Multiple sequence alignment - TraesCS5B01G469400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G469400 | chr5B | 100.000 | 3685 | 0 | 0 | 1 | 3685 | 642991295 | 642994979 | 0.000000e+00 | 6806.0 |
1 | TraesCS5B01G469400 | chr5B | 91.006 | 934 | 73 | 7 | 1801 | 2728 | 643651655 | 643650727 | 0.000000e+00 | 1249.0 |
2 | TraesCS5B01G469400 | chr5B | 85.082 | 610 | 66 | 16 | 666 | 1265 | 643652843 | 643652249 | 1.890000e-167 | 599.0 |
3 | TraesCS5B01G469400 | chr5B | 87.654 | 162 | 17 | 3 | 6 | 166 | 241608577 | 241608418 | 6.280000e-43 | 185.0 |
4 | TraesCS5B01G469400 | chr5D | 92.466 | 2084 | 105 | 20 | 663 | 2736 | 511956123 | 511958164 | 0.000000e+00 | 2931.0 |
5 | TraesCS5B01G469400 | chr5D | 91.796 | 963 | 71 | 7 | 1771 | 2728 | 512763714 | 512762755 | 0.000000e+00 | 1334.0 |
6 | TraesCS5B01G469400 | chr5D | 85.484 | 620 | 54 | 17 | 668 | 1265 | 512765125 | 512764520 | 6.760000e-172 | 614.0 |
7 | TraesCS5B01G469400 | chr5D | 82.709 | 347 | 30 | 15 | 3214 | 3557 | 511971021 | 511971340 | 7.790000e-72 | 281.0 |
8 | TraesCS5B01G469400 | chr5D | 85.385 | 260 | 35 | 2 | 1000 | 1256 | 511972150 | 511972409 | 2.180000e-67 | 267.0 |
9 | TraesCS5B01G469400 | chr5D | 86.264 | 182 | 21 | 4 | 6 | 184 | 232158061 | 232157881 | 1.040000e-45 | 195.0 |
10 | TraesCS5B01G469400 | chr5D | 91.736 | 121 | 9 | 1 | 2930 | 3050 | 511958147 | 511958266 | 2.280000e-37 | 167.0 |
11 | TraesCS5B01G469400 | chr5D | 83.333 | 102 | 12 | 4 | 170 | 270 | 69901762 | 69901859 | 5.070000e-14 | 89.8 |
12 | TraesCS5B01G469400 | chr5A | 91.429 | 1295 | 61 | 18 | 1812 | 3058 | 640371094 | 640372386 | 0.000000e+00 | 1731.0 |
13 | TraesCS5B01G469400 | chr5A | 92.212 | 886 | 63 | 5 | 1847 | 2728 | 640925778 | 640924895 | 0.000000e+00 | 1249.0 |
14 | TraesCS5B01G469400 | chr5A | 88.050 | 887 | 53 | 32 | 655 | 1513 | 640370236 | 640371097 | 0.000000e+00 | 1002.0 |
15 | TraesCS5B01G469400 | chr5A | 86.634 | 606 | 52 | 14 | 666 | 1255 | 640926988 | 640926396 | 0.000000e+00 | 643.0 |
16 | TraesCS5B01G469400 | chr5A | 92.088 | 455 | 28 | 2 | 2280 | 2726 | 640307768 | 640308222 | 5.190000e-178 | 634.0 |
17 | TraesCS5B01G469400 | chr5A | 85.080 | 563 | 76 | 8 | 3120 | 3680 | 640429670 | 640430226 | 5.340000e-158 | 568.0 |
18 | TraesCS5B01G469400 | chr5A | 85.213 | 399 | 57 | 2 | 2304 | 2701 | 640354020 | 640354417 | 3.430000e-110 | 409.0 |
19 | TraesCS5B01G469400 | chr5A | 87.464 | 343 | 34 | 7 | 277 | 616 | 640369677 | 640370013 | 1.610000e-103 | 387.0 |
20 | TraesCS5B01G469400 | chr5A | 89.123 | 285 | 25 | 5 | 3102 | 3385 | 640308391 | 640308670 | 2.110000e-92 | 350.0 |
21 | TraesCS5B01G469400 | chr5A | 93.548 | 186 | 11 | 1 | 2873 | 3058 | 640308208 | 640308392 | 3.620000e-70 | 276.0 |
22 | TraesCS5B01G469400 | chr5A | 83.462 | 260 | 40 | 1 | 1000 | 1256 | 640318616 | 640318875 | 4.760000e-59 | 239.0 |
23 | TraesCS5B01G469400 | chr5A | 88.108 | 185 | 22 | 0 | 1072 | 1256 | 640390592 | 640390776 | 1.720000e-53 | 220.0 |
24 | TraesCS5B01G469400 | chr5A | 84.298 | 121 | 12 | 3 | 2938 | 3058 | 640429543 | 640429656 | 1.080000e-20 | 111.0 |
25 | TraesCS5B01G469400 | chr3D | 86.630 | 718 | 82 | 8 | 1980 | 2686 | 601626126 | 601626840 | 0.000000e+00 | 782.0 |
26 | TraesCS5B01G469400 | chr3D | 85.027 | 187 | 20 | 6 | 3 | 184 | 489640355 | 489640538 | 2.260000e-42 | 183.0 |
27 | TraesCS5B01G469400 | chr3D | 84.409 | 186 | 23 | 6 | 3 | 184 | 177869078 | 177869261 | 1.050000e-40 | 178.0 |
28 | TraesCS5B01G469400 | chr3D | 79.535 | 215 | 36 | 4 | 170 | 377 | 318576356 | 318576143 | 2.970000e-31 | 147.0 |
29 | TraesCS5B01G469400 | chr4A | 87.349 | 166 | 17 | 4 | 3 | 166 | 137788345 | 137788508 | 1.750000e-43 | 187.0 |
30 | TraesCS5B01G469400 | chr4A | 85.027 | 187 | 21 | 7 | 3 | 184 | 582521223 | 582521407 | 2.260000e-42 | 183.0 |
31 | TraesCS5B01G469400 | chr7D | 84.865 | 185 | 24 | 4 | 3 | 184 | 617456365 | 617456548 | 2.260000e-42 | 183.0 |
32 | TraesCS5B01G469400 | chr3A | 85.246 | 183 | 21 | 6 | 6 | 184 | 374969579 | 374969399 | 2.260000e-42 | 183.0 |
33 | TraesCS5B01G469400 | chr2A | 85.246 | 183 | 21 | 6 | 6 | 184 | 305670654 | 305670474 | 2.260000e-42 | 183.0 |
34 | TraesCS5B01G469400 | chr2D | 79.397 | 199 | 31 | 4 | 171 | 360 | 47323697 | 47323894 | 8.300000e-27 | 132.0 |
35 | TraesCS5B01G469400 | chr2D | 77.228 | 202 | 39 | 3 | 173 | 368 | 642892070 | 642891870 | 1.080000e-20 | 111.0 |
36 | TraesCS5B01G469400 | chr6B | 77.670 | 206 | 38 | 4 | 173 | 372 | 564550092 | 564549889 | 6.460000e-23 | 119.0 |
37 | TraesCS5B01G469400 | chr6B | 75.943 | 212 | 42 | 6 | 169 | 372 | 159409817 | 159409607 | 2.340000e-17 | 100.0 |
38 | TraesCS5B01G469400 | chr1D | 83.761 | 117 | 17 | 2 | 178 | 293 | 347495512 | 347495397 | 3.890000e-20 | 110.0 |
39 | TraesCS5B01G469400 | chr6D | 76.415 | 212 | 43 | 2 | 170 | 374 | 83553586 | 83553375 | 1.400000e-19 | 108.0 |
40 | TraesCS5B01G469400 | chr6A | 79.545 | 132 | 27 | 0 | 170 | 301 | 100814302 | 100814171 | 1.090000e-15 | 95.3 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G469400 | chr5B | 642991295 | 642994979 | 3684 | False | 6806.0 | 6806 | 100.000000 | 1 | 3685 | 1 | chr5B.!!$F1 | 3684 |
1 | TraesCS5B01G469400 | chr5B | 643650727 | 643652843 | 2116 | True | 924.0 | 1249 | 88.044000 | 666 | 2728 | 2 | chr5B.!!$R2 | 2062 |
2 | TraesCS5B01G469400 | chr5D | 511956123 | 511958266 | 2143 | False | 1549.0 | 2931 | 92.101000 | 663 | 3050 | 2 | chr5D.!!$F2 | 2387 |
3 | TraesCS5B01G469400 | chr5D | 512762755 | 512765125 | 2370 | True | 974.0 | 1334 | 88.640000 | 668 | 2728 | 2 | chr5D.!!$R2 | 2060 |
4 | TraesCS5B01G469400 | chr5D | 511971021 | 511972409 | 1388 | False | 274.0 | 281 | 84.047000 | 1000 | 3557 | 2 | chr5D.!!$F3 | 2557 |
5 | TraesCS5B01G469400 | chr5A | 640369677 | 640372386 | 2709 | False | 1040.0 | 1731 | 88.981000 | 277 | 3058 | 3 | chr5A.!!$F5 | 2781 |
6 | TraesCS5B01G469400 | chr5A | 640924895 | 640926988 | 2093 | True | 946.0 | 1249 | 89.423000 | 666 | 2728 | 2 | chr5A.!!$R1 | 2062 |
7 | TraesCS5B01G469400 | chr5A | 640307768 | 640308670 | 902 | False | 420.0 | 634 | 91.586333 | 2280 | 3385 | 3 | chr5A.!!$F4 | 1105 |
8 | TraesCS5B01G469400 | chr5A | 640429543 | 640430226 | 683 | False | 339.5 | 568 | 84.689000 | 2938 | 3680 | 2 | chr5A.!!$F6 | 742 |
9 | TraesCS5B01G469400 | chr3D | 601626126 | 601626840 | 714 | False | 782.0 | 782 | 86.630000 | 1980 | 2686 | 1 | chr3D.!!$F3 | 706 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
100 | 101 | 0.377554 | CCACCGACGTAGCTGACTAG | 59.622 | 60.0 | 0.0 | 0.0 | 0.00 | 2.57 | F |
124 | 125 | 0.471617 | CCTGTTATCCCAGGCCTCTG | 59.528 | 60.0 | 0.0 | 0.0 | 45.19 | 3.35 | F |
1636 | 2272 | 0.609131 | CCATGTCTTTCGCCCCAAGT | 60.609 | 55.0 | 0.0 | 0.0 | 0.00 | 3.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1527 | 1858 | 0.882927 | GCACGTAGGTTGCCAAGTCA | 60.883 | 55.0 | 0.0 | 0.0 | 0.0 | 3.41 | R |
1958 | 2619 | 1.098712 | TGTTTGTGCCGTTGGAGACC | 61.099 | 55.0 | 0.0 | 0.0 | 0.0 | 3.85 | R |
3322 | 4058 | 0.182537 | CCAGTTTGTGTGTCCCCAGA | 59.817 | 55.0 | 0.0 | 0.0 | 0.0 | 3.86 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 3.691342 | CGTCCTGGGCCACTTCGA | 61.691 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
18 | 19 | 2.266055 | GTCCTGGGCCACTTCGAG | 59.734 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
19 | 20 | 3.706373 | TCCTGGGCCACTTCGAGC | 61.706 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
21 | 22 | 2.435586 | CTGGGCCACTTCGAGCAG | 60.436 | 66.667 | 0.00 | 0.00 | 0.00 | 4.24 |
22 | 23 | 4.704833 | TGGGCCACTTCGAGCAGC | 62.705 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
25 | 26 | 4.704833 | GCCACTTCGAGCAGCCCA | 62.705 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
26 | 27 | 2.270205 | CCACTTCGAGCAGCCCAT | 59.730 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
