Multiple sequence alignment - TraesCS5B01G469400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G469400 chr5B 100.000 3685 0 0 1 3685 642991295 642994979 0.000000e+00 6806.0
1 TraesCS5B01G469400 chr5B 91.006 934 73 7 1801 2728 643651655 643650727 0.000000e+00 1249.0
2 TraesCS5B01G469400 chr5B 85.082 610 66 16 666 1265 643652843 643652249 1.890000e-167 599.0
3 TraesCS5B01G469400 chr5B 87.654 162 17 3 6 166 241608577 241608418 6.280000e-43 185.0
4 TraesCS5B01G469400 chr5D 92.466 2084 105 20 663 2736 511956123 511958164 0.000000e+00 2931.0
5 TraesCS5B01G469400 chr5D 91.796 963 71 7 1771 2728 512763714 512762755 0.000000e+00 1334.0
6 TraesCS5B01G469400 chr5D 85.484 620 54 17 668 1265 512765125 512764520 6.760000e-172 614.0
7 TraesCS5B01G469400 chr5D 82.709 347 30 15 3214 3557 511971021 511971340 7.790000e-72 281.0
8 TraesCS5B01G469400 chr5D 85.385 260 35 2 1000 1256 511972150 511972409 2.180000e-67 267.0
9 TraesCS5B01G469400 chr5D 86.264 182 21 4 6 184 232158061 232157881 1.040000e-45 195.0
10 TraesCS5B01G469400 chr5D 91.736 121 9 1 2930 3050 511958147 511958266 2.280000e-37 167.0
11 TraesCS5B01G469400 chr5D 83.333 102 12 4 170 270 69901762 69901859 5.070000e-14 89.8
12 TraesCS5B01G469400 chr5A 91.429 1295 61 18 1812 3058 640371094 640372386 0.000000e+00 1731.0
13 TraesCS5B01G469400 chr5A 92.212 886 63 5 1847 2728 640925778 640924895 0.000000e+00 1249.0
14 TraesCS5B01G469400 chr5A 88.050 887 53 32 655 1513 640370236 640371097 0.000000e+00 1002.0
15 TraesCS5B01G469400 chr5A 86.634 606 52 14 666 1255 640926988 640926396 0.000000e+00 643.0
16 TraesCS5B01G469400 chr5A 92.088 455 28 2 2280 2726 640307768 640308222 5.190000e-178 634.0
17 TraesCS5B01G469400 chr5A 85.080 563 76 8 3120 3680 640429670 640430226 5.340000e-158 568.0
18 TraesCS5B01G469400 chr5A 85.213 399 57 2 2304 2701 640354020 640354417 3.430000e-110 409.0
19 TraesCS5B01G469400 chr5A 87.464 343 34 7 277 616 640369677 640370013 1.610000e-103 387.0
20 TraesCS5B01G469400 chr5A 89.123 285 25 5 3102 3385 640308391 640308670 2.110000e-92 350.0
21 TraesCS5B01G469400 chr5A 93.548 186 11 1 2873 3058 640308208 640308392 3.620000e-70 276.0
22 TraesCS5B01G469400 chr5A 83.462 260 40 1 1000 1256 640318616 640318875 4.760000e-59 239.0
23 TraesCS5B01G469400 chr5A 88.108 185 22 0 1072 1256 640390592 640390776 1.720000e-53 220.0
24 TraesCS5B01G469400 chr5A 84.298 121 12 3 2938 3058 640429543 640429656 1.080000e-20 111.0
25 TraesCS5B01G469400 chr3D 86.630 718 82 8 1980 2686 601626126 601626840 0.000000e+00 782.0
26 TraesCS5B01G469400 chr3D 85.027 187 20 6 3 184 489640355 489640538 2.260000e-42 183.0
27 TraesCS5B01G469400 chr3D 84.409 186 23 6 3 184 177869078 177869261 1.050000e-40 178.0
28 TraesCS5B01G469400 chr3D 79.535 215 36 4 170 377 318576356 318576143 2.970000e-31 147.0
29 TraesCS5B01G469400 chr4A 87.349 166 17 4 3 166 137788345 137788508 1.750000e-43 187.0
30 TraesCS5B01G469400 chr4A 85.027 187 21 7 3 184 582521223 582521407 2.260000e-42 183.0
31 TraesCS5B01G469400 chr7D 84.865 185 24 4 3 184 617456365 617456548 2.260000e-42 183.0
32 TraesCS5B01G469400 chr3A 85.246 183 21 6 6 184 374969579 374969399 2.260000e-42 183.0
33 TraesCS5B01G469400 chr2A 85.246 183 21 6 6 184 305670654 305670474 2.260000e-42 183.0
34 TraesCS5B01G469400 chr2D 79.397 199 31 4 171 360 47323697 47323894 8.300000e-27 132.0
35 TraesCS5B01G469400 chr2D 77.228 202 39 3 173 368 642892070 642891870 1.080000e-20 111.0
36 TraesCS5B01G469400 chr6B 77.670 206 38 4 173 372 564550092 564549889 6.460000e-23 119.0
37 TraesCS5B01G469400 chr6B 75.943 212 42 6 169 372 159409817 159409607 2.340000e-17 100.0
38 TraesCS5B01G469400 chr1D 83.761 117 17 2 178 293 347495512 347495397 3.890000e-20 110.0
39 TraesCS5B01G469400 chr6D 76.415 212 43 2 170 374 83553586 83553375 1.400000e-19 108.0
40 TraesCS5B01G469400 chr6A 79.545 132 27 0 170 301 100814302 100814171 1.090000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G469400 chr5B 642991295 642994979 3684 False 6806.0 6806 100.000000 1 3685 1 chr5B.!!$F1 3684
1 TraesCS5B01G469400 chr5B 643650727 643652843 2116 True 924.0 1249 88.044000 666 2728 2 chr5B.!!$R2 2062
2 TraesCS5B01G469400 chr5D 511956123 511958266 2143 False 1549.0 2931 92.101000 663 3050 2 chr5D.!!$F2 2387
3 TraesCS5B01G469400 chr5D 512762755 512765125 2370 True 974.0 1334 88.640000 668 2728 2 chr5D.!!$R2 2060
4 TraesCS5B01G469400 chr5D 511971021 511972409 1388 False 274.0 281 84.047000 1000 3557 2 chr5D.!!$F3 2557
5 TraesCS5B01G469400 chr5A 640369677 640372386 2709 False 1040.0 1731 88.981000 277 3058 3 chr5A.!!$F5 2781
6 TraesCS5B01G469400 chr5A 640924895 640926988 2093 True 946.0 1249 89.423000 666 2728 2 chr5A.!!$R1 2062
7 TraesCS5B01G469400 chr5A 640307768 640308670 902 False 420.0 634 91.586333 2280 3385 3 chr5A.!!$F4 1105
8 TraesCS5B01G469400 chr5A 640429543 640430226 683 False 339.5 568 84.689000 2938 3680 2 chr5A.!!$F6 742
9 TraesCS5B01G469400 chr3D 601626126 601626840 714 False 782.0 782 86.630000 1980 2686 1 chr3D.!!$F3 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.377554 CCACCGACGTAGCTGACTAG 59.622 60.0 0.0 0.0 0.00 2.57 F
124 125 0.471617 CCTGTTATCCCAGGCCTCTG 59.528 60.0 0.0 0.0 45.19 3.35 F
1636 2272 0.609131 CCATGTCTTTCGCCCCAAGT 60.609 55.0 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 1858 0.882927 GCACGTAGGTTGCCAAGTCA 60.883 55.0 0.0 0.0 0.0 3.41 R
1958 2619 1.098712 TGTTTGTGCCGTTGGAGACC 61.099 55.0 0.0 0.0 0.0 3.85 R
3322 4058 0.182537 CCAGTTTGTGTGTCCCCAGA 59.817 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.691342 CGTCCTGGGCCACTTCGA 61.691 66.667 0.00 0.00 0.00 3.71
18 19 2.266055 GTCCTGGGCCACTTCGAG 59.734 66.667 0.00 0.00 0.00 4.04
19 20 3.706373 TCCTGGGCCACTTCGAGC 61.706 66.667 0.00 0.00 0.00 5.03
21 22 2.435586 CTGGGCCACTTCGAGCAG 60.436 66.667 0.00 0.00 0.00 4.24
22 23 4.704833 TGGGCCACTTCGAGCAGC 62.705 66.667 0.00 0.00 0.00 5.25
