Multiple sequence alignment - TraesCS5B01G469500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G469500 | chr5B | 100.000 | 5386 | 0 | 0 | 1 | 5386 | 643166771 | 643172156 | 0.000000e+00 | 9947 |
1 | TraesCS5B01G469500 | chr5B | 94.000 | 50 | 2 | 1 | 4841 | 4890 | 643171562 | 643171610 | 2.080000e-09 | 75 |
2 | TraesCS5B01G469500 | chr5B | 94.000 | 50 | 2 | 1 | 4792 | 4840 | 643171611 | 643171660 | 2.080000e-09 | 75 |
3 | TraesCS5B01G469500 | chr5A | 92.478 | 3124 | 128 | 42 | 911 | 3990 | 640600183 | 640603243 | 0.000000e+00 | 4368 |
4 | TraesCS5B01G469500 | chr5A | 95.712 | 793 | 26 | 4 | 4053 | 4840 | 640603273 | 640604062 | 0.000000e+00 | 1269 |
5 | TraesCS5B01G469500 | chr5A | 84.099 | 805 | 86 | 23 | 1 | 780 | 640598969 | 640599756 | 0.000000e+00 | 739 |
6 | TraesCS5B01G469500 | chr5A | 83.063 | 555 | 50 | 22 | 4840 | 5386 | 640604013 | 640604531 | 1.060000e-126 | 464 |
7 | TraesCS5B01G469500 | chr5D | 91.801 | 1732 | 83 | 30 | 1 | 1709 | 512199261 | 512200956 | 0.000000e+00 | 2357 |
8 | TraesCS5B01G469500 | chr5D | 87.848 | 1399 | 97 | 30 | 1746 | 3101 | 512201116 | 512202484 | 0.000000e+00 | 1574 |
9 | TraesCS5B01G469500 | chr5D | 95.839 | 793 | 24 | 6 | 4053 | 4840 | 512203419 | 512204207 | 0.000000e+00 | 1273 |
10 | TraesCS5B01G469500 | chr5D | 83.971 | 418 | 29 | 20 | 3132 | 3517 | 512202569 | 512202980 | 3.070000e-97 | 366 |
11 | TraesCS5B01G469500 | chr5D | 81.651 | 436 | 44 | 18 | 4840 | 5268 | 512204157 | 512204563 | 4.020000e-86 | 329 |
12 | TraesCS5B01G469500 | chr5D | 94.690 | 113 | 4 | 2 | 4954 | 5064 | 56450152 | 56450264 | 1.990000e-39 | 174 |
13 | TraesCS5B01G469500 | chr1A | 96.190 | 105 | 2 | 2 | 4959 | 5062 | 554280633 | 554280530 | 2.580000e-38 | 171 |
14 | TraesCS5B01G469500 | chr1A | 96.190 | 105 | 2 | 2 | 4959 | 5062 | 554293060 | 554293163 | 2.580000e-38 | 171 |
15 | TraesCS5B01G469500 | chr6B | 94.545 | 110 | 5 | 1 | 4954 | 5062 | 693317639 | 693317530 | 9.280000e-38 | 169 |
16 | TraesCS5B01G469500 | chr1B | 96.154 | 104 | 2 | 2 | 4959 | 5061 | 637536974 | 637536872 | 9.280000e-38 | 169 |
17 | TraesCS5B01G469500 | chr6D | 92.982 | 114 | 5 | 3 | 4954 | 5064 | 455911919 | 455911806 | 4.320000e-36 | 163 |
18 | TraesCS5B01G469500 | chr3A | 94.393 | 107 | 4 | 2 | 4951 | 5055 | 744061689 | 744061795 | 4.320000e-36 | 163 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G469500 | chr5B | 643166771 | 643172156 | 5385 | False | 3365.666667 | 9947 | 96.000 | 1 | 5386 | 3 | chr5B.!!$F1 | 5385 |
1 | TraesCS5B01G469500 | chr5A | 640598969 | 640604531 | 5562 | False | 1710.000000 | 4368 | 88.838 | 1 | 5386 | 4 | chr5A.!!$F1 | 5385 |
2 | TraesCS5B01G469500 | chr5D | 512199261 | 512204563 | 5302 | False | 1179.800000 | 2357 | 88.222 | 1 | 5268 | 5 | chr5D.!!$F2 | 5267 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
435 | 452 | 0.169672 | CGACCGACACCTACGACATT | 59.830 | 55.000 | 0.0 | 0.0 | 0.00 | 2.71 | F |
1317 | 1673 | 0.316204 | GCTTGCTGCTTGTGGTCATT | 59.684 | 50.000 | 0.0 | 0.0 | 38.95 | 2.57 | F |
1602 | 1971 | 0.179092 | CTCTGATGTCGCTGATGGCA | 60.179 | 55.000 | 0.0 | 0.0 | 41.91 | 4.92 | F |
2659 | 3195 | 0.031994 | GGCACAAACGAAATGCACCT | 59.968 | 50.000 | 0.0 | 0.0 | 41.27 | 4.00 | F |
3437 | 4050 | 1.068250 | GAGCATACCTGAGCCGTCC | 59.932 | 63.158 | 0.0 | 0.0 | 0.00 | 4.79 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1461 | 1823 | 0.107831 | GTAACCACCTGTGACCAGCA | 59.892 | 55.0 | 0.00 | 0.00 | 37.38 | 4.41 | R |
2622 | 3158 | 0.390860 | CCCCAATCAGCCTCGACTAG | 59.609 | 60.0 | 0.00 | 0.00 | 0.00 | 2.57 | R |
2916 | 3456 | 0.978146 | CGTTCTCCCATCCTCCCTGT | 60.978 | 60.0 | 0.00 | 0.00 | 0.00 | 4.00 | R |
3702 | 4375 | 0.392327 | CCACACACACACCTCACACA | 60.392 | 55.0 | 0.00 | 0.00 | 0.00 | 3.72 | R |
5333 | 6046 | 0.034476 | TGTCTTGAGCTCAGCCACTG | 59.966 | 55.0 | 17.43 | 4.78 | 0.00 | 3.66 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
40 | 41 | 6.734104 | TGCATGGCCATTAATTTTGTTAAC | 57.266 | 33.333 | 17.92 | 0.00 | 0.00 | 2.01 |
96 | 97 | 2.372837 | AGTTGGTAAGTAGCCGGGAAAA | 59.627 | 45.455 | 2.18 | 0.00 | 0.00 | 2.29 |
98 | 99 | 3.724732 | TGGTAAGTAGCCGGGAAAATT | 57.275 | 42.857 | 2.18 | 0.00 | 0.00 | 1.82 |
103 | 104 | 6.060136 | GGTAAGTAGCCGGGAAAATTCTAAT | 58.940 | 40.000 | 2.18 | 0.00 | 0.00 | 1.73 |
134 | 136 | 0.751277 | TGACACTTTGTGCACCCAGG | 60.751 | 55.000 | 15.69 | 3.94 | 36.98 | 4.45 |
189 | 192 | 2.760634 | TCGAAGCTTAGACCATTGCA | 57.239 | 45.000 | 5.03 | 0.00 | 0.00 | 4.08 |
196 | 199 | 2.743183 | GCTTAGACCATTGCATCCGACT | 60.743 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
245 | 252 | 3.553828 | TCGGTTCCATTATCAAGGGAC | 57.446 | 47.619 | 0.00 | 0.00 | 41.77 | 4.46 |
303 | 310 | 7.440856 | ACCCTATTTGCATAACAACAAAAAGTG | 59.559 | 33.333 | 0.00 | 0.00 | 39.09 | 3.16 |
322 | 329 | 5.836024 | AGTGAACCCCTAATTTACTCACA | 57.164 | 39.130 | 0.00 | 0.00 | 35.32 | 3.58 |
323 | 330 | 6.195600 | AGTGAACCCCTAATTTACTCACAA | 57.804 | 37.500 | 0.00 | 0.00 | 35.32 | 3.33 |
327 | 334 | 3.591977 | ACCCCTAATTTACTCACAAGCCT | 59.408 | 43.478 | 0.00 | 0.00 | 0.00 | 4.58 |
334 | 341 | 2.654749 | TACTCACAAGCCTCGTCATG | 57.345 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
384 | 391 | 0.958091 | CACCATTCTGCCGACCAAAA | 59.042 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
426 | 443 | 2.019984 | AGTTATACCTCGACCGACACC | 58.980 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
428 | 445 | 3.118261 | AGTTATACCTCGACCGACACCTA | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 3.08 |
433 | 450 | 1.293963 | CTCGACCGACACCTACGACA | 61.294 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
435 | 452 | 0.169672 | CGACCGACACCTACGACATT | 59.830 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