27 | 28 | 2.110967 | CCACTTCGAGCAGCCCATG | 61.111 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
28 | 29 | 2.110967 | CACTTCGAGCAGCCCATGG | 61.111 | 63.158 | 4.14 | 4.14 | 0.00 | 3.66 |
29 | 30 | 2.270205 | CTTCGAGCAGCCCATGGT | 59.730 | 61.111 | 11.73 | 0.00 | 44.02 | 3.55 |
30 | 31 | 2.046023 | TTCGAGCAGCCCATGGTG | 60.046 | 61.111 | 11.73 | 4.31 | 40.53 | 4.17 |
36 | 37 | 4.662023 | CAGCCCATGGTGCATACA | 57.338 | 55.556 | 22.33 | 0.00 | 32.48 | 2.29 |
37 | 38 | 2.884976 | CAGCCCATGGTGCATACAA | 58.115 | 52.632 | 22.33 | 0.00 | 32.48 | 2.41 |
38 | 39 | 0.742505 | CAGCCCATGGTGCATACAAG | 59.257 | 55.000 | 22.33 | 1.80 | 32.48 | 3.16 |
39 | 40 | 0.625316 | AGCCCATGGTGCATACAAGA | 59.375 | 50.000 | 22.33 | 0.00 | 0.00 | 3.02 |
40 | 41 | 1.005805 | AGCCCATGGTGCATACAAGAA | 59.994 | 47.619 | 22.33 | 0.00 | 0.00 | 2.52 |
44 | 45 | 3.956199 | CCCATGGTGCATACAAGAAAGAT | 59.044 | 43.478 | 11.73 | 0.00 | 0.00 | 2.40 |
45 | 46 | 4.403432 | CCCATGGTGCATACAAGAAAGATT | 59.597 | 41.667 | 11.73 | 0.00 | 0.00 | 2.40 |
46 | 47 | 5.450965 | CCCATGGTGCATACAAGAAAGATTC | 60.451 | 44.000 | 11.73 | 0.00 | 0.00 | 2.52 |
47 | 48 | 5.450965 | CCATGGTGCATACAAGAAAGATTCC | 60.451 | 44.000 | 2.57 | 0.00 | 0.00 | 3.01 |
48 | 49 | 4.661222 | TGGTGCATACAAGAAAGATTCCA | 58.339 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
49 | 50 | 4.458989 | TGGTGCATACAAGAAAGATTCCAC | 59.541 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
50 | 51 | 4.458989 | GGTGCATACAAGAAAGATTCCACA | 59.541 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
52 | 53 | 6.088824 | GTGCATACAAGAAAGATTCCACAAG | 58.911 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
53 | 54 | 6.003326 | TGCATACAAGAAAGATTCCACAAGA | 58.997 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
54 | 55 | 6.072508 | TGCATACAAGAAAGATTCCACAAGAC | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
55 | 56 | 6.150140 | GCATACAAGAAAGATTCCACAAGACT | 59.850 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
58 | 59 | 7.736447 | ACAAGAAAGATTCCACAAGACTTAG | 57.264 | 36.000 | 0.00 | 0.00 | 0.00 | 2.18 |
59 | 60 | 6.205658 | ACAAGAAAGATTCCACAAGACTTAGC | 59.794 | 38.462 | 0.00 | 0.00 | 0.00 | 3.09 |
60 | 61 | 5.869579 | AGAAAGATTCCACAAGACTTAGCA | 58.130 | 37.500 | 0.00 | 0.00 | 0.00 | 3.49 |
62 | 63 | 7.624549 | AGAAAGATTCCACAAGACTTAGCATA | 58.375 | 34.615 | 0.00 | 0.00 | 0.00 | 3.14 |
63 | 64 | 7.550906 | AGAAAGATTCCACAAGACTTAGCATAC | 59.449 | 37.037 | 0.00 | 0.00 | 0.00 | 2.39 |
64 | 65 | 6.299805 | AGATTCCACAAGACTTAGCATACA | 57.700 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
67 | 68 | 5.738619 | TCCACAAGACTTAGCATACAAGA | 57.261 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
68 | 69 | 5.479306 | TCCACAAGACTTAGCATACAAGAC | 58.521 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
69 | 70 | 5.011635 | TCCACAAGACTTAGCATACAAGACA | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
70 | 71 | 5.700832 | CCACAAGACTTAGCATACAAGACAA | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
71 | 72 | 6.128445 | CCACAAGACTTAGCATACAAGACAAG | 60.128 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
72 | 73 | 6.646653 | CACAAGACTTAGCATACAAGACAAGA | 59.353 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
74 | 75 | 7.171678 | ACAAGACTTAGCATACAAGACAAGAAC | 59.828 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
75 | 76 | 6.998802 | AGACTTAGCATACAAGACAAGAACT | 58.001 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
76 | 77 | 7.093992 | AGACTTAGCATACAAGACAAGAACTC | 58.906 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
77 | 78 | 6.166982 | ACTTAGCATACAAGACAAGAACTCC | 58.833 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
78 | 79 | 4.899352 | AGCATACAAGACAAGAACTCCT | 57.101 | 40.909 | 0.00 | 0.00 | 0.00 | 3.69 |
82 | 83 | 5.415221 | CATACAAGACAAGAACTCCTCTCC | 58.585 | 45.833 | 0.00 | 0.00 | 31.02 | 3.71 |
83 | 84 | 3.309296 | ACAAGACAAGAACTCCTCTCCA | 58.691 | 45.455 | 0.00 | 0.00 | 31.02 | 3.86 |
84 | 85 | 3.070302 | ACAAGACAAGAACTCCTCTCCAC | 59.930 | 47.826 | 0.00 | 0.00 | 31.02 | 4.02 |
85 | 86 | 2.252714 | AGACAAGAACTCCTCTCCACC | 58.747 | 52.381 | 0.00 | 0.00 | 31.02 | 4.61 |
86 | 87 | 0.969894 | ACAAGAACTCCTCTCCACCG | 59.030 | 55.000 | 0.00 | 0.00 | 31.02 | 4.94 |
87 | 88 | 1.257743 | CAAGAACTCCTCTCCACCGA | 58.742 | 55.000 | 0.00 | 0.00 | 31.02 | 4.69 |
88 | 89 | 1.067495 | CAAGAACTCCTCTCCACCGAC | 60.067 | 57.143 | 0.00 | 0.00 | 31.02 | 4.79 |
89 | 90 | 0.961358 | AGAACTCCTCTCCACCGACG | 60.961 | 60.000 | 0.00 | 0.00 | 0.00 | 5.12 |
90 | 91 | 1.228490 | AACTCCTCTCCACCGACGT | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.34 |
92 | 93 | 0.392729 | ACTCCTCTCCACCGACGTAG | 60.393 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
93 | 94 | 1.716826 | CTCCTCTCCACCGACGTAGC | 61.717 | 65.000 | 0.00 | 0.00 | 0.00 | 3.58 |
96 | 97 | 1.002990 | TCTCCACCGACGTAGCTGA | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
98 | 99 | 1.303074 | TCCACCGACGTAGCTGACT | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
100 | 101 | 0.377554 | CCACCGACGTAGCTGACTAG | 59.622 | 60.000 | 0.00 | 0.00 | 0.00 | 2.57 |
101 | 102 | 1.085091 | CACCGACGTAGCTGACTAGT | 58.915 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
103 | 104 | 2.030213 | CACCGACGTAGCTGACTAGTAC | 59.970 | 54.545 | 0.00 | 0.00 | 0.00 | 2.73 |
104 | 105 | 2.093764 | ACCGACGTAGCTGACTAGTACT | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
105 | 106 | 2.539274 | CCGACGTAGCTGACTAGTACTC | 59.461 | 54.545 | 0.00 | 0.00 | 0.00 | 2.59 |
106 | 107 | 2.539274 | CGACGTAGCTGACTAGTACTCC | 59.461 | 54.545 | 0.00 | 0.00 | 0.00 | 3.85 |
107 | 108 | 3.737663 | CGACGTAGCTGACTAGTACTCCT | 60.738 | 52.174 | 0.00 | 0.00 | 0.00 | 3.69 |
108 | 109 | 3.533547 | ACGTAGCTGACTAGTACTCCTG | 58.466 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
109 | 110 | 3.055240 | ACGTAGCTGACTAGTACTCCTGT | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
111 | 112 | 5.114780 | CGTAGCTGACTAGTACTCCTGTTA | 58.885 | 45.833 | 0.00 | 0.00 | 0.00 | 2.41 |
112 | 113 | 5.759273 | CGTAGCTGACTAGTACTCCTGTTAT | 59.241 | 44.000 | 0.00 | 0.00 | 0.00 | 1.89 |
113 | 114 | 6.073657 | CGTAGCTGACTAGTACTCCTGTTATC | 60.074 | 46.154 | 0.00 | 0.00 | 0.00 | 1.75 |
114 | 115 | 5.134661 | AGCTGACTAGTACTCCTGTTATCC | 58.865 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
115 | 116 | 4.278919 | GCTGACTAGTACTCCTGTTATCCC | 59.721 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
116 | 117 | 5.446860 | CTGACTAGTACTCCTGTTATCCCA | 58.553 | 45.833 | 0.00 | 0.00 | 0.00 | 4.37 |
117 | 118 | 5.446860 | TGACTAGTACTCCTGTTATCCCAG | 58.553 | 45.833 | 0.00 | 0.00 | 0.00 | 4.45 |
123 | 124 | 2.936823 | CCTGTTATCCCAGGCCTCT | 58.063 | 57.895 | 0.00 | 0.00 | 45.19 | 3.69 |
124 | 125 | 0.471617 | CCTGTTATCCCAGGCCTCTG | 59.528 | 60.000 | 0.00 | 0.00 | 45.19 | 3.35 |
139 | 140 | 6.109359 | CAGGCCTCTGGTACATTATATAAGC | 58.891 | 44.000 | 0.00 | 0.00 | 38.20 | 3.09 |
140 | 141 | 5.189934 | AGGCCTCTGGTACATTATATAAGCC | 59.810 | 44.000 | 0.00 | 4.47 | 38.20 | 4.35 |
143 | 144 | 6.565234 | CCTCTGGTACATTATATAAGCCGAG | 58.435 | 44.000 | 1.02 | 10.20 | 38.20 | 4.63 |
144 | 145 | 6.377429 | CCTCTGGTACATTATATAAGCCGAGA | 59.623 | 42.308 | 18.01 | 13.31 | 38.20 | 4.04 |
147 | 148 | 5.776208 | TGGTACATTATATAAGCCGAGACCA | 59.224 | 40.000 | 1.02 | 6.00 | 0.00 | 4.02 |
149 | 150 | 5.407407 | ACATTATATAAGCCGAGACCAGG | 57.593 | 43.478 | 1.02 | 0.00 | 0.00 | 4.45 |
156 | 157 | 3.111939 | CCGAGACCAGGCTAGTCG | 58.888 | 66.667 | 7.43 | 4.03 | 39.31 | 4.18 |
157 | 158 | 1.451567 | CCGAGACCAGGCTAGTCGA | 60.452 | 63.158 | 7.43 | 0.00 | 39.31 | 4.20 |
159 | 160 | 1.542767 | CCGAGACCAGGCTAGTCGATA | 60.543 | 57.143 | 7.43 | 0.00 | 39.31 | 2.92 |
160 | 161 | 1.801771 | CGAGACCAGGCTAGTCGATAG | 59.198 | 57.143 | 7.43 | 0.00 | 39.31 | 2.08 |
