr6A | 34970411 | 34971028 | 617 | False | 791.0 | 791 | 89.88800 | 398 | 1014 | 1 | chr6A.!!$F1 | 616 |
7 | TraesCS5B01G469800 | chr6A | 1951049 | 1951672 | 623 | True | 771.0 | 771 | 89.10300 | 398 | 1015 | 1 | chr6A.!!$R1 | 617 |
8 | TraesCS5B01G469800 | chr2A | 84142810 | 84143430 | 620 | False | 787.0 | 787 | 89.71100 | 398 | 1013 | 1 | chr2A.!!$F1 | 615 |
9 | TraesCS5B01G469800 | chr1B | 466928199 | 466928821 | 622 | False | 785.0 | 785 | 89.56700 | 398 | 1014 | 1 | chr1B.!!$F3 | 616 |
10 | TraesCS5B01G469800 | chr7B | 355672614 | 355673238 | 624 | False | 771.0 | 771 | 89.13700 | 397 | 1014 | 1 | chr7B.!!$F1 | 617 |
11 | TraesCS5B01G469800 | chr7A | 218241327 | 218241947 | 620 | True | 771.0 | 771 | 89.22800 | 398 | 1013 | 1 | chr7A.!!$R1 | 615 |
12 | TraesCS5B01G469800 | chr5A | 640681606 | 640683776 | 2170 | False | 524.5 | 743 | 85.14025 | 1014 | 3198 | 4 | chr5A.!!$F1 | 2184 |
13 | TraesCS5B01G469800 | chr3D | 517880977 | 517881511 | 534 | True | 307.0 | 307 | 78.28500 | 3508 | 4018 | 1 | chr3D.!!$R1 | 510 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
267 | 268 | 0.391597 | ACTGGGTACGTCAACTGTGG | 59.608 | 55.0 | 0.00 | 0.00 | 0.00 | 4.17 | F |
1066 | 5025 | 0.028770 | CGATCCGTCTCAGCTCAGAC | 59.971 | 60.0 | 7.85 | 7.85 | 39.68 | 3.51 | F |
1667 | 5637 | 0.322366 | TCATCTTGCAACGCATGGGA | 60.322 | 50.0 | 17.76 | 0.00 | 38.76 | 4.37 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1259 | 5218 | 0.179113 | GCCAATTTATGCGTGGGGTG | 60.179 | 55.0 | 0.0 | 0.0 | 32.71 | 4.61 | R |
2814 | 7164 | 0.988832 | TTGTATGTTCCGGGGAAGCT | 59.011 | 50.0 | 0.0 | 0.0 | 34.49 | 3.74 | R |
3546 | 7900 | 0.304098 | GCTCAGATCACATCAAGCGC | 59.696 | 55.0 | 0.0 | 0.0 | 32.97 | 5.92 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
26 | 27 | 1.880601 | GCTGCCGCATTCGATCTACG | 61.881 | 60.000 | 0.00 | 0.00 | 38.10 | 3.51 |
81 | 82 | 2.819608 | GGCAGGATTTTCTACAAGTGCA | 59.180 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
97 | 98 | 3.084039 | AGTGCACCAATCACCATGTAAG | 58.916 | 45.455 | 14.63 | 0.00 | 35.14 | 2.34 |
100 | 101 | 4.158394 | GTGCACCAATCACCATGTAAGATT | 59.842 | 41.667 | 5.22 | 0.00 | 32.53 | 2.40 |
103 | 104 | 5.577945 | GCACCAATCACCATGTAAGATTTTG | 59.422 | 40.000 | 0.00 | 0.35 | 30.04 | 2.44 |
112 | 113 | 6.582295 | CACCATGTAAGATTTTGTACAAGTGC | 59.418 | 38.462 | 8.56 | 2.30 | 34.53 | 4.40 |
113 | 114 | 6.092748 | CCATGTAAGATTTTGTACAAGTGCC | 58.907 | 40.000 | 8.56 | 0.40 | 34.08 | 5.01 |
114 | 115 | 5.699097 | TGTAAGATTTTGTACAAGTGCCC | 57.301 | 39.130 | 8.56 | 0.00 | 0.00 | 5.36 |
115 | 116 | 4.521256 | TGTAAGATTTTGTACAAGTGCCCC | 59.479 | 41.667 | 8.56 | 0.00 | 0.00 | 5.80 |
116 | 117 | 3.237268 | AGATTTTGTACAAGTGCCCCA | 57.763 | 42.857 | 8.56 | 0.00 | 0.00 | 4.96 |
149 | 150 | 4.249661 | TGTTTCTGTGTTTCTTTTTGGCC | 58.750 | 39.130 | 0.00 | 0.00 | 0.00 | 5.36 |
157 | 158 | 5.163814 | TGTGTTTCTTTTTGGCCGAATTTTG | 60.164 | 36.000 | 6.16 | 0.00 | 0.00 | 2.44 |
163 | 164 | 6.342111 | TCTTTTTGGCCGAATTTTGTTACTT | 58.658 | 32.000 | 6.16 | 0.00 | 0.00 | 2.24 |
166 | 167 | 8.488651 | TTTTTGGCCGAATTTTGTTACTTAAA | 57.511 | 26.923 | 6.16 | 0.00 | 0.00 | 1.52 |
169 | 170 | 9.760077 | TTTGGCCGAATTTTGTTACTTAAATTA | 57.240 | 25.926 | 0.00 | 0.00 | 34.91 | 1.40 |
189 | 190 | 7.959658 | AATTATGTCAGATTCCACCAAATCA | 57.040 | 32.000 | 0.00 | 0.00 | 37.98 | 2.57 |
205 | 206 | 7.011295 | CCACCAAATCATTGCCAACATTATTAC | 59.989 | 37.037 | 0.00 | 0.00 | 35.10 | 1.89 |
229 | 230 | 3.118592 | GGGAAGATGGACCAGACAACTAG | 60.119 | 52.174 | 0.00 | 0.00 | 0.00 | 2.57 |
233 | 234 | 5.568620 | AGATGGACCAGACAACTAGTTTT | 57.431 | 39.130 | 5.07 | 0.00 | 0.00 | 2.43 |
261 | 262 | 1.202557 | GGTGACAACTGGGTACGTCAA | 60.203 | 52.381 | 0.00 | 0.00 | 39.90 | 3.18 |
262 | 263 | 1.862827 | GTGACAACTGGGTACGTCAAC | 59.137 | 52.381 | 0.00 | 0.00 | 39.90 | 3.18 |
263 | 264 | 1.758280 | TGACAACTGGGTACGTCAACT | 59.242 | 47.619 | 0.00 | 0.00 | 35.54 | 3.16 |
264 | 265 | 2.132762 | GACAACTGGGTACGTCAACTG | 58.867 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
267 | 268 | 0.391597 | ACTGGGTACGTCAACTGTGG | 59.608 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
274 | 275 | 1.512926 | ACGTCAACTGTGGATTGAGC | 58.487 | 50.000 | 0.00 | 0.00 | 36.76 | 4.26 |
276 | 277 | 2.079158 | CGTCAACTGTGGATTGAGCAT | 58.921 | 47.619 | 0.00 | 0.00 | 36.76 | 3.79 |
282 | 283 | 4.261578 | ACTGTGGATTGAGCATTTTTGG | 57.738 | 40.909 | 0.00 | 0.00 | 0.00 | 3.28 |
284 | 285 | 4.240096 | CTGTGGATTGAGCATTTTTGGTC | 58.760 | 43.478 | 0.00 | 0.00 | 36.89 | 4.02 |
286 | 287 | 3.006752 | GTGGATTGAGCATTTTTGGTCCA | 59.993 | 43.478 | 3.04 | 0.00 | 35.63 | 4.02 |
287 | 288 | 3.258872 | TGGATTGAGCATTTTTGGTCCAG | 59.741 | 43.478 | 3.04 | 0.00 | 35.63 | 3.86 |
297 | 298 | 0.465460 | TTTGGTCCAGCTGGTGTCAC | 60.465 | 55.000 | 31.58 | 21.67 | 36.34 | 3.67 |
376 | 377 | 2.833943 | TGAGACTGTGGTGTATGCAGAT | 59.166 | 45.455 | 0.00 | 0.00 | 34.60 | 2.90 |
378 | 379 | 2.568956 | AGACTGTGGTGTATGCAGATGT | 59.431 | 45.455 | 0.00 | 0.00 | 34.60 | 3.06 |
379 | 380 | 2.932614 | GACTGTGGTGTATGCAGATGTC | 59.067 | 50.000 | 0.00 | 0.00 | 34.60 | 3.06 |
380 | 381 | 2.283298 | CTGTGGTGTATGCAGATGTCC | 58.717 | 52.381 | 0.00 | 0.00 | 32.39 | 4.02 |
381 | 382 | 1.627834 | TGTGGTGTATGCAGATGTCCA | 59.372 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
382 | 383 | 2.039613 | TGTGGTGTATGCAGATGTCCAA | 59.960 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
