Multiple sequence alignment - TraesCS5B01G464500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G464500 chr5B 100.000 5720 0 0 1 5720 639142584 639148303 0.000000e+00 10563
1 TraesCS5B01G464500 chr5B 95.745 94 2 2 2334 2427 417444380 417444289 3.570000e-32 150
2 TraesCS5B01G464500 chr5D 89.529 3018 178 56 2477 5425 507891445 507888497 0.000000e+00 3696
3 TraesCS5B01G464500 chr5D 96.327 1225 42 2 848 2071 507893276 507892054 0.000000e+00 2010
4 TraesCS5B01G464500 chr5D 82.697 838 98 25 1 812 507894171 507893355 0.000000e+00 701
5 TraesCS5B01G464500 chr5D 93.617 282 10 5 2060 2340 507891873 507891599 1.150000e-111 414
6 TraesCS5B01G464500 chr5D 88.372 172 20 0 816 987 523091595 523091424 2.090000e-49 207
7 TraesCS5B01G464500 chr5D 89.431 123 5 5 5421 5536 507888444 507888323 1.280000e-31 148
8 TraesCS5B01G464500 chr5A 96.592 1526 47 3 816 2340 635508620 635507099 0.000000e+00 2525
9 TraesCS5B01G464500 chr5A 91.707 1459 73 18 3663 5112 635505778 635504359 0.000000e+00 1980
10 TraesCS5B01G464500 chr5A 92.671 1187 46 19 2475 3639 635506939 635505772 0.000000e+00 1672
11 TraesCS5B01G464500 chr5A 82.019 862 95 24 1 817 635509505 635508659 0.000000e+00 678
12 TraesCS5B01G464500 chr5A 84.100 239 17 10 5400 5630 635503959 635503734 1.610000e-50 211
13 TraesCS5B01G464500 chr2A 90.116 172 17 0 816 987 549725454 549725283 2.070000e-54 224
14 TraesCS5B01G464500 chr4D 88.953 172 19 0 816 987 271103035 271103206 4.490000e-51 213
15 TraesCS5B01G464500 chr4D 88.953 172 19 0 816 987 481398716 481398545 4.490000e-51 213
16 TraesCS5B01G464500 chr6A 88.372 172 20 0 816 987 411235953 411235782 2.090000e-49 207
17 TraesCS5B01G464500 chr7A 87.791 172 20 1 816 987 118989394 118989224 3.500000e-47 200
18 TraesCS5B01G464500 chr7A 87.719 171 21 0 817 987 402926350 402926180 3.500000e-47 200
19 TraesCS5B01G464500 chr6B 96.739 92 3 0 2329 2420 715680153 715680244 2.760000e-33 154
20 TraesCS5B01G464500 chr3B 97.727 88 2 0 2336 2423 762449758 762449845 9.930000e-33 152
21 TraesCS5B01G464500 chr1A 95.745 94 4 0 2335 2428 28616328 28616421 9.930000e-33 152
22 TraesCS5B01G464500 chrUn 93.204 103 5 2 2327 2428 13209435 13209334 3.570000e-32 150
23 TraesCS5B01G464500 chr1B 94.792 96 3 2 2335 2429 623737713 623737807 1.280000e-31 148
24 TraesCS5B01G464500 chr1B 89.908 109 9 2 2313 2421 481238661 481238767 7.730000e-29 139
25 TraesCS5B01G464500 chr7B 90.265 113 7 4 2310 2421 719465181 719465290 1.660000e-30 145
26 TraesCS5B01G464500 chr6D 93.750 96 6 0 2327 2422 104147587 104147682 1.660000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G464500 chr5B 639142584 639148303 5719 False 10563.0 10563 100.0000 1 5720 1 chr5B.!!$F1 5719
1 TraesCS5B01G464500 chr5D 507888323 507894171 5848 True 1393.8 3696 90.3202 1 5536 5 chr5D.!!$R2 5535
2 TraesCS5B01G464500 chr5A 635503734 635509505 5771 True 1413.2 2525 89.4178 1 5630 5 chr5A.!!$R1 5629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 366 0.040425 GCCGCGTTTCATCTTTGTGT 60.040 50.000 4.92 0.0 0.00 3.72 F
476 499 0.243095 AGCGTGTTTCCTCTCCGTAC 59.757 55.000 0.00 0.0 0.00 3.67 F
545 571 0.320771 GAATCTGGGACGTGTGTGCT 60.321 55.000 0.00 0.0 36.55 4.40 F
1800 1901 0.800012 CTCCTACTCGCGAGCTATCC 59.200 60.000 34.83 0.0 0.00 2.59 F
2778 3177 1.499007 TCTCTTTGTCCCCCTGCTTTT 59.501 47.619 0.00 0.0 0.00 2.27 F