190 | 191 | 6.691388 | TCTTAACTCATTCACATACGATCACG | 59.309 | 38.462 | 0.00 | 0.00 | 45.75 | 4.35 |
191 | 192 | 4.632538 | ACTCATTCACATACGATCACGA | 57.367 | 40.909 | 0.00 | 0.00 | 42.66 | 4.35 |
192 | 193 | 4.602006 | ACTCATTCACATACGATCACGAG | 58.398 | 43.478 | 0.00 | 0.00 | 42.66 | 4.18 |
193 | 194 | 3.964909 | TCATTCACATACGATCACGAGG | 58.035 | 45.455 | 0.00 | 0.00 | 42.66 | 4.63 |
195 | 196 | 4.577283 | TCATTCACATACGATCACGAGGTA | 59.423 | 41.667 | 0.00 | 0.00 | 42.66 | 3.08 |
196 | 197 | 4.547406 | TTCACATACGATCACGAGGTAG | 57.453 | 45.455 | 0.00 | 0.00 | 42.66 | 3.18 |
197 | 198 | 3.800531 | TCACATACGATCACGAGGTAGA | 58.199 | 45.455 | 0.00 | 0.00 | 42.66 | 2.59 |
198 | 199 | 4.386711 | TCACATACGATCACGAGGTAGAT | 58.613 | 43.478 | 0.00 | 0.00 | 42.66 | 1.98 |
199 | 200 | 4.451435 | TCACATACGATCACGAGGTAGATC | 59.549 | 45.833 | 0.00 | 0.00 | 42.66 | 2.75 |
200 | 201 | 4.213482 | CACATACGATCACGAGGTAGATCA | 59.787 | 45.833 | 0.00 | 0.00 | 40.45 | 2.92 |
201 | 202 | 4.820173 | ACATACGATCACGAGGTAGATCAA | 59.180 | 41.667 | 0.00 | 0.00 | 40.45 | 2.57 |
202 | 203 | 3.694535 | ACGATCACGAGGTAGATCAAC | 57.305 | 47.619 | 0.00 | 0.00 | 40.45 | 3.18 |
203 | 204 | 3.280295 | ACGATCACGAGGTAGATCAACT | 58.720 | 45.455 | 0.00 | 0.00 | 40.45 | 3.16 |
206 | 207 | 4.438880 | CGATCACGAGGTAGATCAACTTGT | 60.439 | 45.833 | 0.00 | 0.00 | 40.45 | 3.16 |
207 | 208 | 5.220796 | CGATCACGAGGTAGATCAACTTGTA | 60.221 | 44.000 | 0.00 | 0.00 | 40.45 | 2.41 |
208 | 209 | 5.306532 | TCACGAGGTAGATCAACTTGTAC | 57.693 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
210 | 211 | 5.123502 | TCACGAGGTAGATCAACTTGTACTC | 59.876 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
211 | 212 | 5.124138 | CACGAGGTAGATCAACTTGTACTCT | 59.876 | 44.000 | 0.00 | 0.00 | 0.00 | 3.24 |
212 | 213 | 5.124138 | ACGAGGTAGATCAACTTGTACTCTG | 59.876 | 44.000 | 0.00 | 0.00 | 0.00 | 3.35 |
214 | 215 | 6.315642 | CGAGGTAGATCAACTTGTACTCTGTA | 59.684 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
216 | 217 | 6.377712 | AGGTAGATCAACTTGTACTCTGTACC | 59.622 | 42.308 | 0.00 | 0.00 | 0.00 | 3.34 |
217 | 218 | 5.662674 | AGATCAACTTGTACTCTGTACCC | 57.337 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
218 | 219 | 4.466726 | AGATCAACTTGTACTCTGTACCCC | 59.533 | 45.833 | 0.00 | 0.00 | 0.00 | 4.95 |
219 | 220 | 3.578978 | TCAACTTGTACTCTGTACCCCA | 58.421 | 45.455 | 5.55 | 0.00 | 0.00 | 4.96 |
221 | 222 | 4.222145 | TCAACTTGTACTCTGTACCCCATC | 59.778 | 45.833 | 5.55 | 0.00 | 0.00 | 3.51 |
223 | 224 | 2.932184 | TGTACTCTGTACCCCATCCA | 57.068 | 50.000 | 5.55 | 0.00 | 0.00 | 3.41 |
224 | 225 | 2.463752 | TGTACTCTGTACCCCATCCAC | 58.536 | 52.381 | 5.55 | 0.00 | 0.00 | 4.02 |
226 | 227 | 2.038863 | ACTCTGTACCCCATCCACAA | 57.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
228 | 229 | 2.505819 | ACTCTGTACCCCATCCACAATC | 59.494 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
229 | 230 | 2.505407 | CTCTGTACCCCATCCACAATCA | 59.495 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
230 | 231 | 2.916269 | TCTGTACCCCATCCACAATCAA | 59.084 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
232 | 233 | 4.724293 | TCTGTACCCCATCCACAATCAATA | 59.276 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
234 | 235 | 4.228438 | TGTACCCCATCCACAATCAATACA | 59.772 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
235 | 236 | 4.329638 | ACCCCATCCACAATCAATACAA | 57.670 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
236 | 237 | 4.682563 | ACCCCATCCACAATCAATACAAA | 58.317 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
238 | 239 | 6.439487 | ACCCCATCCACAATCAATACAAATA | 58.561 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
239 | 240 | 6.900186 | ACCCCATCCACAATCAATACAAATAA | 59.100 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
240 | 241 | 7.401493 | ACCCCATCCACAATCAATACAAATAAA | 59.599 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
241 | 242 | 7.927629 | CCCCATCCACAATCAATACAAATAAAG | 59.072 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
242 | 243 | 7.439056 | CCCATCCACAATCAATACAAATAAAGC | 59.561 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
243 | 244 | 7.980662 | CCATCCACAATCAATACAAATAAAGCA | 59.019 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
245 | 246 | 8.929827 | TCCACAATCAATACAAATAAAGCATG | 57.070 | 30.769 | 0.00 | 0.00 | 0.00 | 4.06 |
263 | 264 | 6.422776 | AGCATGATGTAAAGTTTTACCTCG | 57.577 | 37.500 | 11.16 | 2.94 | 41.72 | 4.63 |
264 | 265 | 5.938125 | AGCATGATGTAAAGTTTTACCTCGT | 59.062 | 36.000 | 11.16 | 9.55 | 41.72 | 4.18 |
265 | 266 | 6.430000 | AGCATGATGTAAAGTTTTACCTCGTT | 59.570 | 34.615 | 11.16 | 2.51 | 41.72 | 3.85 |
266 | 267 | 6.523201 | GCATGATGTAAAGTTTTACCTCGTTG | 59.477 | 38.462 | 11.16 | 12.15 | 41.72 | 4.10 |
269 | 270 | 7.211573 | TGATGTAAAGTTTTACCTCGTTGAGA | 58.788 | 34.615 | 11.16 | 0.00 | 41.72 | 3.27 |
270 | 271 | 7.711772 | TGATGTAAAGTTTTACCTCGTTGAGAA | 59.288 | 33.333 | 11.16 | 0.00 | 41.72 | 2.87 |
271 | 272 | 7.846644 | TGTAAAGTTTTACCTCGTTGAGAAA | 57.153 | 32.000 | 11.16 | 0.00 | 41.72 | 2.52 |
272 | 273 | 7.912383 | TGTAAAGTTTTACCTCGTTGAGAAAG | 58.088 | 34.615 | 11.16 | 0.00 | 41.72 | 2.62 |
273 | 274 | 5.419760 | AAGTTTTACCTCGTTGAGAAAGC | 57.580 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
274 | 275 | 3.813724 | AGTTTTACCTCGTTGAGAAAGCC | 59.186 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
275 | 276 | 2.467566 | TTACCTCGTTGAGAAAGCCC | 57.532 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
281 | 282 | 0.882927 | CGTTGAGAAAGCCCGAACCA | 60.883 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
283 | 284 | 1.266989 | GTTGAGAAAGCCCGAACCAAG | 59.733 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
295 | 296 | 4.498009 | GCCCGAACCAAGATAAACATCATG | 60.498 | 45.833 | 0.00 | 0.00 | 0.00 | 3.07 |
296 | 297 | 4.640201 | CCCGAACCAAGATAAACATCATGT | 59.360 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
297 | 298 | 5.220854 | CCCGAACCAAGATAAACATCATGTC | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
298 | 299 | 5.586243 | CCGAACCAAGATAAACATCATGTCT | 59.414 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
299 | 300 | 6.238211 | CCGAACCAAGATAAACATCATGTCTC | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 3.36 |
327 | 329 | 0.753111 | CCATCTTGCCAAGGCTACCC | 60.753 | 60.000 | 12.96 | 0.00 | 42.51 | 3.69 |
329 | 331 | 1.562672 | ATCTTGCCAAGGCTACCCGT | 61.563 | 55.000 | 12.96 | 0.00 | 42.51 | 5.28 |
346 | 348 | 1.413077 | CCGTTTGGGACCCTCTATCTC | 59.587 | 57.143 | 13.00 | 0.00 | 38.47 | 2.75 |
347 | 349 | 2.108168 | CGTTTGGGACCCTCTATCTCA | 58.892 | 52.381 | 13.00 | 0.00 | 0.00 | 3.27 |
362 | 364 | 5.325239 | TCTATCTCAGATCTGCCGGATTTA | 58.675 | 41.667 | 18.36 | 9.41 | 34.33 | 1.40 |
365 | 367 | 3.706594 | TCTCAGATCTGCCGGATTTAACT | 59.293 | 43.478 | 18.36 | 0.00 | 34.33 | 2.24 |
387 | 389 | 4.448210 | TCCGTCACCCTATAAAAATGAGC | 58.552 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
405 | 407 | 3.365265 | GAAGGCGGTGGCACTTGG | 61.365 | 66.667 | 18.45 | 8.45 | 42.47 | 3.61 |
441 | 444 | 4.068599 | TCGATGATAGCAACAAAACCACA | 58.931 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
442 | 445 | 4.083537 | TCGATGATAGCAACAAAACCACAC | 60.084 | 41.667 | 0.00 | 0.00 | 0.00 | 3.82 |
490 | 493 | 5.690409 | TGTGAACATTTACGTTGAGAGAGAC | 59.310 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
492 | 495 | 3.243336 | ACATTTACGTTGAGAGAGACGC | 58.757 | 45.455 | 0.00 | 0.00 | 42.67 | 5.19 |
512 | 515 | 1.737355 | GCCGCATGCACCAACCATAT | 61.737 | 55.000 | 19.57 | 0.00 | 40.77 | 1.78 |
514 | 517 | 1.952990 | CCGCATGCACCAACCATATAA | 59.047 | 47.619 | 19.57 | 0.00 | 0.00 | 0.98 |
520 | 523 | 6.867816 | CGCATGCACCAACCATATAAATAAAT | 59.132 | 34.615 | 19.57 | 0.00 | 0.00 | 1.40 |
566 | 569 | 8.442632 | AAATAACATCATACATGTGAGGACTG | 57.557 | 34.615 | 9.11 | 1.28 | 34.26 | 3.51 |