383 | 384 | 3.081061 | GTGGTGTATGCAGATGTCCAAA | 58.919 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
385 | 386 | 3.758023 | TGGTGTATGCAGATGTCCAAAAG | 59.242 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
422 | 4373 | 2.159142 | ACTTTCCCATCGACATACGTCC | 60.159 | 50.000 | 0.00 | 0.00 | 43.13 | 4.79 |
429 | 4380 | 1.944032 | TCGACATACGTCCTCGATCA | 58.056 | 50.000 | 7.77 | 0.00 | 43.13 | 2.92 |
437 | 4388 | 1.066143 | ACGTCCTCGATCAGCCAAATT | 60.066 | 47.619 | 0.00 | 0.00 | 40.62 | 1.82 |
496 | 4447 | 1.717077 | ACCTCCTCTTGTGGTCCTAGA | 59.283 | 52.381 | 0.00 | 0.00 | 36.02 | 2.43 |
499 | 4450 | 4.016479 | ACCTCCTCTTGTGGTCCTAGATAA | 60.016 | 45.833 | 0.00 | 0.00 | 36.02 | 1.75 |
509 | 4460 | 4.344390 | GTGGTCCTAGATAACGAGGGATTT | 59.656 | 45.833 | 0.00 | 0.00 | 39.00 | 2.17 |
526 | 4477 | 7.931948 | CGAGGGATTTAGTCAAATACTACCATT | 59.068 | 37.037 | 0.00 | 0.00 | 40.48 | 3.16 |
587 | 4538 | 2.102438 | GTTAGGGTTACGGGCACGC | 61.102 | 63.158 | 9.12 | 0.00 | 46.04 | 5.34 |
592 | 4543 | 2.262292 | GTTACGGGCACGCCACTA | 59.738 | 61.111 | 9.12 | 0.00 | 46.04 | 2.74 |
693 | 4649 | 0.842030 | ATGGCCACCTCTTCTCACCA | 60.842 | 55.000 | 8.16 | 0.00 | 0.00 | 4.17 |
721 | 4678 | 0.953471 | CGTTGATCGCCCCTGTTTCA | 60.953 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
725 | 4682 | 0.394352 | GATCGCCCCTGTTTCACCAT | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
734 | 4691 | 3.265791 | CCTGTTTCACCATAGCAGAGAC | 58.734 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
746 | 4703 | 1.484444 | GCAGAGACAGGTGGGGAAGT | 61.484 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
811 | 4769 | 1.926510 | GCTCTTTTGCAAAAACGCACT | 59.073 | 42.857 | 27.07 | 0.00 | 42.87 | 4.40 |
900 | 4859 | 2.473457 | GGCGGTCAGGCGAAATTAA | 58.527 | 52.632 | 0.00 | 0.00 | 35.04 | 1.40 |
921 | 4880 | 2.129607 | GACCTCGCGTGAACAACTTAA | 58.870 | 47.619 | 10.21 | 0.00 | 0.00 | 1.85 |
928 | 4887 | 5.260140 | TCGCGTGAACAACTTAAAAAGAAG | 58.740 | 37.500 | 5.77 | 0.00 | 0.00 | 2.85 |
950 | 4909 | 5.625150 | AGTAGGACCCAGATATGCATTTTC | 58.375 | 41.667 | 3.54 | 2.57 | 0.00 | 2.29 |
954 | 4913 | 5.721000 | AGGACCCAGATATGCATTTTCAAAA | 59.279 | 36.000 | 3.54 | 0.00 | 0.00 | 2.44 |
1000 | 4959 | 4.138290 | TGAAAAAGAATTAGGACCGTGCA | 58.862 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
1029 | 4988 | 0.637195 | CTCTCCCCTCTTCCCCTGTA | 59.363 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1060 | 5019 | 1.663074 | GATGCCGATCCGTCTCAGC | 60.663 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
1061 | 5020 | 2.081425 | GATGCCGATCCGTCTCAGCT | 62.081 | 60.000 | 0.00 | 0.00 | 0.00 | 4.24 |
1063 | 5022 | 2.775856 | GCCGATCCGTCTCAGCTCA | 61.776 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
1065 | 5024 | 1.098129 | CCGATCCGTCTCAGCTCAGA | 61.098 | 60.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1066 | 5025 | 0.028770 | CGATCCGTCTCAGCTCAGAC | 59.971 | 60.000 | 7.85 | 7.85 | 39.68 | 3.51 |
1067 | 5026 | 1.388547 | GATCCGTCTCAGCTCAGACT | 58.611 | 55.000 | 16.23 | 0.00 | 40.75 | 3.24 |
1068 | 5027 | 1.748493 | GATCCGTCTCAGCTCAGACTT | 59.252 | 52.381 | 16.23 | 0.26 | 40.75 | 3.01 |
1069 | 5028 | 1.169577 | TCCGTCTCAGCTCAGACTTC | 58.830 | 55.000 | 16.23 | 0.00 | 40.75 | 3.01 |
1107 | 5066 | 3.394836 | GCCGCCTCCACTTCCTCT | 61.395 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
1248 | 5207 | 2.277404 | GAGTCGCCTCCTCCTCCT | 59.723 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
1250 | 5209 | 2.835895 | GTCGCCTCCTCCTCCTCC | 60.836 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1251 | 5210 | 3.024356 | TCGCCTCCTCCTCCTCCT | 61.024 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
1252 | 5211 | 2.042435 | CGCCTCCTCCTCCTCCTT | 60.042 | 66.667 | 0.00 | 0.00 | 0.00 | 3.36 |
1253 | 5212 | 2.131067 | CGCCTCCTCCTCCTCCTTC | 61.131 | 68.421 | 0.00 | 0.00 | 0.00 | 3.46 |
1295 | 5256 | 2.317609 | GCCGCGAACTGAGCTTCAA | 61.318 | 57.895 | 8.23 | 0.00 | 0.00 | 2.69 |
1383 | 5344 | 3.061697 | GGTTTCTATTGTGTTCGTAGGCG | 59.938 | 47.826 | 0.00 | 0.00 | 39.92 | 5.52 |
1424 | 5385 | 0.761802 | GGGGCAGAGGATTCCTGTAG | 59.238 | 60.000 | 10.74 | 2.66 | 31.76 | 2.74 |
1425 | 5386 | 1.501582 | GGGCAGAGGATTCCTGTAGT | 58.498 | 55.000 | 10.74 | 0.00 | 31.76 | 2.73 |
1426 | 5387 | 1.139853 | GGGCAGAGGATTCCTGTAGTG | 59.860 | 57.143 | 10.74 | 3.47 | 31.76 | 2.74 |
1523 | 5484 | 1.443194 | CATTGTGGCGAGCAAGCAC | 60.443 | 57.895 | 5.80 | 0.00 | 39.27 | 4.40 |
1529 | 5490 | 2.317609 | GGCGAGCAAGCACGAAGAA | 61.318 | 57.895 | 15.67 | 0.00 | 39.27 | 2.52 |
1539 | 5500 | 1.134220 | AGCACGAAGAACCTTTGTCCA | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
1540 | 5501 | 1.673920 | GCACGAAGAACCTTTGTCCAA | 59.326 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
1592 | 5556 | 3.392882 | CCCATTTTGTTGCTTCTCCAAC | 58.607 | 45.455 | 0.00 | 0.00 | 44.07 | 3.77 |
1609 | 5579 | 2.571212 | CAACAGCAGGTGGTTTGTCTA | 58.429 | 47.619 | 4.26 | 0.00 | 0.00 | 2.59 |
1621 | 5591 | 6.267496 | GTGGTTTGTCTAGCACCATTTTAT | 57.733 | 37.500 | 6.30 | 0.00 | 42.59 | 1.40 |
1623 | 5593 | 7.822658 | GTGGTTTGTCTAGCACCATTTTATAA | 58.177 | 34.615 | 6.30 | 0.00 | 42.59 | 0.98 |
1624 | 5594 | 8.301002 | GTGGTTTGTCTAGCACCATTTTATAAA | 58.699 | 33.333 | 0.00 | 0.00 | 42.59 | 1.40 |
1626 | 5596 | 8.520351 | GGTTTGTCTAGCACCATTTTATAAACT | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1630 | 5600 | 9.906660 | TGTCTAGCACCATTTTATAAACTTTTG | 57.093 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