515 | 532 | 3.069443 | CCAAGACCAAGGCTAAAGCAAAA | 59.931 | 43.478 | 4.07 | 0.00 | 44.36 | 2.44 |
600 | 626 | 6.765989 | GGATAAAACAAACCAAAAGCTTTCCT | 59.234 | 34.615 | 13.10 | 0.00 | 0.00 | 3.36 |
603 | 629 | 7.987750 | AAAACAAACCAAAAGCTTTCCTTTA | 57.012 | 28.000 | 13.10 | 0.00 | 42.82 | 1.85 |
632 | 666 | 6.867519 | AGAAAAGGAGAAGAAACCCAAAAA | 57.132 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
665 | 702 | 4.641645 | CCAAGCCAGCACGACCCA | 62.642 | 66.667 | 0.00 | 0.00 | 0.00 | 4.51 |
694 | 731 | 4.877619 | TGCGCCCGACCCAAAACA | 62.878 | 61.111 | 4.18 | 0.00 | 0.00 | 2.83 |
1228 | 1583 | 1.672363 | CGTATGTGATGCTGGCATTGT | 59.328 | 47.619 | 9.52 | 0.12 | 36.70 | 2.71 |
1271 | 1626 | 4.389576 | GCTGGAGTTTGCGCCGTG | 62.390 | 66.667 | 4.18 | 0.00 | 37.39 | 4.94 |
1317 | 1673 | 0.316204 | GCTTGCTGCTTGTGGTCATT | 59.684 | 50.000 | 0.00 | 0.00 | 38.95 | 2.57 |
1318 | 1674 | 1.541147 | GCTTGCTGCTTGTGGTCATTA | 59.459 | 47.619 | 0.00 | 0.00 | 38.95 | 1.90 |
1491 | 1860 | 4.020543 | ACAGGTGGTTACAACACACAAAT | 58.979 | 39.130 | 12.59 | 0.94 | 40.54 | 2.32 |
1602 | 1971 | 0.179092 | CTCTGATGTCGCTGATGGCA | 60.179 | 55.000 | 0.00 | 0.00 | 41.91 | 4.92 |
1620 | 1989 | 7.147312 | TGATGGCAAAGTTTTGATGACTTTAG | 58.853 | 34.615 | 8.70 | 0.00 | 43.44 | 1.85 |
1621 | 1990 | 6.463995 | TGGCAAAGTTTTGATGACTTTAGT | 57.536 | 33.333 | 8.70 | 0.00 | 43.44 | 2.24 |
1652 | 2021 | 2.490509 | TCTGATGCACATGCCTTTCAAG | 59.509 | 45.455 | 0.49 | 0.00 | 41.18 | 3.02 |
1679 | 2048 | 9.168451 | TCATTATGCGAAGTTTGTAAGGAATAA | 57.832 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
1709 | 2078 | 5.511234 | AACTGGCATCTGAAATATGAAGC | 57.489 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
1718 | 2218 | 9.343103 | GCATCTGAAATATGAAGCTATCATTTG | 57.657 | 33.333 | 14.02 | 0.00 | 46.85 | 2.32 |
1743 | 2243 | 6.161855 | TGGCAATACTACTTGGATGTAGAG | 57.838 | 41.667 | 8.43 | 0.00 | 41.63 | 2.43 |
1744 | 2244 | 5.661312 | TGGCAATACTACTTGGATGTAGAGT | 59.339 | 40.000 | 8.43 | 0.00 | 41.63 | 3.24 |
1745 | 2245 | 6.156256 | TGGCAATACTACTTGGATGTAGAGTT | 59.844 | 38.462 | 8.43 | 1.22 | 41.63 | 3.01 |
1746 | 2246 | 6.480320 | GGCAATACTACTTGGATGTAGAGTTG | 59.520 | 42.308 | 8.43 | 11.61 | 41.63 | 3.16 |
1747 | 2247 | 7.042335 | GCAATACTACTTGGATGTAGAGTTGT | 58.958 | 38.462 | 8.43 | 0.00 | 41.63 | 3.32 |
1748 | 2248 | 8.195436 | GCAATACTACTTGGATGTAGAGTTGTA | 58.805 | 37.037 | 8.43 | 0.00 | 41.63 | 2.41 |
1749 | 2249 | 9.737427 | CAATACTACTTGGATGTAGAGTTGTAG | 57.263 | 37.037 | 8.43 | 0.00 | 41.63 | 2.74 |
1750 | 2250 | 9.696572 | AATACTACTTGGATGTAGAGTTGTAGA | 57.303 | 33.333 | 8.43 | 0.00 | 41.63 | 2.59 |
1767 | 2267 | 3.192001 | TGTAGACCGCGTTTAGACATTCT | 59.808 | 43.478 | 4.92 | 0.00 | 0.00 | 2.40 |
1917 | 2418 | 5.009410 | GGAAAGCACCTTCCATGAATATGAG | 59.991 | 44.000 | 0.00 | 0.00 | 43.84 | 2.90 |
2066 | 2575 | 8.827832 | ATTTCTTTTGGTGATTCCTATGATGA | 57.172 | 30.769 | 0.00 | 0.00 | 37.07 | 2.92 |
2067 | 2576 | 7.870509 | TTCTTTTGGTGATTCCTATGATGAG | 57.129 | 36.000 | 0.00 | 0.00 | 37.07 | 2.90 |
2068 | 2577 | 7.199167 | TCTTTTGGTGATTCCTATGATGAGA | 57.801 | 36.000 | 0.00 | 0.00 | 37.07 | 3.27 |
2069 | 2578 | 7.278135 | TCTTTTGGTGATTCCTATGATGAGAG | 58.722 | 38.462 | 0.00 | 0.00 | 37.07 | 3.20 |
2070 | 2579 | 6.566079 | TTTGGTGATTCCTATGATGAGAGT | 57.434 | 37.500 | 0.00 | 0.00 | 37.07 | 3.24 |
2128 | 2637 | 2.789409 | ATCTTTGTAGACTGTGGGGC | 57.211 | 50.000 | 0.00 | 0.00 | 31.99 | 5.80 |
2580 | 3116 | 4.141981 | TGGTCATGCAACAAAGTTGTCAAT | 60.142 | 37.500 | 11.09 | 1.62 | 41.31 | 2.57 |
2581 | 3117 | 4.445385 | GGTCATGCAACAAAGTTGTCAATC | 59.555 | 41.667 | 11.09 | 5.53 | 41.31 | 2.67 |
2582 | 3118 | 5.042593 | GTCATGCAACAAAGTTGTCAATCA | 58.957 | 37.500 | 11.09 | 1.59 | 41.31 | 2.57 |
2583 | 3119 | 5.693104 | GTCATGCAACAAAGTTGTCAATCAT | 59.307 | 36.000 | 11.09 | 3.64 | 41.31 | 2.45 |
2584 | 3120 | 5.692654 | TCATGCAACAAAGTTGTCAATCATG | 59.307 | 36.000 | 15.22 | 15.22 | 41.31 | 3.07 |
2654 | 3190 | 2.288702 | TGATTGGGGCACAAACGAAATG | 60.289 | 45.455 | 6.13 | 0.00 | 43.46 | 2.32 |
2659 | 3195 | 0.031994 | GGCACAAACGAAATGCACCT | 59.968 | 50.000 | 0.00 | 0.00 | 41.27 | 4.00 |
2730 | 3266 | 9.294030 | GTAATGAATTTCTCTGCAAGTTTATGG | 57.706 | 33.333 | 0.00 | 0.00 | 33.76 | 2.74 |
2841 | 3379 | 8.686334 | AGTGTATTTTCTCTTTCATTGTGTGTT | 58.314 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
2916 | 3456 | 6.832520 | TTGTTATTTTGCTGCTTCCTATCA | 57.167 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
3101 | 3649 | 4.535526 | TGTATGCTACAAGCTGAGACAA | 57.464 | 40.909 | 0.03 | 0.00 | 42.97 | 3.18 |
3268 | 3880 | 2.472695 | TAGTGGCATCCAGTTGTGAC | 57.527 | 50.000 | 0.00 | 0.00 | 38.30 | 3.67 |
3306 | 3918 | 5.293560 | GCTAGTTATCTCACTGCTTTAGGG | 58.706 | 45.833 | 0.00 | 0.00 | 0.00 | 3.53 |
3360 | 3972 | 3.568430 | GGTTTATATGCTTTTCCCCCTCG | 59.432 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
3437 | 4050 | 1.068250 | GAGCATACCTGAGCCGTCC | 59.932 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
3480 | 4114 | 4.604843 | TTGTATACCGTACTCACAGACG | 57.395 | 45.455 | 0.00 | 0.00 | 38.79 | 4.18 |
3567 | 4240 | 6.687105 | GCTCTTTGTAAATTAACATACTGGCG | 59.313 | 38.462 | 2.30 | 0.00 | 0.00 | 5.69 |
3660 | 4333 | 5.804692 | TTAGTTCACACTTTGCTCGAAAA | 57.195 | 34.783 | 0.00 | 0.00 | 34.06 | 2.29 |
3696 | 4369 | 3.947196 | ACATTTCAGATGTGTGTGTGTGT | 59.053 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
3698 | 4371 | 1.298602 | TCAGATGTGTGTGTGTGTGC | 58.701 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
3700 | 4373 | 1.369209 | GATGTGTGTGTGTGTGCGC | 60.369 | 57.895 | 0.00 | 0.00 | 0.00 | 6.09 |
3702 | 4375 | 3.860125 | GTGTGTGTGTGTGCGCGT | 61.860 | 61.111 | 8.43 | 0.00 | 0.00 | 6.01 |