570 | 573 | 2.427095 | TCATACATGTGAGGACTGACGG | 59.573 | 50.000 | 9.11 | 0.00 | 0.00 | 4.79 |
572 | 575 | 1.448540 | CATGTGAGGACTGACGGCC | 60.449 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
605 | 608 | 4.527157 | GCGCACGCCAGATCAAGC | 62.527 | 66.667 | 0.30 | 0.00 | 34.56 | 4.01 |
634 | 659 | 1.199097 | ACGGTCGATTGTCATTTTGGC | 59.801 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
639 | 664 | 3.914364 | GTCGATTGTCATTTTGGCTGTTC | 59.086 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
642 | 667 | 4.325204 | CGATTGTCATTTTGGCTGTTCATG | 59.675 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
643 | 668 | 4.933505 | TTGTCATTTTGGCTGTTCATGA | 57.066 | 36.364 | 0.00 | 0.00 | 0.00 | 3.07 |
644 | 669 | 4.241590 | TGTCATTTTGGCTGTTCATGAC | 57.758 | 40.909 | 0.00 | 4.04 | 42.72 | 3.06 |
645 | 670 | 3.236816 | GTCATTTTGGCTGTTCATGACG | 58.763 | 45.455 | 0.00 | 0.00 | 35.69 | 4.35 |
646 | 671 | 2.228582 | TCATTTTGGCTGTTCATGACGG | 59.771 | 45.455 | 0.00 | 0.00 | 37.71 | 4.79 |
651 | 676 | 3.786101 | CTGTTCATGACGGCCGAG | 58.214 | 61.111 | 35.90 | 18.27 | 0.00 | 4.63 |
652 | 677 | 1.811266 | CTGTTCATGACGGCCGAGG | 60.811 | 63.158 | 35.90 | 13.02 | 0.00 | 4.63 |
710 | 897 | 1.070821 | CACAGAGCACATACACACGG | 58.929 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
756 | 944 | 2.866964 | CGCGCGCTCTTTTTCAGC | 60.867 | 61.111 | 30.48 | 0.00 | 0.00 | 4.26 |
825 | 1021 | 2.972625 | TGTTTTATCTCTCCCGTGCAG | 58.027 | 47.619 | 0.00 | 0.00 | 0.00 | 4.41 |
846 | 1042 | 2.876645 | CGCTCGCTTCCACTCGAC | 60.877 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
849 | 1046 | 3.358076 | CTCGCTTCCACTCGACCCC | 62.358 | 68.421 | 0.00 | 0.00 | 0.00 | 4.95 |
1155 | 1381 | 3.665675 | GACGGTGCTCAAGGCGGAT | 62.666 | 63.158 | 0.00 | 0.00 | 45.43 | 4.18 |
1279 | 1505 | 5.116180 | TCACTCCATCGAATACCAATCAAC | 58.884 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
1282 | 1508 | 3.876914 | TCCATCGAATACCAATCAACAGC | 59.123 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
1283 | 1509 | 3.627123 | CCATCGAATACCAATCAACAGCA | 59.373 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
1297 | 1528 | 3.054878 | CAACAGCATTTTCTTGCCTGTC | 58.945 | 45.455 | 0.00 | 0.00 | 43.83 | 3.51 |
1325 | 1556 | 2.158784 | AGTTTGTACTTTGTACGGCCCA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 5.36 |
1327 | 1558 | 1.881591 | TGTACTTTGTACGGCCCAAC | 58.118 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1399 | 1668 | 7.892771 | AGTGTCAATCAGATATATCCTCTGCTA | 59.107 | 37.037 | 9.18 | 0.00 | 39.98 | 3.49 |
1400 | 1669 | 7.973388 | GTGTCAATCAGATATATCCTCTGCTAC | 59.027 | 40.741 | 9.18 | 1.78 | 39.98 | 3.58 |
1401 | 1670 | 7.671398 | TGTCAATCAGATATATCCTCTGCTACA | 59.329 | 37.037 | 9.18 | 4.14 | 39.98 | 2.74 |
1402 | 1671 | 8.526978 | GTCAATCAGATATATCCTCTGCTACAA | 58.473 | 37.037 | 9.18 | 0.00 | 39.98 | 2.41 |
1459 | 1753 | 3.017442 | GTTCCTATTCTTCAGCCCCAAC | 58.983 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1536 | 1867 | 7.061566 | TGTAGCAACTATATATGACTTGGCA | 57.938 | 36.000 | 0.00 | 0.00 | 0.00 | 4.92 |
1538 | 1869 | 6.867662 | AGCAACTATATATGACTTGGCAAC | 57.132 | 37.500 | 0.00 | 0.00 | 0.00 | 4.17 |
1628 | 2236 | 1.522668 | TGTCTTGGCCATGTCTTTCG | 58.477 | 50.000 | 17.54 | 0.00 | 0.00 | 3.46 |
1636 | 2272 | 0.609131 | CCATGTCTTTCGCCCCAAGT | 60.609 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1642 | 2278 | 1.202830 | TCTTTCGCCCCAAGTTAGCAA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
1643 | 2279 | 1.818674 | CTTTCGCCCCAAGTTAGCAAT | 59.181 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
1665 | 2301 | 2.363306 | TGGTGAGTTCAGCCACATTT | 57.637 | 45.000 | 8.67 | 0.00 | 43.22 | 2.32 |
1682 | 2318 | 5.524646 | CCACATTTGAGTCAAATTTGTTGCT | 59.475 | 36.000 | 29.51 | 13.55 | 40.60 | 3.91 |
1757 | 2414 | 1.524863 | CGACTGGTGTTCTCCGACCT | 61.525 | 60.000 | 0.00 | 0.00 | 32.98 | 3.85 |
1768 | 2425 | 1.137513 | CTCCGACCTTGACGTTGAAC | 58.862 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1835 | 2496 | 8.531146 | TGAGTTTGTGATTGATATACTCACTCA | 58.469 | 33.333 | 0.00 | 0.00 | 40.21 | 3.41 |
1904 | 2565 | 1.541310 | CGTACCTGGCCTTGTCCTCA | 61.541 | 60.000 | 3.32 | 0.00 | 0.00 | 3.86 |
1969 | 2630 | 4.760047 | CGCAGGGGTCTCCAACGG | 62.760 | 72.222 | 0.00 | 0.00 | 38.24 | 4.44 |
2567 | 3243 | 2.107546 | AACCGCTTCGACCACGTT | 59.892 | 55.556 | 0.00 | 0.00 | 40.69 | 3.99 |
2726 | 3415 | 6.977502 | GCACTAGATTCATCATCTGCGTATAT | 59.022 | 38.462 | 0.00 | 0.00 | 42.76 | 0.86 |
2727 | 3416 | 8.131731 | GCACTAGATTCATCATCTGCGTATATA | 58.868 | 37.037 | 0.00 | 0.00 | 42.76 | 0.86 |
2826 | 3537 | 5.130975 | AGTTGTATATCCATCACTTGCCTGA | 59.869 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2832 | 3543 | 4.789012 | TCCATCACTTGCCTGATTTTTC | 57.211 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
2834 | 3545 | 4.460382 | TCCATCACTTGCCTGATTTTTCTC | 59.540 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
2882 | 3593 | 4.463515 | CAAGGATTGTACATCATCTGCG | 57.536 | 45.455 | 0.00 | 0.00 | 42.34 | 5.18 |
3000 | 3735 | 6.106673 | TCTCCAAAGTCCGAGTCATATTTTC | 58.893 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3058 | 3793 | 9.499479 | CTCTAAGTCACTCCATGCATAATTTAT | 57.501 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3063 | 3798 | 9.935241 | AGTCACTCCATGCATAATTTATACTAG | 57.065 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3064 | 3799 | 9.712305 | GTCACTCCATGCATAATTTATACTAGT | 57.288 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3065 | 3800 | 9.710900 | TCACTCCATGCATAATTTATACTAGTG | 57.289 | 33.333 | 5.39 | 0.00 | 0.00 | 2.74 |
3066 | 3801 | 8.446273 | CACTCCATGCATAATTTATACTAGTGC | 58.554 | 37.037 | 5.39 | 0.00 | 0.00 | 4.40 |
3067 | 3802 | 7.607991 | ACTCCATGCATAATTTATACTAGTGCC | 59.392 | 37.037 | 5.39 | 0.00 | 0.00 | 5.01 |
3068 | 3803 | 7.457561 | TCCATGCATAATTTATACTAGTGCCA | 58.542 | 34.615 | 5.39 | 0.00 | 0.00 | 4.92 |
3069 | 3804 | 7.941790 | TCCATGCATAATTTATACTAGTGCCAA | 59.058 | 33.333 | 5.39 | 0.00 | 0.00 | 4.52 |
3070 | 3805 | 8.575589 | CCATGCATAATTTATACTAGTGCCAAA | 58.424 | 33.333 | 5.39 | 3.39 | 0.00 | 3.28 |
3071 | 3806 | 9.964303 | CATGCATAATTTATACTAGTGCCAAAA | 57.036 | 29.630 | 5.39 | 1.25 | 0.00 | 2.44 |
3073 | 3808 | 9.796120 | TGCATAATTTATACTAGTGCCAAAAAC | 57.204 | 29.630 | 5.39 | 0.00 | 0.00 | 2.43 |
3074 | 3809 | 8.953990 | GCATAATTTATACTAGTGCCAAAAACG | 58.046 | 33.333 | 5.39 | 0.00 | 0.00 | 3.60 |
3075 | 3810 | 8.953990 | CATAATTTATACTAGTGCCAAAAACGC | 58.046 | 33.333 | 5.39 | 0.00 | 0.00 | 4.84 |
3076 | 3811 | 6.753107 | ATTTATACTAGTGCCAAAAACGCT | 57.247 | 33.333 | 5.39 | 0.00 | 0.00 | 5.07 |
3077 | 3812 | 6.563222 | TTTATACTAGTGCCAAAAACGCTT | 57.437 | 33.333 | 5.39 | 0.00 | 0.00 | 4.68 |
3078 | 3813 | 6.563222 | TTATACTAGTGCCAAAAACGCTTT | 57.437 | 33.333 | 5.39 | 0.00 | 0.00 | 3.51 |
3079 | 3814 | 3.793797 | ACTAGTGCCAAAAACGCTTTT | 57.206 | 38.095 | 0.00 | 0.00 | 35.02 | 2.27 |
3080 | 3815 | 4.118093 | ACTAGTGCCAAAAACGCTTTTT | 57.882 | 36.364 | 0.00 | 0.00 | 43.20 | 1.94 |
3081 | 3816 | 5.251601 | ACTAGTGCCAAAAACGCTTTTTA | 57.748 | 34.783 | 0.86 | 0.00 | 40.65 | 1.52 |
3082 | 3817 | 5.838529 | ACTAGTGCCAAAAACGCTTTTTAT | 58.161 | 33.333 | 0.86 | 0.00 | 40.65 | 1.40 |
3083 | 3818 | 6.972722 | ACTAGTGCCAAAAACGCTTTTTATA | 58.027 | 32.000 | 0.86 | 0.00 | 40.65 | 0.98 |
3084 | 3819 | 7.599171 | ACTAGTGCCAAAAACGCTTTTTATAT | 58.401 | 30.769 | 0.86 | 0.00 | 40.65 | 0.86 |
3085 | 3820 | 8.085909 | ACTAGTGCCAAAAACGCTTTTTATATT | 58.914 | 29.630 | 0.86 | 0.00 | 40.65 | 1.28 |
3086 | 3821 | 7.722795 | AGTGCCAAAAACGCTTTTTATATTT | 57.277 | 28.000 | 0.86 | 0.00 | 40.65 | 1.40 |
3087 | 3822 | 8.148807 | AGTGCCAAAAACGCTTTTTATATTTT | 57.851 | 26.923 | 0.86 | 0.00 | 40.65 | 1.82 |
3088 | 3823 | 8.067189 | AGTGCCAAAAACGCTTTTTATATTTTG | 58.933 | 29.630 | 0.86 | 0.00 | 40.65 | 2.44 |