25 26 4.704833 GCCACTTCGAGCAGCCCA 62.705 66.667 0.00 0.00 0.00 5.36
26 27 2.270205 CCACTTCGAGCAGCCCAT 59.730 61.111 0.00 0.00 0.00 4.00
27 28 2.110967 CCACTTCGAGCAGCCCATG 61.111 63.158 0.00 0.00 0.00 3.66
28 29 2.110967 CACTTCGAGCAGCCCATGG 61.111 63.158 4.14 4.14 0.00 3.66
29 30 2.270205 CTTCGAGCAGCCCATGGT 59.730 61.111 11.73 0.00 44.02 3.55
30 31 2.046023 TTCGAGCAGCCCATGGTG 60.046 61.111 11.73 4.31 40.53 4.17
36 37 4.662023 CAGCCCATGGTGCATACA 57.338 55.556 22.33 0.00 32.48 2.29
37 38 2.884976 CAGCCCATGGTGCATACAA 58.115 52.632 22.33 0.00 32.48 2.41
38 39 0.742505 CAGCCCATGGTGCATACAAG 59.257 55.000 22.33 1.80 32.48 3.16
39 40 0.625316 AGCCCATGGTGCATACAAGA 59.375 50.000 22.33 0.00 0.00 3.02
40 41 1.005805 AGCCCATGGTGCATACAAGAA 59.994 47.619 22.33 0.00 0.00 2.52
44 45 3.956199 CCCATGGTGCATACAAGAAAGAT 59.044 43.478 11.73 0.00 0.00 2.40
45 46 4.403432 CCCATGGTGCATACAAGAAAGATT 59.597 41.667 11.73 0.00 0.00 2.40
46 47 5.450965 CCCATGGTGCATACAAGAAAGATTC 60.451 44.000 11.73 0.00 0.00 2.52
47 48 5.450965 CCATGGTGCATACAAGAAAGATTCC 60.451 44.000 2.57 0.00 0.00 3.01
48 49 4.661222 TGGTGCATACAAGAAAGATTCCA 58.339 39.130 0.00 0.00 0.00 3.53
49 50 4.458989 TGGTGCATACAAGAAAGATTCCAC 59.541 41.667 0.00 0.00 0.00 4.02
50 51 4.458989 GGTGCATACAAGAAAGATTCCACA 59.541 41.667 0.00 0.00 0.00 4.17
52 53 6.088824 GTGCATACAAGAAAGATTCCACAAG 58.911 40.000 0.00 0.00 0.00 3.16
53 54 6.003326 TGCATACAAGAAAGATTCCACAAGA 58.997 36.000 0.00 0.00 0.00 3.02
54 55 6.072508 TGCATACAAGAAAGATTCCACAAGAC 60.073 38.462 0.00 0.00 0.00 3.01
55 56 6.150140 GCATACAAGAAAGATTCCACAAGACT 59.850 38.462 0.00 0.00 0.00 3.24
58 59 7.736447 ACAAGAAAGATTCCACAAGACTTAG 57.264 36.000 0.00 0.00 0.00 2.18
59 60 6.205658 ACAAGAAAGATTCCACAAGACTTAGC 59.794 38.462 0.00 0.00 0.00 3.09
60 61 5.869579 AGAAAGATTCCACAAGACTTAGCA 58.130 37.500 0.00 0.00 0.00 3.49
62 63 7.624549 AGAAAGATTCCACAAGACTTAGCATA 58.375 34.615 0.00 0.00 0.00 3.14
63 64 7.550906 AGAAAGATTCCACAAGACTTAGCATAC 59.449 37.037 0.00 0.00 0.00 2.39
64 65 6.299805 AGATTCCACAAGACTTAGCATACA 57.700 37.500 0.00 0.00 0.00 2.29
67 68 5.738619 TCCACAAGACTTAGCATACAAGA 57.261 39.130 0.00 0.00 0.00 3.02
68 69 5.479306 TCCACAAGACTTAGCATACAAGAC 58.521 41.667 0.00 0.00 0.00 3.01
69 70 5.011635 TCCACAAGACTTAGCATACAAGACA 59.988 40.000 0.00 0.00 0.00 3.41
70 71 5.700832 CCACAAGACTTAGCATACAAGACAA 59.299 40.000 0.00 0.00 0.00 3.18
71 72 6.128445 CCACAAGACTTAGCATACAAGACAAG 60.128 42.308 0.00 0.00 0.00 3.16
72 73 6.646653 CACAAGACTTAGCATACAAGACAAGA 59.353 38.462 0.00 0.00 0.00 3.02
74 75 7.171678 ACAAGACTTAGCATACAAGACAAGAAC 59.828 37.037 0.00 0.00 0.00 3.01
75 76 6.998802 AGACTTAGCATACAAGACAAGAACT 58.001 36.000 0.00 0.00 0.00 3.01
76 77 7.093992 AGACTTAGCATACAAGACAAGAACTC 58.906 38.462 0.00 0.00 0.00 3.01
77 78 6.166982 ACTTAGCATACAAGACAAGAACTCC 58.833 40.000 0.00 0.00 0.00 3.85
78 79 4.899352 AGCATACAAGACAAGAACTCCT 57.101 40.909 0.00 0.00 0.00 3.69
82 83 5.415221 CATACAAGACAAGAACTCCTCTCC 58.585 45.833 0.00 0.00 31.02 3.71
83 84 3.309296 ACAAGACAAGAACTCCTCTCCA 58.691 45.455 0.00 0.00 31.02 3.86
84 85 3.070302 ACAAGACAAGAACTCCTCTCCAC 59.930 47.826 0.00 0.00 31.02 4.02
85 86 2.252714 AGACAAGAACTCCTCTCCACC 58.747 52.381 0.00 0.00 31.02 4.61
86 87 0.969894 ACAAGAACTCCTCTCCACCG 59.030 55.000 0.00 0.00 31.02 4.94
87 88 1.257743 CAAGAACTCCTCTCCACCGA 58.742 55.000 0.00 0.00 31.02 4.69
88 89 1.067495 CAAGAACTCCTCTCCACCGAC 60.067 57.143 0.00 0.00 31.02 4.79
89 90 0.961358 AGAACTCCTCTCCACCGACG 60.961 60.000 0.00 0.00 0.00 5.12
90 91 1.228490 AACTCCTCTCCACCGACGT 60.228 57.895 0.00 0.00 0.00 4.34
92 93 0.392729 ACTCCTCTCCACCGACGTAG 60.393 60.000 0.00 0.00 0.00 3.51
93 94 1.716826 CTCCTCTCCACCGACGTAGC 61.717 65.000 0.00 0.00 0.00 3.58
96 97 1.002990 TCTCCACCGACGTAGCTGA 60.003 57.895 0.00 0.00 0.00 4.26
98 99 1.303074 TCCACCGACGTAGCTGACT 60.303 57.895 0.00 0.00 0.00 3.41
100 101 0.377554 CCACCGACGTAGCTGACTAG 59.622 60.000 0.00 0.00 0.00 2.57
101 102 1.085091 CACCGACGTAGCTGACTAGT 58.915 55.000 0.00 0.00 0.00 2.57
103 104 2.030213 CACCGACGTAGCTGACTAGTAC 59.970 54.545 0.00 0.00 0.00 2.73
104 105 2.093764 ACCGACGTAGCTGACTAGTACT 60.094 50.000 0.00 0.00 0.00 2.73
105 106 2.539274 CCGACGTAGCTGACTAGTACTC 59.461 54.545 0.00 0.00 0.00 2.59
106 107 2.539274 CGACGTAGCTGACTAGTACTCC 59.461 54.545 0.00 0.00 0.00 3.85
107 108 3.737663 CGACGTAGCTGACTAGTACTCCT 60.738 52.174 0.00 0.00 0.00 3.69
108 109 3.533547 ACGTAGCTGACTAGTACTCCTG 58.466 50.000 0.00 0.00 0.00 3.86
109 110 3.055240 ACGTAGCTGACTAGTACTCCTGT 60.055 47.826 0.00 0.00 0.00 4.00
111 112 5.114780 CGTAGCTGACTAGTACTCCTGTTA 58.885 45.833 0.00 0.00 0.00 2.41
112 113 5.759273 CGTAGCTGACTAGTACTCCTGTTAT 59.241 44.000 0.00 0.00 0.00 1.89
113 114 6.073657 CGTAGCTGACTAGTACTCCTGTTATC 60.074 46.154 0.00 0.00 0.00 1.75
114 115 5.134661 AGCTGACTAGTACTCCTGTTATCC 58.865 45.833 0.00 0.00 0.00 2.59
115 116 4.278919 GCTGACTAGTACTCCTGTTATCCC 59.721 50.000 0.00 0.00 0.00 3.85
116 117 5.446860 CTGACTAGTACTCCTGTTATCCCA 58.553 45.833 0.00 0.00 0.00 4.37
117 118 5.446860 TGACTAGTACTCCTGTTATCCCAG 58.553 45.833 0.00 0.00 0.00 4.45
123 124 2.936823 CCTGTTATCCCAGGCCTCT 58.063 57.895 0.00 0.00 45.19 3.69
124 125 0.471617 CCTGTTATCCCAGGCCTCTG 59.528 60.000 0.00 0.00 45.19 3.35
139 140 6.109359 CAGGCCTCTGGTACATTATATAAGC 58.891 44.000 0.00 0.00 38.20 3.09
140 141 5.189934 AGGCCTCTGGTACATTATATAAGCC 59.810 44.000 0.00 4.47 38.20 4.35
143 144 6.565234 CCTCTGGTACATTATATAAGCCGAG 58.435 44.000 1.02 10.20 38.20 4.63
144 145 6.377429 CCTCTGGTACATTATATAAGCCGAGA 59.623 42.308 18.01 13.31 38.20 4.04
147 148 5.776208 TGGTACATTATATAAGCCGAGACCA 59.224 40.000 1.02 6.00 0.00 4.02
149 150 5.407407 ACATTATATAAGCCGAGACCAGG 57.593 43.478 1.02 0.00 0.00 4.45
156 157 3.111939 CCGAGACCAGGCTAGTCG 58.888 66.667 7.43 4.03 39.31 4.18
157 158 1.451567 CCGAGACCAGGCTAGTCGA 60.452 63.158 7.43 0.00 39.31 4.20
159 160 1.542767 CCGAGACCAGGCTAGTCGATA 60.543 57.143 7.43 0.00 39.31 2.92