1634 | 5604 | 6.586082 | AGCACCATTTTATAAACTTTTGCTCG | 59.414 | 34.615 | 13.83 | 0.00 | 30.98 | 5.03 |
1653 | 5623 | 4.808364 | GCTCGCTTCAACTTCTTATCATCT | 59.192 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1666 | 5636 | 0.742505 | ATCATCTTGCAACGCATGGG | 59.257 | 50.000 | 8.44 | 8.44 | 38.76 | 4.00 |
1667 | 5637 | 0.322366 | TCATCTTGCAACGCATGGGA | 60.322 | 50.000 | 17.76 | 0.00 | 38.76 | 4.37 |
1686 | 5660 | 2.158957 | GGACGAGAGAACATGCCCATTA | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1691 | 5665 | 4.576053 | CGAGAGAACATGCCCATTAAATCA | 59.424 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1693 | 5667 | 6.427853 | CGAGAGAACATGCCCATTAAATCATA | 59.572 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
1700 | 5674 | 7.121382 | ACATGCCCATTAAATCATATAGGGAG | 58.879 | 38.462 | 0.00 | 0.00 | 36.96 | 4.30 |
1702 | 5676 | 7.341885 | TGCCCATTAAATCATATAGGGAGAA | 57.658 | 36.000 | 0.00 | 0.00 | 36.96 | 2.87 |
1703 | 5677 | 7.405292 | TGCCCATTAAATCATATAGGGAGAAG | 58.595 | 38.462 | 0.00 | 0.00 | 36.96 | 2.85 |
1704 | 5678 | 7.018550 | TGCCCATTAAATCATATAGGGAGAAGT | 59.981 | 37.037 | 0.00 | 0.00 | 36.96 | 3.01 |
1705 | 5679 | 7.554476 | GCCCATTAAATCATATAGGGAGAAGTC | 59.446 | 40.741 | 0.00 | 0.00 | 36.96 | 3.01 |
1706 | 5680 | 8.605947 | CCCATTAAATCATATAGGGAGAAGTCA | 58.394 | 37.037 | 0.00 | 0.00 | 36.96 | 3.41 |
1731 | 5705 | 4.882842 | TTTTGTAAATGAAAGAGGGGCC | 57.117 | 40.909 | 0.00 | 0.00 | 0.00 | 5.80 |
1732 | 5706 | 3.825908 | TTGTAAATGAAAGAGGGGCCT | 57.174 | 42.857 | 0.84 | 0.00 | 0.00 | 5.19 |
1733 | 5707 | 3.366052 | TGTAAATGAAAGAGGGGCCTC | 57.634 | 47.619 | 0.84 | 0.00 | 43.03 | 4.70 |
1734 | 5708 | 2.025321 | TGTAAATGAAAGAGGGGCCTCC | 60.025 | 50.000 | 0.00 | 0.00 | 43.70 | 4.30 |
1745 | 5719 | 3.097162 | GGCCTCCCCCTCCGATTT | 61.097 | 66.667 | 0.00 | 0.00 | 0.00 | 2.17 |
1746 | 5720 | 2.511403 | GCCTCCCCCTCCGATTTC | 59.489 | 66.667 | 0.00 | 0.00 | 0.00 | 2.17 |
1747 | 5721 | 2.073101 | GCCTCCCCCTCCGATTTCT | 61.073 | 63.158 | 0.00 | 0.00 | 0.00 | 2.52 |
1748 | 5722 | 0.763223 | GCCTCCCCCTCCGATTTCTA | 60.763 | 60.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1749 | 5723 | 2.031495 | CCTCCCCCTCCGATTTCTAT | 57.969 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1750 | 5724 | 2.339769 | CCTCCCCCTCCGATTTCTATT | 58.660 | 52.381 | 0.00 | 0.00 | 0.00 | 1.73 |
1751 | 5725 | 3.517612 | CCTCCCCCTCCGATTTCTATTA | 58.482 | 50.000 | 0.00 | 0.00 | 0.00 | 0.98 |
1752 | 5726 | 3.908103 | CCTCCCCCTCCGATTTCTATTAA | 59.092 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
1753 | 5727 | 4.349930 | CCTCCCCCTCCGATTTCTATTAAA | 59.650 | 45.833 | 0.00 | 0.00 | 0.00 | 1.52 |
1754 | 5728 | 5.014228 | CCTCCCCCTCCGATTTCTATTAAAT | 59.986 | 44.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1755 | 5729 | 6.214819 | CCTCCCCCTCCGATTTCTATTAAATA | 59.785 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
1756 | 5730 | 7.256908 | CCTCCCCCTCCGATTTCTATTAAATAA | 60.257 | 40.741 | 0.00 | 0.00 | 0.00 | 1.40 |
1757 | 5731 | 8.048016 | TCCCCCTCCGATTTCTATTAAATAAA | 57.952 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
1758 | 5732 | 7.940688 | TCCCCCTCCGATTTCTATTAAATAAAC | 59.059 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
1759 | 5733 | 7.722285 | CCCCCTCCGATTTCTATTAAATAAACA | 59.278 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
1760 | 5734 | 9.127277 | CCCCTCCGATTTCTATTAAATAAACAA | 57.873 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1788 | 5762 | 3.955471 | TCAGGGAGAAGGCATTTGTAAG | 58.045 | 45.455 | 0.00 | 0.00 | 0.00 | 2.34 |
1792 | 5766 | 5.011023 | CAGGGAGAAGGCATTTGTAAGTTTT | 59.989 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1793 | 5767 | 5.011023 | AGGGAGAAGGCATTTGTAAGTTTTG | 59.989 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1795 | 5769 | 6.280643 | GGAGAAGGCATTTGTAAGTTTTGTT | 58.719 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1796 | 5770 | 6.420903 | GGAGAAGGCATTTGTAAGTTTTGTTC | 59.579 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
1797 | 5771 | 5.977129 | AGAAGGCATTTGTAAGTTTTGTTCG | 59.023 | 36.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1798 | 5772 | 5.257082 | AGGCATTTGTAAGTTTTGTTCGT | 57.743 | 34.783 | 0.00 | 0.00 | 0.00 | 3.85 |
1800 | 5774 | 5.746721 | AGGCATTTGTAAGTTTTGTTCGTTC | 59.253 | 36.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1812 | 5830 | 1.264020 | TGTTCGTTCATTGTGCTGCTC | 59.736 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
1836 | 5854 | 0.606096 | GCAAAATTGGTTAGGCCCGT | 59.394 | 50.000 | 0.00 | 0.00 | 36.04 | 5.28 |
1849 | 5871 | 2.112029 | GCCCGTGCCCGAATTATTT | 58.888 | 52.632 | 0.00 | 0.00 | 35.63 | 1.40 |
1852 | 5874 | 3.075884 | GCCCGTGCCCGAATTATTTATA | 58.924 | 45.455 | 0.00 | 0.00 | 35.63 | 0.98 |
1856 | 5878 | 5.064707 | CCCGTGCCCGAATTATTTATATCTG | 59.935 | 44.000 | 0.00 | 0.00 | 35.63 | 2.90 |
1858 | 5880 | 6.402118 | CCGTGCCCGAATTATTTATATCTGTG | 60.402 | 42.308 | 0.00 | 0.00 | 35.63 | 3.66 |
1869 | 5891 | 8.500753 | TTATTTATATCTGTGCCGTTTTCTGT | 57.499 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
1876 | 5898 | 2.097791 | TGTGCCGTTTTCTGTTGGTTAC | 59.902 | 45.455 | 0.00 | 0.00 | 0.00 | 2.50 |
1877 | 5899 | 2.356695 | GTGCCGTTTTCTGTTGGTTACT | 59.643 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