3093 | 3828 | 9.922305 | CAAAAACGCTTTTTATATTTTGGACAA | 57.078 | 25.926 | 0.86 | 0.00 | 40.65 | 3.18 |
3095 | 3830 | 9.535878 | AAAACGCTTTTTATATTTTGGACAAGA | 57.464 | 25.926 | 0.00 | 0.00 | 32.90 | 3.02 |
3096 | 3831 | 8.742554 | AACGCTTTTTATATTTTGGACAAGAG | 57.257 | 30.769 | 0.00 | 0.00 | 0.00 | 2.85 |
3097 | 3832 | 7.312899 | ACGCTTTTTATATTTTGGACAAGAGG | 58.687 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
3098 | 3833 | 6.751888 | CGCTTTTTATATTTTGGACAAGAGGG | 59.248 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
3099 | 3834 | 7.362574 | CGCTTTTTATATTTTGGACAAGAGGGA | 60.363 | 37.037 | 0.00 | 0.00 | 0.00 | 4.20 |
3100 | 3835 | 7.976175 | GCTTTTTATATTTTGGACAAGAGGGAG | 59.024 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
3101 | 3836 | 8.950007 | TTTTTATATTTTGGACAAGAGGGAGT | 57.050 | 30.769 | 0.00 | 0.00 | 0.00 | 3.85 |
3103 | 3838 | 9.457436 | TTTTATATTTTGGACAAGAGGGAGTAC | 57.543 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
3104 | 3839 | 4.993705 | ATTTTGGACAAGAGGGAGTACA | 57.006 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
3105 | 3840 | 4.781775 | TTTTGGACAAGAGGGAGTACAA | 57.218 | 40.909 | 0.00 | 0.00 | 36.82 | 2.41 |
3106 | 3841 | 4.781775 | TTTGGACAAGAGGGAGTACAAA | 57.218 | 40.909 | 0.00 | 0.00 | 44.06 | 2.83 |
3107 | 3842 | 3.764237 | TGGACAAGAGGGAGTACAAAC | 57.236 | 47.619 | 0.00 | 0.00 | 0.00 | 2.93 |
3262 | 3997 | 6.315393 | TCCAACTTTCAACTTGTAGAAGTGAC | 59.685 | 38.462 | 5.96 | 0.00 | 41.87 | 3.67 |
3271 | 4006 | 7.771361 | TCAACTTGTAGAAGTGACCATTTGTAA | 59.229 | 33.333 | 5.96 | 0.00 | 41.87 | 2.41 |
3311 | 4047 | 4.718961 | AGTGCTCACCTCTACAAATTGTT | 58.281 | 39.130 | 3.17 | 0.00 | 0.00 | 2.83 |
3335 | 4071 | 0.916086 | AAACACTCTGGGGACACACA | 59.084 | 50.000 | 0.00 | 0.00 | 35.60 | 3.72 |
3336 | 4072 | 0.916086 | AACACTCTGGGGACACACAA | 59.084 | 50.000 | 0.00 | 0.00 | 35.60 | 3.33 |
3368 | 4104 | 2.223144 | GCCATTTTGAAGCCGGTTTTTC | 59.777 | 45.455 | 4.57 | 6.76 | 0.00 | 2.29 |
3371 | 4107 | 3.897141 | TTTTGAAGCCGGTTTTTCCTT | 57.103 | 38.095 | 4.57 | 0.00 | 0.00 | 3.36 |
3372 | 4108 | 3.897141 | TTTGAAGCCGGTTTTTCCTTT | 57.103 | 38.095 | 4.57 | 0.00 | 0.00 | 3.11 |
3400 | 4136 | 5.096443 | TCTTTTGCTGGGTTTTCAATTGT | 57.904 | 34.783 | 5.13 | 0.00 | 0.00 | 2.71 |
3516 | 4253 | 9.487790 | TCTTTTCATGAGTTTCAAAAAGTGTTT | 57.512 | 25.926 | 11.58 | 0.00 | 36.41 | 2.83 |
3534 | 4271 | 9.900710 | AAAGTGTTTACAAAATTTGGGAAAAAC | 57.099 | 25.926 | 13.88 | 13.88 | 32.39 | 2.43 |
3577 | 4314 | 7.788846 | CACACTGTTAAAATTTGAAATTGCTCG | 59.211 | 33.333 | 3.62 | 0.00 | 0.00 | 5.03 |
3578 | 4315 | 6.787043 | CACTGTTAAAATTTGAAATTGCTCGC | 59.213 | 34.615 | 3.62 | 0.00 | 0.00 | 5.03 |
3593 | 4331 | 9.464248 | GAAATTGCTCGCAAATTTTACTAAATG | 57.536 | 29.630 | 8.54 | 0.00 | 39.55 | 2.32 |
3598 | 4336 | 7.649705 | TGCTCGCAAATTTTACTAAATGTTCAA | 59.350 | 29.630 | 0.00 | 0.00 | 34.27 | 2.69 |
3601 | 4339 | 9.393249 | TCGCAAATTTTACTAAATGTTCAAGAG | 57.607 | 29.630 | 0.00 | 0.00 | 34.27 | 2.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.649277 | CTCGAAGTGGCCCAGGACG | 62.649 | 68.421 | 0.00 | 0.00 | 0.00 | 4.79 |
2 | 3 | 3.706373 | GCTCGAAGTGGCCCAGGA | 61.706 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
3 | 4 | 3.965539 | CTGCTCGAAGTGGCCCAGG | 62.966 | 68.421 | 0.00 | 0.00 | 0.00 | 4.45 |
4 | 5 | 2.435586 | CTGCTCGAAGTGGCCCAG | 60.436 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
8 | 9 | 3.984193 | ATGGGCTGCTCGAAGTGGC | 62.984 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
9 | 10 | 2.110967 | CATGGGCTGCTCGAAGTGG | 61.111 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
10 | 11 | 2.110967 | CCATGGGCTGCTCGAAGTG | 61.111 | 63.158 | 2.85 | 0.00 | 0.00 | 3.16 |
12 | 13 | 2.110967 | CACCATGGGCTGCTCGAAG | 61.111 | 63.158 | 18.09 | 0.00 | 0.00 | 3.79 |
14 | 15 | 4.783621 | GCACCATGGGCTGCTCGA | 62.784 | 66.667 | 18.09 | 0.00 | 30.89 | 4.04 |
15 | 16 | 2.946172 | TATGCACCATGGGCTGCTCG | 62.946 | 60.000 | 23.49 | 2.89 | 33.31 | 5.03 |
16 | 17 | 1.152902 | TATGCACCATGGGCTGCTC | 60.153 | 57.895 | 23.49 | 0.00 | 33.31 | 4.26 |
17 | 18 | 1.454479 | GTATGCACCATGGGCTGCT | 60.454 | 57.895 | 23.49 | 13.83 | 33.31 | 4.24 |
18 | 19 | 1.321805 | TTGTATGCACCATGGGCTGC | 61.322 | 55.000 | 18.09 | 18.13 | 32.96 | 5.25 |
19 | 20 | 0.742505 | CTTGTATGCACCATGGGCTG | 59.257 | 55.000 | 18.09 | 7.40 | 0.00 | 4.85 |
21 | 22 | 1.473258 | TTCTTGTATGCACCATGGGC | 58.527 | 50.000 | 18.09 | 16.81 | 0.00 | 5.36 |
22 | 23 | 3.355378 | TCTTTCTTGTATGCACCATGGG | 58.645 | 45.455 | 18.09 | 6.26 | 0.00 | 4.00 |
23 | 24 | 5.450965 | GGAATCTTTCTTGTATGCACCATGG | 60.451 | 44.000 | 11.19 | 11.19 | 0.00 | 3.66 |
24 | 25 | 5.125900 | TGGAATCTTTCTTGTATGCACCATG | 59.874 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
25 | 26 | 5.126061 | GTGGAATCTTTCTTGTATGCACCAT | 59.874 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
26 | 27 | 4.458989 | GTGGAATCTTTCTTGTATGCACCA | 59.541 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
27 | 28 | 4.458989 | TGTGGAATCTTTCTTGTATGCACC | 59.541 | 41.667 | 0.00 | 0.00 | 0.00 | 5.01 |
28 | 29 | 5.627499 | TGTGGAATCTTTCTTGTATGCAC | 57.373 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
29 | 30 | 6.003326 | TCTTGTGGAATCTTTCTTGTATGCA | 58.997 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
30 | 31 | 6.150140 | AGTCTTGTGGAATCTTTCTTGTATGC | 59.850 | 38.462 | 0.00 | 0.00 | 0.00 | 3.14 |
31 | 32 | 7.678947 | AGTCTTGTGGAATCTTTCTTGTATG | 57.321 | 36.000 | 0.00 | 0.00 | 0.00 | 2.39 |
32 | 33 | 9.442047 | CTAAGTCTTGTGGAATCTTTCTTGTAT | 57.558 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
33 | 34 | 7.387948 | GCTAAGTCTTGTGGAATCTTTCTTGTA | 59.612 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
35 | 36 | 6.205464 | TGCTAAGTCTTGTGGAATCTTTCTTG | 59.795 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
36 | 37 | 6.299141 | TGCTAAGTCTTGTGGAATCTTTCTT | 58.701 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
37 | 38 | 5.869579 | TGCTAAGTCTTGTGGAATCTTTCT | 58.130 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
38 | 39 | 6.749923 | ATGCTAAGTCTTGTGGAATCTTTC | 57.250 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
39 | 40 | 7.168219 | TGTATGCTAAGTCTTGTGGAATCTTT | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
40 | 41 | 6.711277 | TGTATGCTAAGTCTTGTGGAATCTT | 58.289 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
44 | 45 | 5.932303 | GTCTTGTATGCTAAGTCTTGTGGAA | 59.068 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
45 | 46 | 5.011635 | TGTCTTGTATGCTAAGTCTTGTGGA | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
46 | 47 | 5.237815 | TGTCTTGTATGCTAAGTCTTGTGG | 58.762 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
47 | 48 | 6.646653 | TCTTGTCTTGTATGCTAAGTCTTGTG | 59.353 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
48 | 49 | 6.759272 | TCTTGTCTTGTATGCTAAGTCTTGT | 58.241 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
49 | 50 | 7.386299 | AGTTCTTGTCTTGTATGCTAAGTCTTG | 59.614 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
50 | 51 | 7.445945 | AGTTCTTGTCTTGTATGCTAAGTCTT | 58.554 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
52 | 53 | 6.311690 | GGAGTTCTTGTCTTGTATGCTAAGTC | 59.688 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
53 | 54 | 6.014156 | AGGAGTTCTTGTCTTGTATGCTAAGT | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
54 | 55 | 6.402222 | AGGAGTTCTTGTCTTGTATGCTAAG | 58.598 | 40.000 | 0.00 | 0.00 | 0.00 | 2.18 |
55 | 56 | 6.211584 | AGAGGAGTTCTTGTCTTGTATGCTAA | 59.788 | 38.462 | 0.00 | 0.00 | 29.61 | 3.09 |
58 | 59 | 4.826556 | AGAGGAGTTCTTGTCTTGTATGC | 58.173 | 43.478 | 0.00 | 0.00 | 29.61 | 3.14 |
59 | 60 | 5.047021 | TGGAGAGGAGTTCTTGTCTTGTATG | 60.047 | 44.000 | 0.00 | 0.00 | 35.87 | 2.39 |