3554 3982 0.532115 GGGCATGGCGAACATCTTTT 59.468 50.000 13.76 0.0 37.84 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1901 0.603569 AGCAGTCACCTACTTGGACG 59.396 55.000 0.00 0.00 35.76 4.79 R
2060 2161 2.163509 GGCAGAGAGTGACAGAGTACA 58.836 52.381 0.00 0.00 32.31 2.90 R
2228 2518 3.002791 ACTTGACAACATGCTGGATACG 58.997 45.455 0.45 0.00 42.51 3.06 R
3082 3498 0.951558 AAGAAATGACGGCGCAAAGT 59.048 45.000 10.83 5.82 0.00 2.66 R
4467 4911 0.674581 TGGCTTCCTGCATCAGTTCG 60.675 55.000 0.00 0.00 45.15 3.95 R
5222 5749 0.032130 AGCGAGTACCCATACATGCG 59.968 55.000 0.00 0.00 38.21 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 2.807107 CCTCCGCCCGATCCAATCA 61.807 63.158 0.00 0.00 0.00 2.57
113 130 2.435586 CGCTAGGCTGCTTGCTGT 60.436 61.111 0.00 0.00 42.39 4.40
114 131 2.037136 CGCTAGGCTGCTTGCTGTT 61.037 57.895 0.00 0.00 42.39 3.16
115 132 1.799383 GCTAGGCTGCTTGCTGTTC 59.201 57.895 0.00 0.00 42.39 3.18
119 137 2.684843 GGCTGCTTGCTGTTCTCGG 61.685 63.158 0.00 0.00 42.39 4.63
187 205 7.392494 AGATTCCTAGGGTTTTCGATTTTTC 57.608 36.000 9.46 0.00 0.00 2.29
197 216 5.854866 GGTTTTCGATTTTTCCTTAACCGAG 59.145 40.000 0.00 0.00 0.00 4.63
199 218 3.004862 TCGATTTTTCCTTAACCGAGGC 58.995 45.455 0.00 0.00 36.71 4.70
200 219 2.745281 CGATTTTTCCTTAACCGAGGCA 59.255 45.455 0.00 0.00 36.71 4.75
212 231 2.821810 GAGGCAAGCGCTTCTCCC 60.822 66.667 25.96 22.34 40.93 4.30
232 251 2.322081 GCCAAGGTTTAGCGCGACA 61.322 57.895 12.10 0.00 0.00 4.35
233 252 1.644786 GCCAAGGTTTAGCGCGACAT 61.645 55.000 12.10 0.00 0.00 3.06
248 267 3.507924 CATGCCGCTGCCGCTTAA 61.508 61.111 13.74 0.00 36.33 1.85
255 274 1.723870 GCTGCCGCTTAATCCTGTG 59.276 57.895 0.00 0.00 0.00 3.66
278 297 4.397832 TAGTGCGCCCGGTTTCCC 62.398 66.667 4.18 0.00 0.00 3.97
338 357 2.254951 CTTGCATGCCGCGTTTCA 59.745 55.556 16.68 0.00 46.97 2.69
346 365 0.040514 TGCCGCGTTTCATCTTTGTG 60.041 50.000 4.92 0.00 0.00 3.33
347 366 0.040425 GCCGCGTTTCATCTTTGTGT 60.040 50.000 4.92 0.00 0.00 3.72
383 404 1.220817 GCAATTTGGTGCGGTTGGTG 61.221 55.000 0.00 0.00 34.21 4.17
384 405 1.068921 AATTTGGTGCGGTTGGTGC 59.931 52.632 0.00 0.00 0.00 5.01
389 410 3.578272 GTGCGGTTGGTGCGTTCA 61.578 61.111 0.00 0.00 34.24 3.18
393 414 3.670377 GGTTGGTGCGTTCAGGGC 61.670 66.667 0.00 0.00 0.00 5.19
394 415 2.904866 GTTGGTGCGTTCAGGGCA 60.905 61.111 0.00 0.00 38.25 5.36
402 423 1.828595 TGCGTTCAGGGCATCTTACTA 59.171 47.619 0.00 0.00 35.04 1.82
412 434 4.019321 AGGGCATCTTACTAGCTGTTTTCA 60.019 41.667 0.00 0.00 0.00 2.69
414 436 6.055588 GGGCATCTTACTAGCTGTTTTCATA 58.944 40.000 0.00 0.00 0.00 2.15
417 439 7.659390 GGCATCTTACTAGCTGTTTTCATAGAT 59.341 37.037 0.00 0.00 0.00 1.98
419 441 8.986847 CATCTTACTAGCTGTTTTCATAGATGG 58.013 37.037 0.00 0.00 0.00 3.51
460 483 5.046529 AGATCTCTGCTTGTTATGTTAGCG 58.953 41.667 0.00 0.00 37.73 4.26
467 490 4.156182 GCTTGTTATGTTAGCGTGTTTCC 58.844 43.478 0.00 0.00 0.00 3.13
475 498 1.825090 TAGCGTGTTTCCTCTCCGTA 58.175 50.000 0.00 0.00 0.00 4.02
476 499 0.243095 AGCGTGTTTCCTCTCCGTAC 59.757 55.000 0.00 0.00 0.00 3.67
488 511 4.022416 TCCTCTCCGTACGTAGATCTACTC 60.022 50.000 26.32 16.58 34.04 2.59
489 512 4.022068 CCTCTCCGTACGTAGATCTACTCT 60.022 50.000 26.32 15.61 38.06 3.24
490 513 5.182950 CCTCTCCGTACGTAGATCTACTCTA 59.817 48.000 26.32 14.74 35.28 2.43
498 521 8.020244 CGTACGTAGATCTACTCTAGTATGACA 58.980 40.741 26.32 3.42 37.14 3.58
505 528 1.405821 ACTCTAGTATGACAGTGCCGC 59.594 52.381 0.00 0.00 0.00 6.53
510 533 1.079197 TATGACAGTGCCGCCTGTG 60.079 57.895 16.32 1.48 45.46 3.66