1880 | 5902 | 2.601266 | CCGTTTTCTGTTGGTTACTGCG | 60.601 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
1906 | 5928 | 7.215719 | TGAACTATATCTATGGACTTGACCG | 57.784 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2014 | 6039 | 3.927758 | TGCTTTCGATGGCAAATCATTTG | 59.072 | 39.130 | 5.68 | 5.68 | 43.44 | 2.32 |
2143 | 6185 | 6.391227 | AAAACTTGTTCAAGTATGAGTGGG | 57.609 | 37.500 | 16.84 | 0.00 | 36.78 | 4.61 |
2146 | 6188 | 2.778299 | TGTTCAAGTATGAGTGGGTGC | 58.222 | 47.619 | 0.00 | 0.00 | 36.78 | 5.01 |
2173 | 6215 | 9.331282 | GGGTATTGATCTCACTTATATTATGGC | 57.669 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
2193 | 6235 | 1.126296 | CGCAGATATCTTGCAGATGCG | 59.874 | 52.381 | 15.77 | 15.77 | 41.51 | 4.73 |
2254 | 6296 | 9.296400 | GTATTGTGTTCATTTGTTGTACTGTTT | 57.704 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2295 | 6338 | 9.430838 | CAGCTTTAGAATTAATTTCAGATGTCG | 57.569 | 33.333 | 1.43 | 0.00 | 36.75 | 4.35 |
2357 | 6458 | 0.826715 | TCAGAGGATACAGCCAGTGC | 59.173 | 55.000 | 0.00 | 0.00 | 41.41 | 4.40 |
2394 | 6495 | 2.888594 | CAGCGAAAGTATCTCCGGAAA | 58.111 | 47.619 | 5.23 | 0.00 | 0.00 | 3.13 |
2454 | 6555 | 1.411612 | GCCCTTACGCAGGTATAGTGT | 59.588 | 52.381 | 0.75 | 0.00 | 42.02 | 3.55 |
2460 | 6561 | 1.747355 | ACGCAGGTATAGTGTTACGCT | 59.253 | 47.619 | 3.31 | 3.31 | 0.00 | 5.07 |
2461 | 6562 | 2.117137 | CGCAGGTATAGTGTTACGCTG | 58.883 | 52.381 | 8.86 | 0.00 | 0.00 | 5.18 |
2507 | 6842 | 5.503683 | GCTCAGCAGAACTATATTTGCACTG | 60.504 | 44.000 | 0.00 | 0.00 | 38.97 | 3.66 |
2588 | 6936 | 8.898761 | CCAACTGGTGCTTATTTGTAATGTATA | 58.101 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
2733 | 7083 | 7.611855 | AGAAATTATCTTCCACAGGACGAAAAT | 59.388 | 33.333 | 0.00 | 0.00 | 33.75 | 1.82 |
2814 | 7164 | 1.383456 | AACTGCACGCCTCAAAGCAA | 61.383 | 50.000 | 0.00 | 0.00 | 36.44 | 3.91 |
2883 | 7233 | 1.612442 | TGCTAGGCCGTTCCTCCTT | 60.612 | 57.895 | 0.00 | 0.00 | 43.20 | 3.36 |
2994 | 7344 | 3.077556 | AAGGAGTCCGCCTCGCAT | 61.078 | 61.111 | 2.76 | 0.00 | 41.46 | 4.73 |
2998 | 7348 | 1.141019 | GAGTCCGCCTCGCATGTAA | 59.859 | 57.895 | 0.00 | 0.00 | 0.00 | 2.41 |
3057 | 7407 | 2.163815 | CGAGGACCACTACTTGTACCTG | 59.836 | 54.545 | 0.00 | 0.00 | 0.00 | 4.00 |
3078 | 7428 | 6.150140 | ACCTGTTAAATGAAGAGACAGATTGC | 59.850 | 38.462 | 3.56 | 0.00 | 39.97 | 3.56 |
3101 | 7451 | 0.249868 | GGCGGTGTGATATAGCTGCA | 60.250 | 55.000 | 1.02 | 0.00 | 0.00 | 4.41 |
3142 | 7494 | 1.269726 | GCTGGTGTTGTGTTTCCATGG | 60.270 | 52.381 | 4.97 | 4.97 | 0.00 | 3.66 |
3147 | 7499 | 3.004315 | GGTGTTGTGTTTCCATGGTGTAG | 59.996 | 47.826 | 12.58 | 0.00 | 0.00 | 2.74 |
3148 | 7500 | 3.630312 | GTGTTGTGTTTCCATGGTGTAGT | 59.370 | 43.478 | 12.58 | 0.00 | 0.00 | 2.73 |
3149 | 7501 | 3.629855 | TGTTGTGTTTCCATGGTGTAGTG | 59.370 | 43.478 | 12.58 | 0.00 | 0.00 | 2.74 |
3150 | 7502 | 3.569194 | TGTGTTTCCATGGTGTAGTGT | 57.431 | 42.857 | 12.58 | 0.00 | 0.00 | 3.55 |
3151 | 7503 | 4.691326 | TGTGTTTCCATGGTGTAGTGTA | 57.309 | 40.909 | 12.58 | 0.00 | 0.00 | 2.90 |
3152 | 7504 | 4.637276 | TGTGTTTCCATGGTGTAGTGTAG | 58.363 | 43.478 | 12.58 | 0.00 | 0.00 | 2.74 |
3164 | 7516 | 2.745821 | TGTAGTGTAGCTGTAGGTCACG | 59.254 | 50.000 | 0.00 | 0.00 | 34.71 | 4.35 |
3167 | 7519 | 1.135460 | GTGTAGCTGTAGGTCACGGAC | 60.135 | 57.143 | 0.00 | 0.00 | 35.28 | 4.79 |
3171 | 7523 | 0.525668 | GCTGTAGGTCACGGACATCG | 60.526 | 60.000 | 6.41 | 0.00 | 45.88 | 3.84 |
3243 | 7595 | 5.312079 | AGCTGCTCCATTTTATGATACTCC | 58.688 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
3264 | 7616 | 8.090788 | ACTCCCTGTGAACTGTAATATATGTT | 57.909 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
3269 | 7621 | 8.397906 | CCTGTGAACTGTAATATATGTTGGTTG | 58.602 | 37.037 | 0.00 | 0.00 | 0.00 | 3.77 |
3272 | 7624 | 7.696453 | GTGAACTGTAATATATGTTGGTTGTGC | 59.304 | 37.037 | 0.00 | 0.00 | 0.00 | 4.57 |
3274 | 7626 | 7.695480 | ACTGTAATATATGTTGGTTGTGCAA | 57.305 | 32.000 | 0.00 | 0.00 | 0.00 | 4.08 |
3370 | 7722 | 7.864379 | CCTAATATGAGCAAAAATAGCACTTGG | 59.136 | 37.037 | 0.00 | 0.00 | 0.00 | 3.61 |
3373 | 7725 | 6.588719 | ATGAGCAAAAATAGCACTTGGTAA | 57.411 | 33.333 | 0.00 | 0.00 | 31.31 | 2.85 |
3396 | 7750 | 5.788450 | ACATCACTTCTACAAACAGAGGAG | 58.212 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
3428 | 7782 | 6.991938 | CCAACAAGAAAATGGGTCATCTTTA | 58.008 | 36.000 | 0.00 | 0.00 | 30.01 | 1.85 |
3454 | 7808 | 4.764823 | TGTGAAACACAGAAGGTTGTTCTT | 59.235 | 37.500 | 0.25 | 0.00 | 45.67 | 2.52 |
3491 | 7845 | 6.532365 | AGCGAAAATCGAGAAATAAGGATC | 57.468 | 37.500 | 3.61 | 0.00 | 43.74 | 3.36 |
3493 | 7847 | 5.236478 | GCGAAAATCGAGAAATAAGGATCCA | 59.764 | 40.000 | 15.82 | 0.00 | 43.74 | 3.41 |
3495 | 7849 | 6.701841 | CGAAAATCGAGAAATAAGGATCCAGA | 59.298 | 38.462 | 15.82 | 0.48 | 43.74 | 3.86 |
3496 | 7850 | 7.306866 | CGAAAATCGAGAAATAAGGATCCAGAC | 60.307 | 40.741 | 15.82 | 0.00 | 43.74 | 3.51 |
3497 | 7851 | 4.569761 | TCGAGAAATAAGGATCCAGACG | 57.430 | 45.455 | 15.82 | 7.94 | 0.00 | 4.18 |
3533 | 7887 | 1.678970 | GCGATTTGGGCTTCCTGGT | 60.679 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
3537 | 7891 | 0.112412 | ATTTGGGCTTCCTGGTCGTT | 59.888 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3545 | 7899 | 0.036388 | TTCCTGGTCGTTGGATCTGC | 60.036 | 55.000 | 0.00 | 0.00 | 31.76 | 4.26 |
3546 | 7900 | 1.811266 | CCTGGTCGTTGGATCTGCG | 60.811 | 63.158 | 0.00 | 0.00 | 0.00 | 5.18 |