60 | 61 | 5.046950 | GTGGAGAGGAGTTCTTGTCTTGTAT | 60.047 | 44.000 | 0.00 | 0.00 | 35.87 | 2.29 |
62 | 63 | 3.070302 | GTGGAGAGGAGTTCTTGTCTTGT | 59.930 | 47.826 | 0.00 | 0.00 | 35.87 | 3.16 |
63 | 64 | 3.556004 | GGTGGAGAGGAGTTCTTGTCTTG | 60.556 | 52.174 | 0.00 | 0.00 | 35.87 | 3.02 |
64 | 65 | 2.635427 | GGTGGAGAGGAGTTCTTGTCTT | 59.365 | 50.000 | 0.00 | 0.00 | 35.87 | 3.01 |
67 | 68 | 0.969894 | CGGTGGAGAGGAGTTCTTGT | 59.030 | 55.000 | 0.00 | 0.00 | 35.87 | 3.16 |
68 | 69 | 1.067495 | GTCGGTGGAGAGGAGTTCTTG | 60.067 | 57.143 | 0.00 | 0.00 | 35.87 | 3.02 |
69 | 70 | 1.258676 | GTCGGTGGAGAGGAGTTCTT | 58.741 | 55.000 | 0.00 | 0.00 | 35.87 | 2.52 |
70 | 71 | 0.961358 | CGTCGGTGGAGAGGAGTTCT | 60.961 | 60.000 | 0.00 | 0.00 | 39.43 | 3.01 |
71 | 72 | 1.242665 | ACGTCGGTGGAGAGGAGTTC | 61.243 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
72 | 73 | 0.037303 | TACGTCGGTGGAGAGGAGTT | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
74 | 75 | 1.716826 | GCTACGTCGGTGGAGAGGAG | 61.717 | 65.000 | 0.00 | 0.00 | 0.00 | 3.69 |
75 | 76 | 1.748122 | GCTACGTCGGTGGAGAGGA | 60.748 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
76 | 77 | 1.749638 | AGCTACGTCGGTGGAGAGG | 60.750 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
77 | 78 | 1.025113 | TCAGCTACGTCGGTGGAGAG | 61.025 | 60.000 | 17.78 | 0.00 | 33.43 | 3.20 |
78 | 79 | 1.002990 | TCAGCTACGTCGGTGGAGA | 60.003 | 57.895 | 17.78 | 0.00 | 33.43 | 3.71 |
82 | 83 | 1.085091 | ACTAGTCAGCTACGTCGGTG | 58.915 | 55.000 | 12.62 | 12.62 | 0.00 | 4.94 |
83 | 84 | 2.093764 | AGTACTAGTCAGCTACGTCGGT | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
84 | 85 | 2.539274 | GAGTACTAGTCAGCTACGTCGG | 59.461 | 54.545 | 0.00 | 0.00 | 0.00 | 4.79 |
85 | 86 | 2.539274 | GGAGTACTAGTCAGCTACGTCG | 59.461 | 54.545 | 0.00 | 0.00 | 0.00 | 5.12 |
86 | 87 | 3.556775 | CAGGAGTACTAGTCAGCTACGTC | 59.443 | 52.174 | 0.00 | 0.00 | 0.00 | 4.34 |
87 | 88 | 3.055240 | ACAGGAGTACTAGTCAGCTACGT | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 3.57 |
88 | 89 | 3.533547 | ACAGGAGTACTAGTCAGCTACG | 58.466 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
89 | 90 | 6.205270 | GGATAACAGGAGTACTAGTCAGCTAC | 59.795 | 46.154 | 0.00 | 0.00 | 0.00 | 3.58 |
90 | 91 | 6.297582 | GGATAACAGGAGTACTAGTCAGCTA | 58.702 | 44.000 | 0.00 | 0.00 | 0.00 | 3.32 |
92 | 93 | 4.278919 | GGGATAACAGGAGTACTAGTCAGC | 59.721 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
93 | 94 | 5.446860 | TGGGATAACAGGAGTACTAGTCAG | 58.553 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
115 | 116 | 6.109359 | GCTTATATAATGTACCAGAGGCCTG | 58.891 | 44.000 | 12.00 | 0.00 | 40.09 | 4.85 |
116 | 117 | 5.189934 | GGCTTATATAATGTACCAGAGGCCT | 59.810 | 44.000 | 3.86 | 3.86 | 0.00 | 5.19 |
117 | 118 | 5.429130 | GGCTTATATAATGTACCAGAGGCC | 58.571 | 45.833 | 0.00 | 0.00 | 0.00 | 5.19 |
118 | 119 | 5.105473 | TCGGCTTATATAATGTACCAGAGGC | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 4.70 |
119 | 120 | 6.377429 | TCTCGGCTTATATAATGTACCAGAGG | 59.623 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
120 | 121 | 7.251994 | GTCTCGGCTTATATAATGTACCAGAG | 58.748 | 42.308 | 0.00 | 7.27 | 0.00 | 3.35 |
123 | 124 | 5.776208 | TGGTCTCGGCTTATATAATGTACCA | 59.224 | 40.000 | 0.00 | 2.73 | 0.00 | 3.25 |
124 | 125 | 6.276832 | TGGTCTCGGCTTATATAATGTACC | 57.723 | 41.667 | 0.00 | 0.40 | 0.00 | 3.34 |
125 | 126 | 6.331061 | CCTGGTCTCGGCTTATATAATGTAC | 58.669 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
126 | 127 | 5.105473 | GCCTGGTCTCGGCTTATATAATGTA | 60.105 | 44.000 | 0.00 | 0.00 | 44.17 | 2.29 |
127 | 128 | 4.322801 | GCCTGGTCTCGGCTTATATAATGT | 60.323 | 45.833 | 0.00 | 0.00 | 44.17 | 2.71 |
128 | 129 | 4.184629 | GCCTGGTCTCGGCTTATATAATG | 58.815 | 47.826 | 0.00 | 0.00 | 44.17 | 1.90 |
129 | 130 | 4.473477 | GCCTGGTCTCGGCTTATATAAT | 57.527 | 45.455 | 0.00 | 0.00 | 44.17 | 1.28 |
130 | 131 | 3.955650 | GCCTGGTCTCGGCTTATATAA | 57.044 | 47.619 | 0.00 | 0.00 | 44.17 | 0.98 |
139 | 140 | 0.820074 | ATCGACTAGCCTGGTCTCGG | 60.820 | 60.000 | 6.65 | 0.00 | 0.00 | 4.63 |
140 | 141 | 1.801771 | CTATCGACTAGCCTGGTCTCG | 59.198 | 57.143 | 6.65 | 0.00 | 0.00 | 4.04 |
143 | 144 | 5.883673 | AGATAATCTATCGACTAGCCTGGTC | 59.116 | 44.000 | 0.00 | 0.00 | 40.12 | 4.02 |
144 | 145 | 5.822204 | AGATAATCTATCGACTAGCCTGGT | 58.178 | 41.667 | 0.00 | 0.00 | 40.12 | 4.00 |
147 | 148 | 9.169592 | GAGTTAAGATAATCTATCGACTAGCCT | 57.830 | 37.037 | 0.00 | 0.00 | 40.12 | 4.58 |
164 | 165 | 7.379797 | CGTGATCGTATGTGAATGAGTTAAGAT | 59.620 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
166 | 167 | 6.691388 | TCGTGATCGTATGTGAATGAGTTAAG | 59.309 | 38.462 | 0.00 | 0.00 | 38.33 | 1.85 |
169 | 170 | 4.993905 | TCGTGATCGTATGTGAATGAGTT | 58.006 | 39.130 | 0.00 | 0.00 | 38.33 | 3.01 |
170 | 171 | 4.498177 | CCTCGTGATCGTATGTGAATGAGT | 60.498 | 45.833 | 0.00 | 0.00 | 38.33 | 3.41 |
171 | 172 | 3.977579 | CCTCGTGATCGTATGTGAATGAG | 59.022 | 47.826 | 0.00 | 0.00 | 38.33 | 2.90 |
172 | 173 | 3.380320 | ACCTCGTGATCGTATGTGAATGA | 59.620 | 43.478 | 0.00 | 0.00 | 38.33 | 2.57 |
173 | 174 | 3.706698 | ACCTCGTGATCGTATGTGAATG | 58.293 | 45.455 | 0.00 | 0.00 | 38.33 | 2.67 |
174 | 175 | 4.820173 | TCTACCTCGTGATCGTATGTGAAT | 59.180 | 41.667 | 0.00 | 0.00 | 38.33 | 2.57 |
177 | 178 | 4.213482 | TGATCTACCTCGTGATCGTATGTG | 59.787 | 45.833 | 0.00 | 0.00 | 41.24 | 3.21 |
178 | 179 | 4.386711 | TGATCTACCTCGTGATCGTATGT | 58.613 | 43.478 | 0.00 | 0.00 | 41.24 | 2.29 |
179 | 180 | 5.049336 | AGTTGATCTACCTCGTGATCGTATG | 60.049 | 44.000 | 3.54 | 0.00 | 41.24 | 2.39 |
180 | 181 | 5.064558 | AGTTGATCTACCTCGTGATCGTAT | 58.935 | 41.667 | 3.54 | 0.00 | 41.24 | 3.06 |
181 | 182 | 4.449131 | AGTTGATCTACCTCGTGATCGTA | 58.551 | 43.478 | 3.54 | 0.00 | 41.24 | 3.43 |
182 | 183 | 3.280295 | AGTTGATCTACCTCGTGATCGT | 58.720 | 45.455 | 3.54 | 0.00 | 41.24 | 3.73 |
183 | 184 | 3.972950 | AGTTGATCTACCTCGTGATCG | 57.027 | 47.619 | 3.54 | 0.00 | 41.24 | 3.69 |
184 | 185 | 5.000012 | ACAAGTTGATCTACCTCGTGATC | 58.000 | 43.478 | 10.54 | 0.00 | 39.43 | 2.92 |
185 | 186 | 5.652891 | AGTACAAGTTGATCTACCTCGTGAT | 59.347 | 40.000 | 10.54 | 0.00 | 0.00 | 3.06 |
188 | 189 | 5.124138 | CAGAGTACAAGTTGATCTACCTCGT | 59.876 | 44.000 | 10.54 | 2.05 | 0.00 | 4.18 |
190 | 191 | 6.518208 | ACAGAGTACAAGTTGATCTACCTC | 57.482 | 41.667 | 10.54 | 3.53 | 0.00 | 3.85 |
191 | 192 | 6.377712 | GGTACAGAGTACAAGTTGATCTACCT | 59.622 | 42.308 | 10.54 | 0.00 | 0.00 | 3.08 |
192 | 193 | 6.405619 | GGGTACAGAGTACAAGTTGATCTACC | 60.406 | 46.154 | 10.54 | 13.23 | 0.00 | 3.18 |
193 | 194 | 6.405619 | GGGGTACAGAGTACAAGTTGATCTAC | 60.406 | 46.154 | 10.54 | 1.90 | 0.00 | 2.59 |
195 | 196 | 4.466726 | GGGGTACAGAGTACAAGTTGATCT | 59.533 | 45.833 | 10.54 | 7.05 | 0.00 | 2.75 |
196 | 197 | 4.222145 | TGGGGTACAGAGTACAAGTTGATC | 59.778 | 45.833 | 10.54 | 4.74 | 0.00 | 2.92 |
197 | 198 | 4.164981 | TGGGGTACAGAGTACAAGTTGAT | 58.835 | 43.478 | 10.54 | 0.00 | 0.00 | 2.57 |
198 | 199 | 3.578978 | TGGGGTACAGAGTACAAGTTGA | 58.421 | 45.455 | 10.54 | 0.00 | 0.00 | 3.18 |
199 | 200 | 4.504858 | GATGGGGTACAGAGTACAAGTTG | 58.495 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
200 | 201 | 3.518303 | GGATGGGGTACAGAGTACAAGTT | 59.482 | 47.826 | 9.27 | 0.00 | 0.00 | 2.66 |
201 | 202 | 3.105283 | GGATGGGGTACAGAGTACAAGT | 58.895 | 50.000 | 9.27 | 0.00 | 0.00 | 3.16 |
202 | 203 | 3.104512 | TGGATGGGGTACAGAGTACAAG | 58.895 | 50.000 | 9.27 | 0.00 | 0.00 | 3.16 |
203 | 204 | 2.835764 | GTGGATGGGGTACAGAGTACAA | 59.164 | 50.000 | 9.27 | 0.00 | 0.00 | 2.41 |
206 | 207 | 2.932184 | TGTGGATGGGGTACAGAGTA | 57.068 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
207 | 208 | 2.038863 | TTGTGGATGGGGTACAGAGT | 57.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
208 | 209 | 2.505407 | TGATTGTGGATGGGGTACAGAG | 59.495 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