3708 | 4381 | 3.559344 | GTGTGTGCGCGTGTGTGA | 61.559 | 61.111 | 8.43 | 0.00 | 0.00 | 3.58 |
3710 | 4383 | 4.000557 | GTGTGCGCGTGTGTGAGG | 62.001 | 66.667 | 8.43 | 0.00 | 0.00 | 3.86 |
3711 | 4384 | 4.522689 | TGTGCGCGTGTGTGAGGT | 62.523 | 61.111 | 8.43 | 0.00 | 0.00 | 3.85 |
3712 | 4385 | 4.000557 | GTGCGCGTGTGTGAGGTG | 62.001 | 66.667 | 8.43 | 0.00 | 0.00 | 4.00 |
3713 | 4386 | 4.522689 | TGCGCGTGTGTGAGGTGT | 62.523 | 61.111 | 8.43 | 0.00 | 0.00 | 4.16 |
3714 | 4387 | 4.000557 | GCGCGTGTGTGAGGTGTG | 62.001 | 66.667 | 8.43 | 0.00 | 0.00 | 3.82 |
3715 | 4388 | 2.584970 | CGCGTGTGTGAGGTGTGT | 60.585 | 61.111 | 0.00 | 0.00 | 0.00 | 3.72 |
3716 | 4389 | 2.870341 | CGCGTGTGTGAGGTGTGTG | 61.870 | 63.158 | 0.00 | 0.00 | 0.00 | 3.82 |
3717 | 4390 | 1.813753 | GCGTGTGTGAGGTGTGTGT | 60.814 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
3718 | 4391 | 2.005995 | CGTGTGTGAGGTGTGTGTG | 58.994 | 57.895 | 0.00 | 0.00 | 0.00 | 3.82 |
3719 | 4392 | 0.739462 | CGTGTGTGAGGTGTGTGTGT | 60.739 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3720 | 4393 | 0.726827 | GTGTGTGAGGTGTGTGTGTG | 59.273 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3784 | 4457 | 3.708403 | TGACCAGCATCAGTGAAGAAT | 57.292 | 42.857 | 0.00 | 0.00 | 0.00 | 2.40 |
3891 | 4582 | 6.273730 | TCATAAGGGTTAGAACCTTTTCTGGA | 59.726 | 38.462 | 13.34 | 4.98 | 44.92 | 3.86 |
3893 | 4584 | 5.965486 | AAGGGTTAGAACCTTTTCTGGAAT | 58.035 | 37.500 | 11.16 | 0.00 | 44.92 | 3.01 |
3942 | 4633 | 9.190317 | GATATTAAACCTGTTTCCATCTTTCCT | 57.810 | 33.333 | 0.00 | 0.00 | 34.23 | 3.36 |
3984 | 4676 | 5.305139 | TGCAAGATCATTCATGAACTGTG | 57.695 | 39.130 | 11.07 | 5.72 | 38.73 | 3.66 |
3990 | 4682 | 6.111382 | AGATCATTCATGAACTGTGTACTGG | 58.889 | 40.000 | 11.07 | 0.00 | 38.32 | 4.00 |
3992 | 4684 | 5.863965 | TCATTCATGAACTGTGTACTGGAA | 58.136 | 37.500 | 11.07 | 0.00 | 33.08 | 3.53 |
3993 | 4685 | 6.475504 | TCATTCATGAACTGTGTACTGGAAT | 58.524 | 36.000 | 11.07 | 0.00 | 33.08 | 3.01 |
3995 | 4687 | 7.549134 | TCATTCATGAACTGTGTACTGGAATAC | 59.451 | 37.037 | 11.07 | 0.00 | 33.08 | 1.89 |
3998 | 4690 | 8.306313 | TCATGAACTGTGTACTGGAATACTAT | 57.694 | 34.615 | 0.00 | 0.00 | 0.00 | 2.12 |
3999 | 4691 | 9.416284 | TCATGAACTGTGTACTGGAATACTATA | 57.584 | 33.333 | 0.00 | 0.00 | 0.00 | 1.31 |
4000 | 4692 | 9.464714 | CATGAACTGTGTACTGGAATACTATAC | 57.535 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
4003 | 4695 | 7.024340 | ACTGTGTACTGGAATACTATACGTG | 57.976 | 40.000 | 0.00 | 0.00 | 0.00 | 4.49 |
4004 | 4696 | 6.825213 | ACTGTGTACTGGAATACTATACGTGA | 59.175 | 38.462 | 0.00 | 0.00 | 0.00 | 4.35 |
4005 | 4697 | 7.501559 | ACTGTGTACTGGAATACTATACGTGAT | 59.498 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
4006 | 4698 | 8.229253 | TGTGTACTGGAATACTATACGTGATT | 57.771 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
4007 | 4699 | 9.341078 | TGTGTACTGGAATACTATACGTGATTA | 57.659 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
4008 | 4700 | 9.823098 | GTGTACTGGAATACTATACGTGATTAG | 57.177 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
4011 | 4703 | 7.948357 | ACTGGAATACTATACGTGATTAGCAA | 58.052 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
4012 | 4704 | 8.082852 | ACTGGAATACTATACGTGATTAGCAAG | 58.917 | 37.037 | 0.00 | 0.00 | 0.00 | 4.01 |
4013 | 4705 | 8.173542 | TGGAATACTATACGTGATTAGCAAGA | 57.826 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
4014 | 4706 | 8.803235 | TGGAATACTATACGTGATTAGCAAGAT | 58.197 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
4015 | 4707 | 9.291664 | GGAATACTATACGTGATTAGCAAGATC | 57.708 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
4016 | 4708 | 9.841880 | GAATACTATACGTGATTAGCAAGATCA | 57.158 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
4023 | 4715 | 7.849804 | ACGTGATTAGCAAGATCATTTAACT | 57.150 | 32.000 | 0.00 | 0.00 | 36.07 | 2.24 |
4024 | 4716 | 8.268850 | ACGTGATTAGCAAGATCATTTAACTT | 57.731 | 30.769 | 0.00 | 0.00 | 36.07 | 2.66 |
4025 | 4717 | 8.177663 | ACGTGATTAGCAAGATCATTTAACTTG | 58.822 | 33.333 | 0.00 | 0.00 | 42.33 | 3.16 |
4035 | 4727 | 9.582431 | CAAGATCATTTAACTTGCAAGATCATT | 57.418 | 29.630 | 32.50 | 18.02 | 35.43 | 2.57 |
4036 | 4728 | 9.798994 | AAGATCATTTAACTTGCAAGATCATTC | 57.201 | 29.630 | 32.50 | 16.43 | 34.40 | 2.67 |
4037 | 4729 | 8.963725 | AGATCATTTAACTTGCAAGATCATTCA | 58.036 | 29.630 | 32.50 | 11.49 | 34.40 | 2.57 |
4038 | 4730 | 9.745880 | GATCATTTAACTTGCAAGATCATTCAT | 57.254 | 29.630 | 32.50 | 15.45 | 32.74 | 2.57 |
4039 | 4731 | 8.920509 | TCATTTAACTTGCAAGATCATTCATG | 57.079 | 30.769 | 32.50 | 20.73 | 0.00 | 3.07 |
4040 | 4732 | 8.741841 | TCATTTAACTTGCAAGATCATTCATGA | 58.258 | 29.630 | 32.50 | 22.29 | 41.70 | 3.07 |
4045 | 4737 | 7.876936 | ACTTGCAAGATCATTCATGATTACT | 57.123 | 32.000 | 32.50 | 0.70 | 46.84 | 2.24 |
4046 | 4738 | 8.969260 | ACTTGCAAGATCATTCATGATTACTA | 57.031 | 30.769 | 32.50 | 0.00 | 46.84 | 1.82 |
4047 | 4739 | 9.570468 | ACTTGCAAGATCATTCATGATTACTAT | 57.430 | 29.630 | 32.50 | 0.00 | 46.84 | 2.12 |
4050 | 4742 | 9.440773 | TGCAAGATCATTCATGATTACTATACC | 57.559 | 33.333 | 3.78 | 0.00 | 46.84 | 2.73 |
4051 | 4743 | 9.440773 | GCAAGATCATTCATGATTACTATACCA | 57.559 | 33.333 | 3.78 | 0.00 | 46.84 | 3.25 |
4081 | 4775 | 0.709992 | ATGCCCCCATTGTACTTGGT | 59.290 | 50.000 | 12.56 | 0.00 | 31.99 | 3.67 |
4292 | 4987 | 0.249699 | AAGCCACGTCACAATGTCGA | 60.250 | 50.000 | 1.48 | 0.00 | 33.41 | 4.20 |
4331 | 5026 | 1.294780 | CTTGCTGACGGGCTTCTCT | 59.705 | 57.895 | 0.00 | 0.00 | 0.00 | 3.10 |
4418 | 5113 | 0.108089 | TCCTCCTCTGTCGTCTCTCG | 60.108 | 60.000 | 0.00 | 0.00 | 41.41 | 4.04 |
4447 | 5142 | 0.539518 | GCCTTCTCCTCTGTTCTCCC | 59.460 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4616 | 5311 | 5.803020 | ATTTTAAGTGTCTGATTCTCGCC | 57.197 | 39.130 | 0.00 | 0.00 | 0.00 | 5.54 |