516 539 3.423154 GTGCCGCCTGTGTACAGC 61.423 66.667 6.50 0.00 42.47 4.40
528 551 5.406649 CCTGTGTACAGCTTTTGTTTTGAA 58.593 37.500 6.50 0.00 42.47 2.69
533 556 6.198966 GTGTACAGCTTTTGTTTTGAATCTGG 59.801 38.462 0.00 0.00 41.29 3.86
539 562 3.980646 TTGTTTTGAATCTGGGACGTG 57.019 42.857 0.00 0.00 0.00 4.49
544 570 0.602638 TGAATCTGGGACGTGTGTGC 60.603 55.000 0.00 0.00 35.37 4.57
545 571 0.320771 GAATCTGGGACGTGTGTGCT 60.321 55.000 0.00 0.00 36.55 4.40
552 578 1.160329 GGACGTGTGTGCTTCTGCTT 61.160 55.000 0.00 0.00 40.48 3.91
560 586 3.515502 TGTGTGCTTCTGCTTCTAGGTAT 59.484 43.478 0.00 0.00 40.48 2.73
561 587 4.709886 TGTGTGCTTCTGCTTCTAGGTATA 59.290 41.667 0.00 0.00 40.48 1.47
563 589 4.342378 TGTGCTTCTGCTTCTAGGTATAGG 59.658 45.833 0.00 0.00 40.48 2.57
564 590 3.898123 TGCTTCTGCTTCTAGGTATAGGG 59.102 47.826 0.00 0.00 40.48 3.53
565 591 4.153411 GCTTCTGCTTCTAGGTATAGGGA 58.847 47.826 0.00 0.00 36.03 4.20
566 592 4.219725 GCTTCTGCTTCTAGGTATAGGGAG 59.780 50.000 0.00 0.00 36.03 4.30
573 599 7.997915 TGCTTCTAGGTATAGGGAGTAAGTAT 58.002 38.462 0.00 0.00 0.00 2.12
603 629 5.744171 TGCAGATTACATTAAGAGGCTTCA 58.256 37.500 0.00 0.00 0.00 3.02
612 642 2.725221 AAGAGGCTTCATGCTTAGGG 57.275 50.000 0.00 0.00 42.39 3.53
634 664 5.038683 GGTTTTGTTGGTAGTTTACAGTGC 58.961 41.667 0.00 0.00 0.00 4.40
636 666 3.182341 TGTTGGTAGTTTACAGTGCGT 57.818 42.857 0.00 0.00 0.00 5.24
663 693 5.423886 AGCAAAATCTAGGTAGCTTGTCTC 58.576 41.667 0.00 0.00 0.00 3.36
667 697 2.017782 TCTAGGTAGCTTGTCTCGCAG 58.982 52.381 0.00 0.00 0.00 5.18
690 726 2.421529 GGACCATCCTAATTGAACCGCT 60.422 50.000 0.00 0.00 32.53 5.52
691 727 3.279434 GACCATCCTAATTGAACCGCTT 58.721 45.455 0.00 0.00 0.00 4.68
692 728 3.694566 GACCATCCTAATTGAACCGCTTT 59.305 43.478 0.00 0.00 0.00 3.51
711 747 7.822822 ACCGCTTTTGTTAGTGTAGATTCTATT 59.177 33.333 0.00 0.00 0.00 1.73
730 775 6.349300 TCTATTGTATCTTCTGGGCTTGAAC 58.651 40.000 0.00 0.00 0.00 3.18
733 778 5.755409 TGTATCTTCTGGGCTTGAACTTA 57.245 39.130 0.00 0.00 0.00 2.24
735 780 3.040147 TCTTCTGGGCTTGAACTTACG 57.960 47.619 0.00 0.00 0.00 3.18
736 781 2.631062 TCTTCTGGGCTTGAACTTACGA 59.369 45.455 0.00 0.00 0.00 3.43
747 792 6.256321 GGCTTGAACTTACGATTCGGTTTATA 59.744 38.462 11.29 0.00 0.00 0.98
780 825 8.114102 AGCATATATCATGGATTTGACCTGAAT 58.886 33.333 0.00 0.00 0.00 2.57
1158 1259 2.435059 GGCCGCTCACCAGAGAAC 60.435 66.667 0.00 0.00 44.98 3.01
1461 1562 2.766263 TGAGAGTCAACAGAACACAGGT 59.234 45.455 0.00 0.00 0.00 4.00
1519 1620 3.434319 GTGGCCACGATGTGCCTG 61.434 66.667 22.49 0.00 33.31 4.85
1719 1820 1.696336 CCGATCATCAGTGGGATCCTT 59.304 52.381 12.58 0.00 37.26 3.36
1800 1901 0.800012 CTCCTACTCGCGAGCTATCC 59.200 60.000 34.83 0.00 0.00 2.59
2060 2161 8.696410 AACAAATTAACAAGTGATCGTTGTTT 57.304 26.923 23.54 10.16 43.97 2.83
2174 2464 8.867097 ACCATAACTGACTCAGTAGTTTAAGAA 58.133 33.333 12.22 0.00 44.62 2.52
2208 2498 7.954666 ACATGGCATGTAGGTTTAAAGTATT 57.045 32.000 30.56 0.62 42.78 1.89
2228 2518 6.879458 AGTATTCAGGTTGTGAGAATGGTTAC 59.121 38.462 0.00 0.00 36.21 2.50
2411 2701 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2412 2702 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2413 2703 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2414 2704 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2415 2705 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2416 2706 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2417 2707 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2418 2708 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2419 2709 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