160 161 1.801771 CGAGACCAGGCTAGTCGATAG 59.198 57.143 7.43 0.00 39.31 2.08
190 191 6.691388 TCTTAACTCATTCACATACGATCACG 59.309 38.462 0.00 0.00 45.75 4.35
191 192 4.632538 ACTCATTCACATACGATCACGA 57.367 40.909 0.00 0.00 42.66 4.35
192 193 4.602006 ACTCATTCACATACGATCACGAG 58.398 43.478 0.00 0.00 42.66 4.18
193 194 3.964909 TCATTCACATACGATCACGAGG 58.035 45.455 0.00 0.00 42.66 4.63
195 196 4.577283 TCATTCACATACGATCACGAGGTA 59.423 41.667 0.00 0.00 42.66 3.08
196 197 4.547406 TTCACATACGATCACGAGGTAG 57.453 45.455 0.00 0.00 42.66 3.18
197 198 3.800531 TCACATACGATCACGAGGTAGA 58.199 45.455 0.00 0.00 42.66 2.59
198 199 4.386711 TCACATACGATCACGAGGTAGAT 58.613 43.478 0.00 0.00 42.66 1.98
199 200 4.451435 TCACATACGATCACGAGGTAGATC 59.549 45.833 0.00 0.00 42.66 2.75
200 201 4.213482 CACATACGATCACGAGGTAGATCA 59.787 45.833 0.00 0.00 40.45 2.92
201 202 4.820173 ACATACGATCACGAGGTAGATCAA 59.180 41.667 0.00 0.00 40.45 2.57
202 203 3.694535 ACGATCACGAGGTAGATCAAC 57.305 47.619 0.00 0.00 40.45 3.18
203 204 3.280295 ACGATCACGAGGTAGATCAACT 58.720 45.455 0.00 0.00 40.45 3.16
206 207 4.438880 CGATCACGAGGTAGATCAACTTGT 60.439 45.833 0.00 0.00 40.45 3.16
207 208 5.220796 CGATCACGAGGTAGATCAACTTGTA 60.221 44.000 0.00 0.00 40.45 2.41
208 209 5.306532 TCACGAGGTAGATCAACTTGTAC 57.693 43.478 0.00 0.00 0.00 2.90
210 211 5.123502 TCACGAGGTAGATCAACTTGTACTC 59.876 44.000 0.00 0.00 0.00 2.59
211 212 5.124138 CACGAGGTAGATCAACTTGTACTCT 59.876 44.000 0.00 0.00 0.00 3.24
212 213 5.124138 ACGAGGTAGATCAACTTGTACTCTG 59.876 44.000 0.00 0.00 0.00 3.35
214 215 6.315642 CGAGGTAGATCAACTTGTACTCTGTA 59.684 42.308 0.00 0.00 0.00 2.74
216 217 6.377712 AGGTAGATCAACTTGTACTCTGTACC 59.622 42.308 0.00 0.00 0.00 3.34
217 218 5.662674 AGATCAACTTGTACTCTGTACCC 57.337 43.478 0.00 0.00 0.00 3.69
218 219 4.466726 AGATCAACTTGTACTCTGTACCCC 59.533 45.833 0.00 0.00 0.00 4.95
219 220 3.578978 TCAACTTGTACTCTGTACCCCA 58.421 45.455 5.55 0.00 0.00 4.96
221 222 4.222145 TCAACTTGTACTCTGTACCCCATC 59.778 45.833 5.55 0.00 0.00 3.51
223 224 2.932184 TGTACTCTGTACCCCATCCA 57.068 50.000 5.55 0.00 0.00 3.41
224 225 2.463752 TGTACTCTGTACCCCATCCAC 58.536 52.381 5.55 0.00 0.00 4.02
226 227 2.038863 ACTCTGTACCCCATCCACAA 57.961 50.000 0.00 0.00 0.00 3.33
228 229 2.505819 ACTCTGTACCCCATCCACAATC 59.494 50.000 0.00 0.00 0.00 2.67
229 230 2.505407 CTCTGTACCCCATCCACAATCA 59.495 50.000 0.00 0.00 0.00 2.57
230 231 2.916269 TCTGTACCCCATCCACAATCAA 59.084 45.455 0.00 0.00 0.00 2.57
232 233 4.724293 TCTGTACCCCATCCACAATCAATA 59.276 41.667 0.00 0.00 0.00 1.90
234 235 4.228438 TGTACCCCATCCACAATCAATACA 59.772 41.667 0.00 0.00 0.00 2.29
235 236 4.329638 ACCCCATCCACAATCAATACAA 57.670 40.909 0.00 0.00 0.00 2.41
236 237 4.682563 ACCCCATCCACAATCAATACAAA 58.317 39.130 0.00 0.00 0.00 2.83
238 239 6.439487 ACCCCATCCACAATCAATACAAATA 58.561 36.000 0.00 0.00 0.00 1.40
239 240 6.900186 ACCCCATCCACAATCAATACAAATAA 59.100 34.615 0.00 0.00 0.00 1.40
240 241 7.401493 ACCCCATCCACAATCAATACAAATAAA 59.599 33.333 0.00 0.00 0.00 1.40
241 242 7.927629 CCCCATCCACAATCAATACAAATAAAG 59.072 37.037 0.00 0.00 0.00 1.85
242 243 7.439056 CCCATCCACAATCAATACAAATAAAGC 59.561 37.037 0.00 0.00 0.00 3.51
243 244 7.980662 CCATCCACAATCAATACAAATAAAGCA 59.019 33.333 0.00 0.00 0.00 3.91
245 246 8.929827 TCCACAATCAATACAAATAAAGCATG 57.070 30.769 0.00 0.00 0.00 4.06
263 264 6.422776 AGCATGATGTAAAGTTTTACCTCG 57.577 37.500 11.16 2.94 41.72 4.63
264 265 5.938125 AGCATGATGTAAAGTTTTACCTCGT 59.062 36.000 11.16 9.55 41.72 4.18
265 266 6.430000 AGCATGATGTAAAGTTTTACCTCGTT 59.570 34.615 11.16 2.51 41.72 3.85
266 267 6.523201 GCATGATGTAAAGTTTTACCTCGTTG 59.477 38.462 11.16 12.15 41.72 4.10
269 270 7.211573 TGATGTAAAGTTTTACCTCGTTGAGA 58.788 34.615 11.16 0.00 41.72 3.27
270 271 7.711772 TGATGTAAAGTTTTACCTCGTTGAGAA 59.288 33.333 11.16 0.00 41.72 2.87
271 272 7.846644 TGTAAAGTTTTACCTCGTTGAGAAA 57.153 32.000 11.16 0.00 41.72 2.52
272 273 7.912383 TGTAAAGTTTTACCTCGTTGAGAAAG 58.088 34.615 11.16 0.00 41.72 2.62
273 274 5.419760 AAGTTTTACCTCGTTGAGAAAGC 57.580 39.130 0.00 0.00 0.00 3.51
274 275 3.813724 AGTTTTACCTCGTTGAGAAAGCC 59.186 43.478 0.00 0.00 0.00 4.35
275 276 2.467566 TTACCTCGTTGAGAAAGCCC 57.532 50.000 0.00 0.00 0.00 5.19
281 282 0.882927 CGTTGAGAAAGCCCGAACCA 60.883 55.000 0.00 0.00 0.00 3.67
283 284 1.266989 GTTGAGAAAGCCCGAACCAAG 59.733 52.381 0.00 0.00 0.00 3.61
295 296 4.498009 GCCCGAACCAAGATAAACATCATG 60.498 45.833 0.00 0.00 0.00 3.07
296 297 4.640201 CCCGAACCAAGATAAACATCATGT 59.360 41.667 0.00 0.00 0.00 3.21
297 298 5.220854 CCCGAACCAAGATAAACATCATGTC 60.221 44.000 0.00 0.00 0.00 3.06
298 299 5.586243 CCGAACCAAGATAAACATCATGTCT 59.414 40.000 0.00 0.00 0.00 3.41
299 300 6.238211 CCGAACCAAGATAAACATCATGTCTC 60.238 42.308 0.00 0.00 0.00 3.36
327 329 0.753111 CCATCTTGCCAAGGCTACCC 60.753 60.000 12.96 0.00 42.51 3.69
329 331 1.562672 ATCTTGCCAAGGCTACCCGT 61.563 55.000 12.96 0.00 42.51 5.28
346 348 1.413077 CCGTTTGGGACCCTCTATCTC 59.587 57.143 13.00 0.00 38.47 2.75
347 349 2.108168 CGTTTGGGACCCTCTATCTCA 58.892 52.381 13.00 0.00 0.00 3.27
362 364 5.325239 TCTATCTCAGATCTGCCGGATTTA 58.675 41.667 18.36 9.41 34.33 1.40
365 367 3.706594 TCTCAGATCTGCCGGATTTAACT 59.293 43.478 18.36 0.00 34.33 2.24
387 389 4.448210 TCCGTCACCCTATAAAAATGAGC 58.552 43.478 0.00 0.00 0.00 4.26
405 407 3.365265 GAAGGCGGTGGCACTTGG 61.365 66.667 18.45 8.45 42.47 3.61
441 444 4.068599 TCGATGATAGCAACAAAACCACA 58.931 39.130 0.00 0.00 0.00 4.17
442 445 4.083537 TCGATGATAGCAACAAAACCACAC 60.084 41.667 0.00 0.00 0.00 3.82
490 493 5.690409 TGTGAACATTTACGTTGAGAGAGAC 59.310 40.000 0.00 0.00 0.00 3.36
492 495 3.243336 ACATTTACGTTGAGAGAGACGC 58.757 45.455 0.00 0.00 42.67 5.19
512 515 1.737355 GCCGCATGCACCAACCATAT 61.737 55.000 19.57 0.00 40.77 1.78
514 517 1.952990 CCGCATGCACCAACCATATAA 59.047 47.619 19.57 0.00 0.00 0.98
520 523 6.867816 CGCATGCACCAACCATATAAATAAAT 59.132 34.615 19.57 0.00 0.00 1.40
566 569 8.442632 AAATAACATCATACATGTGAGGACTG 57.557 34.615 9.11 1.28 34.26 3.51