210 | 211 | 3.364460 | TTGATTGTGGATGGGGTACAG | 57.636 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
211 | 212 | 4.228438 | TGTATTGATTGTGGATGGGGTACA | 59.772 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
212 | 213 | 4.787551 | TGTATTGATTGTGGATGGGGTAC | 58.212 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
214 | 215 | 4.329638 | TTGTATTGATTGTGGATGGGGT | 57.670 | 40.909 | 0.00 | 0.00 | 0.00 | 4.95 |
216 | 217 | 7.439056 | GCTTTATTTGTATTGATTGTGGATGGG | 59.561 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
217 | 218 | 7.980662 | TGCTTTATTTGTATTGATTGTGGATGG | 59.019 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
218 | 219 | 8.929827 | TGCTTTATTTGTATTGATTGTGGATG | 57.070 | 30.769 | 0.00 | 0.00 | 0.00 | 3.51 |
219 | 220 | 9.537192 | CATGCTTTATTTGTATTGATTGTGGAT | 57.463 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
221 | 222 | 8.929827 | TCATGCTTTATTTGTATTGATTGTGG | 57.070 | 30.769 | 0.00 | 0.00 | 0.00 | 4.17 |
245 | 246 | 7.647907 | TCTCAACGAGGTAAAACTTTACATC | 57.352 | 36.000 | 14.14 | 14.14 | 45.69 | 3.06 |
248 | 249 | 6.849811 | GCTTTCTCAACGAGGTAAAACTTTAC | 59.150 | 38.462 | 4.11 | 4.11 | 41.68 | 2.01 |
249 | 250 | 6.017687 | GGCTTTCTCAACGAGGTAAAACTTTA | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
250 | 251 | 5.220989 | GGCTTTCTCAACGAGGTAAAACTTT | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
251 | 252 | 4.275196 | GGCTTTCTCAACGAGGTAAAACTT | 59.725 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
252 | 253 | 3.813724 | GGCTTTCTCAACGAGGTAAAACT | 59.186 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
253 | 254 | 3.058432 | GGGCTTTCTCAACGAGGTAAAAC | 60.058 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
254 | 255 | 3.143728 | GGGCTTTCTCAACGAGGTAAAA | 58.856 | 45.455 | 0.00 | 0.00 | 0.00 | 1.52 |
256 | 257 | 1.337447 | CGGGCTTTCTCAACGAGGTAA | 60.337 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
257 | 258 | 0.245539 | CGGGCTTTCTCAACGAGGTA | 59.754 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
258 | 259 | 1.004918 | CGGGCTTTCTCAACGAGGT | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
259 | 260 | 0.320421 | TTCGGGCTTTCTCAACGAGG | 60.320 | 55.000 | 0.00 | 0.00 | 34.85 | 4.63 |
260 | 261 | 0.790814 | GTTCGGGCTTTCTCAACGAG | 59.209 | 55.000 | 0.00 | 0.00 | 34.85 | 4.18 |
262 | 263 | 0.882927 | TGGTTCGGGCTTTCTCAACG | 60.883 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
263 | 264 | 1.266989 | CTTGGTTCGGGCTTTCTCAAC | 59.733 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
264 | 265 | 1.142060 | TCTTGGTTCGGGCTTTCTCAA | 59.858 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
265 | 266 | 0.762418 | TCTTGGTTCGGGCTTTCTCA | 59.238 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
266 | 267 | 2.115343 | ATCTTGGTTCGGGCTTTCTC | 57.885 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
269 | 270 | 3.492337 | TGTTTATCTTGGTTCGGGCTTT | 58.508 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
270 | 271 | 3.149005 | TGTTTATCTTGGTTCGGGCTT | 57.851 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
271 | 272 | 2.871096 | TGTTTATCTTGGTTCGGGCT | 57.129 | 45.000 | 0.00 | 0.00 | 0.00 | 5.19 |
272 | 273 | 3.013921 | TGATGTTTATCTTGGTTCGGGC | 58.986 | 45.455 | 0.00 | 0.00 | 34.31 | 6.13 |
273 | 274 | 4.640201 | ACATGATGTTTATCTTGGTTCGGG | 59.360 | 41.667 | 0.00 | 0.00 | 40.76 | 5.14 |
274 | 275 | 5.586243 | AGACATGATGTTTATCTTGGTTCGG | 59.414 | 40.000 | 0.00 | 0.00 | 40.76 | 4.30 |
275 | 276 | 6.238211 | GGAGACATGATGTTTATCTTGGTTCG | 60.238 | 42.308 | 0.00 | 0.00 | 40.76 | 3.95 |
281 | 282 | 7.192852 | ACAGAGGAGACATGATGTTTATCTT | 57.807 | 36.000 | 0.00 | 0.00 | 34.31 | 2.40 |
283 | 284 | 7.439655 | GGTAACAGAGGAGACATGATGTTTATC | 59.560 | 40.741 | 0.00 | 0.00 | 33.31 | 1.75 |
327 | 329 | 2.101582 | CTGAGATAGAGGGTCCCAAACG | 59.898 | 54.545 | 11.55 | 0.00 | 0.00 | 3.60 |
329 | 331 | 3.776731 | TCTGAGATAGAGGGTCCCAAA | 57.223 | 47.619 | 11.55 | 0.00 | 0.00 | 3.28 |
338 | 340 | 2.789213 | TCCGGCAGATCTGAGATAGAG | 58.211 | 52.381 | 27.04 | 6.91 | 39.20 | 2.43 |
339 | 341 | 2.959465 | TCCGGCAGATCTGAGATAGA | 57.041 | 50.000 | 27.04 | 11.44 | 40.37 | 1.98 |
344 | 346 | 4.054671 | GAGTTAAATCCGGCAGATCTGAG | 58.945 | 47.826 | 27.04 | 17.78 | 32.47 | 3.35 |
346 | 348 | 3.134458 | GGAGTTAAATCCGGCAGATCTG | 58.866 | 50.000 | 18.84 | 18.84 | 32.47 | 2.90 |
347 | 349 | 3.477210 | GGAGTTAAATCCGGCAGATCT | 57.523 | 47.619 | 6.14 | 0.00 | 32.47 | 2.75 |
365 | 367 | 4.448210 | GCTCATTTTTATAGGGTGACGGA | 58.552 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
387 | 389 | 3.726517 | CAAGTGCCACCGCCTTCG | 61.727 | 66.667 | 0.00 | 0.00 | 0.00 | 3.79 |
441 | 444 | 3.097614 | ACGAAGCAGATAAGGGTACAGT | 58.902 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
442 | 445 | 3.802948 | ACGAAGCAGATAAGGGTACAG | 57.197 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
525 | 528 | 8.898761 | TGATGTTATTTTTAATAGACGCATGGT | 58.101 | 29.630 | 0.00 | 0.00 | 0.00 | 3.55 |
526 | 529 | 9.897744 | ATGATGTTATTTTTAATAGACGCATGG | 57.102 | 29.630 | 0.00 | 0.00 | 0.00 | 3.66 |
549 | 552 | 2.427095 | CCGTCAGTCCTCACATGTATGA | 59.573 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
596 | 599 | 3.003689 | ACCGTTCAACTTTGCTTGATCTG | 59.996 | 43.478 | 0.00 | 0.00 | 30.19 | 2.90 |
605 | 608 | 3.001838 | TGACAATCGACCGTTCAACTTTG | 59.998 | 43.478 | 0.00 | 0.00 | 0.00 | 2.77 |
634 | 659 | 1.811266 | CCTCGGCCGTCATGAACAG | 60.811 | 63.158 | 27.15 | 12.32 | 0.00 | 3.16 |
639 | 664 | 1.464376 | ATACTCCCTCGGCCGTCATG | 61.464 | 60.000 | 27.15 | 14.85 | 0.00 | 3.07 |
642 | 667 | 0.526662 | CATATACTCCCTCGGCCGTC | 59.473 | 60.000 | 27.15 | 0.00 | 0.00 | 4.79 |
643 | 668 | 0.111832 | TCATATACTCCCTCGGCCGT | 59.888 | 55.000 | 27.15 | 7.03 | 0.00 | 5.68 |
644 | 669 | 1.475403 | ATCATATACTCCCTCGGCCG | 58.525 | 55.000 | 22.12 | 22.12 | 0.00 | 6.13 |
645 | 670 | 4.215908 | TCATATCATATACTCCCTCGGCC | 58.784 | 47.826 | 0.00 | 0.00 | 0.00 | 6.13 |
646 | 671 | 5.335269 | CGATCATATCATATACTCCCTCGGC | 60.335 | 48.000 | 0.00 | 0.00 | 0.00 | 5.54 |
647 | 672 | 5.335269 | GCGATCATATCATATACTCCCTCGG | 60.335 | 48.000 | 0.00 | 0.00 | 0.00 | 4.63 |
649 | 674 | 5.536538 | TGGCGATCATATCATATACTCCCTC | 59.463 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
650 | 675 | 5.458595 | TGGCGATCATATCATATACTCCCT | 58.541 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
651 | 676 | 5.791336 | TGGCGATCATATCATATACTCCC | 57.209 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
652 | 677 | 5.636965 | GCATGGCGATCATATCATATACTCC | 59.363 | 44.000 | 0.00 | 0.00 | 34.12 | 3.85 |
710 | 897 | 3.006217 | AGGAGTACCTACGTTTGTTCCAC | 59.994 | 47.826 | 0.00 | 0.00 | 45.83 | 4.02 |
756 | 944 | 6.915544 | ACATTCTGCTTCTATATGTGTGTG | 57.084 | 37.500 | 0.00 | 0.00 | 0.00 | 3.82 |
846 | 1042 | 0.536460 | AATTTATAGGCCGCACGGGG | 60.536 | 55.000 | 11.65 | 0.50 | 35.78 | 5.73 |
849 | 1046 | 0.040425 | GGCAATTTATAGGCCGCACG | 60.040 | 55.000 | 0.00 | 0.00 | 38.04 | 5.34 |
1155 | 1381 | 1.573932 | CATGCCGTTGTGCGAGAAA | 59.426 | 52.632 | 0.00 | 0.00 | 44.77 | 2.52 |
1279 | 1505 | 1.973138 | CGACAGGCAAGAAAATGCTG | 58.027 | 50.000 | 0.00 | 0.00 | 45.68 | 4.41 |
1297 | 1528 | 5.284660 | CCGTACAAAGTACAAACTAGTAGCG | 59.715 | 44.000 | 0.00 | 0.00 | 33.75 | 4.26 |
1352 | 1606 | 8.821147 | ACACTGTGAACGTGTTATCTAATTTA | 57.179 | 30.769 | 15.86 | 0.00 | 42.56 | 1.40 |
1353 | 1607 | 7.439955 | TGACACTGTGAACGTGTTATCTAATTT | 59.560 | 33.333 | 15.86 | 0.00 | 44.95 | 1.82 |
1399 | 1668 | 7.624360 | TGTTGATTACACTTTCTCTGTTTGT | 57.376 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1524 | 1855 | 3.531538 | CACGTAGGTTGCCAAGTCATAT | 58.468 | 45.455 | 0.00 | 0.00 | 0.00 | 1.78 |
1525 | 1856 | 2.933492 | GCACGTAGGTTGCCAAGTCATA | 60.933 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
