Multiple sequence alignment - TraesCS5B01G465100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G465100 chr5B 100.000 6779 0 0 1 6779 639684211 639677433 0.000000e+00 12519.0
1 TraesCS5B01G465100 chr5B 91.696 289 22 2 6356 6644 639620076 639620362 3.810000e-107 399.0
2 TraesCS5B01G465100 chr5A 94.300 2193 96 15 4604 6779 636415646 636413466 0.000000e+00 3330.0
3 TraesCS5B01G465100 chr5A 91.584 2020 111 26 942 2939 636419023 636417041 0.000000e+00 2734.0
4 TraesCS5B01G465100 chr5A 96.005 776 28 3 3717 4491 636416417 636415644 0.000000e+00 1258.0
5 TraesCS5B01G465100 chr5A 95.833 456 12 1 3234 3689 636416858 636416410 0.000000e+00 730.0
6 TraesCS5B01G465100 chr5A 93.262 282 18 1 6353 6634 636305949 636306229 1.360000e-111 414.0
7 TraesCS5B01G465100 chr5A 96.914 162 5 0 3074 3235 636417057 636416896 8.660000e-69 272.0
8 TraesCS5B01G465100 chr5A 93.919 148 8 1 4955 5101 320214244 320214391 8.850000e-54 222.0
9 TraesCS5B01G465100 chr5A 92.763 152 10 1 4954 5104 653299602 653299451 1.140000e-52 219.0
10 TraesCS5B01G465100 chr5A 90.476 126 5 3 835 953 636419167 636419042 7.040000e-35 159.0
11 TraesCS5B01G465100 chr5A 93.023 43 3 0 6725 6767 636306289 636306331 5.680000e-06 63.9
12 TraesCS5B01G465100 chr5D 94.712 2080 74 19 889 2939 509142243 509140171 0.000000e+00 3199.0
13 TraesCS5B01G465100 chr5D 93.222 1682 91 14 5108 6772 509138178 509136503 0.000000e+00 2453.0
14 TraesCS5B01G465100 chr5D 96.276 1262 35 4 3234 4491 509139988 509138735 0.000000e+00 2060.0
15 TraesCS5B01G465100 chr5D 95.161 496 20 3 4604 5096 509138737 509138243 0.000000e+00 780.0
16 TraesCS5B01G465100 chr5D 94.982 279 14 0 6366 6644 509020294 509020572 8.070000e-119 438.0
17 TraesCS5B01G465100 chr5D 95.062 162 8 0 3074 3235 509140187 509140026 8.720000e-64 255.0
18 TraesCS5B01G465100 chr5D 100.000 136 0 0 2938 3073 548322885 548323020 1.130000e-62 252.0
19 TraesCS5B01G465100 chr5D 88.889 81 8 1 6353 6433 509019452 509019531 1.560000e-16 99.0
20 TraesCS5B01G465100 chr5D 92.000 50 4 0 6718 6767 509020627 509020676 3.390000e-08 71.3
21 TraesCS5B01G465100 chr2D 83.901 764 96 16 1 752 567083609 567084357 0.000000e+00 704.0
22 TraesCS5B01G465100 chr2D 84.559 680 86 15 19 690 540067803 540067135 0.000000e+00 656.0
23 TraesCS5B01G465100 chr2D 82.367 431 35 21 2485 2905 465956230 465955831 3.030000e-88 337.0
24 TraesCS5B01G465100 chr4D 82.890 789 100 27 6 773 77290557 77291331 0.000000e+00 676.0
25 TraesCS5B01G465100 chr4D 98.571 140 2 0 2938 3077 405455262 405455123 1.460000e-61 248.0
26 TraesCS5B01G465100 chr4D 93.377 151 9 1 4955 5104 75266909 75266759 8.850000e-54 222.0
27 TraesCS5B01G465100 chr4D 92.105 152 11 1 4954 5104 21147894 21147743 5.330000e-51 213.0
28 TraesCS5B01G465100 chr4D 92.053 151 11 1 4955 5104 36603208 36603058 1.920000e-50 211.0
29 TraesCS5B01G465100 chr1B 84.056 715 95 15 25 731 268395104 268395807 0.000000e+00 671.0
30 TraesCS5B01G465100 chr4A 84.097 698 87 16 46 731 680366868 680367553 0.000000e+00 652.0
31 TraesCS5B01G465100 chr4A 98.551 138 2 0 2937 3074 606539412 606539275 1.890000e-60 244.0
32 TraesCS5B01G465100 chr4A 92.763 152 10 1 4953 5103 37306864 37307015 1.140000e-52 219.0
33 TraesCS5B01G465100 chr3A 83.220 733 97 21 2186 2900 328751039 328751763 0.000000e+00 649.0
34 TraesCS5B01G465100 chr3A 82.609 736 108 18 6 731 50823259 50823984 3.450000e-177 632.0
35 TraesCS5B01G465100 chr3A 81.395 430 42 17 2485 2905 646305127 646305527 3.950000e-82 316.0
36 TraesCS5B01G465100 chr3A 99.281 139 1 0 2938 3076 645561451 645561589 1.130000e-62 252.0
37 TraesCS5B01G465100 chr3A 92.357 157 11 1 4949 5104 607058405 607058561 8.850000e-54 222.0
38 TraesCS5B01G465100 chr7B 81.830 787 105 19 3 773 12968858 12968094 1.600000e-175 627.0
39 TraesCS5B01G465100 chr7B 85.240 271 27 10 2534 2796 609149403 609149138 4.030000e-67 267.0
40 TraesCS5B01G465100 chr7B 100.000 137 0 0 2938 3074 410845940 410845804 3.140000e-63 254.0
41 TraesCS5B01G465100 chr6A 82.432 740 102 16 46 773 137386066 137385343 7.470000e-174 621.0
42 TraesCS5B01G465100 chr6A 81.163 430 43 18 2485 2905 61180869 61181269 1.840000e-80 311.0
43 TraesCS5B01G465100 chr7A 80.548 766 111 25 25 773 57673938 57673194 7.680000e-154 555.0
44 TraesCS5B01G465100 chr7A 80.974 431 41 19 2485 2905 9404864 9405263 3.070000e-78 303.0
45 TraesCS5B01G465100 chr7A 86.364 264 34 2 6368 6630 89835718 89835456 3.090000e-73 287.0
46 TraesCS5B01G465100 chr6B 81.671 431 38 22 2485 2905 301624370 301624769 3.050000e-83 320.0
47 TraesCS5B01G465100 chr6B 95.146 103 4 1 4501 4603 609074110 609074009 1.960000e-35 161.0
48 TraesCS5B01G465100 chr3D 100.000 136 0 0 2938 3073 372621744 372621609 1.130000e-62 252.0
49 TraesCS5B01G465100 chr3D 92.667 150 10 1 4953 5101 187836306 187836455 1.480000e-51 215.0
50 TraesCS5B01G465100 chr3D 89.571 163 15 2 4940 5101 365520844 365521005 8.910000e-49 206.0
51 TraesCS5B01G465100 chr2B 99.275 138 1 0 2938 3075 201468590 201468453 4.060000e-62 250.0
52 TraesCS5B01G465100 chr7D 99.270 137 1 0 2938 3074 50058838 50058974 1.460000e-61 248.0
53 TraesCS5B01G465100 chr7D 92.208 154 10 2 4953 5104 55414246 55414093 4.120000e-52 217.0
54 TraesCS5B01G465100 chr7D 93.793 145 8 1 4953 5096 525768131 525767987 4.120000e-52 217.0
55 TraesCS5B01G465100 chr6D 99.270 137 1 0 2938 3074 317477346 317477210 1.460000e-61 248.0
56 TraesCS5B01G465100 chr6D 92.667 150 10 1 4953 5101 338408567 338408418 1.480000e-51 215.0
57 TraesCS5B01G465100 chr6D 91.216 148 12 1 4958 5104 90135048 90134901 4.150000e-47 200.0
58 TraesCS5B01G465100 chr6D 90.728 151 13 1 4955 5104 351233596 351233446 4.150000e-47 200.0
59 TraesCS5B01G465100 chr6D 90.323 155 12 3 4950 5101 423084154 423084308 4.150000e-47 200.0
60 TraesCS5B01G465100 chr6D 90.260 154 12 3 4955 5105 124663378 124663225 1.490000e-46 198.0
61 TraesCS5B01G465100 chr6D 90.196 153 14 1 4953 5104 141974494 141974342 1.490000e-46 198.0
62 TraesCS5B01G465100 chr6D 90.196 153 11 4 4955 5105 57999645 57999795 5.360000e-46 196.0
63 TraesCS5B01G465100 chr6D 89.241 158 15 2 4945 5101 428908329 428908485 5.360000e-46 196.0
64 TraesCS5B01G465100 chr6D 89.677 155 13 3 4948 5101 21051965 21052117 1.930000e-45 195.0
65 TraesCS5B01G465100 chr6D 91.000 100 8 1 4502 4601 79727144 79727242 4.270000e-27 134.0
66 TraesCS5B01G465100 chr4B 95.364 151 5 2 4955 5104 103804479 103804628 8.790000e-59 239.0
67 TraesCS5B01G465100 chr4B 92.715 151 10 1 4955 5104 28724143 28724293 4.120000e-52 217.0
68 TraesCS5B01G465100 chr4B 89.820 167 16 1 4955 5120 37318865 37318699 5.330000e-51 213.0
69 TraesCS5B01G465100 chr1D 92.715 151 10 1 4955 5104 225704946 225704796 4.120000e-52 217.0
70 TraesCS5B01G465100 chr1D 92.715 151 10 1 4955 5104 338937373 338937223 4.120000e-52 217.0