2441 2731 9.331282 GAGTATCTCATAACTTAAACAGCCATT 57.669 33.333 0.00 0.00 0.00 3.16
2446 2736 7.615365 TCTCATAACTTAAACAGCCATTGGAAT 59.385 33.333 6.95 0.00 0.00 3.01
2458 2748 2.164219 CCATTGGAATGAACCCGTCTTG 59.836 50.000 0.00 0.00 38.70 3.02
2459 2749 2.649531 TTGGAATGAACCCGTCTTGT 57.350 45.000 0.00 0.00 0.00 3.16
2460 2750 3.773418 TTGGAATGAACCCGTCTTGTA 57.227 42.857 0.00 0.00 0.00 2.41
2461 2751 3.773418 TGGAATGAACCCGTCTTGTAA 57.227 42.857 0.00 0.00 0.00 2.41
2462 2752 4.088056 TGGAATGAACCCGTCTTGTAAA 57.912 40.909 0.00 0.00 0.00 2.01
2464 2754 5.074115 TGGAATGAACCCGTCTTGTAAAAT 58.926 37.500 0.00 0.00 0.00 1.82
2466 2756 4.939509 ATGAACCCGTCTTGTAAAATCG 57.060 40.909 0.00 0.00 0.00 3.34
2468 2758 4.378774 TGAACCCGTCTTGTAAAATCGAA 58.621 39.130 0.00 0.00 0.00 3.71
2470 2760 5.470777 TGAACCCGTCTTGTAAAATCGAATT 59.529 36.000 0.00 0.00 0.00 2.17
2471 2761 5.952526 ACCCGTCTTGTAAAATCGAATTT 57.047 34.783 3.59 3.59 0.00 1.82
2472 2762 5.695818 ACCCGTCTTGTAAAATCGAATTTG 58.304 37.500 8.73 0.00 31.77 2.32
2473 2763 4.557301 CCCGTCTTGTAAAATCGAATTTGC 59.443 41.667 8.73 7.85 31.77 3.68
2474 2764 5.390613 CCGTCTTGTAAAATCGAATTTGCT 58.609 37.500 13.97 0.00 31.77 3.91
2475 2765 5.283717 CCGTCTTGTAAAATCGAATTTGCTG 59.716 40.000 13.97 7.98 31.77 4.41
2766 3165 7.181125 AGGAGATACAAGTATGGTTCTCTTTGT 59.819 37.037 0.00 0.00 38.11 2.83
2778 3177 1.499007 TCTCTTTGTCCCCCTGCTTTT 59.501 47.619 0.00 0.00 0.00 2.27
2855 3260 2.128729 CCTAGCTGAGGTAGTGGGC 58.871 63.158 16.54 0.00 40.98 5.36
2877 3282 4.055360 CGGTTCATATGCATCGTCCTTTA 58.945 43.478 0.19 0.00 0.00 1.85
3164 3582 8.129161 TGTGCATTTGTTCAATTTTCTACTTG 57.871 30.769 0.00 0.00 0.00 3.16
3229 3648 7.486551 TGTTTTGTTTTTCTCAGTAATGTTCCG 59.513 33.333 0.00 0.00 0.00 4.30
3349 3768 4.003648 AGTTTGTCCTTGAAGCGGATAAG 58.996 43.478 0.00 0.00 33.94 1.73
3467 3889 6.867519 TGATTCTGGTAGTTCATGGACTTA 57.132 37.500 13.07 0.00 0.00 2.24
3550 3978 2.008268 CTTGGGGCATGGCGAACATC 62.008 60.000 13.76 0.00 37.84 3.06
3551 3979 2.124151 GGGGCATGGCGAACATCT 60.124 61.111 13.76 0.00 37.84 2.90
3552 3980 1.754234 GGGGCATGGCGAACATCTT 60.754 57.895 13.76 0.00 37.84 2.40
3553 3981 1.322538 GGGGCATGGCGAACATCTTT 61.323 55.000 13.76 0.00 37.84 2.52
3554 3982 0.532115 GGGCATGGCGAACATCTTTT 59.468 50.000 13.76 0.00 37.84 2.27
3555 3983 1.066929 GGGCATGGCGAACATCTTTTT 60.067 47.619 13.76 0.00 37.84 1.94
3645 4084 9.614792 ACCTGATTAACCAAACAGATAATAGAC 57.385 33.333 0.00 0.00 32.90 2.59
3692 4131 7.765819 GCTTTAAAAATTGGGAGAGCATAACAT 59.234 33.333 0.00 0.00 0.00 2.71
3705 4144 3.765511 AGCATAACATGGTGATTGCAAGT 59.234 39.130 14.92 0.00 39.92 3.16
3712 4151 3.641437 TGGTGATTGCAAGTTAAGTGC 57.359 42.857 4.94 4.44 42.55 4.40
3748 4187 8.436970 GTTTTGTAAACAGTGTTTTTAGTTGGG 58.563 33.333 25.35 0.00 0.00 4.12
3796 4235 5.439721 TCAACAAGGATAACCAGGATGATG 58.560 41.667 0.00 0.00 39.69 3.07
3807 4246 0.908910 AGGATGATGTAACGGCACCA 59.091 50.000 0.00 0.00 0.00 4.17
3812 4251 4.336993 GGATGATGTAACGGCACCATTTAA 59.663 41.667 0.00 0.00 0.00 1.52
3828 4267 9.040939 GCACCATTTAATTCTTAACTTTTGTGT 57.959 29.630 0.00 0.00 0.00 3.72
3843 4282 6.581712 ACTTTTGTGTGGCAATTCTTAATGT 58.418 32.000 0.00 0.00 36.89 2.71
3870 4310 8.186709 CCATTAAATTCTTAAGGGCTCATCAT 57.813 34.615 1.85 0.00 40.88 2.45