1526 | 1857 | 1.808411 | CACGTAGGTTGCCAAGTCAT | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1527 | 1858 | 0.882927 | GCACGTAGGTTGCCAAGTCA | 60.883 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1536 | 1867 | 1.165270 | GCCAAATCTGCACGTAGGTT | 58.835 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1538 | 1869 | 1.705337 | CCGCCAAATCTGCACGTAGG | 61.705 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1628 | 2236 | 3.031013 | ACCAATATTGCTAACTTGGGGC | 58.969 | 45.455 | 10.11 | 0.00 | 41.97 | 5.80 |
1636 | 2272 | 4.640201 | GGCTGAACTCACCAATATTGCTAA | 59.360 | 41.667 | 10.11 | 0.00 | 0.00 | 3.09 |
1642 | 2278 | 3.719268 | TGTGGCTGAACTCACCAATAT | 57.281 | 42.857 | 3.55 | 0.00 | 34.63 | 1.28 |
1643 | 2279 | 3.719268 | ATGTGGCTGAACTCACCAATA | 57.281 | 42.857 | 3.55 | 0.00 | 34.63 | 1.90 |
1665 | 2301 | 5.450592 | TGCATAGCAACAAATTTGACTCA | 57.549 | 34.783 | 24.64 | 9.82 | 34.76 | 3.41 |
1682 | 2318 | 6.866248 | ACATTACACGTCGATCATTATGCATA | 59.134 | 34.615 | 1.16 | 1.16 | 0.00 | 3.14 |
1723 | 2380 | 1.394917 | CAGTCGCTTTTCTCCCGATTG | 59.605 | 52.381 | 0.00 | 0.00 | 33.61 | 2.67 |
1757 | 2414 | 1.666700 | CCTTCAACCGTTCAACGTCAA | 59.333 | 47.619 | 9.52 | 0.00 | 40.58 | 3.18 |
1768 | 2425 | 5.449304 | GTGTTGAAAGTTATCCTTCAACCG | 58.551 | 41.667 | 18.72 | 0.00 | 38.74 | 4.44 |
1775 | 2432 | 7.797038 | AAGTTTACGTGTTGAAAGTTATCCT | 57.203 | 32.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1845 | 2506 | 1.154016 | GCTTGTCAGCTGCATGCAG | 60.154 | 57.895 | 37.81 | 37.81 | 45.94 | 4.41 |
1904 | 2565 | 1.841663 | CGTAGTTGGCGTTGCTGCTT | 61.842 | 55.000 | 0.00 | 0.00 | 34.52 | 3.91 |
1958 | 2619 | 1.098712 | TGTTTGTGCCGTTGGAGACC | 61.099 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1969 | 2630 | 3.234368 | CACAGTTCCGTGTTTGTGC | 57.766 | 52.632 | 0.00 | 0.00 | 35.11 | 4.57 |
2390 | 3066 | 3.755628 | GCGTAGTGCAGGTCCGGA | 61.756 | 66.667 | 0.00 | 0.00 | 45.45 | 5.14 |
2496 | 3172 | 2.034999 | GGCGTTCATGTCCCCCAA | 59.965 | 61.111 | 0.00 | 0.00 | 0.00 | 4.12 |
2557 | 3233 | 0.249573 | GTCCCAGAAAACGTGGTCGA | 60.250 | 55.000 | 0.00 | 0.00 | 40.62 | 4.20 |
2567 | 3243 | 1.982958 | GGGTGGTAGAAGTCCCAGAAA | 59.017 | 52.381 | 0.00 | 0.00 | 39.68 | 2.52 |
2826 | 3537 | 9.476928 | AGATGATGATTTTGGAGAGAGAAAAAT | 57.523 | 29.630 | 0.00 | 0.00 | 36.47 | 1.82 |
2832 | 3543 | 4.211584 | CGCAGATGATGATTTTGGAGAGAG | 59.788 | 45.833 | 0.00 | 0.00 | 0.00 | 3.20 |
2834 | 3545 | 3.875727 | ACGCAGATGATGATTTTGGAGAG | 59.124 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
2873 | 3584 | 3.610040 | TCCTTGTTACACGCAGATGAT | 57.390 | 42.857 | 0.00 | 0.00 | 0.00 | 2.45 |
2882 | 3593 | 7.075741 | GTCAACATGTACAATCCTTGTTACAC | 58.924 | 38.462 | 10.59 | 7.69 | 42.22 | 2.90 |
3000 | 3735 | 1.308998 | AGACGTTGACCAAAGGCTTG | 58.691 | 50.000 | 0.00 | 0.00 | 34.46 | 4.01 |
3058 | 3793 | 4.904253 | AAAAGCGTTTTTGGCACTAGTA | 57.096 | 36.364 | 9.31 | 0.00 | 35.26 | 1.82 |
3060 | 3795 | 8.460831 | AATATAAAAAGCGTTTTTGGCACTAG | 57.539 | 30.769 | 15.45 | 0.00 | 42.41 | 2.57 |
3061 | 3796 | 8.819643 | AAATATAAAAAGCGTTTTTGGCACTA | 57.180 | 26.923 | 15.45 | 0.00 | 42.41 | 2.74 |
3062 | 3797 | 7.722795 | AAATATAAAAAGCGTTTTTGGCACT | 57.277 | 28.000 | 15.45 | 0.00 | 42.41 | 4.40 |
3063 | 3798 | 7.322461 | CCAAAATATAAAAAGCGTTTTTGGCAC | 59.678 | 33.333 | 15.45 | 0.00 | 43.31 | 5.01 |
3064 | 3799 | 7.226720 | TCCAAAATATAAAAAGCGTTTTTGGCA | 59.773 | 29.630 | 15.45 | 0.00 | 46.40 | 4.92 |
3065 | 3800 | 7.532546 | GTCCAAAATATAAAAAGCGTTTTTGGC | 59.467 | 33.333 | 15.45 | 8.50 | 46.40 | 4.52 |
3067 | 3802 | 9.922305 | TTGTCCAAAATATAAAAAGCGTTTTTG | 57.078 | 25.926 | 15.45 | 6.80 | 42.41 | 2.44 |
3069 | 3804 | 9.535878 | TCTTGTCCAAAATATAAAAAGCGTTTT | 57.464 | 25.926 | 14.68 | 14.68 | 40.15 | 2.43 |
3070 | 3805 | 9.191995 | CTCTTGTCCAAAATATAAAAAGCGTTT | 57.808 | 29.630 | 0.00 | 0.00 | 0.00 | 3.60 |
3071 | 3806 | 7.812669 | CCTCTTGTCCAAAATATAAAAAGCGTT | 59.187 | 33.333 | 0.00 | 0.00 | 0.00 | 4.84 |
3072 | 3807 | 7.312899 | CCTCTTGTCCAAAATATAAAAAGCGT | 58.687 | 34.615 | 0.00 | 0.00 | 0.00 | 5.07 |
3073 | 3808 | 6.751888 | CCCTCTTGTCCAAAATATAAAAAGCG | 59.248 | 38.462 | 0.00 | 0.00 | 0.00 | 4.68 |
3074 | 3809 | 7.836842 | TCCCTCTTGTCCAAAATATAAAAAGC | 58.163 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
3075 | 3810 | 9.025041 | ACTCCCTCTTGTCCAAAATATAAAAAG | 57.975 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
3076 | 3811 | 8.950007 | ACTCCCTCTTGTCCAAAATATAAAAA | 57.050 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
3077 | 3812 | 9.457436 | GTACTCCCTCTTGTCCAAAATATAAAA | 57.543 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
3078 | 3813 | 8.607713 | TGTACTCCCTCTTGTCCAAAATATAAA | 58.392 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3079 | 3814 | 8.153221 | TGTACTCCCTCTTGTCCAAAATATAA | 57.847 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
3080 | 3815 | 7.743116 | TGTACTCCCTCTTGTCCAAAATATA | 57.257 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
3081 | 3816 | 6.636454 | TGTACTCCCTCTTGTCCAAAATAT | 57.364 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
3082 | 3817 | 6.442541 | TTGTACTCCCTCTTGTCCAAAATA | 57.557 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
3083 | 3818 | 4.993705 | TGTACTCCCTCTTGTCCAAAAT | 57.006 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
3084 | 3819 | 4.781775 | TTGTACTCCCTCTTGTCCAAAA | 57.218 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
3085 | 3820 | 4.457466 | GTTTGTACTCCCTCTTGTCCAAA | 58.543 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
3086 | 3821 | 3.181448 | GGTTTGTACTCCCTCTTGTCCAA | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.53 |
3087 | 3822 | 2.370849 | GGTTTGTACTCCCTCTTGTCCA | 59.629 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3088 | 3823 | 2.370849 | TGGTTTGTACTCCCTCTTGTCC | 59.629 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3089 | 3824 | 3.764237 | TGGTTTGTACTCCCTCTTGTC | 57.236 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
3090 | 3825 | 4.513406 | TTTGGTTTGTACTCCCTCTTGT | 57.487 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
3091 | 3826 | 5.845391 | TTTTTGGTTTGTACTCCCTCTTG | 57.155 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
3115 | 3850 | 4.780815 | TGCATAGTAAAATCCCAGTGAGG | 58.219 | 43.478 | 0.00 | 0.00 | 37.03 | 3.86 |
3116 | 3851 | 5.295292 | CACTGCATAGTAAAATCCCAGTGAG | 59.705 | 44.000 | 11.26 | 0.00 | 46.95 | 3.51 |
3149 | 3884 | 5.067674 | TCTGTTTGAAAATCCCAGTCAACTG | 59.932 | 40.000 | 3.08 | 3.08 | 43.40 | 3.16 |
3217 | 3952 | 6.503589 | TGGAACGTGGAACCATTTTTATAG | 57.496 | 37.500 | 0.00 | 0.00 | 0.00 | 1.31 |
3262 | 3997 | 3.420893 | TGGAGCTCCAACTTACAAATGG | 58.579 | 45.455 | 33.41 | 0.00 | 44.35 | 3.16 |
3311 | 4047 | 2.054021 | TGTCCCCAGAGTGTTTGATCA | 58.946 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
3320 | 4056 | 1.134098 | CAGTTTGTGTGTCCCCAGAGT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.24 |
3322 | 4058 | 0.182537 | CCAGTTTGTGTGTCCCCAGA | 59.817 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3335 | 4071 | 0.471022 | AAAATGGCCCGACCCAGTTT | 60.471 | 50.000 | 12.01 | 12.01 | 45.29 | 2.66 |
3336 | 4072 | 1.155155 | AAAATGGCCCGACCCAGTT | 59.845 | 52.632 | 0.00 | 1.92 | 44.28 | 3.16 |
3424 | 4160 | 6.524101 | ACCAAAAGCAAACTAGAAACTGAA | 57.476 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
3487 | 4223 | 9.787532 | CACTTTTTGAAACTCATGAAAAGAGTA | 57.212 | 29.630 | 16.76 | 0.00 | 45.11 | 2.59 |
3490 | 4226 | 9.487790 | AAACACTTTTTGAAACTCATGAAAAGA | 57.512 | 25.926 | 16.76 | 1.62 | 36.80 | 2.52 |
3508 | 4245 | 9.900710 | GTTTTTCCCAAATTTTGTAAACACTTT | 57.099 | 25.926 | 8.26 | 0.00 | 0.00 | 2.66 |
3571 | 4308 | 7.649705 | TGAACATTTAGTAAAATTTGCGAGCAA | 59.350 | 29.630 | 6.39 | 6.39 | 32.87 | 3.91 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.