71 TraesCS5B01G465100 chr1D 92.568 148 10 1 4955 5101 443117194 443117341 1.920000e-50 211.0
72 TraesCS5B01G465100 chr1D 92.000 150 11 1 4953 5101 463381903 463382052 6.890000e-50 209.0
73 TraesCS5B01G465100 chr1D 91.391 151 12 1 4955 5104 125831082 125830932 8.910000e-49 206.0
74 TraesCS5B01G465100 chr1D 91.391 151 12 1 4955 5104 219479779 219479929 8.910000e-49 206.0
75 TraesCS5B01G465100 chr1D 86.702 188 21 2 4946 5132 423040746 423040562 8.910000e-49 206.0
76 TraesCS5B01G465100 chr2A 91.195 159 13 1 4947 5104 184561323 184561165 1.480000e-51 215.0
77 TraesCS5B01G465100 chrUn 90.789 152 10 4 4955 5104 81477799 81477650 4.150000e-47 200.0
78 TraesCS5B01G465100 chrUn 89.241 158 16 1 4948 5104 96474152 96473995 5.360000e-46 196.0
79 TraesCS5B01G465100 chrUn 90.066 151 14 1 4955 5104 27078514 27078664 1.930000e-45 195.0
80 TraesCS5B01G465100 chrUn 90.066 151 14 1 4955 5104 34210914 34210764 1.930000e-45 195.0
81 TraesCS5B01G465100 chrUn 90.066 151 14 1 4955 5104 141680907 141680757 1.930000e-45 195.0
82 TraesCS5B01G465100 chrUn 89.542 153 13 3 4954 5104 80232833 80232682 2.500000e-44 191.0
83 TraesCS5B01G465100 chrUn 89.333 150 15 1 4953 5101 96464809 96464958 3.230000e-43 187.0
84 TraesCS5B01G465100 chrUn 88.889 153 13 3 4955 5104 29994520 29994369 1.160000e-42 185.0
85 TraesCS5B01G465100 chrUn 89.262 149 14 2 4955 5101 99637991 99638139 1.160000e-42 185.0
86 TraesCS5B01G465100 chrUn 88.816 152 16 1 4954 5104 116432763 116432612 1.160000e-42 185.0
87 TraesCS5B01G465100 chr1A 92.000 100 7 1 4501 4600 364639630 364639532 9.170000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G465100 chr5B 639677433 639684211 6778 True 12519.000000 12519 100.000000 1 6779 1 chr5B.!!$R1 6778
1 TraesCS5B01G465100 chr5A 636413466 636419167 5701 True 1413.833333 3330 94.185333 835 6779 6 chr5A.!!$R2 5944
2 TraesCS5B01G465100 chr5D 509136503 509142243 5740 True 1749.400000 3199 94.886600 889 6772 5 chr5D.!!$R1 5883
3 TraesCS5B01G465100 chr5D 509019452 509020676 1224 False 202.766667 438 91.957000 6353 6767 3 chr5D.!!$F2 414
4 TraesCS5B01G465100 chr2D 567083609 567084357 748 False 704.000000 704 83.901000 1 752 1 chr2D.!!$F1 751
5 TraesCS5B01G465100 chr2D 540067135 540067803 668 True 656.000000 656 84.559000 19 690 1 chr2D.!!$R2 671
6 TraesCS5B01G465100 chr4D 77290557 77291331 774 False 676.000000 676 82.890000 6 773 1 chr4D.!!$F1 767
7 TraesCS5B01G465100 chr1B 268395104 268395807 703 False 671.000000 671 84.056000 25 731 1 chr1B.!!$F1 706
8 TraesCS5B01G465100 chr4A 680366868 680367553 685 False 652.000000 652 84.097000 46 731 1 chr4A.!!$F2 685
9 TraesCS5B01G465100 chr3A 328751039 328751763 724 False 649.000000 649 83.220000 2186 2900 1 chr3A.!!$F2 714
10 TraesCS5B01G465100 chr3A 50823259 50823984 725 False 632.000000 632 82.609000 6 731 1 chr3A.!!$F1 725
11 TraesCS5B01G465100 chr7B 12968094 12968858 764 True 627.000000 627 81.830000 3 773 1 chr7B.!!$R1 770
12 TraesCS5B01G465100 chr6A 137385343 137386066 723 True 621.000000 621 82.432000 46 773 1 chr6A.!!$R1 727
13 TraesCS5B01G465100 chr7A 57673194 57673938 744 True 555.000000 555 80.548000 25 773 1 chr7A.!!$R1 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 461 0.239082 TGCTTTCGCGAGAGTTACGA 59.761 50.0 25.34 0.0 43.69 3.43 F
782 843 0.248539 CGCGCCACTTAGTACTCCTC 60.249 60.0 0.00 0.0 0.00 3.71 F
783 844 0.248539 GCGCCACTTAGTACTCCTCG 60.249 60.0 0.00 0.0 0.00 4.63 F
1289 1387 0.249657 GGATTCTGCTAGGCTCGTGG 60.250 60.0 0.00 0.0 0.00 4.94 F
2979 3126 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.0 0.00 0.0 44.83 4.26 F
3703 3889 0.029300 AACATGCTGTTGTGTGACGC 59.971 50.0 0.00 0.0 39.45 5.19 F
4502 4728 0.036858 GAGTTCCACAGTGCCTCCTC 60.037 60.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1289 1387 1.099879 CAGCAGGAGCCATAACAGCC 61.100 60.000 0.0 0.0 43.56 4.85 R
2221 2334 1.812235 TGCAGAGTTATGTGGTGCAG 58.188 50.000 0.0 0.0 39.17 4.41 R
2252 2365 2.162681 AGACCAACATTAGCTTGCCAC 58.837 47.619 0.0 0.0 0.00 5.01 R
2992 3139 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.0 0.0 35.18 4.85 R
4494 4720 0.112995 ACAGGCAAAATGAGGAGGCA 59.887 50.000 0.0 0.0 0.00 4.75 R
4758 4987 0.462047 AGGGTGCTTATTTCGAGCCG 60.462 55.000 0.0 0.0 39.38 5.52 R
5887 6183 1.005450 TCCTGGTAAAACTGGATGCCC 59.995 52.381 0.0 0.0 34.09 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 30 4.088071 GCACGAAAAACGCCTATTCTTTTC 59.912 41.667 0.00 0.00 46.94 2.29
45 54 3.261441 TTTTTCGCGAGAGTCACGT 57.739 47.368 9.59 0.00 43.69 4.49
79 89 0.383949 GAGGCACGGTTTTGCTTTCA 59.616 50.000 0.00 0.00 42.56 2.69
293 330 2.356313 CGAGAGGCACGCTTGTGT 60.356 61.111 0.00 0.00 45.65 3.72
299 336 1.063488 GGCACGCTTGTGTTTTCGT 59.937 52.632 0.00 0.00 45.65 3.85
416 457 0.582005 GTTGTGCTTTCGCGAGAGTT 59.418 50.000 25.34 0.00 43.69 3.01
420 461 0.239082 TGCTTTCGCGAGAGTTACGA 59.761 50.000 25.34 0.00 43.69 3.43
495 539 3.678056 ACGAGAGTCATGGTTTTGCTA 57.322 42.857 0.00 0.00 44.19 3.49
497 541 4.579869 ACGAGAGTCATGGTTTTGCTATT 58.420 39.130 0.00 0.00 44.19 1.73
505 549 3.052455 TGGTTTTGCTATTGCGAGAGA 57.948 42.857 0.00 0.00 43.34 3.10
552 600 2.719046 CGATCGTGCCACTTTTGAAAAC 59.281 45.455 7.03 0.00 0.00 2.43
554 602 1.738350 TCGTGCCACTTTTGAAAACGA 59.262 42.857 0.00 0.00 0.00 3.85
645 697 7.117092 GGATCTAGTTTTAAAGATCTCGATGCC 59.883 40.741 12.45 8.31 44.94 4.40
676 728 3.663995 TGGTGAAAACGGTTCGAGATA 57.336 42.857 0.00 0.00 0.00 1.98
773 834 3.498834 CATGCAGCGCGCCACTTA 61.499 61.111 30.33 10.71 41.33 2.24
775 836 3.958147 ATGCAGCGCGCCACTTAGT 62.958 57.895 30.33 3.60 41.33 2.24
777 838 2.799540 GCAGCGCGCCACTTAGTAC 61.800 63.158 30.33 0.00 32.94 2.73
778 839 1.153823 CAGCGCGCCACTTAGTACT 60.154 57.895 30.33 0.79 0.00 2.73
779 840 1.139095 AGCGCGCCACTTAGTACTC 59.861 57.895 30.33 0.00 0.00 2.59
782 843 0.248539 CGCGCCACTTAGTACTCCTC 60.249 60.000 0.00 0.00 0.00 3.71
783 844 0.248539 GCGCCACTTAGTACTCCTCG 60.249 60.000 0.00 0.00 0.00 4.63
784 845 1.376543 CGCCACTTAGTACTCCTCGA 58.623 55.000 0.00 0.00 0.00 4.04
785 846 1.948145 CGCCACTTAGTACTCCTCGAT 59.052 52.381 0.00 0.00 0.00 3.59
786 847 2.358267 CGCCACTTAGTACTCCTCGATT 59.642 50.000 0.00 0.00 0.00 3.34
787 848 3.181489 CGCCACTTAGTACTCCTCGATTT 60.181 47.826 0.00 0.00 0.00 2.17
788 849 4.677250 CGCCACTTAGTACTCCTCGATTTT 60.677 45.833 0.00 0.00 0.00 1.82
789 850 5.176592 GCCACTTAGTACTCCTCGATTTTT 58.823 41.667 0.00 0.00 0.00 1.94
816 877 4.618920 TTTTTGAGGGTGAGTACTCCTC 57.381 45.455 20.11 18.98 41.16 3.71
817 878 1.835494 TTGAGGGTGAGTACTCCTCG 58.165 55.000 20.11 0.00 43.64 4.63
818 879 0.989602 TGAGGGTGAGTACTCCTCGA 59.010 55.000 20.11 8.35 43.64 4.04
819 880 1.564818 TGAGGGTGAGTACTCCTCGAT 59.435 52.381 20.11 2.59 43.64 3.59