3884 4324 4.121317 GCTCATCATCCTCTGTTCTCTTG 58.879 47.826 0.00 0.00 0.00 3.02
3885 4325 4.382901 GCTCATCATCCTCTGTTCTCTTGT 60.383 45.833 0.00 0.00 0.00 3.16
3975 4417 1.762708 ATACAAATGGGTTCCCTGCG 58.237 50.000 9.43 0.00 0.00 5.18
4011 4453 3.782046 AGATCGTACACAACAGGTATGC 58.218 45.455 0.00 0.00 0.00 3.14
4029 4471 1.160137 GCCAGAGCTGTGTTTACCTG 58.840 55.000 10.34 0.00 35.50 4.00
4030 4472 1.270839 GCCAGAGCTGTGTTTACCTGA 60.271 52.381 10.34 0.00 35.50 3.86
4044 4488 9.521841 TGTGTTTACCTGAACATTATATGGAAA 57.478 29.630 0.00 0.00 41.18 3.13
4051 4495 8.732854 ACCTGAACATTATATGGAAATCCCTTA 58.267 33.333 0.00 0.00 35.38 2.69
4052 4496 9.759473 CCTGAACATTATATGGAAATCCCTTAT 57.241 33.333 0.00 0.00 38.43 1.73
4075 4519 5.916661 TTCCTGGACGCTAATATCTATCC 57.083 43.478 0.00 0.00 0.00 2.59
4080 4524 6.097554 CCTGGACGCTAATATCTATCCTCAAT 59.902 42.308 0.00 0.00 0.00 2.57
4084 4528 9.073475 GGACGCTAATATCTATCCTCAATATCT 57.927 37.037 0.00 0.00 0.00 1.98
4152 4596 4.102210 ACCACCATCTGAATATCTGTCTGG 59.898 45.833 0.00 0.00 0.00 3.86
4157 4601 7.770433 CACCATCTGAATATCTGTCTGGTTTTA 59.230 37.037 9.63 0.00 33.75 1.52
4162 4606 8.539544 TCTGAATATCTGTCTGGTTTTACATGA 58.460 33.333 0.00 0.00 0.00 3.07
4163 4607 8.722480 TGAATATCTGTCTGGTTTTACATGAG 57.278 34.615 0.00 0.00 0.00 2.90
4164 4608 8.539544 TGAATATCTGTCTGGTTTTACATGAGA 58.460 33.333 0.00 0.00 0.00 3.27
4171 4615 6.826231 TGTCTGGTTTTACATGAGAAGTTGAA 59.174 34.615 0.00 0.00 0.00 2.69
4173 4617 8.352942 GTCTGGTTTTACATGAGAAGTTGAATT 58.647 33.333 0.00 0.00 0.00 2.17
4225 4669 3.892284 TCCTTGTGCTTGTTTGGTCTTA 58.108 40.909 0.00 0.00 0.00 2.10
4414 4858 1.349357 GAAGAGCTGGGAAGTCTGGTT 59.651 52.381 0.00 0.00 0.00 3.67
4578 5022 3.314331 CGCAGGTCAGGAGGTGGT 61.314 66.667 0.00 0.00 0.00 4.16
4752 5208 6.015434 ACCTGGTAATGGTGAGAAATTGAAAC 60.015 38.462 0.00 0.00 36.30 2.78
4864 5320 4.383661 GCCCCCATTTACCTTATTTTGTGG 60.384 45.833 0.00 0.00 0.00 4.17
4912 5368 3.941573 TCCCGTGTACTGGTTATTTTCC 58.058 45.455 0.00 0.00 0.00 3.13
4920 5376 1.396996 CTGGTTATTTTCCGACTGGCG 59.603 52.381 0.00 0.00 40.47 5.69
4960 5416 2.079020 TTTCCTGTTGCTGCTGCTGC 62.079 55.000 22.51 22.51 40.48 5.25
4961 5417 2.971095 TTCCTGTTGCTGCTGCTGCT 62.971 55.000 27.67 0.00 40.48 4.24
4962 5418 2.255554 CTGTTGCTGCTGCTGCTG 59.744 61.111 27.67 16.73 40.48 4.41
5000 5456 2.777459 TATTGTTGGGTGGGTTGGTT 57.223 45.000 0.00 0.00 0.00 3.67
5036 5492 3.063997 GCGCTTCTGCTTCTTTATTAGCA 59.936 43.478 0.00 0.00 44.58 3.49
5037 5493 4.437390 GCGCTTCTGCTTCTTTATTAGCAA 60.437 41.667 0.00 0.00 45.89 3.91
5068 5525 3.679389 TGGATCCTTTTCTGCTCAACTC 58.321 45.455 14.23 0.00 0.00 3.01
5071 5528 4.394610 GGATCCTTTTCTGCTCAACTCTTC 59.605 45.833 3.84 0.00 0.00 2.87
5074 5531 5.542779 TCCTTTTCTGCTCAACTCTTCTAC 58.457 41.667 0.00 0.00 0.00 2.59
5112 5569 0.822164 AATGCTGAGATTGCTTGCCC 59.178 50.000 0.00 0.00 0.00 5.36
5153 5664 3.074412 CCCGCTTCAAAGTACTTGACAT 58.926 45.455 9.34 0.00 43.90 3.06
5181 5708 8.640291 CATTTGCATTTCACAAATAAAATTGGC 58.360 29.630 1.74 0.00 43.94 4.52
5211 5738 6.865411 TGGATTCATATTTGTGGTTGTGATG 58.135 36.000 0.00 0.00 0.00 3.07
5220 5747 2.292267 GTGGTTGTGATGATAGCCTGG 58.708 52.381 0.00 0.00 0.00 4.45
5222 5749 1.312815 GTTGTGATGATAGCCTGGCC 58.687 55.000 16.57 0.00 0.00 5.36
5249 5776 7.435488 GCATGTATGGGTACTCGCTATTTATAG 59.565 40.741 0.00 0.00 0.00 1.31
5250 5777 8.683615 CATGTATGGGTACTCGCTATTTATAGA 58.316 37.037 0.97 0.00 32.05 1.98