570 573 2.427095 TCATACATGTGAGGACTGACGG 59.573 50.000 9.11 0.00 0.00 4.79
572 575 1.448540 CATGTGAGGACTGACGGCC 60.449 63.158 0.00 0.00 0.00 6.13
605 608 4.527157 GCGCACGCCAGATCAAGC 62.527 66.667 0.30 0.00 34.56 4.01
634 659 1.199097 ACGGTCGATTGTCATTTTGGC 59.801 47.619 0.00 0.00 0.00 4.52
639 664 3.914364 GTCGATTGTCATTTTGGCTGTTC 59.086 43.478 0.00 0.00 0.00 3.18
642 667 4.325204 CGATTGTCATTTTGGCTGTTCATG 59.675 41.667 0.00 0.00 0.00 3.07
643 668 4.933505 TTGTCATTTTGGCTGTTCATGA 57.066 36.364 0.00 0.00 0.00 3.07
644 669 4.241590 TGTCATTTTGGCTGTTCATGAC 57.758 40.909 0.00 4.04 42.72 3.06
645 670 3.236816 GTCATTTTGGCTGTTCATGACG 58.763 45.455 0.00 0.00 35.69 4.35
646 671 2.228582 TCATTTTGGCTGTTCATGACGG 59.771 45.455 0.00 0.00 37.71 4.79
651 676 3.786101 CTGTTCATGACGGCCGAG 58.214 61.111 35.90 18.27 0.00 4.63
652 677 1.811266 CTGTTCATGACGGCCGAGG 60.811 63.158 35.90 13.02 0.00 4.63
710 897 1.070821 CACAGAGCACATACACACGG 58.929 55.000 0.00 0.00 0.00 4.94
756 944 2.866964 CGCGCGCTCTTTTTCAGC 60.867 61.111 30.48 0.00 0.00 4.26
825 1021 2.972625 TGTTTTATCTCTCCCGTGCAG 58.027 47.619 0.00 0.00 0.00 4.41
846 1042 2.876645 CGCTCGCTTCCACTCGAC 60.877 66.667 0.00 0.00 0.00 4.20
849 1046 3.358076 CTCGCTTCCACTCGACCCC 62.358 68.421 0.00 0.00 0.00 4.95
1155 1381 3.665675 GACGGTGCTCAAGGCGGAT 62.666 63.158 0.00 0.00 45.43 4.18
1279 1505 5.116180 TCACTCCATCGAATACCAATCAAC 58.884 41.667 0.00 0.00 0.00 3.18
1282 1508 3.876914 TCCATCGAATACCAATCAACAGC 59.123 43.478 0.00 0.00 0.00 4.40
1283 1509 3.627123 CCATCGAATACCAATCAACAGCA 59.373 43.478 0.00 0.00 0.00 4.41
1297 1528 3.054878 CAACAGCATTTTCTTGCCTGTC 58.945 45.455 0.00 0.00 43.83 3.51
1325 1556 2.158784 AGTTTGTACTTTGTACGGCCCA 60.159 45.455 0.00 0.00 0.00 5.36
1327 1558 1.881591 TGTACTTTGTACGGCCCAAC 58.118 50.000 0.00 0.00 0.00 3.77
1399 1668 7.892771 AGTGTCAATCAGATATATCCTCTGCTA 59.107 37.037 9.18 0.00 39.98 3.49
1400 1669 7.973388 GTGTCAATCAGATATATCCTCTGCTAC 59.027 40.741 9.18 1.78 39.98 3.58
1401 1670 7.671398 TGTCAATCAGATATATCCTCTGCTACA 59.329 37.037 9.18 4.14 39.98 2.74
1402 1671 8.526978 GTCAATCAGATATATCCTCTGCTACAA 58.473 37.037 9.18 0.00 39.98 2.41
1459 1753 3.017442 GTTCCTATTCTTCAGCCCCAAC 58.983 50.000 0.00 0.00 0.00 3.77
1536 1867 7.061566 TGTAGCAACTATATATGACTTGGCA 57.938 36.000 0.00 0.00 0.00 4.92
1538 1869 6.867662 AGCAACTATATATGACTTGGCAAC 57.132 37.500 0.00 0.00 0.00 4.17
1628 2236 1.522668 TGTCTTGGCCATGTCTTTCG 58.477 50.000 17.54 0.00 0.00 3.46
1636 2272 0.609131 CCATGTCTTTCGCCCCAAGT 60.609 55.000 0.00 0.00 0.00 3.16
1642 2278 1.202830 TCTTTCGCCCCAAGTTAGCAA 60.203 47.619 0.00 0.00 0.00 3.91
1643 2279 1.818674 CTTTCGCCCCAAGTTAGCAAT 59.181 47.619 0.00 0.00 0.00 3.56
1665 2301 2.363306 TGGTGAGTTCAGCCACATTT 57.637 45.000 8.67 0.00 43.22 2.32
1682 2318 5.524646 CCACATTTGAGTCAAATTTGTTGCT 59.475 36.000 29.51 13.55 40.60 3.91
1757 2414 1.524863 CGACTGGTGTTCTCCGACCT 61.525 60.000 0.00 0.00 32.98 3.85
1768 2425 1.137513 CTCCGACCTTGACGTTGAAC 58.862 55.000 0.00 0.00 0.00 3.18
1835 2496 8.531146 TGAGTTTGTGATTGATATACTCACTCA 58.469 33.333 0.00 0.00 40.21 3.41
1904 2565 1.541310 CGTACCTGGCCTTGTCCTCA 61.541 60.000 3.32 0.00 0.00 3.86
1969 2630 4.760047 CGCAGGGGTCTCCAACGG 62.760 72.222 0.00 0.00 38.24 4.44
2567 3243 2.107546 AACCGCTTCGACCACGTT 59.892 55.556 0.00 0.00 40.69 3.99
2726 3415 6.977502 GCACTAGATTCATCATCTGCGTATAT 59.022 38.462 0.00 0.00 42.76 0.86
2727 3416 8.131731 GCACTAGATTCATCATCTGCGTATATA 58.868 37.037 0.00 0.00 42.76 0.86
2826 3537 5.130975 AGTTGTATATCCATCACTTGCCTGA 59.869 40.000 0.00 0.00 0.00 3.86
2832 3543 4.789012 TCCATCACTTGCCTGATTTTTC 57.211 40.909 0.00 0.00 0.00 2.29
2834 3545 4.460382 TCCATCACTTGCCTGATTTTTCTC 59.540 41.667 0.00 0.00 0.00 2.87
2882 3593 4.463515 CAAGGATTGTACATCATCTGCG 57.536 45.455 0.00 0.00 42.34 5.18
3000 3735 6.106673 TCTCCAAAGTCCGAGTCATATTTTC 58.893 40.000 0.00 0.00 0.00 2.29
3058 3793 9.499479 CTCTAAGTCACTCCATGCATAATTTAT 57.501 33.333 0.00 0.00 0.00 1.40
3063 3798 9.935241 AGTCACTCCATGCATAATTTATACTAG 57.065 33.333 0.00 0.00 0.00 2.57
3064 3799 9.712305 GTCACTCCATGCATAATTTATACTAGT 57.288 33.333 0.00 0.00 0.00 2.57
3065 3800 9.710900 TCACTCCATGCATAATTTATACTAGTG 57.289 33.333 5.39 0.00 0.00 2.74
3066 3801 8.446273 CACTCCATGCATAATTTATACTAGTGC 58.554 37.037 5.39 0.00 0.00 4.40
3067 3802 7.607991 ACTCCATGCATAATTTATACTAGTGCC 59.392 37.037 5.39 0.00 0.00 5.01
3068 3803 7.457561 TCCATGCATAATTTATACTAGTGCCA 58.542 34.615 5.39 0.00 0.00 4.92
3069 3804 7.941790 TCCATGCATAATTTATACTAGTGCCAA 59.058 33.333 5.39 0.00 0.00 4.52
3070 3805 8.575589 CCATGCATAATTTATACTAGTGCCAAA 58.424 33.333 5.39 3.39 0.00 3.28
3071 3806 9.964303 CATGCATAATTTATACTAGTGCCAAAA 57.036 29.630 5.39 1.25 0.00 2.44
3073 3808 9.796120 TGCATAATTTATACTAGTGCCAAAAAC 57.204 29.630 5.39 0.00 0.00 2.43
3074 3809 8.953990 GCATAATTTATACTAGTGCCAAAAACG 58.046 33.333 5.39 0.00 0.00 3.60
3075 3810 8.953990 CATAATTTATACTAGTGCCAAAAACGC 58.046 33.333 5.39 0.00 0.00 4.84
3076 3811 6.753107 ATTTATACTAGTGCCAAAAACGCT 57.247 33.333 5.39 0.00 0.00 5.07
3077 3812 6.563222 TTTATACTAGTGCCAAAAACGCTT 57.437 33.333 5.39 0.00 0.00 4.68
3078 3813 6.563222 TTATACTAGTGCCAAAAACGCTTT 57.437 33.333 5.39 0.00 0.00 3.51
3079 3814 3.793797 ACTAGTGCCAAAAACGCTTTT 57.206 38.095 0.00 0.00 35.02 2.27
3080 3815 4.118093 ACTAGTGCCAAAAACGCTTTTT 57.882 36.364 0.00 0.00 43.20 1.94
3081 3816 5.251601 ACTAGTGCCAAAAACGCTTTTTA 57.748 34.783 0.86 0.00 40.65 1.52
3082 3817 5.838529 ACTAGTGCCAAAAACGCTTTTTAT 58.161 33.333 0.86 0.00 40.65 1.40
3083 3818 6.972722 ACTAGTGCCAAAAACGCTTTTTATA 58.027 32.000 0.86 0.00 40.65 0.98
3084 3819 7.599171 ACTAGTGCCAAAAACGCTTTTTATAT 58.401 30.769 0.86 0.00 40.65 0.86
3085 3820 8.085909 ACTAGTGCCAAAAACGCTTTTTATATT 58.914 29.630 0.86 0.00 40.65 1.28
3086 3821 7.722795 AGTGCCAAAAACGCTTTTTATATTT 57.277 28.000 0.86 0.00 40.65 1.40
3087 3822 8.148807 AGTGCCAAAAACGCTTTTTATATTTT 57.851 26.923 0.86 0.00 40.65 1.82