820 881 2.025226 TGAGGGTGAGTACTCCTCGATT 60.025 50.000 20.11 1.24 43.64 3.34
821 882 2.359531 GAGGGTGAGTACTCCTCGATTG 59.640 54.545 20.11 0.00 43.64 2.67
822 883 2.025226 AGGGTGAGTACTCCTCGATTGA 60.025 50.000 20.11 0.00 43.64 2.57
823 884 2.959707 GGGTGAGTACTCCTCGATTGAT 59.040 50.000 20.11 0.00 43.64 2.57
824 885 3.243569 GGGTGAGTACTCCTCGATTGATG 60.244 52.174 20.11 0.00 43.64 3.07
825 886 3.632604 GGTGAGTACTCCTCGATTGATGA 59.367 47.826 20.11 0.00 43.64 2.92
826 887 4.279671 GGTGAGTACTCCTCGATTGATGAT 59.720 45.833 20.11 0.00 43.64 2.45
827 888 5.221342 GGTGAGTACTCCTCGATTGATGATT 60.221 44.000 20.11 0.00 43.64 2.57
828 889 6.276847 GTGAGTACTCCTCGATTGATGATTT 58.723 40.000 20.11 0.00 43.64 2.17
829 890 6.199908 GTGAGTACTCCTCGATTGATGATTTG 59.800 42.308 20.11 0.00 43.64 2.32
830 891 5.605534 AGTACTCCTCGATTGATGATTTGG 58.394 41.667 0.00 0.00 0.00 3.28
831 892 4.494091 ACTCCTCGATTGATGATTTGGT 57.506 40.909 0.00 0.00 0.00 3.67
832 893 4.194640 ACTCCTCGATTGATGATTTGGTG 58.805 43.478 0.00 0.00 0.00 4.17
833 894 4.080919 ACTCCTCGATTGATGATTTGGTGA 60.081 41.667 0.00 0.00 0.00 4.02
879 941 1.539388 ACATTTTCCATTCGAGCGCAA 59.461 42.857 11.47 0.00 0.00 4.85
940 1002 1.676968 CCAATCCGTGGTCACTCCA 59.323 57.895 0.00 0.00 43.20 3.86
1227 1325 4.168291 CTTCTGCCCCCTCGCTCC 62.168 72.222 0.00 0.00 0.00 4.70
1289 1387 0.249657 GGATTCTGCTAGGCTCGTGG 60.250 60.000 0.00 0.00 0.00 4.94
1290 1388 0.249657 GATTCTGCTAGGCTCGTGGG 60.250 60.000 0.00 0.00 0.00 4.61
1321 1419 0.825010 CCTGCTGCCCTGTTCAGTTT 60.825 55.000 0.00 0.00 34.21 2.66
1345 1443 3.690460 AGCGAATTTGTGGGAGAATTCT 58.310 40.909 7.95 7.95 39.14 2.40
1400 1498 5.647658 TGTTCAGTGGTTCCATTGATATGTC 59.352 40.000 15.71 7.18 33.78 3.06
1421 1519 2.287644 CCATTAGCGATCGTGCAAATGA 59.712 45.455 23.19 0.00 37.31 2.57
1427 1525 2.433808 CGATCGTGCAAATGACATGTG 58.566 47.619 1.15 0.77 0.00 3.21
1562 1660 1.065199 CCACTGGTGCAGGATGTGTAT 60.065 52.381 0.00 0.00 39.31 2.29
1578 1676 5.791336 TGTGTATCCAGTAGCCTATTCTG 57.209 43.478 0.00 0.00 0.00 3.02
1644 1742 5.499313 TGACATGGATGCTACATTCAGAAA 58.501 37.500 0.00 0.00 0.00 2.52
1648 1746 7.934457 ACATGGATGCTACATTCAGAAATTAC 58.066 34.615 0.00 0.00 0.00 1.89
1654 1752 9.294030 GATGCTACATTCAGAAATTACTTTTGG 57.706 33.333 0.00 0.00 0.00 3.28
1737 1844 9.124807 GCTAAACAACTTATGGTGTACATTTTC 57.875 33.333 0.00 0.00 41.03 2.29
1861 1973 5.536538 TGAGATGTCCTCATATGTGTAGGTC 59.463 44.000 1.90 1.32 46.38 3.85
2129 2242 8.498054 TCTTATCATTTCTGACTTGAATGTCC 57.502 34.615 0.00 0.00 36.21 4.02
2230 2343 1.610038 CTTTCAATCTGCTGCACCACA 59.390 47.619 0.00 0.00 0.00 4.17
2252 2365 5.819379 ACATAACTCTGCATACTTCACATGG 59.181 40.000 0.00 0.00 0.00 3.66
2313 2426 8.985315 TTTTCCTTGCATCTATGTTATCAGAT 57.015 30.769 0.00 0.00 31.58 2.90
2374 2493 0.670162 GCAACAGCAACAGGACATGT 59.330 50.000 0.00 0.00 46.97 3.21
2524 2652 2.302733 GTTCCATGCAAAATGTCCCCTT 59.697 45.455 0.00 0.00 0.00 3.95
2735 2864 3.228453 AGAGTACGAACACTTCTTCCCA 58.772 45.455 0.00 0.00 0.00 4.37
2763 2907 9.262358 CAAAGGCATTCTAGGACTAAGTTATAC 57.738 37.037 0.00 0.00 0.00 1.47
2842 2988 4.870123 AAATGTGCTCCTGTGCAATTTA 57.130 36.364 0.00 0.00 45.12 1.40
2860 3006 6.714356 GCAATTTATCATAGGCTTCTCTTCCT 59.286 38.462 0.00 0.00 36.51 3.36
2937 3084 9.955208 TTTATTGCATTCAATCATACATGTCTC 57.045 29.630 0.00 0.00 41.68 3.36
2938 3085 7.576861 ATTGCATTCAATCATACATGTCTCA 57.423 32.000 0.00 0.00 38.47 3.27
2939 3086 7.576861 TTGCATTCAATCATACATGTCTCAT 57.423 32.000 0.00 0.00 0.00 2.90
2940 3087 6.966021 TGCATTCAATCATACATGTCTCATG 58.034 36.000 0.00 0.40 0.00 3.07
2941 3088 6.768861 TGCATTCAATCATACATGTCTCATGA 59.231 34.615 15.25 11.27 33.47 3.07
2942 3089 7.041372 TGCATTCAATCATACATGTCTCATGAG 60.041 37.037 17.07 17.07 32.51 2.90
2943 3090 7.573283 GCATTCAATCATACATGTCTCATGAGG 60.573 40.741 22.42 8.89 32.51 3.86
2944 3091 6.490241 TCAATCATACATGTCTCATGAGGT 57.510 37.500 22.42 14.20 32.51 3.85
2945 3092 6.519382 TCAATCATACATGTCTCATGAGGTC 58.481 40.000 22.42 15.57 32.51 3.85
2946 3093 6.098695 TCAATCATACATGTCTCATGAGGTCA 59.901 38.462 22.42 20.12 32.51 4.02
2947 3094 6.683312 ATCATACATGTCTCATGAGGTCAT 57.317 37.500 22.42 21.26 36.96 3.06
2958 3105 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
2959 3106 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
2960 3107 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2961 3108 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
2962 3109 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
2963 3110 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
2964 3111 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
2965 3112 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
2966 3113 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
2967 3114 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
2978 3125 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
2979 3126 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
2980 3127 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
2981 3128 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
2982 3129 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
2983 3130 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
2984 3131 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
2985 3132 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
2986 3133 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
2987 3134 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
2988 3135 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
2989 3136 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
2990 3137 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
2991 3138 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
2992 3139 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
2993 3140 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
2994 3141 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
2995 3142 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
2996 3143 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
2997 3144 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2998 3145 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2999 3146 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3000 3147 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3001 3148 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3002 3149 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
3003 3150 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
3004 3151 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
3005 3152 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
3006 3153 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