4671 | 5366 | 4.952262 | TTGATTTCTTGCTCCTGATTCG | 57.048 | 40.909 | 0.00 | 0.00 | 0.00 | 3.34 |
4757 | 5453 | 2.063979 | CCGGTGCCTCTGGATACCA | 61.064 | 63.158 | 0.00 | 0.00 | 45.09 | 3.25 |
4790 | 5489 | 8.889000 | CAACTGTATTTTAAGCAGTAAAACGAC | 58.111 | 33.333 | 7.31 | 8.88 | 42.94 | 4.34 |
4809 | 5508 | 9.880157 | AAAACGACTTAGCTGGAAGTATATAAA | 57.120 | 29.630 | 1.81 | 0.00 | 39.79 | 1.40 |
4829 | 5529 | 2.175878 | ACACTGGCTCATGAAGTGAC | 57.824 | 50.000 | 25.66 | 6.22 | 43.22 | 3.67 |
4834 | 5534 | 2.164422 | CTGGCTCATGAAGTGACGAGTA | 59.836 | 50.000 | 0.00 | 0.00 | 32.22 | 2.59 |
4835 | 5535 | 2.164422 | TGGCTCATGAAGTGACGAGTAG | 59.836 | 50.000 | 0.00 | 0.00 | 32.22 | 2.57 |
4836 | 5536 | 2.164624 | GGCTCATGAAGTGACGAGTAGT | 59.835 | 50.000 | 0.00 | 0.00 | 32.22 | 2.73 |
4848 | 5548 | 4.698583 | GACGAGTAGTCTTTTAGCTGGA | 57.301 | 45.455 | 0.00 | 0.00 | 46.13 | 3.86 |
4849 | 5549 | 5.056894 | GACGAGTAGTCTTTTAGCTGGAA | 57.943 | 43.478 | 0.00 | 0.00 | 46.13 | 3.53 |
4850 | 5550 | 5.061920 | ACGAGTAGTCTTTTAGCTGGAAG | 57.938 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
4851 | 5551 | 4.523558 | ACGAGTAGTCTTTTAGCTGGAAGT | 59.476 | 41.667 | 0.00 | 0.00 | 35.30 | 3.01 |
4852 | 5552 | 5.709164 | ACGAGTAGTCTTTTAGCTGGAAGTA | 59.291 | 40.000 | 0.00 | 0.00 | 35.30 | 2.24 |
4853 | 5553 | 6.377712 | ACGAGTAGTCTTTTAGCTGGAAGTAT | 59.622 | 38.462 | 0.00 | 0.00 | 35.30 | 2.12 |
4854 | 5554 | 7.555554 | ACGAGTAGTCTTTTAGCTGGAAGTATA | 59.444 | 37.037 | 0.00 | 0.00 | 35.30 | 1.47 |
4855 | 5555 | 8.569641 | CGAGTAGTCTTTTAGCTGGAAGTATAT | 58.430 | 37.037 | 0.00 | 0.00 | 35.30 | 0.86 |
4865 | 5565 | 8.958119 | TTAGCTGGAAGTATATAAAACACTGG | 57.042 | 34.615 | 0.00 | 0.00 | 35.30 | 4.00 |
4866 | 5566 | 5.823045 | AGCTGGAAGTATATAAAACACTGGC | 59.177 | 40.000 | 0.00 | 0.00 | 35.30 | 4.85 |
4867 | 5567 | 5.823045 | GCTGGAAGTATATAAAACACTGGCT | 59.177 | 40.000 | 0.00 | 0.00 | 35.30 | 4.75 |
4868 | 5568 | 6.017852 | GCTGGAAGTATATAAAACACTGGCTC | 60.018 | 42.308 | 0.00 | 0.00 | 35.30 | 4.70 |
4869 | 5569 | 6.953101 | TGGAAGTATATAAAACACTGGCTCA | 58.047 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4870 | 5570 | 7.573710 | TGGAAGTATATAAAACACTGGCTCAT | 58.426 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
4871 | 5571 | 7.498900 | TGGAAGTATATAAAACACTGGCTCATG | 59.501 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
4872 | 5572 | 7.715249 | GGAAGTATATAAAACACTGGCTCATGA | 59.285 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
4873 | 5573 | 9.109393 | GAAGTATATAAAACACTGGCTCATGAA | 57.891 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
4874 | 5574 | 8.668510 | AGTATATAAAACACTGGCTCATGAAG | 57.331 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
4875 | 5575 | 8.267894 | AGTATATAAAACACTGGCTCATGAAGT | 58.732 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
4876 | 5576 | 3.996150 | AAAACACTGGCTCATGAAGTG | 57.004 | 42.857 | 19.81 | 19.81 | 45.46 | 3.16 |
4877 | 5577 | 2.936919 | AACACTGGCTCATGAAGTGA | 57.063 | 45.000 | 25.66 | 0.00 | 43.22 | 3.41 |
4878 | 5578 | 3.430042 | AACACTGGCTCATGAAGTGAT | 57.570 | 42.857 | 25.66 | 15.34 | 43.22 | 3.06 |
4879 | 5579 | 2.983229 | ACACTGGCTCATGAAGTGATC | 58.017 | 47.619 | 25.66 | 2.40 | 43.22 | 2.92 |
4880 | 5580 | 2.303890 | ACACTGGCTCATGAAGTGATCA | 59.696 | 45.455 | 25.66 | 0.00 | 43.22 | 2.92 |
4881 | 5581 | 2.937149 | CACTGGCTCATGAAGTGATCAG | 59.063 | 50.000 | 17.54 | 10.96 | 43.22 | 2.90 |
4882 | 5582 | 2.570752 | ACTGGCTCATGAAGTGATCAGT | 59.429 | 45.455 | 0.00 | 0.00 | 42.53 | 3.41 |
4883 | 5583 | 3.771479 | ACTGGCTCATGAAGTGATCAGTA | 59.229 | 43.478 | 2.79 | 0.00 | 43.33 | 2.74 |
4890 | 5590 | 6.035866 | GCTCATGAAGTGATCAGTAAGTCTTG | 59.964 | 42.308 | 2.79 | 6.83 | 42.53 | 3.02 |
4953 | 5656 | 5.897050 | ACAAGAAAAAGAAATTACACGGCA | 58.103 | 33.333 | 0.00 | 0.00 | 0.00 | 5.69 |
4954 | 5657 | 6.334202 | ACAAGAAAAAGAAATTACACGGCAA | 58.666 | 32.000 | 0.00 | 0.00 | 0.00 | 4.52 |
4955 | 5658 | 6.814146 | ACAAGAAAAAGAAATTACACGGCAAA | 59.186 | 30.769 | 0.00 | 0.00 | 0.00 | 3.68 |
4956 | 5659 | 7.494298 | ACAAGAAAAAGAAATTACACGGCAAAT | 59.506 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
4957 | 5660 | 8.334632 | CAAGAAAAAGAAATTACACGGCAAATT | 58.665 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
4958 | 5661 | 9.535878 | AAGAAAAAGAAATTACACGGCAAATTA | 57.464 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
5057 | 5763 | 4.966787 | GCGCCACCACCCCTTTGA | 62.967 | 66.667 | 0.00 | 0.00 | 0.00 | 2.69 |
5062 | 5768 | 1.256812 | CCACCACCCCTTTGATGTTC | 58.743 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5066 | 5772 | 3.758554 | CACCACCCCTTTGATGTTCTAAG | 59.241 | 47.826 | 0.00 | 0.00 | 0.00 | 2.18 |
5074 | 5780 | 7.995488 | ACCCCTTTGATGTTCTAAGAGATATTG | 59.005 | 37.037 | 1.14 | 0.00 | 32.27 | 1.90 |
5075 | 5781 | 7.995488 | CCCCTTTGATGTTCTAAGAGATATTGT | 59.005 | 37.037 | 1.14 | 0.00 | 32.27 | 2.71 |
5097 | 5807 | 7.669438 | TGTAAACTAATTATGACGAGCGTAC | 57.331 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5120 | 5830 | 9.509855 | GTACTGTGATCTGTAGACTATTTTCAG | 57.490 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
5140 | 5850 | 4.811024 | TCAGCCTAAAACTCGCATCTATTG | 59.189 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
5173 | 5883 | 6.723131 | GGGGACGCATCTAGTATTTTAATC | 57.277 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
5213 | 5926 | 8.630054 | GATCAAGAGATCCTACAGTATACAGT | 57.370 | 38.462 | 5.50 | 5.86 | 43.97 | 3.55 |
5254 | 5967 | 8.357402 | ACTGGACATAAAAATGAACCTAAACAC | 58.643 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
5267 | 5980 | 8.603898 | TGAACCTAAACACAGAGGAGATTATA | 57.396 | 34.615 | 0.00 | 0.00 | 36.61 | 0.98 |