3088 3823 8.067189 AGTGCCAAAAACGCTTTTTATATTTTG 58.933 29.630 0.86 0.00 40.65 2.44
3093 3828 9.922305 CAAAAACGCTTTTTATATTTTGGACAA 57.078 25.926 0.86 0.00 40.65 3.18
3095 3830 9.535878 AAAACGCTTTTTATATTTTGGACAAGA 57.464 25.926 0.00 0.00 32.90 3.02
3096 3831 8.742554 AACGCTTTTTATATTTTGGACAAGAG 57.257 30.769 0.00 0.00 0.00 2.85
3097 3832 7.312899 ACGCTTTTTATATTTTGGACAAGAGG 58.687 34.615 0.00 0.00 0.00 3.69
3098 3833 6.751888 CGCTTTTTATATTTTGGACAAGAGGG 59.248 38.462 0.00 0.00 0.00 4.30
3099 3834 7.362574 CGCTTTTTATATTTTGGACAAGAGGGA 60.363 37.037 0.00 0.00 0.00 4.20
3100 3835 7.976175 GCTTTTTATATTTTGGACAAGAGGGAG 59.024 37.037 0.00 0.00 0.00 4.30
3101 3836 8.950007 TTTTTATATTTTGGACAAGAGGGAGT 57.050 30.769 0.00 0.00 0.00 3.85
3103 3838 9.457436 TTTTATATTTTGGACAAGAGGGAGTAC 57.543 33.333 0.00 0.00 0.00 2.73
3104 3839 4.993705 ATTTTGGACAAGAGGGAGTACA 57.006 40.909 0.00 0.00 0.00 2.90
3105 3840 4.781775 TTTTGGACAAGAGGGAGTACAA 57.218 40.909 0.00 0.00 36.82 2.41
3106 3841 4.781775 TTTGGACAAGAGGGAGTACAAA 57.218 40.909 0.00 0.00 44.06 2.83
3107 3842 3.764237 TGGACAAGAGGGAGTACAAAC 57.236 47.619 0.00 0.00 0.00 2.93
3262 3997 6.315393 TCCAACTTTCAACTTGTAGAAGTGAC 59.685 38.462 5.96 0.00 41.87 3.67
3271 4006 7.771361 TCAACTTGTAGAAGTGACCATTTGTAA 59.229 33.333 5.96 0.00 41.87 2.41
3311 4047 4.718961 AGTGCTCACCTCTACAAATTGTT 58.281 39.130 3.17 0.00 0.00 2.83
3335 4071 0.916086 AAACACTCTGGGGACACACA 59.084 50.000 0.00 0.00 35.60 3.72
3336 4072 0.916086 AACACTCTGGGGACACACAA 59.084 50.000 0.00 0.00 35.60 3.33
3368 4104 2.223144 GCCATTTTGAAGCCGGTTTTTC 59.777 45.455 4.57 6.76 0.00 2.29
3371 4107 3.897141 TTTTGAAGCCGGTTTTTCCTT 57.103 38.095 4.57 0.00 0.00 3.36
3372 4108 3.897141 TTTGAAGCCGGTTTTTCCTTT 57.103 38.095 4.57 0.00 0.00 3.11
3400 4136 5.096443 TCTTTTGCTGGGTTTTCAATTGT 57.904 34.783 5.13 0.00 0.00 2.71
3516 4253 9.487790 TCTTTTCATGAGTTTCAAAAAGTGTTT 57.512 25.926 11.58 0.00 36.41 2.83
3534 4271 9.900710 AAAGTGTTTACAAAATTTGGGAAAAAC 57.099 25.926 13.88 13.88 32.39 2.43
3577 4314 7.788846 CACACTGTTAAAATTTGAAATTGCTCG 59.211 33.333 3.62 0.00 0.00 5.03
3578 4315 6.787043 CACTGTTAAAATTTGAAATTGCTCGC 59.213 34.615 3.62 0.00 0.00 5.03
3593 4331 9.464248 GAAATTGCTCGCAAATTTTACTAAATG 57.536 29.630 8.54 0.00 39.55 2.32
3598 4336 7.649705 TGCTCGCAAATTTTACTAAATGTTCAA 59.350 29.630 0.00 0.00 34.27 2.69
3601 4339 9.393249 TCGCAAATTTTACTAAATGTTCAAGAG 57.607 29.630 0.00 0.00 34.27 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.649277 CTCGAAGTGGCCCAGGACG 62.649 68.421 0.00 0.00 0.00 4.79
2 3 3.706373 GCTCGAAGTGGCCCAGGA 61.706 66.667 0.00 0.00 0.00 3.86
3 4 3.965539 CTGCTCGAAGTGGCCCAGG 62.966 68.421 0.00 0.00 0.00 4.45
4 5 2.435586 CTGCTCGAAGTGGCCCAG 60.436 66.667 0.00 0.00 0.00 4.45
8 9 3.984193 ATGGGCTGCTCGAAGTGGC 62.984 63.158 0.00 0.00 0.00 5.01
9 10 2.110967 CATGGGCTGCTCGAAGTGG 61.111 63.158 0.00 0.00 0.00 4.00
10 11 2.110967 CCATGGGCTGCTCGAAGTG 61.111 63.158 2.85 0.00 0.00 3.16
12 13 2.110967 CACCATGGGCTGCTCGAAG 61.111 63.158 18.09 0.00 0.00 3.79
14 15 4.783621 GCACCATGGGCTGCTCGA 62.784 66.667 18.09 0.00 30.89 4.04
15 16 2.946172 TATGCACCATGGGCTGCTCG 62.946 60.000 23.49 2.89 33.31 5.03
16 17 1.152902 TATGCACCATGGGCTGCTC 60.153 57.895 23.49 0.00 33.31 4.26
17 18 1.454479 GTATGCACCATGGGCTGCT 60.454 57.895 23.49 13.83 33.31 4.24
18 19 1.321805 TTGTATGCACCATGGGCTGC 61.322 55.000 18.09 18.13 32.96 5.25
19 20 0.742505 CTTGTATGCACCATGGGCTG 59.257 55.000 18.09 7.40 0.00 4.85
21 22 1.473258 TTCTTGTATGCACCATGGGC 58.527 50.000 18.09 16.81 0.00 5.36
22 23 3.355378 TCTTTCTTGTATGCACCATGGG 58.645 45.455 18.09 6.26 0.00 4.00
23 24 5.450965 GGAATCTTTCTTGTATGCACCATGG 60.451 44.000 11.19 11.19 0.00 3.66
24 25 5.125900 TGGAATCTTTCTTGTATGCACCATG 59.874 40.000 0.00 0.00 0.00 3.66
25 26 5.126061 GTGGAATCTTTCTTGTATGCACCAT 59.874 40.000 0.00 0.00 0.00 3.55
26 27 4.458989 GTGGAATCTTTCTTGTATGCACCA 59.541 41.667 0.00 0.00 0.00 4.17
27 28 4.458989 TGTGGAATCTTTCTTGTATGCACC 59.541 41.667 0.00 0.00 0.00 5.01
28 29 5.627499 TGTGGAATCTTTCTTGTATGCAC 57.373 39.130 0.00 0.00 0.00 4.57
29 30 6.003326 TCTTGTGGAATCTTTCTTGTATGCA 58.997 36.000 0.00 0.00 0.00 3.96
30 31 6.150140 AGTCTTGTGGAATCTTTCTTGTATGC 59.850 38.462 0.00 0.00 0.00 3.14
31 32 7.678947 AGTCTTGTGGAATCTTTCTTGTATG 57.321 36.000 0.00 0.00 0.00 2.39
32 33 9.442047 CTAAGTCTTGTGGAATCTTTCTTGTAT 57.558 33.333 0.00 0.00 0.00 2.29
33 34 7.387948 GCTAAGTCTTGTGGAATCTTTCTTGTA 59.612 37.037 0.00 0.00 0.00 2.41
35 36 6.205464 TGCTAAGTCTTGTGGAATCTTTCTTG 59.795 38.462 0.00 0.00 0.00 3.02
36 37 6.299141 TGCTAAGTCTTGTGGAATCTTTCTT 58.701 36.000 0.00 0.00 0.00 2.52
37 38 5.869579 TGCTAAGTCTTGTGGAATCTTTCT 58.130 37.500 0.00 0.00 0.00 2.52
38 39 6.749923 ATGCTAAGTCTTGTGGAATCTTTC 57.250 37.500 0.00 0.00 0.00 2.62
39 40 7.168219 TGTATGCTAAGTCTTGTGGAATCTTT 58.832 34.615 0.00 0.00 0.00 2.52
40 41 6.711277 TGTATGCTAAGTCTTGTGGAATCTT 58.289 36.000 0.00 0.00 0.00 2.40
44 45 5.932303 GTCTTGTATGCTAAGTCTTGTGGAA 59.068 40.000 0.00 0.00 0.00 3.53
45 46 5.011635 TGTCTTGTATGCTAAGTCTTGTGGA 59.988 40.000 0.00 0.00 0.00 4.02
46 47 5.237815 TGTCTTGTATGCTAAGTCTTGTGG 58.762 41.667 0.00 0.00 0.00 4.17
47 48 6.646653 TCTTGTCTTGTATGCTAAGTCTTGTG 59.353 38.462 0.00 0.00 0.00 3.33
48 49 6.759272 TCTTGTCTTGTATGCTAAGTCTTGT 58.241 36.000 0.00 0.00 0.00 3.16
49 50 7.386299 AGTTCTTGTCTTGTATGCTAAGTCTTG 59.614 37.037 0.00 0.00 0.00 3.02
50 51 7.445945 AGTTCTTGTCTTGTATGCTAAGTCTT 58.554 34.615 0.00 0.00 0.00 3.01
52 53 6.311690 GGAGTTCTTGTCTTGTATGCTAAGTC 59.688 42.308 0.00 0.00 0.00 3.01
53 54 6.014156 AGGAGTTCTTGTCTTGTATGCTAAGT 60.014 38.462 0.00 0.00 0.00 2.24
54 55 6.402222 AGGAGTTCTTGTCTTGTATGCTAAG 58.598 40.000 0.00 0.00 0.00 2.18
55 56 6.211584 AGAGGAGTTCTTGTCTTGTATGCTAA 59.788 38.462 0.00 0.00 29.61 3.09
58 59 4.826556 AGAGGAGTTCTTGTCTTGTATGC 58.173 43.478 0.00 0.00 29.61 3.14
59 60 5.047021 TGGAGAGGAGTTCTTGTCTTGTATG 60.047 44.000 0.00 0.00 35.87 2.39