3007 3154 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
3008 3155 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
3009 3156 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
3010 3157 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
3011 3158 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
3012 3159 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
3013 3160 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
3014 3161 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
3015 3162 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
3016 3163 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
3017 3164 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
3018 3165 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
3023 3170 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3024 3171 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3025 3172 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3026 3173 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3027 3174 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3028 3175 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3029 3176 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3030 3177 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3031 3178 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3032 3179 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
3033 3180 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
3034 3181 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
3035 3182 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
3036 3183 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
3037 3184 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3038 3185 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3039 3186 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3040 3187 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3041 3188 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3042 3189 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3063 3210 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
3064 3211 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
3065 3212 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
3066 3213 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
3067 3214 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
3068 3215 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
3069 3216 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
3070 3217 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
3071 3218 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
3083 3230 3.444850 GGCTGCCCCAATCATACAT 57.555 52.632 7.66 0.00 0.00 2.29
3084 3231 0.963962 GGCTGCCCCAATCATACATG 59.036 55.000 7.66 0.00 0.00 3.21
3085 3232 1.696063 GCTGCCCCAATCATACATGT 58.304 50.000 2.69 2.69 0.00 3.21
3086 3233 1.610522 GCTGCCCCAATCATACATGTC 59.389 52.381 0.00 0.00 0.00 3.06
3108 3255 4.941873 TCTCAATACTCGAGCAGTGTTAGA 59.058 41.667 13.61 6.38 34.34 2.10
3235 3382 7.880195 GGAGTATTACAATCAGCACCTCATATT 59.120 37.037 0.00 0.00 0.00 1.28
3236 3383 9.929180 GAGTATTACAATCAGCACCTCATATTA 57.071 33.333 0.00 0.00 0.00 0.98
3295 3481 4.669197 GCGACATTCGACATTAGTTTTGCT 60.669 41.667 0.00 0.00 43.74 3.91
3410 3596 3.018423 ACCTGCTTTTGACAAACTCCT 57.982 42.857 0.00 0.00 0.00 3.69
3411 3597 2.689983 ACCTGCTTTTGACAAACTCCTG 59.310 45.455 0.00 0.00 0.00 3.86
3412 3598 2.035066 CCTGCTTTTGACAAACTCCTGG 59.965 50.000 0.00 2.35 0.00 4.45
3413 3599 1.408702 TGCTTTTGACAAACTCCTGGC 59.591 47.619 0.00 0.22 0.00 4.85
3414 3600 1.683385 GCTTTTGACAAACTCCTGGCT 59.317 47.619 0.00 0.00 0.00 4.75
3415 3601 2.884639 GCTTTTGACAAACTCCTGGCTA 59.115 45.455 0.00 0.00 0.00 3.93
3416 3602 3.057946 GCTTTTGACAAACTCCTGGCTAG 60.058 47.826 0.00 0.00 0.00 3.42
3631 3817 7.512058 ACATATCTGTATCAGGAAGGAGACAAT 59.488 37.037 0.00 0.00 38.42 2.71
3687 3873 8.690884 TGTTTTCTTGTCATTCCTTCATTAACA 58.309 29.630 0.00 0.00 0.00 2.41
3688 3874 9.696917 GTTTTCTTGTCATTCCTTCATTAACAT 57.303 29.630 0.00 0.00 0.00 2.71
3689 3875 9.695526 TTTTCTTGTCATTCCTTCATTAACATG 57.304 29.630 0.00 0.00 0.00 3.21
3690 3876 6.855836 TCTTGTCATTCCTTCATTAACATGC 58.144 36.000 0.00 0.00 0.00 4.06
3691 3877 6.660521 TCTTGTCATTCCTTCATTAACATGCT 59.339 34.615 0.00 0.00 0.00 3.79
3692 3878 6.198650 TGTCATTCCTTCATTAACATGCTG 57.801 37.500 0.00 0.00 0.00 4.41
3693 3879 5.711506 TGTCATTCCTTCATTAACATGCTGT 59.288 36.000 0.00 0.00 0.00 4.40
3694 3880 6.209192 TGTCATTCCTTCATTAACATGCTGTT 59.791 34.615 0.00 6.74 43.88 3.16
3695 3881 6.529125 GTCATTCCTTCATTAACATGCTGTTG 59.471 38.462 10.59 0.00 41.30 3.33
3696 3882 6.209192 TCATTCCTTCATTAACATGCTGTTGT 59.791 34.615 10.59 0.00 41.30 3.32
3697 3883 5.375417 TCCTTCATTAACATGCTGTTGTG 57.625 39.130 10.59 9.41 41.30 3.33
3698 3884 4.826733 TCCTTCATTAACATGCTGTTGTGT 59.173 37.500 10.59 0.00 41.30 3.72
3699 3885 4.919168 CCTTCATTAACATGCTGTTGTGTG 59.081 41.667 10.59 7.39 41.30 3.82
3700 3886 5.278414 CCTTCATTAACATGCTGTTGTGTGA 60.278 40.000 10.59 8.97 41.30 3.58
3701 3887 5.107109 TCATTAACATGCTGTTGTGTGAC 57.893 39.130 10.59 0.00 41.30 3.67
3702 3888 3.600717 TTAACATGCTGTTGTGTGACG 57.399 42.857 10.59 0.00 41.30 4.35
3703 3889 0.029300 AACATGCTGTTGTGTGACGC 59.971 50.000 0.00 0.00 39.45 5.19
3704 3890 0.815213 ACATGCTGTTGTGTGACGCT 60.815 50.000 0.00 0.00 0.00 5.07
3705 3891 0.385098 CATGCTGTTGTGTGACGCTG 60.385 55.000 0.00 0.00 0.00 5.18
3706 3892 0.815213 ATGCTGTTGTGTGACGCTGT 60.815 50.000 0.00 0.00 0.00 4.40
3707 3893 1.276844 GCTGTTGTGTGACGCTGTC 59.723 57.895 0.00 2.32 0.00 3.51
3708 3894 1.154205 GCTGTTGTGTGACGCTGTCT 61.154 55.000 9.49 0.00 33.15 3.41
3709 3895 1.868109 GCTGTTGTGTGACGCTGTCTA 60.868 52.381 9.49 0.00 33.15 2.59
3710 3896 2.677199 CTGTTGTGTGACGCTGTCTAT 58.323 47.619 9.49 0.00 33.15 1.98
3711 3897 3.833442 CTGTTGTGTGACGCTGTCTATA 58.167 45.455 9.49 0.00 33.15 1.31
3712 3898 4.424626 CTGTTGTGTGACGCTGTCTATAT 58.575 43.478 9.49 0.00 33.15 0.86
3713 3899 4.816392 TGTTGTGTGACGCTGTCTATATT 58.184 39.130 9.49 0.00 33.15 1.28
3714 3900 5.234752 TGTTGTGTGACGCTGTCTATATTT 58.765 37.500 9.49 0.00 33.15 1.40
3715 3901 5.699001 TGTTGTGTGACGCTGTCTATATTTT 59.301 36.000 9.49 0.00 33.15 1.82
3716 3902 6.869388 TGTTGTGTGACGCTGTCTATATTTTA 59.131 34.615 9.49 0.00 33.15 1.52
3717 3903 7.547722 TGTTGTGTGACGCTGTCTATATTTTAT 59.452 33.333 9.49 0.00 33.15 1.40
3718 3904 8.388103 GTTGTGTGACGCTGTCTATATTTTATT 58.612 33.333 9.49 0.00 33.15 1.40
3719 3905 9.589111 TTGTGTGACGCTGTCTATATTTTATTA 57.411 29.630 9.49 0.00 33.15 0.98
3720 3906 9.589111 TGTGTGACGCTGTCTATATTTTATTAA 57.411 29.630 9.49 0.00 33.15 1.40
3756 3977 8.112183 AGTAATGACTTCATCTGGAATCCTTTT 58.888 33.333 0.00 0.00 35.10 2.27