5268 | 5981 | 9.213777 | TGAACCTAAACACAGAGGAGATTATAT | 57.786 | 33.333 | 0.00 | 0.00 | 36.61 | 0.86 |
5295 | 6008 | 8.574251 | TTAAAATTCTTACTGAAGCCATAGCA | 57.426 | 30.769 | 0.00 | 0.00 | 43.56 | 3.49 |
5299 | 6012 | 5.165961 | TCTTACTGAAGCCATAGCAAACT | 57.834 | 39.130 | 0.00 | 0.00 | 43.56 | 2.66 |
5314 | 6027 | 2.221055 | GCAAACTCGTCATCGTTTCACT | 59.779 | 45.455 | 0.00 | 0.00 | 38.33 | 3.41 |
5322 | 6035 | 3.486108 | CGTCATCGTTTCACTACCATAGC | 59.514 | 47.826 | 0.00 | 0.00 | 0.00 | 2.97 |
5332 | 6045 | 4.290093 | TCACTACCATAGCTCTCACCAAT | 58.710 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
5333 | 6046 | 4.342378 | TCACTACCATAGCTCTCACCAATC | 59.658 | 45.833 | 0.00 | 0.00 | 0.00 | 2.67 |
5334 | 6047 | 4.100035 | CACTACCATAGCTCTCACCAATCA | 59.900 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
5335 | 6048 | 3.834489 | ACCATAGCTCTCACCAATCAG | 57.166 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
5336 | 6049 | 3.110705 | ACCATAGCTCTCACCAATCAGT | 58.889 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
5337 | 6050 | 3.118482 | ACCATAGCTCTCACCAATCAGTG | 60.118 | 47.826 | 0.00 | 0.00 | 39.20 | 3.66 |
5356 | 6069 | 1.072806 | TGGCTGAGCTCAAGACAATGT | 59.927 | 47.619 | 18.85 | 0.00 | 0.00 | 2.71 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
103 | 104 | 6.934083 | TGCACAAAGTGTCAGAGTTCATAATA | 59.066 | 34.615 | 0.00 | 0.00 | 35.75 | 0.98 |
114 | 115 | 0.664761 | CTGGGTGCACAAAGTGTCAG | 59.335 | 55.000 | 20.43 | 9.69 | 35.75 | 3.51 |
134 | 136 | 1.066430 | TGGCGGACTCAGGTTTATCAC | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
211 | 218 | 7.452880 | AATGGAACCGATATAATGTTGGATG | 57.547 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
221 | 228 | 6.499000 | TGTCCCTTGATAATGGAACCGATATA | 59.501 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
222 | 229 | 5.309543 | TGTCCCTTGATAATGGAACCGATAT | 59.690 | 40.000 | 0.00 | 0.00 | 0.00 | 1.63 |
270 | 277 | 5.754782 | TGTTATGCAAATAGGGTCAGATGT | 58.245 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
272 | 279 | 6.186957 | TGTTGTTATGCAAATAGGGTCAGAT | 58.813 | 36.000 | 0.00 | 0.00 | 39.03 | 2.90 |
275 | 282 | 6.656632 | TTTGTTGTTATGCAAATAGGGTCA | 57.343 | 33.333 | 0.00 | 0.00 | 39.03 | 4.02 |
303 | 310 | 4.398358 | GGCTTGTGAGTAAATTAGGGGTTC | 59.602 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
334 | 341 | 1.092348 | GGGTGTTCTATTTGCCGTCC | 58.908 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
384 | 391 | 4.199432 | TGCCTCACATGTTTTGTTTTGT | 57.801 | 36.364 | 0.00 | 0.00 | 36.00 | 2.83 |
419 | 436 | 1.201647 | AGTCAATGTCGTAGGTGTCGG | 59.798 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
426 | 443 | 9.653067 | CTCTTACTTATACAGTCAATGTCGTAG | 57.347 | 37.037 | 0.00 | 0.00 | 42.70 | 3.51 |
428 | 445 | 6.973474 | GCTCTTACTTATACAGTCAATGTCGT | 59.027 | 38.462 | 0.00 | 0.00 | 42.70 | 4.34 |
433 | 450 | 8.540388 | TGGAAAGCTCTTACTTATACAGTCAAT | 58.460 | 33.333 | 0.00 | 0.00 | 36.88 | 2.57 |
435 | 452 | 7.476540 | TGGAAAGCTCTTACTTATACAGTCA | 57.523 | 36.000 | 0.00 | 0.00 | 36.88 | 3.41 |
520 | 537 | 9.616156 | TGTTGTTTTTATTCTGACCTTGTACTA | 57.384 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
545 | 566 | 6.176183 | TGGGTGCATTATTTGGGTTTTTATG | 58.824 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
548 | 569 | 4.713792 | TGGGTGCATTATTTGGGTTTTT | 57.286 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
603 | 629 | 6.611236 | TGGGTTTCTTCTCCTTTTCTTTTCAT | 59.389 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
632 | 666 | 2.439156 | GGCCGGCTGCTGAGATTT | 60.439 | 61.111 | 28.56 | 0.00 | 40.92 | 2.17 |
684 | 721 | 1.679153 | TCTCGGCTTTTGTTTTGGGTC | 59.321 | 47.619 | 0.00 | 0.00 | 0.00 | 4.46 |
1228 | 1583 | 1.107114 | AACGCCCACACACATCAAAA | 58.893 | 45.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1317 | 1673 | 4.399764 | CCCTGGATGGCAGACCTA | 57.600 | 61.111 | 13.25 | 1.84 | 36.63 | 3.08 |
1399 | 1759 | 5.798434 | CGGTAATATTTGTCGCTATCATCGA | 59.202 | 40.000 | 0.00 | 0.00 | 0.00 | 3.59 |
1461 | 1823 | 0.107831 | GTAACCACCTGTGACCAGCA | 59.892 | 55.000 | 0.00 | 0.00 | 37.38 | 4.41 |
1491 | 1860 | 5.762179 | AACACCTGGATTATGAAGAGTGA | 57.238 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1602 | 1971 | 8.770438 | TTGCAAACTAAAGTCATCAAAACTTT | 57.230 | 26.923 | 0.00 | 6.50 | 46.04 | 2.66 |
1620 | 1989 | 5.276678 | GCATGTGCATCAGATATTTGCAAAC | 60.277 | 40.000 | 15.41 | 1.67 | 46.91 | 2.93 |
1621 | 1990 | 4.806775 | GCATGTGCATCAGATATTTGCAAA | 59.193 | 37.500 | 15.44 | 15.44 | 46.91 | 3.68 |
1630 | 1999 | 2.730382 | TGAAAGGCATGTGCATCAGAT | 58.270 | 42.857 | 7.36 | 0.00 | 44.36 | 2.90 |
1652 | 2021 | 6.417191 | TCCTTACAAACTTCGCATAATGAC | 57.583 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
1679 | 2048 | 3.354948 | TCAGATGCCAGTTATTGCTGT | 57.645 | 42.857 | 0.00 | 0.00 | 34.84 | 4.40 |
1709 | 2078 | 8.131100 | CCAAGTAGTATTGCCAACAAATGATAG | 58.869 | 37.037 | 0.00 | 0.00 | 39.77 | 2.08 |
1718 | 2218 | 6.346096 | TCTACATCCAAGTAGTATTGCCAAC | 58.654 | 40.000 | 0.00 | 0.00 | 41.68 | 3.77 |
1743 | 2243 | 2.664916 | TGTCTAAACGCGGTCTACAAC | 58.335 | 47.619 | 12.47 | 0.00 | 0.00 | 3.32 |
1744 | 2244 | 3.581024 | ATGTCTAAACGCGGTCTACAA | 57.419 | 42.857 | 12.47 | 0.00 | 0.00 | 2.41 |
1745 | 2245 | 3.192001 | AGAATGTCTAAACGCGGTCTACA | 59.808 | 43.478 | 12.47 | 10.00 | 0.00 | 2.74 |
1746 | 2246 | 3.546670 | CAGAATGTCTAAACGCGGTCTAC | 59.453 | 47.826 | 12.47 | 3.53 | 0.00 | 2.59 |
1747 | 2247 | 3.441222 | TCAGAATGTCTAAACGCGGTCTA | 59.559 | 43.478 | 12.47 | 0.00 | 37.40 | 2.59 |
1748 | 2248 | 2.230508 | TCAGAATGTCTAAACGCGGTCT | 59.769 | 45.455 | 12.47 | 0.00 | 37.40 | 3.85 |
1749 | 2249 | 2.344741 | GTCAGAATGTCTAAACGCGGTC | 59.655 | 50.000 | 12.47 | 0.00 | 37.40 | 4.79 |