3547 | 7901 | 2.434185 | TGGTCGTTGGATCTGCGC | 60.434 | 61.111 | 0.00 | 0.00 | 0.00 | 6.09 |
3556 | 7910 | 2.176273 | GGATCTGCGCGCTTGATGT | 61.176 | 57.895 | 32.52 | 18.46 | 0.00 | 3.06 |
3563 | 7917 | 1.423721 | GCGCGCTTGATGTGATCTGA | 61.424 | 55.000 | 26.67 | 0.00 | 0.00 | 3.27 |
3742 | 8097 | 1.885163 | CGCCCGTGGAGAAACCTAGT | 61.885 | 60.000 | 0.00 | 0.00 | 39.86 | 2.57 |
4100 | 8511 | 1.590259 | GGCTTCTCATCGTCTCCGC | 60.590 | 63.158 | 0.00 | 0.00 | 0.00 | 5.54 |
4137 | 8548 | 2.490217 | CTCATCGTCTCCGCCGTT | 59.510 | 61.111 | 0.00 | 0.00 | 0.00 | 4.44 |
4163 | 8607 | 0.937231 | GCGCTGCTCCTAATCGTCTC | 60.937 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
26 | 27 | 4.151689 | TCCGATTTTGACACAAGACGAATC | 59.848 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
81 | 82 | 6.916360 | ACAAAATCTTACATGGTGATTGGT | 57.084 | 33.333 | 0.00 | 4.09 | 31.70 | 3.67 |
97 | 98 | 4.494484 | GATTGGGGCACTTGTACAAAATC | 58.506 | 43.478 | 10.03 | 9.91 | 0.00 | 2.17 |
100 | 101 | 1.883275 | CGATTGGGGCACTTGTACAAA | 59.117 | 47.619 | 10.03 | 0.00 | 0.00 | 2.83 |
103 | 104 | 2.038387 | ATCGATTGGGGCACTTGTAC | 57.962 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
112 | 113 | 4.158394 | ACAGAAACATCAAATCGATTGGGG | 59.842 | 41.667 | 12.25 | 7.43 | 39.62 | 4.96 |
113 | 114 | 5.097529 | CACAGAAACATCAAATCGATTGGG | 58.902 | 41.667 | 12.25 | 7.56 | 39.62 | 4.12 |
114 | 115 | 5.702865 | ACACAGAAACATCAAATCGATTGG | 58.297 | 37.500 | 12.25 | 9.09 | 39.62 | 3.16 |
115 | 116 | 7.592533 | AGAAACACAGAAACATCAAATCGATTG | 59.407 | 33.333 | 12.25 | 1.97 | 40.58 | 2.67 |
116 | 117 | 7.651808 | AGAAACACAGAAACATCAAATCGATT | 58.348 | 30.769 | 4.39 | 4.39 | 29.21 | 3.34 |
163 | 164 | 9.473007 | TGATTTGGTGGAATCTGACATAATTTA | 57.527 | 29.630 | 0.00 | 0.00 | 37.04 | 1.40 |
166 | 167 | 8.418662 | CAATGATTTGGTGGAATCTGACATAAT | 58.581 | 33.333 | 0.00 | 0.00 | 37.04 | 1.28 |
169 | 170 | 5.394883 | GCAATGATTTGGTGGAATCTGACAT | 60.395 | 40.000 | 0.00 | 0.00 | 37.04 | 3.06 |
189 | 190 | 6.194235 | TCTTCCCAGTAATAATGTTGGCAAT | 58.806 | 36.000 | 1.92 | 0.00 | 0.00 | 3.56 |
205 | 206 | 1.279496 | TGTCTGGTCCATCTTCCCAG | 58.721 | 55.000 | 0.00 | 0.00 | 45.81 | 4.45 |
246 | 247 | 1.864711 | CACAGTTGACGTACCCAGTTG | 59.135 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
248 | 249 | 0.391597 | CCACAGTTGACGTACCCAGT | 59.608 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
249 | 250 | 0.677288 | TCCACAGTTGACGTACCCAG | 59.323 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
261 | 262 | 3.642848 | ACCAAAAATGCTCAATCCACAGT | 59.357 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
262 | 263 | 4.240096 | GACCAAAAATGCTCAATCCACAG | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
263 | 264 | 3.006752 | GGACCAAAAATGCTCAATCCACA | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
264 | 265 | 3.006752 | TGGACCAAAAATGCTCAATCCAC | 59.993 | 43.478 | 0.00 | 0.00 | 30.08 | 4.02 |
267 | 268 | 3.056322 | AGCTGGACCAAAAATGCTCAATC | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
274 | 275 | 1.688197 | ACACCAGCTGGACCAAAAATG | 59.312 | 47.619 | 39.19 | 24.68 | 38.94 | 2.32 |
276 | 277 | 1.341482 | TGACACCAGCTGGACCAAAAA | 60.341 | 47.619 | 39.19 | 14.16 | 38.94 | 1.94 |
282 | 283 | 1.963338 | GCAGTGACACCAGCTGGAC | 60.963 | 63.158 | 39.19 | 25.37 | 38.94 | 4.02 |
284 | 285 | 1.512996 | CTTGCAGTGACACCAGCTGG | 61.513 | 60.000 | 31.60 | 31.60 | 42.17 | 4.85 |
286 | 287 | 1.528824 | ACTTGCAGTGACACCAGCT | 59.471 | 52.632 | 18.09 | 0.00 | 0.00 | 4.24 |
287 | 288 | 4.147701 | ACTTGCAGTGACACCAGC | 57.852 | 55.556 | 12.36 | 12.36 | 0.00 | 4.85 |
297 | 298 | 3.003068 | CACCTCTGTTTCTTCACTTGCAG | 59.997 | 47.826 | 0.00 | 0.00 | 0.00 | 4.41 |
342 | 343 | 1.123077 | AGTCTCAACAGTGGTCTGCA | 58.877 | 50.000 | 0.00 | 0.00 | 44.77 | 4.41 |
376 | 377 | 5.535783 | TGCTTCATTCATCTTCTTTTGGACA | 59.464 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
378 | 379 | 6.266103 | AGTTGCTTCATTCATCTTCTTTTGGA | 59.734 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
379 | 380 | 6.453092 | AGTTGCTTCATTCATCTTCTTTTGG | 58.547 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
380 | 381 | 7.941795 | AAGTTGCTTCATTCATCTTCTTTTG | 57.058 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
381 | 382 | 7.654923 | GGAAAGTTGCTTCATTCATCTTCTTTT | 59.345 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
382 | 383 | 7.150640 | GGAAAGTTGCTTCATTCATCTTCTTT | 58.849 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
383 | 384 | 6.294955 | GGGAAAGTTGCTTCATTCATCTTCTT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
385 | 386 | 5.047802 | TGGGAAAGTTGCTTCATTCATCTTC | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
422 | 4373 | 1.004185 | CTGCGAATTTGGCTGATCGAG | 60.004 | 52.381 | 4.99 | 0.00 | 37.48 | 4.04 |
429 | 4380 | 3.006752 | TGGATTTTTCTGCGAATTTGGCT | 59.993 | 39.130 | 4.99 | 0.00 | 0.00 | 4.75 |
437 | 4388 | 3.609853 | ACTATGCTGGATTTTTCTGCGA | 58.390 | 40.909 | 0.00 | 0.00 | 32.79 | 5.10 |
496 | 4447 | 9.978044 | GTAGTATTTGACTAAATCCCTCGTTAT | 57.022 | 33.333 | 0.00 | 0.00 | 42.43 | 1.89 |
499 | 4450 | 6.381994 | TGGTAGTATTTGACTAAATCCCTCGT | 59.618 | 38.462 | 0.00 | 0.00 | 42.43 | 4.18 |
509 | 4460 | 7.652105 | GCTCGAATCAATGGTAGTATTTGACTA | 59.348 | 37.037 | 0.00 | 0.00 | 39.81 | 2.59 |
526 | 4477 | 4.307432 | GGATTCCGATTTAGCTCGAATCA | 58.693 | 43.478 | 17.82 | 4.50 | 41.12 | 2.57 |