5251 5778 8.640063 TGTATGGGTACTCGCTATTTATAGAA 57.360 34.615 0.97 0.00 32.05 2.10
5252 5779 9.251440 TGTATGGGTACTCGCTATTTATAGAAT 57.749 33.333 0.97 0.00 32.05 2.40
5256 5783 9.470399 TGGGTACTCGCTATTTATAGAATATCA 57.530 33.333 0.97 0.00 32.05 2.15
5257 5784 9.733219 GGGTACTCGCTATTTATAGAATATCAC 57.267 37.037 0.97 0.00 32.05 3.06
5258 5785 9.435802 GGTACTCGCTATTTATAGAATATCACG 57.564 37.037 0.97 0.00 32.05 4.35
5274 5801 9.449719 AGAATATCACGAAAAGATAACTTGGTT 57.550 29.630 0.00 0.00 36.39 3.67
5296 5835 9.138596 TGGTTAGTTTTATTTACCAAGAAGCTT 57.861 29.630 0.00 0.00 36.03 3.74
5322 5866 8.076781 TGATTTGTTCCAATTTTCATGCAATTG 58.923 29.630 17.24 17.24 40.11 2.32
5323 5867 5.359716 TGTTCCAATTTTCATGCAATTGC 57.640 34.783 23.69 23.69 39.40 3.56
5324 5868 5.064558 TGTTCCAATTTTCATGCAATTGCT 58.935 33.333 29.37 13.52 39.40 3.91
5361 5917 6.779860 ACCTATGTTAACAGTCCAATTCTGT 58.220 36.000 14.65 0.00 46.30 3.41
5362 5918 6.655003 ACCTATGTTAACAGTCCAATTCTGTG 59.345 38.462 14.65 0.00 44.03 3.66
5363 5919 4.829064 TGTTAACAGTCCAATTCTGTGC 57.171 40.909 3.59 0.00 44.03 4.57
5364 5920 4.203226 TGTTAACAGTCCAATTCTGTGCA 58.797 39.130 3.59 0.00 44.03 4.57
5367 5923 3.213206 ACAGTCCAATTCTGTGCAAGA 57.787 42.857 0.00 0.00 43.32 3.02
5417 5991 3.221222 GCTGGTACTGCGGGATCT 58.779 61.111 0.00 0.00 44.58 2.75
5429 6060 2.027192 TGCGGGATCTCTTTAGTTTGCT 60.027 45.455 0.00 0.00 0.00 3.91
5435 6066 6.538742 CGGGATCTCTTTAGTTTGCTCAATAA 59.461 38.462 0.00 0.00 0.00 1.40
5476 6107 3.498927 CGTATTCTTACGGTGTGGAGT 57.501 47.619 0.00 0.00 45.86 3.85
5477 6108 3.432782 CGTATTCTTACGGTGTGGAGTC 58.567 50.000 0.00 0.00 45.86 3.36
5478 6109 3.128242 CGTATTCTTACGGTGTGGAGTCT 59.872 47.826 0.00 0.00 45.86 3.24
5479 6110 4.380233 CGTATTCTTACGGTGTGGAGTCTT 60.380 45.833 0.00 0.00 45.86 3.01
5490 6128 5.983720 CGGTGTGGAGTCTTGGTATATAAAG 59.016 44.000 0.00 0.00 0.00 1.85
5548 6187 6.107343 AGAGGATCGCTTTAGTTAGGAAAAC 58.893 40.000 0.00 0.00 42.67 2.43
5549 6188 5.801380 AGGATCGCTTTAGTTAGGAAAACA 58.199 37.500 0.00 0.00 0.00 2.83
5550 6189 5.642491 AGGATCGCTTTAGTTAGGAAAACAC 59.358 40.000 0.00 0.00 0.00 3.32
5551 6190 4.977741 TCGCTTTAGTTAGGAAAACACG 57.022 40.909 0.00 0.00 0.00 4.49
5552 6191 3.742369 TCGCTTTAGTTAGGAAAACACGG 59.258 43.478 0.00 0.00 0.00 4.94
5553 6192 3.120442 CGCTTTAGTTAGGAAAACACGGG 60.120 47.826 0.00 0.00 0.00 5.28
5554 6193 4.067192 GCTTTAGTTAGGAAAACACGGGA 58.933 43.478 0.00 0.00 0.00 5.14
5555 6194 4.153655 GCTTTAGTTAGGAAAACACGGGAG 59.846 45.833 0.00 0.00 0.00 4.30
5556 6195 2.853235 AGTTAGGAAAACACGGGAGG 57.147 50.000 0.00 0.00 0.00 4.30
5557 6196 2.052468 AGTTAGGAAAACACGGGAGGT 58.948 47.619 0.00 0.00 0.00 3.85
5558 6197 3.242011 AGTTAGGAAAACACGGGAGGTA 58.758 45.455 0.00 0.00 0.00 3.08
5559 6198 3.260128 AGTTAGGAAAACACGGGAGGTAG 59.740 47.826 0.00 0.00 0.00 3.18
5565 6204 2.120737 AACACGGGAGGTAGGGCAAC 62.121 60.000 0.00 0.00 0.00 4.17
5571 6210 2.995574 AGGTAGGGCAACGCGACT 60.996 61.111 15.93 5.16 37.60 4.18
5576 6215 2.067091 TAGGGCAACGCGACTATCGG 62.067 60.000 15.93 0.00 40.84 4.18
5579 6218 2.960129 CAACGCGACTATCGGCCC 60.960 66.667 15.93 0.00 40.84 5.80
5591 6230 1.925285 ATCGGCCCAGGCAAAGATGA 61.925 55.000 11.50 0.00 44.11 2.92
5599 6238 2.426024 CCAGGCAAAGATGACATTGAGG 59.574 50.000 0.00 0.00 36.86 3.86
5611 6251 4.832248 TGACATTGAGGTGATACCACTTC 58.168 43.478 0.00 0.00 46.08 3.01
5630 6270 0.680921 CCAACGGATTGTCATGCCCT 60.681 55.000 0.00 0.00 33.60 5.19