60 61 5.046950 GTGGAGAGGAGTTCTTGTCTTGTAT 60.047 44.000 0.00 0.00 35.87 2.29
62 63 3.070302 GTGGAGAGGAGTTCTTGTCTTGT 59.930 47.826 0.00 0.00 35.87 3.16
63 64 3.556004 GGTGGAGAGGAGTTCTTGTCTTG 60.556 52.174 0.00 0.00 35.87 3.02
64 65 2.635427 GGTGGAGAGGAGTTCTTGTCTT 59.365 50.000 0.00 0.00 35.87 3.01
67 68 0.969894 CGGTGGAGAGGAGTTCTTGT 59.030 55.000 0.00 0.00 35.87 3.16
68 69 1.067495 GTCGGTGGAGAGGAGTTCTTG 60.067 57.143 0.00 0.00 35.87 3.02
69 70 1.258676 GTCGGTGGAGAGGAGTTCTT 58.741 55.000 0.00 0.00 35.87 2.52
70 71 0.961358 CGTCGGTGGAGAGGAGTTCT 60.961 60.000 0.00 0.00 39.43 3.01
71 72 1.242665 ACGTCGGTGGAGAGGAGTTC 61.243 60.000 0.00 0.00 0.00 3.01
72 73 0.037303 TACGTCGGTGGAGAGGAGTT 59.963 55.000 0.00 0.00 0.00 3.01
74 75 1.716826 GCTACGTCGGTGGAGAGGAG 61.717 65.000 0.00 0.00 0.00 3.69
75 76 1.748122 GCTACGTCGGTGGAGAGGA 60.748 63.158 0.00 0.00 0.00 3.71
76 77 1.749638 AGCTACGTCGGTGGAGAGG 60.750 63.158 0.00 0.00 0.00 3.69
77 78 1.025113 TCAGCTACGTCGGTGGAGAG 61.025 60.000 17.78 0.00 33.43 3.20
78 79 1.002990 TCAGCTACGTCGGTGGAGA 60.003 57.895 17.78 0.00 33.43 3.71
82 83 1.085091 ACTAGTCAGCTACGTCGGTG 58.915 55.000 12.62 12.62 0.00 4.94
83 84 2.093764 AGTACTAGTCAGCTACGTCGGT 60.094 50.000 0.00 0.00 0.00 4.69
84 85 2.539274 GAGTACTAGTCAGCTACGTCGG 59.461 54.545 0.00 0.00 0.00 4.79
85 86 2.539274 GGAGTACTAGTCAGCTACGTCG 59.461 54.545 0.00 0.00 0.00 5.12
86 87 3.556775 CAGGAGTACTAGTCAGCTACGTC 59.443 52.174 0.00 0.00 0.00 4.34
87 88 3.055240 ACAGGAGTACTAGTCAGCTACGT 60.055 47.826 0.00 0.00 0.00 3.57
88 89 3.533547 ACAGGAGTACTAGTCAGCTACG 58.466 50.000 0.00 0.00 0.00 3.51
89 90 6.205270 GGATAACAGGAGTACTAGTCAGCTAC 59.795 46.154 0.00 0.00 0.00 3.58
90 91 6.297582 GGATAACAGGAGTACTAGTCAGCTA 58.702 44.000 0.00 0.00 0.00 3.32
92 93 4.278919 GGGATAACAGGAGTACTAGTCAGC 59.721 50.000 0.00 0.00 0.00 4.26
93 94 5.446860 TGGGATAACAGGAGTACTAGTCAG 58.553 45.833 0.00 0.00 0.00 3.51
115 116 6.109359 GCTTATATAATGTACCAGAGGCCTG 58.891 44.000 12.00 0.00 40.09 4.85
116 117 5.189934 GGCTTATATAATGTACCAGAGGCCT 59.810 44.000 3.86 3.86 0.00 5.19
117 118 5.429130 GGCTTATATAATGTACCAGAGGCC 58.571 45.833 0.00 0.00 0.00 5.19
118 119 5.105473 TCGGCTTATATAATGTACCAGAGGC 60.105 44.000 0.00 0.00 0.00 4.70
119 120 6.377429 TCTCGGCTTATATAATGTACCAGAGG 59.623 42.308 0.00 0.00 0.00 3.69
120 121 7.251994 GTCTCGGCTTATATAATGTACCAGAG 58.748 42.308 0.00 7.27 0.00 3.35
123 124 5.776208 TGGTCTCGGCTTATATAATGTACCA 59.224 40.000 0.00 2.73 0.00 3.25
124 125 6.276832 TGGTCTCGGCTTATATAATGTACC 57.723 41.667 0.00 0.40 0.00 3.34
125 126 6.331061 CCTGGTCTCGGCTTATATAATGTAC 58.669 44.000 0.00 0.00 0.00 2.90
126 127 5.105473 GCCTGGTCTCGGCTTATATAATGTA 60.105 44.000 0.00 0.00 44.17 2.29
127 128 4.322801 GCCTGGTCTCGGCTTATATAATGT 60.323 45.833 0.00 0.00 44.17 2.71
128 129 4.184629 GCCTGGTCTCGGCTTATATAATG 58.815 47.826 0.00 0.00 44.17 1.90
129 130 4.473477 GCCTGGTCTCGGCTTATATAAT 57.527 45.455 0.00 0.00 44.17 1.28
130 131 3.955650 GCCTGGTCTCGGCTTATATAA 57.044 47.619 0.00 0.00 44.17 0.98
139 140 0.820074 ATCGACTAGCCTGGTCTCGG 60.820 60.000 6.65 0.00 0.00 4.63
140 141 1.801771 CTATCGACTAGCCTGGTCTCG 59.198 57.143 6.65 0.00 0.00 4.04
143 144 5.883673 AGATAATCTATCGACTAGCCTGGTC 59.116 44.000 0.00 0.00 40.12 4.02
144 145 5.822204 AGATAATCTATCGACTAGCCTGGT 58.178 41.667 0.00 0.00 40.12 4.00
147 148 9.169592 GAGTTAAGATAATCTATCGACTAGCCT 57.830 37.037 0.00 0.00 40.12 4.58
164 165 7.379797 CGTGATCGTATGTGAATGAGTTAAGAT 59.620 37.037 0.00 0.00 0.00 2.40
166 167 6.691388 TCGTGATCGTATGTGAATGAGTTAAG 59.309 38.462 0.00 0.00 38.33 1.85
169 170 4.993905 TCGTGATCGTATGTGAATGAGTT 58.006 39.130 0.00 0.00 38.33 3.01
170 171 4.498177 CCTCGTGATCGTATGTGAATGAGT 60.498 45.833 0.00 0.00 38.33 3.41
171 172 3.977579 CCTCGTGATCGTATGTGAATGAG 59.022 47.826 0.00 0.00 38.33 2.90
172 173 3.380320 ACCTCGTGATCGTATGTGAATGA 59.620 43.478 0.00 0.00 38.33 2.57
173 174 3.706698 ACCTCGTGATCGTATGTGAATG 58.293 45.455 0.00 0.00 38.33 2.67
174 175 4.820173 TCTACCTCGTGATCGTATGTGAAT 59.180 41.667 0.00 0.00 38.33 2.57
177 178 4.213482 TGATCTACCTCGTGATCGTATGTG 59.787 45.833 0.00 0.00 41.24 3.21
178 179 4.386711 TGATCTACCTCGTGATCGTATGT 58.613 43.478 0.00 0.00 41.24 2.29
179 180 5.049336 AGTTGATCTACCTCGTGATCGTATG 60.049 44.000 3.54 0.00 41.24 2.39
180 181 5.064558 AGTTGATCTACCTCGTGATCGTAT 58.935 41.667 3.54 0.00 41.24 3.06
181 182 4.449131 AGTTGATCTACCTCGTGATCGTA 58.551 43.478 3.54 0.00 41.24 3.43
182 183 3.280295 AGTTGATCTACCTCGTGATCGT 58.720 45.455 3.54 0.00 41.24 3.73
183 184 3.972950 AGTTGATCTACCTCGTGATCG 57.027 47.619 3.54 0.00 41.24 3.69
184 185 5.000012 ACAAGTTGATCTACCTCGTGATC 58.000 43.478 10.54 0.00 39.43 2.92
185 186 5.652891 AGTACAAGTTGATCTACCTCGTGAT 59.347 40.000 10.54 0.00 0.00 3.06
188 189 5.124138 CAGAGTACAAGTTGATCTACCTCGT 59.876 44.000 10.54 2.05 0.00 4.18
190 191 6.518208 ACAGAGTACAAGTTGATCTACCTC 57.482 41.667 10.54 3.53 0.00 3.85
191 192 6.377712 GGTACAGAGTACAAGTTGATCTACCT 59.622 42.308 10.54 0.00 0.00 3.08
192 193 6.405619 GGGTACAGAGTACAAGTTGATCTACC 60.406 46.154 10.54 13.23 0.00 3.18
193 194 6.405619 GGGGTACAGAGTACAAGTTGATCTAC 60.406 46.154 10.54 1.90 0.00 2.59
195 196 4.466726 GGGGTACAGAGTACAAGTTGATCT 59.533 45.833 10.54 7.05 0.00 2.75
196 197 4.222145 TGGGGTACAGAGTACAAGTTGATC 59.778 45.833 10.54 4.74 0.00 2.92
197 198 4.164981 TGGGGTACAGAGTACAAGTTGAT 58.835 43.478 10.54 0.00 0.00 2.57
198 199 3.578978 TGGGGTACAGAGTACAAGTTGA 58.421 45.455 10.54 0.00 0.00 3.18
199 200 4.504858 GATGGGGTACAGAGTACAAGTTG 58.495 47.826 0.00 0.00 0.00 3.16
200 201 3.518303 GGATGGGGTACAGAGTACAAGTT 59.482 47.826 9.27 0.00 0.00 2.66
201 202 3.105283 GGATGGGGTACAGAGTACAAGT 58.895 50.000 9.27 0.00 0.00 3.16
202 203 3.104512 TGGATGGGGTACAGAGTACAAG 58.895 50.000 9.27 0.00 0.00 3.16
203 204 2.835764 GTGGATGGGGTACAGAGTACAA 59.164 50.000 9.27 0.00 0.00 2.41
206 207 2.932184 TGTGGATGGGGTACAGAGTA 57.068 50.000 0.00 0.00 0.00 2.59
207 208 2.038863 TTGTGGATGGGGTACAGAGT 57.961 50.000 0.00 0.00 0.00 3.24