550 | 4501 | 6.249192 | CCTAACCCTCAATCCTCTTTTTCTT | 58.751 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
586 | 4537 | 3.609258 | CGCGATACGGTTAGTGGC | 58.391 | 61.111 | 0.00 | 0.00 | 38.44 | 5.01 |
710 | 4667 | 0.323360 | TGCTATGGTGAAACAGGGGC | 60.323 | 55.000 | 0.00 | 0.00 | 39.98 | 5.80 |
721 | 4678 | 1.198713 | CCACCTGTCTCTGCTATGGT | 58.801 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
725 | 4682 | 0.116342 | TTCCCCACCTGTCTCTGCTA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 3.49 |
734 | 4691 | 1.557269 | CCTCTCCACTTCCCCACCTG | 61.557 | 65.000 | 0.00 | 0.00 | 0.00 | 4.00 |
746 | 4703 | 2.176889 | CCGTAGTCCTTTTCCTCTCCA | 58.823 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
800 | 4757 | 0.929824 | CGACCAGCAGTGCGTTTTTG | 60.930 | 55.000 | 10.00 | 1.53 | 0.00 | 2.44 |
900 | 4859 | 0.104304 | AAGTTGTTCACGCGAGGTCT | 59.896 | 50.000 | 15.93 | 0.00 | 0.00 | 3.85 |
908 | 4867 | 7.849515 | GTCCTACTTCTTTTTAAGTTGTTCACG | 59.150 | 37.037 | 0.00 | 0.00 | 40.20 | 4.35 |
921 | 4880 | 5.191722 | TGCATATCTGGGTCCTACTTCTTTT | 59.808 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
928 | 4887 | 5.376625 | TGAAAATGCATATCTGGGTCCTAC | 58.623 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
954 | 4913 | 9.667107 | TCAAAAGTATCGATTGAGTCCTAATTT | 57.333 | 29.630 | 1.71 | 0.00 | 0.00 | 1.82 |
972 | 4931 | 8.347035 | CACGGTCCTAATTCTTTTTCAAAAGTA | 58.653 | 33.333 | 11.01 | 3.36 | 44.37 | 2.24 |
1000 | 4959 | 4.385754 | GGAAGAGGGGAGAGTAAAATGCAT | 60.386 | 45.833 | 0.00 | 0.00 | 0.00 | 3.96 |
1069 | 5028 | 1.820906 | CCGCCATGTCCATGTCTGG | 60.821 | 63.158 | 6.53 | 1.85 | 44.64 | 3.86 |
1259 | 5218 | 0.179113 | GCCAATTTATGCGTGGGGTG | 60.179 | 55.000 | 0.00 | 0.00 | 32.71 | 4.61 |
1270 | 5231 | 1.083489 | CTCAGTTCGCGGCCAATTTA | 58.917 | 50.000 | 6.13 | 0.00 | 0.00 | 1.40 |
1271 | 5232 | 1.875963 | CTCAGTTCGCGGCCAATTT | 59.124 | 52.632 | 6.13 | 0.00 | 0.00 | 1.82 |
1295 | 5256 | 7.979444 | TTCGAGAACAAAAATAATCTGGAGT | 57.021 | 32.000 | 0.00 | 0.00 | 30.13 | 3.85 |
1354 | 5315 | 4.630069 | CGAACACAATAGAAACCTACAGGG | 59.370 | 45.833 | 0.00 | 0.00 | 40.27 | 4.45 |
1355 | 5316 | 5.235516 | ACGAACACAATAGAAACCTACAGG | 58.764 | 41.667 | 0.00 | 0.00 | 42.17 | 4.00 |
1383 | 5344 | 2.747855 | CCCCAGTTTCCGCAGAGC | 60.748 | 66.667 | 0.00 | 0.00 | 0.00 | 4.09 |
1390 | 5351 | 1.535444 | CCCCAAACCCCCAGTTTCC | 60.535 | 63.158 | 0.00 | 0.00 | 45.85 | 3.13 |
1398 | 5359 | 2.168272 | AATCCTCTGCCCCAAACCCC | 62.168 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
1438 | 5399 | 0.861837 | CAGCACAGTCGGTCAGAAAC | 59.138 | 55.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1472 | 5433 | 3.617263 | GGGTTATGCACTCGTAACAGAAG | 59.383 | 47.826 | 9.50 | 0.00 | 43.26 | 2.85 |
1523 | 5484 | 3.563808 | TCACATTGGACAAAGGTTCTTCG | 59.436 | 43.478 | 0.00 | 0.00 | 28.05 | 3.79 |
1529 | 5490 | 3.244181 | GGCATTTCACATTGGACAAAGGT | 60.244 | 43.478 | 0.00 | 0.00 | 31.58 | 3.50 |
1539 | 5500 | 1.003464 | GCAAAGGGGGCATTTCACATT | 59.997 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
1540 | 5501 | 0.614812 | GCAAAGGGGGCATTTCACAT | 59.385 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1592 | 5556 | 1.160137 | GCTAGACAAACCACCTGCTG | 58.840 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1594 | 5558 | 0.875059 | GTGCTAGACAAACCACCTGC | 59.125 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1595 | 5559 | 1.202758 | TGGTGCTAGACAAACCACCTG | 60.203 | 52.381 | 13.85 | 0.00 | 46.08 | 4.00 |
1596 | 5560 | 1.136828 | TGGTGCTAGACAAACCACCT | 58.863 | 50.000 | 13.85 | 0.00 | 46.08 | 4.00 |
1597 | 5561 | 2.200373 | ATGGTGCTAGACAAACCACC | 57.800 | 50.000 | 8.62 | 8.18 | 46.34 | 4.61 |
1609 | 5579 | 6.586082 | CGAGCAAAAGTTTATAAAATGGTGCT | 59.414 | 34.615 | 24.73 | 24.73 | 38.66 | 4.40 |
1615 | 5585 | 8.699749 | GTTGAAGCGAGCAAAAGTTTATAAAAT | 58.300 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
1621 | 5591 | 4.893424 | AGTTGAAGCGAGCAAAAGTTTA | 57.107 | 36.364 | 0.00 | 0.00 | 0.00 | 2.01 |
1623 | 5593 | 3.378427 | AGAAGTTGAAGCGAGCAAAAGTT | 59.622 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
1624 | 5594 | 2.945668 | AGAAGTTGAAGCGAGCAAAAGT | 59.054 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
1626 | 5596 | 5.238432 | TGATAAGAAGTTGAAGCGAGCAAAA | 59.762 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1630 | 5600 | 4.808364 | AGATGATAAGAAGTTGAAGCGAGC | 59.192 | 41.667 | 0.00 | 0.00 | 0.00 | 5.03 |
1634 | 5604 | 6.187125 | TGCAAGATGATAAGAAGTTGAAGC | 57.813 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
1653 | 5623 | 2.281139 | TCGTCCCATGCGTTGCAA | 60.281 | 55.556 | 0.00 | 0.00 | 43.62 | 4.08 |
1666 | 5636 | 2.029838 | AATGGGCATGTTCTCTCGTC | 57.970 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1667 | 5637 | 3.627395 | TTAATGGGCATGTTCTCTCGT | 57.373 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
1709 | 5683 | 4.904853 | AGGCCCCTCTTTCATTTACAAAAA | 59.095 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
1710 | 5684 | 4.488770 | AGGCCCCTCTTTCATTTACAAAA | 58.511 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
1711 | 5685 | 4.086457 | GAGGCCCCTCTTTCATTTACAAA | 58.914 | 43.478 | 0.00 | 0.00 | 39.80 | 2.83 |
1712 | 5686 | 3.563479 | GGAGGCCCCTCTTTCATTTACAA | 60.563 | 47.826 | 13.65 | 0.00 | 42.38 | 2.41 |
1713 | 5687 | 2.025321 | GGAGGCCCCTCTTTCATTTACA | 60.025 | 50.000 | 13.65 | 0.00 | 42.38 | 2.41 |
1714 | 5688 | 2.656002 | GGAGGCCCCTCTTTCATTTAC | 58.344 | 52.381 | 13.65 | 0.00 | 42.38 | 2.01 |