3850 4072 9.838339 ATATCTGAAAGGTCCAAACAGTATTAG 57.162 33.333 0.00 0.00 0.00 1.73
3880 4102 4.702131 ACCAGAAGAACACCAATTGCTATC 59.298 41.667 0.00 0.00 0.00 2.08
3992 4215 5.661056 AGTTAGTGCTGCTGTAGACATAA 57.339 39.130 0.00 0.00 0.00 1.90
3995 4218 7.782049 AGTTAGTGCTGCTGTAGACATAATAA 58.218 34.615 0.00 0.00 0.00 1.40
4178 4404 3.303725 GCAACAATAAAGACGTCAGCACA 60.304 43.478 19.50 0.00 0.00 4.57
4189 4415 1.134995 CGTCAGCACATAAGAGGCTCA 60.135 52.381 18.26 0.00 35.27 4.26
4228 4454 6.990349 TGATAGTGTACATGACTCACTCGATA 59.010 38.462 19.02 8.12 41.66 2.92
4499 4725 2.919971 GTGAGTTCCACAGTGCCTC 58.080 57.895 0.00 0.88 45.03 4.70
4500 4726 0.603975 GTGAGTTCCACAGTGCCTCC 60.604 60.000 0.00 0.00 45.03 4.30
4501 4727 0.764369 TGAGTTCCACAGTGCCTCCT 60.764 55.000 0.00 0.00 0.00 3.69
4502 4728 0.036858 GAGTTCCACAGTGCCTCCTC 60.037 60.000 0.00 0.00 0.00 3.71
4503 4729 0.764369 AGTTCCACAGTGCCTCCTCA 60.764 55.000 0.00 0.00 0.00 3.86
4504 4730 0.326264 GTTCCACAGTGCCTCCTCAT 59.674 55.000 0.00 0.00 0.00 2.90
4505 4731 1.067295 TTCCACAGTGCCTCCTCATT 58.933 50.000 0.00 0.00 0.00 2.57
4506 4732 1.067295 TCCACAGTGCCTCCTCATTT 58.933 50.000 0.00 0.00 0.00 2.32
4507 4733 1.425066 TCCACAGTGCCTCCTCATTTT 59.575 47.619 0.00 0.00 0.00 1.82
4508 4734 1.542915 CCACAGTGCCTCCTCATTTTG 59.457 52.381 0.00 0.00 0.00 2.44
4509 4735 1.068055 CACAGTGCCTCCTCATTTTGC 60.068 52.381 0.00 0.00 0.00 3.68
4510 4736 0.529378 CAGTGCCTCCTCATTTTGCC 59.471 55.000 0.00 0.00 0.00 4.52
4511 4737 0.407139 AGTGCCTCCTCATTTTGCCT 59.593 50.000 0.00 0.00 0.00 4.75
4512 4738 0.529378 GTGCCTCCTCATTTTGCCTG 59.471 55.000 0.00 0.00 0.00 4.85
4513 4739 0.112995 TGCCTCCTCATTTTGCCTGT 59.887 50.000 0.00 0.00 0.00 4.00
4514 4740 1.354031 TGCCTCCTCATTTTGCCTGTA 59.646 47.619 0.00 0.00 0.00 2.74
4515 4741 2.224992 TGCCTCCTCATTTTGCCTGTAA 60.225 45.455 0.00 0.00 0.00 2.41
4516 4742 3.026694 GCCTCCTCATTTTGCCTGTAAT 58.973 45.455 0.00 0.00 0.00 1.89
4517 4743 3.067320 GCCTCCTCATTTTGCCTGTAATC 59.933 47.826 0.00 0.00 0.00 1.75
4518 4744 3.633986 CCTCCTCATTTTGCCTGTAATCC 59.366 47.826 0.00 0.00 0.00 3.01
4519 4745 4.530875 CTCCTCATTTTGCCTGTAATCCT 58.469 43.478 0.00 0.00 0.00 3.24
4520 4746 5.397899 CCTCCTCATTTTGCCTGTAATCCTA 60.398 44.000 0.00 0.00 0.00 2.94
4521 4747 5.437060 TCCTCATTTTGCCTGTAATCCTAC 58.563 41.667 0.00 0.00 0.00 3.18
4522 4748 4.580580 CCTCATTTTGCCTGTAATCCTACC 59.419 45.833 0.00 0.00 0.00 3.18
4523 4749 5.440610 CTCATTTTGCCTGTAATCCTACCT 58.559 41.667 0.00 0.00 0.00 3.08
4524 4750 5.437060 TCATTTTGCCTGTAATCCTACCTC 58.563 41.667 0.00 0.00 0.00 3.85
4525 4751 5.191722 TCATTTTGCCTGTAATCCTACCTCT 59.808 40.000 0.00 0.00 0.00 3.69
4526 4752 5.514500 TTTTGCCTGTAATCCTACCTCTT 57.486 39.130 0.00 0.00 0.00 2.85
4527 4753 6.630203 TTTTGCCTGTAATCCTACCTCTTA 57.370 37.500 0.00 0.00 0.00 2.10
4528 4754 5.871396 TTGCCTGTAATCCTACCTCTTAG 57.129 43.478 0.00 0.00 0.00 2.18
4546 4772 6.742559 TCTTAGGAGGTTGTAACAAACTCT 57.257 37.500 17.14 7.22 0.00 3.24
4547 4773 6.756221 TCTTAGGAGGTTGTAACAAACTCTC 58.244 40.000 17.14 13.74 31.74 3.20
4548 4774 6.553852 TCTTAGGAGGTTGTAACAAACTCTCT 59.446 38.462 17.14 14.99 32.48 3.10
4549 4775 5.632034 AGGAGGTTGTAACAAACTCTCTT 57.368 39.130 17.14 9.49 32.48 2.85
4550 4776 5.612351 AGGAGGTTGTAACAAACTCTCTTC 58.388 41.667 17.14 0.90 32.48 2.87
4551 4777 4.755629 GGAGGTTGTAACAAACTCTCTTCC 59.244 45.833 17.14 7.69 32.48 3.46
4552 4778 5.454897 GGAGGTTGTAACAAACTCTCTTCCT 60.455 44.000 17.14 0.00 32.48 3.36
4553 4779 6.002653 AGGTTGTAACAAACTCTCTTCCTT 57.997 37.500 0.00 0.00 0.00 3.36
4554 4780 6.424032 AGGTTGTAACAAACTCTCTTCCTTT 58.576 36.000 0.00 0.00 0.00 3.11
4555 4781 6.890268 AGGTTGTAACAAACTCTCTTCCTTTT 59.110 34.615 0.00 0.00 0.00 2.27
4556 4782 7.067129 AGGTTGTAACAAACTCTCTTCCTTTTC 59.933 37.037 0.00 0.00 0.00 2.29
4557 4783 7.148137 GGTTGTAACAAACTCTCTTCCTTTTCA 60.148 37.037 0.00 0.00 0.00 2.69
4558 4784 7.553881 TGTAACAAACTCTCTTCCTTTTCAG 57.446 36.000 0.00 0.00 0.00 3.02
4559 4785 7.110155 TGTAACAAACTCTCTTCCTTTTCAGT 58.890 34.615 0.00 0.00 0.00 3.41
4560 4786 8.262227 TGTAACAAACTCTCTTCCTTTTCAGTA 58.738 33.333 0.00 0.00 0.00 2.74
4561 4787 9.274206 GTAACAAACTCTCTTCCTTTTCAGTAT 57.726 33.333 0.00 0.00 0.00 2.12
4563 4789 9.847224 AACAAACTCTCTTCCTTTTCAGTATAA 57.153 29.630 0.00 0.00 0.00 0.98
4572 4798 9.567776 TCTTCCTTTTCAGTATAATGAAACACA 57.432 29.630 23.84 11.73 46.12 3.72
4592 4818 4.168792 CAAAAGTCTTTTGCGTTTGCTC 57.831 40.909 21.85 0.00 42.91 4.26
4593 4819 3.502191 AAAGTCTTTTGCGTTTGCTCA 57.498 38.095 0.00 0.00 43.34 4.26
4594 4820 3.502191 AAGTCTTTTGCGTTTGCTCAA 57.498 38.095 0.00 0.00 43.34 3.02
4595 4821 3.502191 AGTCTTTTGCGTTTGCTCAAA 57.498 38.095 0.00 0.00 43.34 2.69
4596 4822 3.179048 AGTCTTTTGCGTTTGCTCAAAC 58.821 40.909 13.80 13.80 45.25 2.93
4597 4823 9.603637 CAAAAGTCTTTTGCGTTTGCTCAAACA 62.604 37.037 21.85 4.43 44.25 2.83
4710 4936 6.782988 TGTTCCAATACCTTTTATGGGTTGAA 59.217 34.615 0.00 0.00 38.19 2.69
4730 4959 8.092687 GGTTGAATAGTAAGTCAAGTCCAAGTA 58.907 37.037 0.99 0.00 40.13 2.24
4738 4967 5.662674 AGTCAAGTCCAAGTAGATACACC 57.337 43.478 0.00 0.00 0.00 4.16
4758 4987 4.035208 CACCGGGTACTTCTCATATTTTGC 59.965 45.833 6.32 0.00 0.00 3.68
4871 5100 3.764972 GGAGTGAGCCTTAGTGTTCTAGT 59.235 47.826 0.00 0.00 0.00 2.57
4927 5156 5.684704 ACCTGATGGATAATTATATGCCCG 58.315 41.667 0.00 0.00 37.04 6.13
4978 5207 7.564660 TGTACTCCCTCCGTTCCTAAATATAAA 59.435 37.037 0.00 0.00 0.00 1.40
4979 5208 7.628501 ACTCCCTCCGTTCCTAAATATAAAT 57.371 36.000 0.00 0.00 0.00 1.40
4983 5212 8.373220 TCCCTCCGTTCCTAAATATAAATCTTC 58.627 37.037 0.00 0.00 0.00 2.87
5034 5263 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
5120 5409 3.875125 AGAAAATAGAAACGGAGGGAGC 58.125 45.455 0.00 0.00 0.00 4.70
5157 5446 4.893608 TGCAGCAGAACTATAACAACAGA 58.106 39.130 0.00 0.00 0.00 3.41
5209 5498 5.681543 GCAAAAGCAGTAAACAGTAGTTCAC 59.318 40.000 0.00 0.00 36.84 3.18
5574 5866 4.883006 ACTTGCATCAACTTTTTGCCAATT 59.117 33.333 0.00 0.00 35.51 2.32
5576 5868 3.003482 TGCATCAACTTTTTGCCAATTGC 59.997 39.130 0.00 0.00 41.77 3.56
5687 5979 8.398665 GTCTTAATTACCCAGAAAGCTGTATTG 58.601 37.037 0.00 0.00 40.63 1.90
5732 6024 6.461231 GGGTCGTCTGTACTTTGATAGCTAAT 60.461 42.308 0.00 0.00 0.00 1.73
5873 6169 6.479884 AGGCCATAGACATAATTCTGAATCC 58.520 40.000 5.01 0.00 0.00 3.01
5887 6183 2.421424 CTGAATCCGCCTCCTCAAAAAG 59.579 50.000 0.00 0.00 0.00 2.27
5918 6214 6.072119 CCAGTTTTACCAGGAATTCAGTAACC 60.072 42.308 7.93 5.69 0.00 2.85
5928 6224 5.654650 AGGAATTCAGTAACCAACAACACAA 59.345 36.000 7.93 0.00 0.00 3.33
5967 6265 0.687920 TTGGGGAAGCGATGTACACA 59.312 50.000 0.00 0.00 0.00 3.72
6027 6325 9.836076 GGTAGTTTTGTGAAGTGAAATAATACC 57.164 33.333 0.00 0.00 0.00 2.73
6038 6336 6.426587 AGTGAAATAATACCTGGATGTGCTT 58.573 36.000 0.00 0.00 0.00 3.91