208 209 2.505407 TGATTGTGGATGGGGTACAGAG 59.495 50.000 0.00 0.00 0.00 3.35
210 211 3.364460 TTGATTGTGGATGGGGTACAG 57.636 47.619 0.00 0.00 0.00 2.74
211 212 4.228438 TGTATTGATTGTGGATGGGGTACA 59.772 41.667 0.00 0.00 0.00 2.90
212 213 4.787551 TGTATTGATTGTGGATGGGGTAC 58.212 43.478 0.00 0.00 0.00 3.34
214 215 4.329638 TTGTATTGATTGTGGATGGGGT 57.670 40.909 0.00 0.00 0.00 4.95
216 217 7.439056 GCTTTATTTGTATTGATTGTGGATGGG 59.561 37.037 0.00 0.00 0.00 4.00
217 218 7.980662 TGCTTTATTTGTATTGATTGTGGATGG 59.019 33.333 0.00 0.00 0.00 3.51
218 219 8.929827 TGCTTTATTTGTATTGATTGTGGATG 57.070 30.769 0.00 0.00 0.00 3.51
219 220 9.537192 CATGCTTTATTTGTATTGATTGTGGAT 57.463 29.630 0.00 0.00 0.00 3.41
221 222 8.929827 TCATGCTTTATTTGTATTGATTGTGG 57.070 30.769 0.00 0.00 0.00 4.17
245 246 7.647907 TCTCAACGAGGTAAAACTTTACATC 57.352 36.000 14.14 14.14 45.69 3.06
248 249 6.849811 GCTTTCTCAACGAGGTAAAACTTTAC 59.150 38.462 4.11 4.11 41.68 2.01
249 250 6.017687 GGCTTTCTCAACGAGGTAAAACTTTA 60.018 38.462 0.00 0.00 0.00 1.85
250 251 5.220989 GGCTTTCTCAACGAGGTAAAACTTT 60.221 40.000 0.00 0.00 0.00 2.66
251 252 4.275196 GGCTTTCTCAACGAGGTAAAACTT 59.725 41.667 0.00 0.00 0.00 2.66
252 253 3.813724 GGCTTTCTCAACGAGGTAAAACT 59.186 43.478 0.00 0.00 0.00 2.66
253 254 3.058432 GGGCTTTCTCAACGAGGTAAAAC 60.058 47.826 0.00 0.00 0.00 2.43
254 255 3.143728 GGGCTTTCTCAACGAGGTAAAA 58.856 45.455 0.00 0.00 0.00 1.52
256 257 1.337447 CGGGCTTTCTCAACGAGGTAA 60.337 52.381 0.00 0.00 0.00 2.85
257 258 0.245539 CGGGCTTTCTCAACGAGGTA 59.754 55.000 0.00 0.00 0.00 3.08
258 259 1.004918 CGGGCTTTCTCAACGAGGT 60.005 57.895 0.00 0.00 0.00 3.85
259 260 0.320421 TTCGGGCTTTCTCAACGAGG 60.320 55.000 0.00 0.00 34.85 4.63
260 261 0.790814 GTTCGGGCTTTCTCAACGAG 59.209 55.000 0.00 0.00 34.85 4.18
262 263 0.882927 TGGTTCGGGCTTTCTCAACG 60.883 55.000 0.00 0.00 0.00 4.10
263 264 1.266989 CTTGGTTCGGGCTTTCTCAAC 59.733 52.381 0.00 0.00 0.00 3.18
264 265 1.142060 TCTTGGTTCGGGCTTTCTCAA 59.858 47.619 0.00 0.00 0.00 3.02
265 266 0.762418 TCTTGGTTCGGGCTTTCTCA 59.238 50.000 0.00 0.00 0.00 3.27
266 267 2.115343 ATCTTGGTTCGGGCTTTCTC 57.885 50.000 0.00 0.00 0.00 2.87
269 270 3.492337 TGTTTATCTTGGTTCGGGCTTT 58.508 40.909 0.00 0.00 0.00 3.51
270 271 3.149005 TGTTTATCTTGGTTCGGGCTT 57.851 42.857 0.00 0.00 0.00 4.35
271 272 2.871096 TGTTTATCTTGGTTCGGGCT 57.129 45.000 0.00 0.00 0.00 5.19
272 273 3.013921 TGATGTTTATCTTGGTTCGGGC 58.986 45.455 0.00 0.00 34.31 6.13
273 274 4.640201 ACATGATGTTTATCTTGGTTCGGG 59.360 41.667 0.00 0.00 40.76 5.14
274 275 5.586243 AGACATGATGTTTATCTTGGTTCGG 59.414 40.000 0.00 0.00 40.76 4.30
275 276 6.238211 GGAGACATGATGTTTATCTTGGTTCG 60.238 42.308 0.00 0.00 40.76 3.95
281 282 7.192852 ACAGAGGAGACATGATGTTTATCTT 57.807 36.000 0.00 0.00 34.31 2.40
283 284 7.439655 GGTAACAGAGGAGACATGATGTTTATC 59.560 40.741 0.00 0.00 33.31 1.75
327 329 2.101582 CTGAGATAGAGGGTCCCAAACG 59.898 54.545 11.55 0.00 0.00 3.60
329 331 3.776731 TCTGAGATAGAGGGTCCCAAA 57.223 47.619 11.55 0.00 0.00 3.28
338 340 2.789213 TCCGGCAGATCTGAGATAGAG 58.211 52.381 27.04 6.91 39.20 2.43
339 341 2.959465 TCCGGCAGATCTGAGATAGA 57.041 50.000 27.04 11.44 40.37 1.98
344 346 4.054671 GAGTTAAATCCGGCAGATCTGAG 58.945 47.826 27.04 17.78 32.47 3.35
346 348 3.134458 GGAGTTAAATCCGGCAGATCTG 58.866 50.000 18.84 18.84 32.47 2.90
347 349 3.477210 GGAGTTAAATCCGGCAGATCT 57.523 47.619 6.14 0.00 32.47 2.75
365 367 4.448210 GCTCATTTTTATAGGGTGACGGA 58.552 43.478 0.00 0.00 0.00 4.69
387 389 3.726517 CAAGTGCCACCGCCTTCG 61.727 66.667 0.00 0.00 0.00 3.79
441 444 3.097614 ACGAAGCAGATAAGGGTACAGT 58.902 45.455 0.00 0.00 0.00 3.55
442 445 3.802948 ACGAAGCAGATAAGGGTACAG 57.197 47.619 0.00 0.00 0.00 2.74
525 528 8.898761 TGATGTTATTTTTAATAGACGCATGGT 58.101 29.630 0.00 0.00 0.00 3.55
526 529 9.897744 ATGATGTTATTTTTAATAGACGCATGG 57.102 29.630 0.00 0.00 0.00 3.66
549 552 2.427095 CCGTCAGTCCTCACATGTATGA 59.573 50.000 0.00 0.00 0.00 2.15
596 599 3.003689 ACCGTTCAACTTTGCTTGATCTG 59.996 43.478 0.00 0.00 30.19 2.90
605 608 3.001838 TGACAATCGACCGTTCAACTTTG 59.998 43.478 0.00 0.00 0.00 2.77
634 659 1.811266 CCTCGGCCGTCATGAACAG 60.811 63.158 27.15 12.32 0.00 3.16
639 664 1.464376 ATACTCCCTCGGCCGTCATG 61.464 60.000 27.15 14.85 0.00 3.07
642 667 0.526662 CATATACTCCCTCGGCCGTC 59.473 60.000 27.15 0.00 0.00 4.79
643 668 0.111832 TCATATACTCCCTCGGCCGT 59.888 55.000 27.15 7.03 0.00 5.68
644 669 1.475403 ATCATATACTCCCTCGGCCG 58.525 55.000 22.12 22.12 0.00 6.13
645 670 4.215908 TCATATCATATACTCCCTCGGCC 58.784 47.826 0.00 0.00 0.00 6.13
646 671 5.335269 CGATCATATCATATACTCCCTCGGC 60.335 48.000 0.00 0.00 0.00 5.54
647 672 5.335269 GCGATCATATCATATACTCCCTCGG 60.335 48.000 0.00 0.00 0.00 4.63
649 674 5.536538 TGGCGATCATATCATATACTCCCTC 59.463 44.000 0.00 0.00 0.00 4.30
650 675 5.458595 TGGCGATCATATCATATACTCCCT 58.541 41.667 0.00 0.00 0.00 4.20
651 676 5.791336 TGGCGATCATATCATATACTCCC 57.209 43.478 0.00 0.00 0.00 4.30
652 677 5.636965 GCATGGCGATCATATCATATACTCC 59.363 44.000 0.00 0.00 34.12 3.85
710 897 3.006217 AGGAGTACCTACGTTTGTTCCAC 59.994 47.826 0.00 0.00 45.83 4.02
756 944 6.915544 ACATTCTGCTTCTATATGTGTGTG 57.084 37.500 0.00 0.00 0.00 3.82
846 1042 0.536460 AATTTATAGGCCGCACGGGG 60.536 55.000 11.65 0.50 35.78 5.73
849 1046 0.040425 GGCAATTTATAGGCCGCACG 60.040 55.000 0.00 0.00 38.04 5.34
1155 1381 1.573932 CATGCCGTTGTGCGAGAAA 59.426 52.632 0.00 0.00 44.77 2.52
1279 1505 1.973138 CGACAGGCAAGAAAATGCTG 58.027 50.000 0.00 0.00 45.68 4.41
1297 1528 5.284660 CCGTACAAAGTACAAACTAGTAGCG 59.715 44.000 0.00 0.00 33.75 4.26
1352 1606 8.821147 ACACTGTGAACGTGTTATCTAATTTA 57.179 30.769 15.86 0.00 42.56 1.40
1353 1607 7.439955 TGACACTGTGAACGTGTTATCTAATTT 59.560 33.333 15.86 0.00 44.95 1.82
1399 1668 7.624360 TGTTGATTACACTTTCTCTGTTTGT 57.376 32.000 0.00 0.00 0.00 2.83
1524 1855 3.531538 CACGTAGGTTGCCAAGTCATAT 58.468 45.455 0.00 0.00 0.00 1.78
1525 1856 2.933492 GCACGTAGGTTGCCAAGTCATA 60.933 50.000 0.00 0.00 0.00 2.15