1728 | 5702 | 3.097162 | AAATCGGAGGGGGAGGCC | 61.097 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
1729 | 5703 | 0.763223 | TAGAAATCGGAGGGGGAGGC | 60.763 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1730 | 5704 | 2.031495 | ATAGAAATCGGAGGGGGAGG | 57.969 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1731 | 5705 | 5.562298 | TTTAATAGAAATCGGAGGGGGAG | 57.438 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1732 | 5706 | 7.636036 | TTATTTAATAGAAATCGGAGGGGGA | 57.364 | 36.000 | 0.00 | 0.00 | 0.00 | 4.81 |
1733 | 5707 | 7.722285 | TGTTTATTTAATAGAAATCGGAGGGGG | 59.278 | 37.037 | 0.00 | 0.00 | 0.00 | 5.40 |
1734 | 5708 | 8.685838 | TGTTTATTTAATAGAAATCGGAGGGG | 57.314 | 34.615 | 0.00 | 0.00 | 0.00 | 4.79 |
1749 | 5723 | 9.983024 | TCTCCCTGAACCATATTGTTTATTTAA | 57.017 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
1750 | 5724 | 9.983024 | TTCTCCCTGAACCATATTGTTTATTTA | 57.017 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
1751 | 5725 | 8.893563 | TTCTCCCTGAACCATATTGTTTATTT | 57.106 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
1752 | 5726 | 7.561356 | CCTTCTCCCTGAACCATATTGTTTATT | 59.439 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
1753 | 5727 | 7.062957 | CCTTCTCCCTGAACCATATTGTTTAT | 58.937 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
1754 | 5728 | 6.423182 | CCTTCTCCCTGAACCATATTGTTTA | 58.577 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
1755 | 5729 | 5.264395 | CCTTCTCCCTGAACCATATTGTTT | 58.736 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
1756 | 5730 | 4.860022 | CCTTCTCCCTGAACCATATTGTT | 58.140 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
1757 | 5731 | 3.372025 | GCCTTCTCCCTGAACCATATTGT | 60.372 | 47.826 | 0.00 | 0.00 | 0.00 | 2.71 |
1758 | 5732 | 3.217626 | GCCTTCTCCCTGAACCATATTG | 58.782 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1759 | 5733 | 2.852449 | TGCCTTCTCCCTGAACCATATT | 59.148 | 45.455 | 0.00 | 0.00 | 0.00 | 1.28 |
1760 | 5734 | 2.492025 | TGCCTTCTCCCTGAACCATAT | 58.508 | 47.619 | 0.00 | 0.00 | 0.00 | 1.78 |
1761 | 5735 | 1.965414 | TGCCTTCTCCCTGAACCATA | 58.035 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1762 | 5736 | 1.302907 | ATGCCTTCTCCCTGAACCAT | 58.697 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1763 | 5737 | 1.075601 | AATGCCTTCTCCCTGAACCA | 58.924 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1764 | 5738 | 1.821136 | CAAATGCCTTCTCCCTGAACC | 59.179 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
1765 | 5739 | 2.519013 | ACAAATGCCTTCTCCCTGAAC | 58.481 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
1766 | 5740 | 2.978156 | ACAAATGCCTTCTCCCTGAA | 57.022 | 45.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1767 | 5741 | 3.330701 | ACTTACAAATGCCTTCTCCCTGA | 59.669 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
1768 | 5742 | 3.690460 | ACTTACAAATGCCTTCTCCCTG | 58.310 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
1769 | 5743 | 4.388577 | AACTTACAAATGCCTTCTCCCT | 57.611 | 40.909 | 0.00 | 0.00 | 0.00 | 4.20 |
1770 | 5744 | 5.221441 | ACAAAACTTACAAATGCCTTCTCCC | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1771 | 5745 | 5.842907 | ACAAAACTTACAAATGCCTTCTCC | 58.157 | 37.500 | 0.00 | 0.00 | 0.00 | 3.71 |
1772 | 5746 | 6.142320 | CGAACAAAACTTACAAATGCCTTCTC | 59.858 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
1773 | 5747 | 5.977129 | CGAACAAAACTTACAAATGCCTTCT | 59.023 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1774 | 5748 | 5.746721 | ACGAACAAAACTTACAAATGCCTTC | 59.253 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1788 | 5762 | 3.301771 | GCAGCACAATGAACGAACAAAAC | 60.302 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
1792 | 5766 | 1.264020 | GAGCAGCACAATGAACGAACA | 59.736 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
1793 | 5767 | 1.264020 | TGAGCAGCACAATGAACGAAC | 59.736 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
1795 | 5769 | 1.150827 | CTGAGCAGCACAATGAACGA | 58.849 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1796 | 5770 | 1.150827 | TCTGAGCAGCACAATGAACG | 58.849 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1797 | 5771 | 3.198863 | CTTCTGAGCAGCACAATGAAC | 57.801 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
1812 | 5830 | 3.588955 | GGCCTAACCAATTTTGCTTCTG | 58.411 | 45.455 | 0.00 | 0.00 | 38.86 | 3.02 |
1836 | 5854 | 5.414454 | GGCACAGATATAAATAATTCGGGCA | 59.586 | 40.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1849 | 5871 | 4.634004 | CCAACAGAAAACGGCACAGATATA | 59.366 | 41.667 | 0.00 | 0.00 | 0.00 | 0.86 |
1852 | 5874 | 1.608590 | CCAACAGAAAACGGCACAGAT | 59.391 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
1856 | 5878 | 2.356695 | AGTAACCAACAGAAAACGGCAC | 59.643 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
1858 | 5880 | 2.857104 | GCAGTAACCAACAGAAAACGGC | 60.857 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
1869 | 5891 | 7.050970 | AGATATAGTTCATCGCAGTAACCAA | 57.949 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1876 | 5898 | 7.094508 | AGTCCATAGATATAGTTCATCGCAG | 57.905 | 40.000 | 0.00 | 0.00 | 0.00 | 5.18 |
1877 | 5899 | 7.176690 | TCAAGTCCATAGATATAGTTCATCGCA | 59.823 | 37.037 | 0.00 | 0.00 | 0.00 | 5.10 |
1880 | 5902 | 7.971168 | CGGTCAAGTCCATAGATATAGTTCATC | 59.029 | 40.741 | 0.00 | 0.00 | 0.00 | 2.92 |