5631 6271 0.734889 CAACGGATTGTCATGCCCTC 59.265 55.000 0.00 0.00 0.00 4.30
5632 6272 0.327924 AACGGATTGTCATGCCCTCA 59.672 50.000 0.00 0.00 0.00 3.86
5633 6273 0.548031 ACGGATTGTCATGCCCTCAT 59.452 50.000 0.00 0.00 0.00 2.90
5644 6284 4.030314 CATGCCCTCATGGATTACATCT 57.970 45.455 0.00 0.00 44.84 2.90
5645 6285 4.404640 CATGCCCTCATGGATTACATCTT 58.595 43.478 0.00 0.00 44.84 2.40
5646 6286 4.090761 TGCCCTCATGGATTACATCTTC 57.909 45.455 0.00 0.00 37.84 2.87
5647 6287 3.070018 GCCCTCATGGATTACATCTTCG 58.930 50.000 0.00 0.00 37.84 3.79
5648 6288 3.244215 GCCCTCATGGATTACATCTTCGA 60.244 47.826 0.00 0.00 37.84 3.71
5649 6289 4.564041 CCCTCATGGATTACATCTTCGAG 58.436 47.826 0.00 0.00 37.84 4.04
5650 6290 4.039730 CCCTCATGGATTACATCTTCGAGT 59.960 45.833 0.00 0.00 37.84 4.18
5651 6291 5.453903 CCCTCATGGATTACATCTTCGAGTT 60.454 44.000 0.00 0.00 37.84 3.01
5652 6292 5.694006 CCTCATGGATTACATCTTCGAGTTC 59.306 44.000 0.00 0.00 37.84 3.01
5653 6293 6.462207 CCTCATGGATTACATCTTCGAGTTCT 60.462 42.308 0.00 0.00 37.84 3.01
5654 6294 6.507900 TCATGGATTACATCTTCGAGTTCTC 58.492 40.000 0.00 0.00 37.84 2.87
5655 6295 5.914898 TGGATTACATCTTCGAGTTCTCA 57.085 39.130 0.79 0.00 0.00 3.27
5656 6296 6.471233 TGGATTACATCTTCGAGTTCTCAT 57.529 37.500 0.79 0.00 0.00 2.90
5657 6297 6.507900 TGGATTACATCTTCGAGTTCTCATC 58.492 40.000 0.79 0.00 0.00 2.92
5658 6298 6.096846 TGGATTACATCTTCGAGTTCTCATCA 59.903 38.462 0.79 0.00 0.00 3.07
5659 6299 6.980978 GGATTACATCTTCGAGTTCTCATCAA 59.019 38.462 0.79 0.00 0.00 2.57
5660 6300 7.168972 GGATTACATCTTCGAGTTCTCATCAAG 59.831 40.741 0.79 0.21 0.00 3.02
5661 6301 4.753233 ACATCTTCGAGTTCTCATCAAGG 58.247 43.478 0.79 0.00 0.00 3.61
5662 6302 4.221703 ACATCTTCGAGTTCTCATCAAGGT 59.778 41.667 0.79 0.00 0.00 3.50
5663 6303 4.179926 TCTTCGAGTTCTCATCAAGGTG 57.820 45.455 0.79 0.00 0.00 4.00
5664 6304 3.574396 TCTTCGAGTTCTCATCAAGGTGT 59.426 43.478 0.79 0.00 0.00 4.16
5665 6305 4.039245 TCTTCGAGTTCTCATCAAGGTGTT 59.961 41.667 0.79 0.00 0.00 3.32
5666 6306 5.243060 TCTTCGAGTTCTCATCAAGGTGTTA 59.757 40.000 0.79 0.00 0.00 2.41
5667 6307 5.060662 TCGAGTTCTCATCAAGGTGTTAG 57.939 43.478 0.79 0.00 0.00 2.34
5668 6308 3.614616 CGAGTTCTCATCAAGGTGTTAGC 59.385 47.826 0.79 0.00 0.00 3.09
5669 6309 4.569943 GAGTTCTCATCAAGGTGTTAGCA 58.430 43.478 0.00 0.00 0.00 3.49
5670 6310 4.573900 AGTTCTCATCAAGGTGTTAGCAG 58.426 43.478 0.00 0.00 0.00 4.24
5671 6311 4.284490 AGTTCTCATCAAGGTGTTAGCAGA 59.716 41.667 0.00 0.00 0.00 4.26
5672 6312 4.890158 TCTCATCAAGGTGTTAGCAGAA 57.110 40.909 0.00 0.00 0.00 3.02
5673 6313 5.227569 TCTCATCAAGGTGTTAGCAGAAA 57.772 39.130 0.00 0.00 0.00 2.52
5674 6314 4.997395 TCTCATCAAGGTGTTAGCAGAAAC 59.003 41.667 0.00 0.00 0.00 2.78
5675 6315 4.713553 TCATCAAGGTGTTAGCAGAAACA 58.286 39.130 0.00 0.00 37.03 2.83
5676 6316 5.129634 TCATCAAGGTGTTAGCAGAAACAA 58.870 37.500 1.46 0.00 40.85 2.83
5677 6317 5.592282 TCATCAAGGTGTTAGCAGAAACAAA 59.408 36.000 1.46 0.00 40.85 2.83
5678 6318 5.243426 TCAAGGTGTTAGCAGAAACAAAC 57.757 39.130 1.46 0.00 40.85 2.93
5679 6319 4.947388 TCAAGGTGTTAGCAGAAACAAACT 59.053 37.500 1.46 1.59 40.85 2.66
5680 6320 5.417580 TCAAGGTGTTAGCAGAAACAAACTT 59.582 36.000 1.46 6.48 40.85 2.66
5681 6321 6.600032 TCAAGGTGTTAGCAGAAACAAACTTA 59.400 34.615 12.86 5.17 40.85 2.24
5682 6322 6.373186 AGGTGTTAGCAGAAACAAACTTAC 57.627 37.500 1.46 0.00 40.85 2.34
5683 6323 5.007332 AGGTGTTAGCAGAAACAAACTTACG 59.993 40.000 1.46 0.00 40.85 3.18