1526 1857 1.808411 CACGTAGGTTGCCAAGTCAT 58.192 50.000 0.00 0.00 0.00 3.06
1527 1858 0.882927 GCACGTAGGTTGCCAAGTCA 60.883 55.000 0.00 0.00 0.00 3.41
1536 1867 1.165270 GCCAAATCTGCACGTAGGTT 58.835 50.000 0.00 0.00 0.00 3.50
1538 1869 1.705337 CCGCCAAATCTGCACGTAGG 61.705 60.000 0.00 0.00 0.00 3.18
1628 2236 3.031013 ACCAATATTGCTAACTTGGGGC 58.969 45.455 10.11 0.00 41.97 5.80
1636 2272 4.640201 GGCTGAACTCACCAATATTGCTAA 59.360 41.667 10.11 0.00 0.00 3.09
1642 2278 3.719268 TGTGGCTGAACTCACCAATAT 57.281 42.857 3.55 0.00 34.63 1.28
1643 2279 3.719268 ATGTGGCTGAACTCACCAATA 57.281 42.857 3.55 0.00 34.63 1.90
1665 2301 5.450592 TGCATAGCAACAAATTTGACTCA 57.549 34.783 24.64 9.82 34.76 3.41
1682 2318 6.866248 ACATTACACGTCGATCATTATGCATA 59.134 34.615 1.16 1.16 0.00 3.14
1723 2380 1.394917 CAGTCGCTTTTCTCCCGATTG 59.605 52.381 0.00 0.00 33.61 2.67
1757 2414 1.666700 CCTTCAACCGTTCAACGTCAA 59.333 47.619 9.52 0.00 40.58 3.18
1768 2425 5.449304 GTGTTGAAAGTTATCCTTCAACCG 58.551 41.667 18.72 0.00 38.74 4.44
1775 2432 7.797038 AAGTTTACGTGTTGAAAGTTATCCT 57.203 32.000 0.00 0.00 0.00 3.24
1845 2506 1.154016 GCTTGTCAGCTGCATGCAG 60.154 57.895 37.81 37.81 45.94 4.41
1904 2565 1.841663 CGTAGTTGGCGTTGCTGCTT 61.842 55.000 0.00 0.00 34.52 3.91
1958 2619 1.098712 TGTTTGTGCCGTTGGAGACC 61.099 55.000 0.00 0.00 0.00 3.85
1969 2630 3.234368 CACAGTTCCGTGTTTGTGC 57.766 52.632 0.00 0.00 35.11 4.57
2390 3066 3.755628 GCGTAGTGCAGGTCCGGA 61.756 66.667 0.00 0.00 45.45 5.14
2496 3172 2.034999 GGCGTTCATGTCCCCCAA 59.965 61.111 0.00 0.00 0.00 4.12
2557 3233 0.249573 GTCCCAGAAAACGTGGTCGA 60.250 55.000 0.00 0.00 40.62 4.20
2567 3243 1.982958 GGGTGGTAGAAGTCCCAGAAA 59.017 52.381 0.00 0.00 39.68 2.52
2826 3537 9.476928 AGATGATGATTTTGGAGAGAGAAAAAT 57.523 29.630 0.00 0.00 36.47 1.82
2832 3543 4.211584 CGCAGATGATGATTTTGGAGAGAG 59.788 45.833 0.00 0.00 0.00 3.20
2834 3545 3.875727 ACGCAGATGATGATTTTGGAGAG 59.124 43.478 0.00 0.00 0.00 3.20
2873 3584 3.610040 TCCTTGTTACACGCAGATGAT 57.390 42.857 0.00 0.00 0.00 2.45
2882 3593 7.075741 GTCAACATGTACAATCCTTGTTACAC 58.924 38.462 10.59 7.69 42.22 2.90
3000 3735 1.308998 AGACGTTGACCAAAGGCTTG 58.691 50.000 0.00 0.00 34.46 4.01
3058 3793 4.904253 AAAAGCGTTTTTGGCACTAGTA 57.096 36.364 9.31 0.00 35.26 1.82
3060 3795 8.460831 AATATAAAAAGCGTTTTTGGCACTAG 57.539 30.769 15.45 0.00 42.41 2.57
3061 3796 8.819643 AAATATAAAAAGCGTTTTTGGCACTA 57.180 26.923 15.45 0.00 42.41 2.74
3062 3797 7.722795 AAATATAAAAAGCGTTTTTGGCACT 57.277 28.000 15.45 0.00 42.41 4.40
3063 3798 7.322461 CCAAAATATAAAAAGCGTTTTTGGCAC 59.678 33.333 15.45 0.00 43.31 5.01
3064 3799 7.226720 TCCAAAATATAAAAAGCGTTTTTGGCA 59.773 29.630 15.45 0.00 46.40 4.92
3065 3800 7.532546 GTCCAAAATATAAAAAGCGTTTTTGGC 59.467 33.333 15.45 8.50 46.40 4.52
3067 3802 9.922305 TTGTCCAAAATATAAAAAGCGTTTTTG 57.078 25.926 15.45 6.80 42.41 2.44
3069 3804 9.535878 TCTTGTCCAAAATATAAAAAGCGTTTT 57.464 25.926 14.68 14.68 40.15 2.43
3070 3805 9.191995 CTCTTGTCCAAAATATAAAAAGCGTTT 57.808 29.630 0.00 0.00 0.00 3.60
3071 3806 7.812669 CCTCTTGTCCAAAATATAAAAAGCGTT 59.187 33.333 0.00 0.00 0.00 4.84
3072 3807 7.312899 CCTCTTGTCCAAAATATAAAAAGCGT 58.687 34.615 0.00 0.00 0.00 5.07
3073 3808 6.751888 CCCTCTTGTCCAAAATATAAAAAGCG 59.248 38.462 0.00 0.00 0.00 4.68
3074 3809 7.836842 TCCCTCTTGTCCAAAATATAAAAAGC 58.163 34.615 0.00 0.00 0.00 3.51
3075 3810 9.025041 ACTCCCTCTTGTCCAAAATATAAAAAG 57.975 33.333 0.00 0.00 0.00 2.27
3076 3811 8.950007 ACTCCCTCTTGTCCAAAATATAAAAA 57.050 30.769 0.00 0.00 0.00 1.94
3077 3812 9.457436 GTACTCCCTCTTGTCCAAAATATAAAA 57.543 33.333 0.00 0.00 0.00 1.52
3078 3813 8.607713 TGTACTCCCTCTTGTCCAAAATATAAA 58.392 33.333 0.00 0.00 0.00 1.40
3079 3814 8.153221 TGTACTCCCTCTTGTCCAAAATATAA 57.847 34.615 0.00 0.00 0.00 0.98
3080 3815 7.743116 TGTACTCCCTCTTGTCCAAAATATA 57.257 36.000 0.00 0.00 0.00 0.86
3081 3816 6.636454 TGTACTCCCTCTTGTCCAAAATAT 57.364 37.500 0.00 0.00 0.00 1.28
3082 3817 6.442541 TTGTACTCCCTCTTGTCCAAAATA 57.557 37.500 0.00 0.00 0.00 1.40
3083 3818 4.993705 TGTACTCCCTCTTGTCCAAAAT 57.006 40.909 0.00 0.00 0.00 1.82
3084 3819 4.781775 TTGTACTCCCTCTTGTCCAAAA 57.218 40.909 0.00 0.00 0.00 2.44
3085 3820 4.457466 GTTTGTACTCCCTCTTGTCCAAA 58.543 43.478 0.00 0.00 0.00 3.28
3086 3821 3.181448 GGTTTGTACTCCCTCTTGTCCAA 60.181 47.826 0.00 0.00 0.00 3.53
3087 3822 2.370849 GGTTTGTACTCCCTCTTGTCCA 59.629 50.000 0.00 0.00 0.00 4.02
3088 3823 2.370849 TGGTTTGTACTCCCTCTTGTCC 59.629 50.000 0.00 0.00 0.00 4.02
3089 3824 3.764237 TGGTTTGTACTCCCTCTTGTC 57.236 47.619 0.00 0.00 0.00 3.18
3090 3825 4.513406 TTTGGTTTGTACTCCCTCTTGT 57.487 40.909 0.00 0.00 0.00 3.16
3091 3826 5.845391 TTTTTGGTTTGTACTCCCTCTTG 57.155 39.130 0.00 0.00 0.00 3.02
3115 3850 4.780815 TGCATAGTAAAATCCCAGTGAGG 58.219 43.478 0.00 0.00 37.03 3.86
3116 3851 5.295292 CACTGCATAGTAAAATCCCAGTGAG 59.705 44.000 11.26 0.00 46.95 3.51
3149 3884 5.067674 TCTGTTTGAAAATCCCAGTCAACTG 59.932 40.000 3.08 3.08 43.40 3.16
3217 3952 6.503589 TGGAACGTGGAACCATTTTTATAG 57.496 37.500 0.00 0.00 0.00 1.31
3262 3997 3.420893 TGGAGCTCCAACTTACAAATGG 58.579 45.455 33.41 0.00 44.35 3.16
3311 4047 2.054021 TGTCCCCAGAGTGTTTGATCA 58.946 47.619 0.00 0.00 0.00 2.92
3320 4056 1.134098 CAGTTTGTGTGTCCCCAGAGT 60.134 52.381 0.00 0.00 0.00 3.24
3322 4058 0.182537 CCAGTTTGTGTGTCCCCAGA 59.817 55.000 0.00 0.00 0.00 3.86
3335 4071 0.471022 AAAATGGCCCGACCCAGTTT 60.471 50.000 12.01 12.01 45.29 2.66
3336 4072 1.155155 AAAATGGCCCGACCCAGTT 59.845 52.632 0.00 1.92 44.28 3.16
3424 4160 6.524101 ACCAAAAGCAAACTAGAAACTGAA 57.476 33.333 0.00 0.00 0.00 3.02
3487 4223 9.787532 CACTTTTTGAAACTCATGAAAAGAGTA 57.212 29.630 16.76 0.00 45.11 2.59
3490 4226 9.487790 AAACACTTTTTGAAACTCATGAAAAGA 57.512 25.926 16.76 1.62 36.80 2.52
3508 4245 9.900710 GTTTTTCCCAAATTTTGTAAACACTTT 57.099 25.926 8.26 0.00 0.00 2.66
3571 4308 7.649705 TGAACATTTAGTAAAATTTGCGAGCAA 59.350 29.630 6.39 6.39 32.87 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.