1906 | 5928 | 3.282021 | TGTCTCAGGCAAAGCAATATCC | 58.718 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
2014 | 6039 | 1.221466 | TGCTCTATGTAATGCCGCGC | 61.221 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 |
2143 | 6185 | 2.604046 | AGTGAGATCAATACCCGCAC | 57.396 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2146 | 6188 | 9.534565 | CCATAATATAAGTGAGATCAATACCCG | 57.465 | 37.037 | 0.00 | 0.00 | 0.00 | 5.28 |
2193 | 6235 | 4.177026 | AGAACTGTGATATCAACTCGTGC | 58.823 | 43.478 | 7.07 | 1.32 | 0.00 | 5.34 |
2254 | 6296 | 7.050970 | TCTAAAGCTGTGAACAGAGAAGTAA | 57.949 | 36.000 | 14.58 | 0.00 | 46.59 | 2.24 |
2295 | 6338 | 7.871853 | TCAGTGTTAGAAAAACAAGGCTTATC | 58.128 | 34.615 | 0.00 | 0.00 | 31.20 | 1.75 |
2300 | 6343 | 5.831997 | ACATCAGTGTTAGAAAAACAAGGC | 58.168 | 37.500 | 0.00 | 0.00 | 34.01 | 4.35 |
2394 | 6495 | 3.634910 | ACCAAGTTTCAAGCCATACGTTT | 59.365 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
2460 | 6561 | 5.584649 | GCTACAGAATAATGGTGTTGCTACA | 59.415 | 40.000 | 0.00 | 0.00 | 39.09 | 2.74 |
2461 | 6562 | 5.817816 | AGCTACAGAATAATGGTGTTGCTAC | 59.182 | 40.000 | 8.54 | 0.00 | 46.68 | 3.58 |
2494 | 6829 | 5.528690 | AGTGTACATGGCAGTGCAAATATAG | 59.471 | 40.000 | 18.61 | 1.58 | 35.90 | 1.31 |
2507 | 6842 | 1.202382 | GGTCGACCTAGTGTACATGGC | 60.202 | 57.143 | 27.64 | 0.00 | 0.00 | 4.40 |
2608 | 6958 | 6.239402 | CCTGATTCCTTTTGTCTTTGACCATT | 60.239 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
2617 | 6967 | 3.795688 | TCAGCCTGATTCCTTTTGTCT | 57.204 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
2733 | 7083 | 2.093869 | GTGGTAAACTATGGCCTCGACA | 60.094 | 50.000 | 3.32 | 0.00 | 0.00 | 4.35 |
2748 | 7098 | 1.195442 | TCAGGCCGTGGATGTGGTAA | 61.195 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2814 | 7164 | 0.988832 | TTGTATGTTCCGGGGAAGCT | 59.011 | 50.000 | 0.00 | 0.00 | 34.49 | 3.74 |
2883 | 7233 | 3.509137 | GAACCGTGCTGTCCGTCCA | 62.509 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
2994 | 7344 | 1.336887 | GCGTCCTGCTCTCTTGTTACA | 60.337 | 52.381 | 0.00 | 0.00 | 41.73 | 2.41 |
2998 | 7348 | 2.259818 | CGCGTCCTGCTCTCTTGT | 59.740 | 61.111 | 0.00 | 0.00 | 43.27 | 3.16 |
3057 | 7407 | 6.170675 | ACGCAATCTGTCTCTTCATTTAAC | 57.829 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
3078 | 7428 | 0.859232 | GCTATATCACACCGCCAACG | 59.141 | 55.000 | 0.00 | 0.00 | 39.67 | 4.10 |
3115 | 7467 | 0.530650 | ACACAACACCAGCAGAGTCG | 60.531 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3118 | 7470 | 1.334869 | GGAAACACAACACCAGCAGAG | 59.665 | 52.381 | 0.00 | 0.00 | 0.00 | 3.35 |
3142 | 7494 | 3.425892 | CGTGACCTACAGCTACACTACAC | 60.426 | 52.174 | 0.00 | 0.00 | 0.00 | 2.90 |
3147 | 7499 | 1.135460 | GTCCGTGACCTACAGCTACAC | 60.135 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 |
3148 | 7500 | 1.171308 | GTCCGTGACCTACAGCTACA | 58.829 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3149 | 7501 | 1.171308 | TGTCCGTGACCTACAGCTAC | 58.829 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3150 | 7502 | 2.022195 | GATGTCCGTGACCTACAGCTA | 58.978 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
3151 | 7503 | 0.818296 | GATGTCCGTGACCTACAGCT | 59.182 | 55.000 | 2.23 | 0.00 | 0.00 | 4.24 |
3152 | 7504 | 0.525668 | CGATGTCCGTGACCTACAGC | 60.526 | 60.000 | 2.23 | 0.00 | 0.00 | 4.40 |
3243 | 7595 | 8.397906 | CAACCAACATATATTACAGTTCACAGG | 58.602 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
3303 | 7655 | 9.528489 | AGGTGAAACAATGGTTATTACTAACAT | 57.472 | 29.630 | 5.46 | 0.00 | 37.87 | 2.71 |
3355 | 7707 | 7.370383 | AGTGATGTTACCAAGTGCTATTTTTG | 58.630 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
3370 | 7722 | 7.152645 | TCCTCTGTTTGTAGAAGTGATGTTAC | 58.847 | 38.462 | 0.00 | 0.00 | 0.00 | 2.50 |
3373 | 7725 | 5.788450 | CTCCTCTGTTTGTAGAAGTGATGT | 58.212 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
3396 | 7750 | 2.818130 | TTTTCTTGTTGGGCAGATGC | 57.182 | 45.000 | 0.00 | 0.00 | 41.14 | 3.91 |
3420 | 7774 | 7.041167 | CCTTCTGTGTTTCACATGTAAAGATGA | 60.041 | 37.037 | 0.00 | 0.00 | 43.71 | 2.92 |
3425 | 7779 | 6.151985 | ACAACCTTCTGTGTTTCACATGTAAA | 59.848 | 34.615 | 0.00 | 0.00 | 43.71 | 2.01 |
3428 | 7782 | 4.016444 | ACAACCTTCTGTGTTTCACATGT | 58.984 | 39.130 | 0.00 | 0.00 | 43.71 | 3.21 |
3504 | 7858 | 2.176273 | CAAATCGCTGAGGAGCCGG | 61.176 | 63.158 | 0.00 | 0.00 | 42.91 | 6.13 |
3533 | 7887 | 3.932580 | AAGCGCGCAGATCCAACGA | 62.933 | 57.895 | 35.10 | 0.00 | 0.00 | 3.85 |
3537 | 7891 | 2.175621 | CATCAAGCGCGCAGATCCA | 61.176 | 57.895 | 35.10 | 10.84 | 0.00 | 3.41 |
3545 | 7899 | 0.575859 | CTCAGATCACATCAAGCGCG | 59.424 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 |
3546 | 7900 | 0.304098 | GCTCAGATCACATCAAGCGC | 59.696 | 55.000 | 0.00 | 0.00 | 32.97 | 5.92 |
3547 | 7901 | 0.935898 | GGCTCAGATCACATCAAGCG | 59.064 | 55.000 | 0.00 | 0.00 | 39.68 | 4.68 |
3556 | 7910 | 1.786049 | CGATCCGACGGCTCAGATCA | 61.786 | 60.000 | 17.26 | 0.00 | 35.85 | 2.92 |
3942 | 8347 | 2.736826 | CGCCTTCCTCCTTCCCTCC | 61.737 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
4111 | 8522 | 0.388659 | GAGACGATGAGGAGCAGCAT | 59.611 | 55.000 | 0.00 | 0.00 | 30.64 | 3.79 |
4112 | 8523 | 1.670949 | GGAGACGATGAGGAGCAGCA | 61.671 | 60.000 | 0.00 | 0.00 | 30.64 | 4.41 |
4146 | 8557 | 3.579066 | GGAGACGATTAGGAGCAGC | 57.421 | 57.895 | 0.00 | 0.00 | 0.00 | 5.25 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.