1750 | 2250 | 2.334838 | GTCAGAATGTCTAAACGCGGT | 58.665 | 47.619 | 12.47 | 0.00 | 37.40 | 5.68 |
1767 | 2267 | 4.640771 | AGCCTTAAGAAGTCAATGGTCA | 57.359 | 40.909 | 3.36 | 0.00 | 0.00 | 4.02 |
2060 | 2569 | 7.070946 | AGGAACAATGTCTCATACTCTCATCAT | 59.929 | 37.037 | 0.00 | 0.00 | 0.00 | 2.45 |
2063 | 2572 | 6.610830 | AGAGGAACAATGTCTCATACTCTCAT | 59.389 | 38.462 | 5.14 | 0.00 | 0.00 | 2.90 |
2064 | 2573 | 5.954752 | AGAGGAACAATGTCTCATACTCTCA | 59.045 | 40.000 | 5.14 | 0.00 | 0.00 | 3.27 |
2065 | 2574 | 6.463995 | AGAGGAACAATGTCTCATACTCTC | 57.536 | 41.667 | 5.14 | 0.00 | 0.00 | 3.20 |
2066 | 2575 | 6.865834 | AAGAGGAACAATGTCTCATACTCT | 57.134 | 37.500 | 5.14 | 0.00 | 34.54 | 3.24 |
2067 | 2576 | 9.092876 | CTTAAAGAGGAACAATGTCTCATACTC | 57.907 | 37.037 | 5.14 | 0.00 | 0.00 | 2.59 |
2068 | 2577 | 7.550906 | GCTTAAAGAGGAACAATGTCTCATACT | 59.449 | 37.037 | 5.14 | 0.00 | 0.00 | 2.12 |
2069 | 2578 | 7.334421 | TGCTTAAAGAGGAACAATGTCTCATAC | 59.666 | 37.037 | 5.14 | 0.00 | 0.00 | 2.39 |
2070 | 2579 | 7.394016 | TGCTTAAAGAGGAACAATGTCTCATA | 58.606 | 34.615 | 5.14 | 0.00 | 0.00 | 2.15 |
2118 | 2627 | 2.488153 | GTGAATGTTAAGCCCCACAGTC | 59.512 | 50.000 | 1.40 | 1.40 | 38.26 | 3.51 |
2128 | 2637 | 6.774354 | AAGCAGCAAAATGTGAATGTTAAG | 57.226 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
2331 | 2840 | 7.881142 | TGTTCCAAAACAACTTGGTATGATAG | 58.119 | 34.615 | 2.48 | 0.00 | 45.29 | 2.08 |
2435 | 2950 | 4.934001 | GTGCATCTCAATTTGTCTCAGAGA | 59.066 | 41.667 | 0.00 | 0.00 | 39.41 | 3.10 |
2527 | 3063 | 2.655407 | TGGCCATTCCCTTTAACCCTTA | 59.345 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
2580 | 3116 | 3.091545 | GGGCTTTCTTTGGATGACATGA | 58.908 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
2581 | 3117 | 2.827322 | TGGGCTTTCTTTGGATGACATG | 59.173 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
2582 | 3118 | 3.173953 | TGGGCTTTCTTTGGATGACAT | 57.826 | 42.857 | 0.00 | 0.00 | 0.00 | 3.06 |
2583 | 3119 | 2.673775 | TGGGCTTTCTTTGGATGACA | 57.326 | 45.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2584 | 3120 | 4.706962 | ACTATTGGGCTTTCTTTGGATGAC | 59.293 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
2622 | 3158 | 0.390860 | CCCCAATCAGCCTCGACTAG | 59.609 | 60.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2654 | 3190 | 6.029607 | CACATGTATGTTAATGTTCAGGTGC | 58.970 | 40.000 | 0.00 | 0.00 | 39.39 | 5.01 |
2659 | 3195 | 8.560355 | AGTAAGCACATGTATGTTAATGTTCA | 57.440 | 30.769 | 0.00 | 0.00 | 39.39 | 3.18 |
2695 | 3231 | 8.077991 | TGCAGAGAAATTCATTACAAGACAAAG | 58.922 | 33.333 | 0.00 | 0.00 | 0.00 | 2.77 |
2756 | 3292 | 5.245301 | TCTGATCGGACTTCCTTCTGTAAAA | 59.755 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2825 | 3363 | 9.897744 | ACAATACAATAACACACAATGAAAGAG | 57.102 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
2916 | 3456 | 0.978146 | CGTTCTCCCATCCTCCCTGT | 60.978 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3152 | 3757 | 4.393062 | CACTGGCAGTTTAGTACAATCAGG | 59.607 | 45.833 | 19.43 | 0.00 | 0.00 | 3.86 |
3294 | 3906 | 1.815003 | CTTTCAGGCCCTAAAGCAGTG | 59.185 | 52.381 | 12.97 | 0.00 | 0.00 | 3.66 |
3306 | 3918 | 1.540580 | GGTACGGGATAGCTTTCAGGC | 60.541 | 57.143 | 6.50 | 0.00 | 0.00 | 4.85 |
3360 | 3972 | 7.823799 | ACCAATACATGAAATTTGATGGGTTTC | 59.176 | 33.333 | 19.75 | 0.00 | 33.58 | 2.78 |
3437 | 4050 | 2.825861 | ATGCAGCAGGAAAAAGTTGG | 57.174 | 45.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3687 | 4360 | 3.860125 | ACACGCGCACACACACAC | 61.860 | 61.111 | 5.73 | 0.00 | 0.00 | 3.82 |
3696 | 4369 | 4.522689 | ACACCTCACACACGCGCA | 62.523 | 61.111 | 5.73 | 0.00 | 0.00 | 6.09 |
3698 | 4371 | 2.584970 | ACACACCTCACACACGCG | 60.585 | 61.111 | 3.53 | 3.53 | 0.00 | 6.01 |
3700 | 4373 | 0.739462 | ACACACACACCTCACACACG | 60.739 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
3702 | 4375 | 0.392327 | CCACACACACACCTCACACA | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3984 | 4676 | 8.509690 | TGCTAATCACGTATAGTATTCCAGTAC | 58.490 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
3990 | 4682 | 9.841880 | TGATCTTGCTAATCACGTATAGTATTC | 57.158 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3998 | 4690 | 8.942338 | AGTTAAATGATCTTGCTAATCACGTA | 57.058 | 30.769 | 0.00 | 0.00 | 36.04 | 3.57 |
3999 | 4691 | 7.849804 | AGTTAAATGATCTTGCTAATCACGT | 57.150 | 32.000 | 0.00 | 0.00 | 36.04 | 4.49 |
4000 | 4692 | 8.539062 | CAAGTTAAATGATCTTGCTAATCACG | 57.461 | 34.615 | 0.00 | 0.00 | 36.04 | 4.35 |
4011 | 4703 | 8.963725 | TGAATGATCTTGCAAGTTAAATGATCT | 58.036 | 29.630 | 25.19 | 5.40 | 32.58 | 2.75 |
4012 | 4704 | 9.745880 | ATGAATGATCTTGCAAGTTAAATGATC | 57.254 | 29.630 | 25.19 | 18.26 | 0.00 | 2.92 |
4013 | 4705 | 9.529325 | CATGAATGATCTTGCAAGTTAAATGAT | 57.471 | 29.630 | 25.19 | 10.36 | 0.00 | 2.45 |
4014 | 4706 | 8.741841 | TCATGAATGATCTTGCAAGTTAAATGA | 58.258 | 29.630 | 25.19 | 20.01 | 32.29 | 2.57 |
4015 | 4707 | 8.920509 | TCATGAATGATCTTGCAAGTTAAATG | 57.079 | 30.769 | 25.19 | 18.45 | 32.29 | 2.32 |
4019 | 4711 | 9.399797 | AGTAATCATGAATGATCTTGCAAGTTA | 57.600 | 29.630 | 25.19 | 13.35 | 46.22 | 2.24 |
4020 | 4712 | 8.289939 | AGTAATCATGAATGATCTTGCAAGTT | 57.710 | 30.769 | 25.19 | 17.79 | 46.22 | 2.66 |
4021 | 4713 | 7.876936 | AGTAATCATGAATGATCTTGCAAGT | 57.123 | 32.000 | 25.19 | 13.20 | 46.22 | 3.16 |
4024 | 4716 | 9.440773 | GGTATAGTAATCATGAATGATCTTGCA | 57.559 | 33.333 | 0.00 | 0.00 | 46.22 | 4.08 |
4025 | 4717 | 9.440773 | TGGTATAGTAATCATGAATGATCTTGC | 57.559 | 33.333 | 0.00 | 0.00 | 46.22 | 4.01 |
4041 | 4733 | 6.934645 | GGCATGCTGATTACTTGGTATAGTAA | 59.065 | 38.462 | 18.92 | 0.00 | 42.87 | 2.24 |
4042 | 4734 | 6.464222 | GGCATGCTGATTACTTGGTATAGTA | 58.536 | 40.000 | 18.92 | 0.00 | 0.00 | 1.82 |