6040 6338 7.397192 AGTGAAATAATACCTGGATGTGCTTTT 59.603 33.333 0.00 0.00 0.00 2.27
6041 6339 7.489113 GTGAAATAATACCTGGATGTGCTTTTG 59.511 37.037 0.00 0.00 0.00 2.44
6047 6345 3.450457 ACCTGGATGTGCTTTTGAAAACA 59.550 39.130 0.00 0.00 0.00 2.83
6189 6487 6.849085 TTGTCACCCATTTAGCATTTATGT 57.151 33.333 0.00 0.00 0.00 2.29
6214 6512 5.534654 ACTGGATTTGAGTGAAAATCGGAAA 59.465 36.000 4.16 0.00 44.20 3.13
6586 6884 1.699656 CCTTCATGGTCTTCAGCGCG 61.700 60.000 0.00 0.00 0.00 6.86
6671 6970 3.634397 TCAGATGGGGTTCACTGAATC 57.366 47.619 0.00 0.00 36.63 2.52
6692 6991 2.290896 CCTCAGGTATTCAGGTTTGGCA 60.291 50.000 0.00 0.00 0.00 4.92
6767 7074 1.205893 GTTGGAGTCTCTGGTAGCTGG 59.794 57.143 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.684550 AGAAAAGAATAGGCGTTTTTCGT 57.315 34.783 7.86 0.00 41.81 3.85
79 89 2.564975 CACGGCCGTAACTCTCGT 59.435 61.111 33.70 0.61 34.19 4.18
293 330 0.599204 GGCCACGACTCTCACGAAAA 60.599 55.000 0.00 0.00 34.70 2.29
299 336 2.265739 GCATGGCCACGACTCTCA 59.734 61.111 8.16 0.00 0.00 3.27
363 404 2.489722 GGAAGCAAAACCATGACTCTCC 59.510 50.000 0.00 0.00 0.00 3.71
416 457 3.066190 CCAGGAGGCACGGTCGTA 61.066 66.667 0.00 0.00 0.00 3.43
420 461 2.852075 TTTCCCAGGAGGCACGGT 60.852 61.111 0.00 0.00 34.51 4.83
485 529 2.742053 GTCTCTCGCAATAGCAAAACCA 59.258 45.455 0.00 0.00 42.27 3.67
495 539 0.033504 ACAACCGTGTCTCTCGCAAT 59.966 50.000 0.00 0.00 29.49 3.56
497 541 1.299850 CACAACCGTGTCTCTCGCA 60.300 57.895 0.00 0.00 38.41 5.10
505 549 2.102420 TCTCACAGAATCACAACCGTGT 59.898 45.455 0.00 0.00 44.02 4.49
519 563 0.799917 CACGATCGTGCCTCTCACAG 60.800 60.000 32.93 7.88 45.92 3.66
561 609 3.287867 AAACTGAATCGGGAGCATCAT 57.712 42.857 0.00 0.00 36.25 2.45
645 697 4.236935 CCGTTTTCACCATTGGATTTCTG 58.763 43.478 10.37 0.00 0.00 3.02
676 728 3.627395 TCTCTTAAACCATGCGTCCAT 57.373 42.857 0.00 0.00 0.00 3.41
739 799 1.198408 CATGTGCTCACTTGTCGCAAT 59.802 47.619 7.49 0.00 35.16 3.56
795 856 3.006537 CGAGGAGTACTCACCCTCAAAAA 59.993 47.826 23.91 0.00 46.98 1.94
796 857 2.561419 CGAGGAGTACTCACCCTCAAAA 59.439 50.000 23.91 0.00 46.98 2.44
797 858 2.168496 CGAGGAGTACTCACCCTCAAA 58.832 52.381 23.91 0.00 46.98 2.69
798 859 1.353358 TCGAGGAGTACTCACCCTCAA 59.647 52.381 23.91 5.46 46.98 3.02
799 860 0.989602 TCGAGGAGTACTCACCCTCA 59.010 55.000 23.91 10.18 46.98 3.86
800 861 2.351706 ATCGAGGAGTACTCACCCTC 57.648 55.000 23.91 19.49 46.98 4.30
801 862 2.025226 TCAATCGAGGAGTACTCACCCT 60.025 50.000 23.91 13.04 46.98 4.34
802 863 2.376109 TCAATCGAGGAGTACTCACCC 58.624 52.381 23.91 8.09 46.98 4.61
803 864 3.632604 TCATCAATCGAGGAGTACTCACC 59.367 47.826 23.91 13.36 46.98 4.02
804 865 4.902443 TCATCAATCGAGGAGTACTCAC 57.098 45.455 23.91 15.48 46.98 3.51
805 866 6.276091 CAAATCATCAATCGAGGAGTACTCA 58.724 40.000 23.91 4.10 46.98 3.41
806 867 5.694006 CCAAATCATCAATCGAGGAGTACTC 59.306 44.000 14.87 14.87 43.02 2.59
807 868 5.129485 ACCAAATCATCAATCGAGGAGTACT 59.871 40.000 0.00 0.00 34.99 2.73
808 869 5.235186 CACCAAATCATCAATCGAGGAGTAC 59.765 44.000 0.00 0.00 34.99 2.73
809 870 5.128663 TCACCAAATCATCAATCGAGGAGTA 59.871 40.000 0.00 0.00 34.99 2.59
810 871 4.080919 TCACCAAATCATCAATCGAGGAGT 60.081 41.667 0.00 0.00 34.99 3.85
811 872 4.445453 TCACCAAATCATCAATCGAGGAG 58.555 43.478 0.00 0.00 34.99 3.69
812 873 4.486125 TCACCAAATCATCAATCGAGGA 57.514 40.909 0.00 0.00 36.18 3.71
813 874 4.214971 GGATCACCAAATCATCAATCGAGG 59.785 45.833 0.00 0.00 35.97 4.63
814 875 4.818005 TGGATCACCAAATCATCAATCGAG 59.182 41.667 0.00 0.00 43.91 4.04
815 876 4.779696 TGGATCACCAAATCATCAATCGA 58.220 39.130 0.00 0.00 43.91 3.59
830 891 5.514274 TTTTCTCTTTTGTGGTGGATCAC 57.486 39.130 0.00 0.00 38.09 3.06
858 919 1.539388 TGCGCTCGAATGGAAAATGTT 59.461 42.857 9.73 0.00 0.00 2.71
872 933 2.669569 TGGGCTGAAGTTGCGCTC 60.670 61.111 9.73 1.40 42.68 5.03
873 934 2.980233 GTGGGCTGAAGTTGCGCT 60.980 61.111 9.73 0.00 42.68 5.92
879 941 1.065126 GCCTAAGATGTGGGCTGAAGT 60.065 52.381 0.00 0.00 42.31 3.01
937 999 0.034863 GCCGGTAGGTTTGGAATGGA 60.035 55.000 1.90 0.00 40.50 3.41
940 1002 1.747745 GCGCCGGTAGGTTTGGAAT 60.748 57.895 1.90 0.00 40.50 3.01
1049 1147 1.149782 AGGTGGAGAGTGGAGGAGGA 61.150 60.000 0.00 0.00 0.00 3.71
1289 1387 1.099879 CAGCAGGAGCCATAACAGCC 61.100 60.000 0.00 0.00 43.56 4.85
1290 1388 1.722636 GCAGCAGGAGCCATAACAGC 61.723 60.000 0.00 0.00 43.56 4.40
1321 1419 3.410631 TTCTCCCACAAATTCGCTACA 57.589 42.857 0.00 0.00 0.00 2.74
1345 1443 1.758440 AACTGCTCCGTCTGCCAAGA 61.758 55.000 0.00 0.00 0.00 3.02
1400 1498 2.642995 CATTTGCACGATCGCTAATGG 58.357 47.619 16.60 0.00 45.41 3.16
1562 1660 8.958060 AATCTATAACAGAATAGGCTACTGGA 57.042 34.615 14.49 4.87 36.67 3.86
1591 1689 7.370836 CGATCGATCAAACACTAAAATACTTGC 59.629 37.037 24.40 0.00 0.00 4.01
1605 1703 1.999735 TGTCAAGCCGATCGATCAAAC 59.000 47.619 24.40 12.84 0.00 2.93
1644 1742 9.185680 ACTGTAGAAAACAACTCCAAAAGTAAT 57.814 29.630 0.00 0.00 37.17 1.89
1723 1830 5.422970 AGATGCCAATGAAAATGTACACCAT 59.577 36.000 0.00 0.00 34.36 3.55
1737 1844 1.961394 CCCAGGATCAAGATGCCAATG 59.039 52.381 0.00 0.00 0.00 2.82
1820 1932 3.414269 TCTCAAGTCAATGCAAGCATCA 58.586 40.909 8.14 0.00 35.31 3.07
1861 1973 7.439157 TCTCTGTATCACATTTCCAAGTTTG 57.561 36.000 0.00 0.00 0.00 2.93
1978 2091 5.047802 CCTGATAAATGCGGCCTTGATTTAT 60.048 40.000 17.12 17.12 35.78 1.40
2129 2242 4.631377 TGCGATTTTATCACCTGAACAGAG 59.369 41.667 3.19 0.00 0.00 3.35
2221 2334 1.812235 TGCAGAGTTATGTGGTGCAG 58.188 50.000 0.00 0.00 39.17 4.41
2230 2343 5.819379 CACCATGTGAAGTATGCAGAGTTAT 59.181 40.000 0.42 0.00 35.23 1.89
2252 2365 2.162681 AGACCAACATTAGCTTGCCAC 58.837 47.619 0.00 0.00 0.00 5.01
2313 2426 4.143543 TGAGAGCATTTTGTGTGATTGGA 58.856 39.130 0.00 0.00 0.00 3.53
2374 2493 8.665643 TTCCTAAGTTATCTTTTCGTTGTTGA 57.334 30.769 0.00 0.00 35.36 3.18
2524 2652 6.425721 CCACCTGAACTTAGTTTCGTCATTTA 59.574 38.462 0.00 0.00 0.00 1.40
2561 2690 6.049149 GCTCCAGTTAAGTCAAGCACATATA 58.951 40.000 8.06 0.00 0.00 0.86
2735 2864 6.128138 ACTTAGTCCTAGAATGCCTTTGTT 57.872 37.500 0.00 0.00 0.00 2.83
2763 2907 6.402226 GGAAACCAGACTAAAACATAGAAGCG 60.402 42.308 0.00 0.00 0.00 4.68
2938 3085 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
2939 3086 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
2940 3087 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
2941 3088 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
2942 3089 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
2943 3090 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
2944 3091 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
2945 3092 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
2946 3093 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
2947 3094 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