4043 | 4735 | 5.308825 | GGCATGCTGATTACTTGGTATAGT | 58.691 | 41.667 | 18.92 | 0.00 | 0.00 | 2.12 |
4044 | 4736 | 4.697352 | GGGCATGCTGATTACTTGGTATAG | 59.303 | 45.833 | 18.92 | 0.00 | 0.00 | 1.31 |
4045 | 4737 | 4.506625 | GGGGCATGCTGATTACTTGGTATA | 60.507 | 45.833 | 18.92 | 0.00 | 0.00 | 1.47 |
4046 | 4738 | 3.490348 | GGGCATGCTGATTACTTGGTAT | 58.510 | 45.455 | 18.92 | 0.00 | 0.00 | 2.73 |
4047 | 4739 | 2.422803 | GGGGCATGCTGATTACTTGGTA | 60.423 | 50.000 | 18.92 | 0.00 | 0.00 | 3.25 |
4048 | 4740 | 1.686115 | GGGGCATGCTGATTACTTGGT | 60.686 | 52.381 | 18.92 | 0.00 | 0.00 | 3.67 |
4049 | 4741 | 1.035139 | GGGGCATGCTGATTACTTGG | 58.965 | 55.000 | 18.92 | 0.00 | 0.00 | 3.61 |
4050 | 4742 | 1.035139 | GGGGGCATGCTGATTACTTG | 58.965 | 55.000 | 18.92 | 0.00 | 0.00 | 3.16 |
4051 | 4743 | 0.630673 | TGGGGGCATGCTGATTACTT | 59.369 | 50.000 | 18.92 | 0.00 | 0.00 | 2.24 |
4292 | 4987 | 1.133976 | GCCTCTTGCATCCACTGGTAT | 60.134 | 52.381 | 0.00 | 0.00 | 40.77 | 2.73 |
4331 | 5026 | 0.764271 | TCCAGTTGTCATGCCACTCA | 59.236 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4401 | 5096 | 0.742990 | AGCGAGAGACGACAGAGGAG | 60.743 | 60.000 | 0.00 | 0.00 | 45.77 | 3.69 |
4404 | 5099 | 1.466697 | GGAAAGCGAGAGACGACAGAG | 60.467 | 57.143 | 0.00 | 0.00 | 45.77 | 3.35 |
4418 | 5113 | 1.815613 | GAGGAGAAGGCAAAGGAAAGC | 59.184 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4447 | 5142 | 1.609783 | CAAGGTTGGGGCCTAGAGG | 59.390 | 63.158 | 0.84 | 0.00 | 38.03 | 3.69 |
4616 | 5311 | 8.766493 | TGAAATTTGAGAAATAATATGACGCG | 57.234 | 30.769 | 3.53 | 3.53 | 0.00 | 6.01 |
4779 | 5475 | 4.989168 | ACTTCCAGCTAAGTCGTTTTACTG | 59.011 | 41.667 | 0.00 | 0.00 | 34.60 | 2.74 |
4790 | 5489 | 9.046296 | CCAGTGTTTTATATACTTCCAGCTAAG | 57.954 | 37.037 | 0.00 | 0.00 | 0.00 | 2.18 |
4809 | 5508 | 2.498167 | GTCACTTCATGAGCCAGTGTT | 58.502 | 47.619 | 20.28 | 0.00 | 38.28 | 3.32 |
4829 | 5529 | 5.061920 | ACTTCCAGCTAAAAGACTACTCG | 57.938 | 43.478 | 12.81 | 0.00 | 0.00 | 4.18 |
4839 | 5539 | 9.391006 | CCAGTGTTTTATATACTTCCAGCTAAA | 57.609 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
4840 | 5540 | 7.497909 | GCCAGTGTTTTATATACTTCCAGCTAA | 59.502 | 37.037 | 0.00 | 0.00 | 0.00 | 3.09 |
4841 | 5541 | 6.990349 | GCCAGTGTTTTATATACTTCCAGCTA | 59.010 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
4842 | 5542 | 5.823045 | GCCAGTGTTTTATATACTTCCAGCT | 59.177 | 40.000 | 0.00 | 0.00 | 0.00 | 4.24 |
4843 | 5543 | 5.823045 | AGCCAGTGTTTTATATACTTCCAGC | 59.177 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4844 | 5544 | 7.047891 | TGAGCCAGTGTTTTATATACTTCCAG | 58.952 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
4845 | 5545 | 6.953101 | TGAGCCAGTGTTTTATATACTTCCA | 58.047 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4846 | 5546 | 7.715249 | TCATGAGCCAGTGTTTTATATACTTCC | 59.285 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
4847 | 5547 | 8.662781 | TCATGAGCCAGTGTTTTATATACTTC | 57.337 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
4848 | 5548 | 9.113838 | CTTCATGAGCCAGTGTTTTATATACTT | 57.886 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
4849 | 5549 | 8.267894 | ACTTCATGAGCCAGTGTTTTATATACT | 58.732 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
4850 | 5550 | 8.338259 | CACTTCATGAGCCAGTGTTTTATATAC | 58.662 | 37.037 | 15.14 | 0.00 | 34.39 | 1.47 |
4851 | 5551 | 8.264347 | TCACTTCATGAGCCAGTGTTTTATATA | 58.736 | 33.333 | 20.28 | 2.17 | 39.24 | 0.86 |
4852 | 5552 | 7.112122 | TCACTTCATGAGCCAGTGTTTTATAT | 58.888 | 34.615 | 20.28 | 0.00 | 39.24 | 0.86 |
4853 | 5553 | 6.472016 | TCACTTCATGAGCCAGTGTTTTATA | 58.528 | 36.000 | 20.28 | 3.33 | 39.24 | 0.98 |
4854 | 5554 | 5.316167 | TCACTTCATGAGCCAGTGTTTTAT | 58.684 | 37.500 | 20.28 | 0.00 | 39.24 | 1.40 |
4855 | 5555 | 4.713553 | TCACTTCATGAGCCAGTGTTTTA | 58.286 | 39.130 | 20.28 | 4.20 | 39.24 | 1.52 |
4856 | 5556 | 3.554934 | TCACTTCATGAGCCAGTGTTTT | 58.445 | 40.909 | 20.28 | 0.00 | 39.24 | 2.43 |
4857 | 5557 | 3.213206 | TCACTTCATGAGCCAGTGTTT | 57.787 | 42.857 | 20.28 | 0.00 | 39.24 | 2.83 |
4858 | 5558 | 2.936919 | TCACTTCATGAGCCAGTGTT | 57.063 | 45.000 | 20.28 | 0.00 | 39.24 | 3.32 |
4859 | 5559 | 2.303890 | TGATCACTTCATGAGCCAGTGT | 59.696 | 45.455 | 20.28 | 11.30 | 43.49 | 3.55 |
4860 | 5560 | 2.937149 | CTGATCACTTCATGAGCCAGTG | 59.063 | 50.000 | 16.66 | 16.66 | 43.49 | 3.66 |
4861 | 5561 | 2.570752 | ACTGATCACTTCATGAGCCAGT | 59.429 | 45.455 | 0.00 | 8.20 | 43.49 | 4.00 |
4862 | 5562 | 3.263489 | ACTGATCACTTCATGAGCCAG | 57.737 | 47.619 | 0.00 | 0.00 | 43.49 | 4.85 |
4863 | 5563 | 4.223700 | ACTTACTGATCACTTCATGAGCCA | 59.776 | 41.667 | 0.00 | 0.00 | 43.49 | 4.75 |
4864 | 5564 | 4.764172 | ACTTACTGATCACTTCATGAGCC | 58.236 | 43.478 | 0.00 | 0.00 | 43.49 | 4.70 |
4865 | 5565 | 5.659463 | AGACTTACTGATCACTTCATGAGC | 58.341 | 41.667 | 0.00 | 0.00 | 44.45 | 4.26 |
4866 | 5566 | 7.095910 | ACAAGACTTACTGATCACTTCATGAG | 58.904 | 38.462 | 0.00 | 0.00 | 41.91 | 2.90 |
4867 | 5567 | 6.997655 | ACAAGACTTACTGATCACTTCATGA | 58.002 | 36.000 | 0.00 | 0.00 | 43.13 | 3.07 |
4868 | 5568 | 7.095910 | AGACAAGACTTACTGATCACTTCATG | 58.904 | 38.462 | 0.00 | 0.00 | 32.72 | 3.07 |
4869 | 5569 | 7.238486 | AGACAAGACTTACTGATCACTTCAT | 57.762 | 36.000 | 0.00 | 0.00 | 32.72 | 2.57 |
4870 | 5570 | 6.656632 | AGACAAGACTTACTGATCACTTCA | 57.343 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
4871 | 5571 | 7.954788 | AAAGACAAGACTTACTGATCACTTC | 57.045 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4872 | 5572 | 7.169982 | CGAAAAGACAAGACTTACTGATCACTT | 59.830 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
4873 | 5573 | 6.642950 | CGAAAAGACAAGACTTACTGATCACT | 59.357 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
4874 | 5574 | 6.641314 | TCGAAAAGACAAGACTTACTGATCAC | 59.359 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
4875 | 5575 | 6.745116 | TCGAAAAGACAAGACTTACTGATCA | 58.255 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
4876 | 5576 | 7.085116 | TCTCGAAAAGACAAGACTTACTGATC | 58.915 | 38.462 | 0.00 | 0.00 | 0.00 | 2.92 |
4877 | 5577 | 6.982852 | TCTCGAAAAGACAAGACTTACTGAT | 58.017 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4878 | 5578 | 6.387041 | TCTCGAAAAGACAAGACTTACTGA | 57.613 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
4879 | 5579 | 6.918569 | TCTTCTCGAAAAGACAAGACTTACTG | 59.081 | 38.462 | 0.00 | 0.00 | 30.51 | 2.74 |
4880 | 5580 | 7.040473 | TCTTCTCGAAAAGACAAGACTTACT | 57.960 | 36.000 | 0.00 | 0.00 | 30.51 | 2.24 |
4881 | 5581 | 6.919115 | ACTCTTCTCGAAAAGACAAGACTTAC | 59.081 | 38.462 | 0.00 | 0.00 | 31.88 | 2.34 |
4882 | 5582 | 7.040473 | ACTCTTCTCGAAAAGACAAGACTTA | 57.960 | 36.000 | 0.00 | 0.00 | 31.88 | 2.24 |
4883 | 5583 | 5.908341 | ACTCTTCTCGAAAAGACAAGACTT | 58.092 | 37.500 | 0.00 | 0.00 | 31.88 | 3.01 |
4890 | 5590 | 8.485591 | TCGAAAATTTACTCTTCTCGAAAAGAC | 58.514 | 33.333 | 0.00 | 0.00 | 32.27 | 3.01 |
4965 | 5671 | 1.984570 | CGAGCCTCTCTCACCCCAA | 60.985 | 63.158 | 0.00 | 0.00 | 41.98 | 4.12 |
5074 | 5780 | 7.430502 | ACAGTACGCTCGTCATAATTAGTTTAC | 59.569 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
5075 | 5781 | 7.430211 | CACAGTACGCTCGTCATAATTAGTTTA | 59.570 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
5087 | 5793 | 1.130749 | ACAGATCACAGTACGCTCGTC | 59.869 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
5088 | 5794 | 1.166129 | ACAGATCACAGTACGCTCGT | 58.834 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
5090 | 5796 | 3.623960 | AGTCTACAGATCACAGTACGCTC | 59.376 | 47.826 | 0.00 | 0.00 | 0.00 | 5.03 |
5097 | 5807 | 6.478344 | GGCTGAAAATAGTCTACAGATCACAG | 59.522 | 42.308 | 0.00 | 0.00 | 0.00 | 3.66 |
5120 | 5830 | 3.878245 | GCAATAGATGCGAGTTTTAGGC | 58.122 | 45.455 | 0.00 | 0.00 | 46.87 | 3.93 |
5172 | 5882 | 6.156775 | TCTCTTGATCCAGTACAAATCATGGA | 59.843 | 38.462 | 2.10 | 2.10 | 45.48 | 3.41 |
5173 | 5883 | 6.351711 | TCTCTTGATCCAGTACAAATCATGG | 58.648 | 40.000 | 0.00 | 0.00 | 30.03 | 3.66 |
5232 | 5945 | 9.612620 | CTCTGTGTTTAGGTTCATTTTTATGTC | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
5269 | 5982 | 9.189156 | TGCTATGGCTTCAGTAAGAATTTTAAT | 57.811 | 29.630 | 1.68 | 0.00 | 39.59 | 1.40 |
5270 | 5983 | 8.574251 | TGCTATGGCTTCAGTAAGAATTTTAA | 57.426 | 30.769 | 1.68 | 0.00 | 39.59 | 1.52 |
5271 | 5984 | 8.574251 | TTGCTATGGCTTCAGTAAGAATTTTA | 57.426 | 30.769 | 1.68 | 0.00 | 39.59 | 1.52 |
5273 | 5986 | 7.177392 | AGTTTGCTATGGCTTCAGTAAGAATTT | 59.823 | 33.333 | 1.68 | 0.00 | 39.59 | 1.82 |
5274 | 5987 | 6.660949 | AGTTTGCTATGGCTTCAGTAAGAATT | 59.339 | 34.615 | 1.68 | 0.00 | 39.59 | 2.17 |
5275 | 5988 | 6.183347 | AGTTTGCTATGGCTTCAGTAAGAAT | 58.817 | 36.000 | 1.68 | 0.00 | 39.59 | 2.40 |
5276 | 5989 | 5.560724 | AGTTTGCTATGGCTTCAGTAAGAA | 58.439 | 37.500 | 1.68 | 0.00 | 39.59 | 2.52 |
5277 | 5990 | 5.165961 | AGTTTGCTATGGCTTCAGTAAGA | 57.834 | 39.130 | 1.68 | 0.00 | 39.59 | 2.10 |
5278 | 5991 | 4.033358 | CGAGTTTGCTATGGCTTCAGTAAG | 59.967 | 45.833 | 1.68 | 0.00 | 39.59 | 2.34 |
5280 | 5993 | 3.056107 | ACGAGTTTGCTATGGCTTCAGTA | 60.056 | 43.478 | 1.68 | 0.00 | 39.59 | 2.74 |
5281 | 5994 | 2.289694 | ACGAGTTTGCTATGGCTTCAGT | 60.290 | 45.455 | 1.68 | 0.00 | 39.59 | 3.41 |
5282 | 5995 | 2.349886 | GACGAGTTTGCTATGGCTTCAG | 59.650 | 50.000 | 1.68 | 0.00 | 39.59 | 3.02 |
5283 | 5996 | 2.289382 | TGACGAGTTTGCTATGGCTTCA | 60.289 | 45.455 | 1.68 | 0.00 | 39.59 | 3.02 |
5284 | 5997 | 2.346803 | TGACGAGTTTGCTATGGCTTC | 58.653 | 47.619 | 1.68 | 0.00 | 39.59 | 3.86 |
5285 | 5998 | 2.472695 | TGACGAGTTTGCTATGGCTT | 57.527 | 45.000 | 1.68 | 0.00 | 39.59 | 4.35 |
5286 | 5999 | 2.555199 | GATGACGAGTTTGCTATGGCT | 58.445 | 47.619 | 1.68 | 0.00 | 39.59 | 4.75 |
5287 | 6000 | 1.258982 | CGATGACGAGTTTGCTATGGC | 59.741 | 52.381 | 0.00 | 0.00 | 42.66 | 4.40 |
5288 | 6001 | 2.540515 | ACGATGACGAGTTTGCTATGG | 58.459 | 47.619 | 0.00 | 0.00 | 42.66 | 2.74 |
5295 | 6008 | 3.985925 | GGTAGTGAAACGATGACGAGTTT | 59.014 | 43.478 | 0.00 | 0.00 | 45.86 | 2.66 |
5299 | 6012 | 3.861276 | ATGGTAGTGAAACGATGACGA | 57.139 | 42.857 | 0.00 | 0.00 | 45.86 | 4.20 |
5314 | 6027 | 4.100035 | CACTGATTGGTGAGAGCTATGGTA | 59.900 | 45.833 | 0.00 | 0.00 | 39.34 | 3.25 |
5332 | 6045 | 0.319728 | GTCTTGAGCTCAGCCACTGA | 59.680 | 55.000 | 17.43 | 6.96 | 38.25 | 3.41 |
5333 | 6046 | 0.034476 | TGTCTTGAGCTCAGCCACTG | 59.966 | 55.000 | 17.43 | 4.78 | 0.00 | 3.66 |
5334 | 6047 | 0.761187 | TTGTCTTGAGCTCAGCCACT | 59.239 | 50.000 | 17.43 | 0.00 | 0.00 | 4.00 |
5335 | 6048 | 1.467734 | CATTGTCTTGAGCTCAGCCAC | 59.532 | 52.381 | 17.43 | 14.51 | 0.00 | 5.01 |
5336 | 6049 | 1.072806 | ACATTGTCTTGAGCTCAGCCA | 59.927 | 47.619 | 17.43 | 11.77 | 0.00 | 4.75 |
5337 | 6050 | 1.467734 | CACATTGTCTTGAGCTCAGCC | 59.532 | 52.381 | 17.43 | 9.26 | 0.00 | 4.85 |
5338 | 6051 | 2.095869 | CACACATTGTCTTGAGCTCAGC | 60.096 | 50.000 | 17.43 | 11.72 | 0.00 | 4.26 |
5339 | 6052 | 3.136763 | ACACACATTGTCTTGAGCTCAG | 58.863 | 45.455 | 17.43 | 11.30 | 29.79 | 3.35 |
5340 | 6053 | 3.198409 | ACACACATTGTCTTGAGCTCA | 57.802 | 42.857 | 13.74 | 13.74 | 29.79 | 4.26 |
5341 | 6054 | 3.561310 | TGAACACACATTGTCTTGAGCTC | 59.439 | 43.478 | 6.82 | 6.82 | 37.51 | 4.09 |
5342 | 6055 | 3.544684 | TGAACACACATTGTCTTGAGCT | 58.455 | 40.909 | 0.00 | 0.00 | 37.51 | 4.09 |
5343 | 6056 | 3.969117 | TGAACACACATTGTCTTGAGC | 57.031 | 42.857 | 2.60 | 0.00 | 37.51 | 4.26 |
5356 | 6069 | 9.913310 | TGTGATTAATAGGGAAATATGAACACA | 57.087 | 29.630 | 0.00 | 0.00 | 0.00 | 3.72 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.