2948 3095 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2949 3096 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2950 3097 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2951 3098 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2952 3099 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2953 3100 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2954 3101 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2955 3102 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
2956 3103 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
2957 3104 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
2958 3105 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
2959 3106 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
2960 3107 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
2961 3108 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
2971 3118 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
2972 3119 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
2973 3120 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
2974 3121 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
2975 3122 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
2976 3123 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2977 3124 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2978 3125 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2979 3126 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2980 3127 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2981 3128 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2982 3129 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2983 3130 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
2984 3131 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
2985 3132 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
2986 3133 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
2987 3134 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
2988 3135 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
2989 3136 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
2990 3137 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
2991 3138 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
2992 3139 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
2993 3140 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
2994 3141 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
2995 3142 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
2996 3143 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
2997 3144 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
3007 3154 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3008 3155 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3009 3156 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3010 3157 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3011 3158 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3012 3159 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3013 3160 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3014 3161 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3015 3162 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
3016 3163 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3017 3164 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3018 3165 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3019 3166 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3020 3167 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3021 3168 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3022 3169 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3023 3170 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
3024 3171 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
3025 3172 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
3037 3184 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3040 3187 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3041 3188 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3042 3189 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3043 3190 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3045 3192 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
3046 3193 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
3047 3194 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
3048 3195 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
3049 3196 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
3050 3197 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
3051 3198 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
3052 3199 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
3053 3200 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
3064 3211 0.178953 ATGTATGATTGGGGCAGCCC 60.179 55.000 24.23 24.23 44.51 5.19
3065 3212 0.963962 CATGTATGATTGGGGCAGCC 59.036 55.000 1.26 1.26 0.00 4.85
3066 3213 1.610522 GACATGTATGATTGGGGCAGC 59.389 52.381 0.00 0.00 0.00 5.25
3067 3214 3.144506 GAGACATGTATGATTGGGGCAG 58.855 50.000 0.00 0.00 0.00 4.85
3068 3215 2.509131 TGAGACATGTATGATTGGGGCA 59.491 45.455 0.00 0.00 0.00 5.36
3069 3216 3.213206 TGAGACATGTATGATTGGGGC 57.787 47.619 0.00 0.00 0.00 5.80
3070 3217 6.537355 AGTATTGAGACATGTATGATTGGGG 58.463 40.000 0.00 0.00 0.00 4.96
3071 3218 6.367149 CGAGTATTGAGACATGTATGATTGGG 59.633 42.308 0.00 0.00 0.00 4.12
3072 3219 7.147976 TCGAGTATTGAGACATGTATGATTGG 58.852 38.462 0.00 0.00 0.00 3.16
3108 3255 1.414919 TGTTTGGTACCTTCAGAGCGT 59.585 47.619 14.36 0.00 0.00 5.07
3280 3466 6.746822 TGCATTTATGAGCAAAACTAATGTCG 59.253 34.615 0.00 0.00 37.90 4.35
3412 3598 2.027100 AGAAAGTTGGGTAGCCACTAGC 60.027 50.000 14.60 9.56 44.25 3.42
3413 3599 3.983044 AGAAAGTTGGGTAGCCACTAG 57.017 47.619 14.60 0.00 0.00 2.57
3414 3600 3.008704 GGAAGAAAGTTGGGTAGCCACTA 59.991 47.826 14.60 0.00 0.00 2.74
3415 3601 2.224793 GGAAGAAAGTTGGGTAGCCACT 60.225 50.000 14.60 11.43 0.00 4.00
3416 3602 2.160205 GGAAGAAAGTTGGGTAGCCAC 58.840 52.381 14.60 9.20 0.00 5.01
3515 3701 2.729360 TGAACACGACTGTATGCTTTCG 59.271 45.455 0.00 3.73 37.50 3.46
3522 3708 7.987458 AGATTTCCATTATGAACACGACTGTAT 59.013 33.333 0.00 0.00 0.00 2.29
3631 3817 2.505407 AGCATACTCCATAAGTGCCACA 59.495 45.455 0.00 0.00 39.11 4.17
3687 3873 0.815213 ACAGCGTCACACAACAGCAT 60.815 50.000 0.00 0.00 0.00 3.79
3688 3874 1.428370 GACAGCGTCACACAACAGCA 61.428 55.000 4.20 0.00 32.09 4.41
3689 3875 1.154205 AGACAGCGTCACACAACAGC 61.154 55.000 10.52 0.00 34.60 4.40
3690 3876 2.134201 TAGACAGCGTCACACAACAG 57.866 50.000 10.52 0.00 34.60 3.16
3691 3877 2.812358 ATAGACAGCGTCACACAACA 57.188 45.000 10.52 0.00 34.60 3.33
3692 3878 5.779806 AAATATAGACAGCGTCACACAAC 57.220 39.130 10.52 0.00 34.60 3.32
3693 3879 8.487313 AATAAAATATAGACAGCGTCACACAA 57.513 30.769 10.52 0.00 34.60 3.33
3694 3880 9.589111 TTAATAAAATATAGACAGCGTCACACA 57.411 29.630 10.52 0.00 34.60 3.72
3721 3907 8.588472 CCAGATGAAGTCATTACTACATGGATA 58.412 37.037 0.00 0.00 36.57 2.59
3797 4019 3.305897 CGTTTTTGCCAAACAGTTCCTTC 59.694 43.478 8.79 0.00 0.00 3.46
3850 4072 3.013921 TGGTGTTCTTCTGGTTGTCAAC 58.986 45.455 7.20 7.20 0.00 3.18
3947 4170 5.651387 TGCATATATGAGAGCTACAGGAC 57.349 43.478 17.10 0.00 0.00 3.85
3948 4171 5.777223 ACTTGCATATATGAGAGCTACAGGA 59.223 40.000 17.10 0.00 0.00 3.86
3995 4218 9.295825 TGTCCACTGTGATCATTTAAAAGTAAT 57.704 29.630 9.86 0.00 0.00 1.89
4178 4404 3.030291 CAGGAGTGAGTGAGCCTCTTAT 58.970 50.000 0.00 0.00 41.11 1.73
4189 4415 2.495270 CACTATCAGTGCAGGAGTGAGT 59.505 50.000 5.60 0.00 39.62 3.41
4221 4447 7.459795 TGAGCAGAAGATATCAATATCGAGT 57.540 36.000 5.32 0.00 43.01 4.18
4228 4454 8.515695 TTTGACAATGAGCAGAAGATATCAAT 57.484 30.769 5.32 0.00 0.00 2.57
4382 4608 1.135315 CAACGCTCGGCCATCAAAG 59.865 57.895 2.24 0.00 0.00 2.77
4488 4714 1.542915 CAAAATGAGGAGGCACTGTGG 59.457 52.381 10.21 0.00 41.55 4.17
4489 4715 1.068055 GCAAAATGAGGAGGCACTGTG 60.068 52.381 2.76 2.76 41.55 3.66
4490 4716 1.251251 GCAAAATGAGGAGGCACTGT 58.749 50.000 0.00 0.00 41.55 3.55
4491 4717 0.529378 GGCAAAATGAGGAGGCACTG 59.471 55.000 0.00 0.00 41.55 3.66
4493 4719 0.529378 CAGGCAAAATGAGGAGGCAC 59.471 55.000 0.00 0.00 0.00 5.01
4494 4720 0.112995 ACAGGCAAAATGAGGAGGCA 59.887 50.000 0.00 0.00 0.00 4.75
4495 4721 2.128771 TACAGGCAAAATGAGGAGGC 57.871 50.000 0.00 0.00 0.00 4.70
4496 4722 3.633986 GGATTACAGGCAAAATGAGGAGG 59.366 47.826 0.00 0.00 0.00 4.30
4497 4723 4.530875 AGGATTACAGGCAAAATGAGGAG 58.469 43.478 0.00 0.00 0.00 3.69
4498 4724 4.591321 AGGATTACAGGCAAAATGAGGA 57.409 40.909 0.00 0.00 0.00 3.71
4499 4725 4.580580 GGTAGGATTACAGGCAAAATGAGG 59.419 45.833 0.00 0.00 0.00 3.86
4500 4726 5.440610 AGGTAGGATTACAGGCAAAATGAG 58.559 41.667 0.00 0.00 0.00 2.90
4501 4727 5.191722 AGAGGTAGGATTACAGGCAAAATGA 59.808 40.000 0.00 0.00 0.00 2.57
4502 4728 5.440610 AGAGGTAGGATTACAGGCAAAATG 58.559 41.667 0.00 0.00 0.00 2.32
4503 4729 5.717119 AGAGGTAGGATTACAGGCAAAAT 57.283 39.130 0.00 0.00 0.00 1.82
4504 4730 5.514500 AAGAGGTAGGATTACAGGCAAAA 57.486 39.130 0.00 0.00 0.00 2.44
4505 4731 6.235231 CTAAGAGGTAGGATTACAGGCAAA 57.765 41.667 0.00 0.00 0.00 3.68
4506 4732 5.871396 CTAAGAGGTAGGATTACAGGCAA 57.129 43.478 0.00 0.00 0.00 4.52
4522 4748 6.760291 AGAGTTTGTTACAACCTCCTAAGAG 58.240 40.000 17.01 0.00 40.09 2.85
4523 4749 6.553852 AGAGAGTTTGTTACAACCTCCTAAGA 59.446 38.462 17.01 0.00 0.00 2.10
4524 4750 6.760291 AGAGAGTTTGTTACAACCTCCTAAG 58.240 40.000 17.01 0.00 0.00 2.18
4525 4751 6.742559 AGAGAGTTTGTTACAACCTCCTAA 57.257 37.500 17.01 0.00 0.00 2.69
4526 4752 6.239515 GGAAGAGAGTTTGTTACAACCTCCTA 60.240 42.308 17.01 0.00 0.00 2.94
4527 4753 5.454897 GGAAGAGAGTTTGTTACAACCTCCT 60.455 44.000 17.01 11.75 0.00 3.69
4528 4754 4.755629 GGAAGAGAGTTTGTTACAACCTCC 59.244 45.833 17.01 9.99 0.00 4.30
4529 4755 5.612351 AGGAAGAGAGTTTGTTACAACCTC 58.388 41.667 13.62 13.62 0.00 3.85
4530 4756 5.632034 AGGAAGAGAGTTTGTTACAACCT 57.368 39.130 0.00 0.00 0.00 3.50
4531 4757 6.694877 AAAGGAAGAGAGTTTGTTACAACC 57.305 37.500 0.00 0.00 0.00 3.77
4532 4758 7.758495 TGAAAAGGAAGAGAGTTTGTTACAAC 58.242 34.615 0.00 0.00 0.00 3.32
4533 4759 7.610305 ACTGAAAAGGAAGAGAGTTTGTTACAA 59.390 33.333 0.00 0.00 0.00 2.41
4534 4760 7.110155 ACTGAAAAGGAAGAGAGTTTGTTACA 58.890 34.615 0.00 0.00 0.00 2.41
4535 4761 7.555306 ACTGAAAAGGAAGAGAGTTTGTTAC 57.445 36.000 0.00 0.00 0.00 2.50
4537 4763 9.847224 TTATACTGAAAAGGAAGAGAGTTTGTT 57.153 29.630 0.00 0.00 0.00 2.83
4546 4772 9.567776 TGTGTTTCATTATACTGAAAAGGAAGA 57.432 29.630 17.04 3.43 44.38 2.87
4570 4796 9.604775 GTTTGAGCAAACGCAAAAGACTTTTGT 62.605 37.037 31.29 16.90 45.35 2.83
4571 4797 7.362731 GTTTGAGCAAACGCAAAAGACTTTTG 61.363 38.462 28.69 28.69 45.35 2.44
4572 4798 3.843999 TGAGCAAACGCAAAAGACTTTT 58.156 36.364 7.38 7.38 0.00 2.27
4573 4799 3.502191 TGAGCAAACGCAAAAGACTTT 57.498 38.095 0.00 0.00 0.00 2.66
4574 4800 3.502191 TTGAGCAAACGCAAAAGACTT 57.498 38.095 0.00 0.00 32.24 3.01
4575 4801 3.179048 GTTTGAGCAAACGCAAAAGACT 58.821 40.909 9.98 0.00 45.35 3.24
4576 4802 3.553053 GTTTGAGCAAACGCAAAAGAC 57.447 42.857 9.98 0.00 45.35 3.01
4710 4936 9.696572 TGTATCTACTTGGACTTGACTTACTAT 57.303 33.333 0.00 0.00 0.00 2.12
4730 4959 3.377253 TGAGAAGTACCCGGTGTATCT 57.623 47.619 0.00 3.50 0.00 1.98
4738 4967 3.247648 CCGCAAAATATGAGAAGTACCCG 59.752 47.826 0.00 0.00 0.00 5.28
4758 4987 0.462047 AGGGTGCTTATTTCGAGCCG 60.462 55.000 0.00 0.00 39.38 5.52
4871 5100 9.685276 ACTCCAGACAAAAATATCACATTATGA 57.315 29.630 0.00 0.00 43.13 2.15
4884 5113 5.530915 CAGGTATGTTCACTCCAGACAAAAA 59.469 40.000 0.00 0.00 0.00 1.94
4927 5156 9.237846 CACAATTAACTTTCAAGTTTCTTCTCC 57.762 33.333 10.15 0.00 46.52 3.71
5099 5388 3.263425 TGCTCCCTCCGTTTCTATTTTCT 59.737 43.478 0.00 0.00 0.00 2.52
5104 5393 1.867363 ACTGCTCCCTCCGTTTCTAT 58.133 50.000 0.00 0.00 0.00 1.98
5105 5394 1.640917 AACTGCTCCCTCCGTTTCTA 58.359 50.000 0.00 0.00 0.00 2.10
5106 5395 1.640917 TAACTGCTCCCTCCGTTTCT 58.359 50.000 0.00 0.00 0.00 2.52
5107 5396 2.093658 TCATAACTGCTCCCTCCGTTTC 60.094 50.000 0.00 0.00 0.00 2.78
5108 5397 1.906574 TCATAACTGCTCCCTCCGTTT 59.093 47.619 0.00 0.00 0.00 3.60
5109 5398 1.482593 CTCATAACTGCTCCCTCCGTT 59.517 52.381 0.00 0.00 0.00 4.44
5110 5399 1.115467 CTCATAACTGCTCCCTCCGT 58.885 55.000 0.00 0.00 0.00 4.69
5120 5409 4.872124 TCTGCTGCATGTAACTCATAACTG 59.128 41.667 1.31 0.00 34.67 3.16
5391 5680 9.631452 GTAAATATACTCTACGAAATGGTACCC 57.369 37.037 10.07 0.00 0.00 3.69
5661 5953 8.398665 CAATACAGCTTTCTGGGTAATTAAGAC 58.601 37.037 0.00 0.00 44.54 3.01
5687 5979 2.512885 CGCAGCATTCATGTTCAGAAC 58.487 47.619 6.32 6.32 0.00 3.01
5732 6024 9.364989 CAGTTCCAGTGAATTTTTACAAAGAAA 57.635 29.630 0.00 0.00 31.98 2.52
5887 6183 1.005450 TCCTGGTAAAACTGGATGCCC 59.995 52.381 0.00 0.00 34.09 5.36
5967 6265 6.006275 AGGGCAATACATCTTAATGTCAGT 57.994 37.500 0.00 0.00 42.59 3.41
6173 6471 9.467258 CAAATCCAGTACATAAATGCTAAATGG 57.533 33.333 0.00 0.00 0.00 3.16
6189 6487 5.800296 TCCGATTTTCACTCAAATCCAGTA 58.200 37.500 1.52 0.00 39.20 2.74
6214 6512 3.007473 TCTCTTCAAACCAAAACCGGT 57.993 42.857 0.00 0.00 42.71 5.28
6244 6542 8.027771 ACCGATAGTAGCTGTATATAAAAGCAC 58.972 37.037 16.89 13.19 39.47 4.40
6610 6908 3.451665 AGGTACTGGTCGCACGTT 58.548 55.556 0.00 0.00 37.18 3.99
6671 6970 2.290896 TGCCAAACCTGAATACCTGAGG 60.291 50.000 0.00 0.00 0.00 3.86
6692 6991 5.809001 TGCAACATTCTAACTCTTCTCCAT 58.191 37.500 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.