5684 6324 4.669283 GTGTTAGCAGAAACAAACTTACGC 59.331 41.667 1.46 0.00 40.85 4.42
5685 6325 4.216731 GTTAGCAGAAACAAACTTACGCC 58.783 43.478 0.00 0.00 0.00 5.68
5686 6326 1.607148 AGCAGAAACAAACTTACGCCC 59.393 47.619 0.00 0.00 0.00 6.13
5687 6327 1.607148 GCAGAAACAAACTTACGCCCT 59.393 47.619 0.00 0.00 0.00 5.19
5688 6328 2.034179 GCAGAAACAAACTTACGCCCTT 59.966 45.455 0.00 0.00 0.00 3.95
5689 6329 3.852205 GCAGAAACAAACTTACGCCCTTC 60.852 47.826 0.00 0.00 0.00 3.46
5690 6330 3.314080 CAGAAACAAACTTACGCCCTTCA 59.686 43.478 0.00 0.00 0.00 3.02
5691 6331 3.314357 AGAAACAAACTTACGCCCTTCAC 59.686 43.478 0.00 0.00 0.00 3.18
5692 6332 2.335316 ACAAACTTACGCCCTTCACA 57.665 45.000 0.00 0.00 0.00 3.58
5693 6333 2.858745 ACAAACTTACGCCCTTCACAT 58.141 42.857 0.00 0.00 0.00 3.21
5694 6334 3.219281 ACAAACTTACGCCCTTCACATT 58.781 40.909 0.00 0.00 0.00 2.71
5695 6335 3.252458 ACAAACTTACGCCCTTCACATTC 59.748 43.478 0.00 0.00 0.00 2.67
5696 6336 3.418684 AACTTACGCCCTTCACATTCT 57.581 42.857 0.00 0.00 0.00 2.40
5697 6337 2.699954 ACTTACGCCCTTCACATTCTG 58.300 47.619 0.00 0.00 0.00 3.02
5698 6338 2.009774 CTTACGCCCTTCACATTCTGG 58.990 52.381 0.00 0.00 0.00 3.86
5699 6339 0.981183 TACGCCCTTCACATTCTGGT 59.019 50.000 0.00 0.00 0.00 4.00
5700 6340 0.321653 ACGCCCTTCACATTCTGGTC 60.322 55.000 0.00 0.00 0.00 4.02
5701 6341 1.361668 CGCCCTTCACATTCTGGTCG 61.362 60.000 0.00 0.00 0.00 4.79
5702 6342 0.321653 GCCCTTCACATTCTGGTCGT 60.322 55.000 0.00 0.00 0.00 4.34
5703 6343 1.882352 GCCCTTCACATTCTGGTCGTT 60.882 52.381 0.00 0.00 0.00 3.85
5704 6344 2.504367 CCCTTCACATTCTGGTCGTTT 58.496 47.619 0.00 0.00 0.00 3.60
5705 6345 2.226437 CCCTTCACATTCTGGTCGTTTG 59.774 50.000 0.00 0.00 0.00 2.93
5706 6346 2.226437 CCTTCACATTCTGGTCGTTTGG 59.774 50.000 0.00 0.00 0.00 3.28
5707 6347 1.890876 TCACATTCTGGTCGTTTGGG 58.109 50.000 0.00 0.00 0.00 4.12
5708 6348 1.418264 TCACATTCTGGTCGTTTGGGA 59.582 47.619 0.00 0.00 0.00 4.37
5709 6349 2.039746 TCACATTCTGGTCGTTTGGGAT 59.960 45.455 0.00 0.00 0.00 3.85
5710 6350 3.262151 TCACATTCTGGTCGTTTGGGATA 59.738 43.478 0.00 0.00 0.00 2.59
5711 6351 3.374058 CACATTCTGGTCGTTTGGGATAC 59.626 47.826 0.00 0.00 0.00 2.24
5712 6352 2.373540 TTCTGGTCGTTTGGGATACG 57.626 50.000 0.00 0.00 40.23 3.06
5713 6353 1.548081 TCTGGTCGTTTGGGATACGA 58.452 50.000 0.00 0.00 44.88 3.43
5717 6357 2.980541 TCGTTTGGGATACGAGGGT 58.019 52.632 0.00 0.00 42.51 4.34
5718 6358 0.819582 TCGTTTGGGATACGAGGGTC 59.180 55.000 0.00 0.00 42.51 4.46
5719 6359 0.822164 CGTTTGGGATACGAGGGTCT 59.178 55.000 0.00 0.00 41.33 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 1.301244 CTGATTGGATCGGGCGGAG 60.301 63.158 0.20 0.00 31.92 4.63
46 48 2.294979 GAGAACAAAACCACGGGAACT 58.705 47.619 0.00 0.00 0.00 3.01
113 130 1.975680 ACAGCTAGAAAACCCCGAGAA 59.024 47.619 0.00 0.00 0.00 2.87
114 131 1.549170 GACAGCTAGAAAACCCCGAGA 59.451 52.381 0.00 0.00 0.00 4.04
115 132 1.736032 CGACAGCTAGAAAACCCCGAG 60.736 57.143 0.00 0.00 0.00 4.63
119 137 1.359459 CGCCGACAGCTAGAAAACCC 61.359 60.000 0.00 0.00 40.39 4.11
187 205 2.750888 GCGCTTGCCTCGGTTAAGG 61.751 63.158 0.00 0.00 39.62 2.69
212 231 4.160635 CGCGCTAAACCTTGGCCG 62.161 66.667 5.56 0.00 33.01 6.13
278 297 0.453793 AGATCGAACCACTGCGAGAG 59.546 55.000 0.00 0.00 40.14 3.20
338 357 4.271049 CGGAAATCTCGCATACACAAAGAT 59.729 41.667 0.00 0.00 0.00 2.40
383 404 2.474816 CTAGTAAGATGCCCTGAACGC 58.525 52.381 0.00 0.00 0.00 4.84
384 405 2.101582 AGCTAGTAAGATGCCCTGAACG 59.898 50.000 0.00 0.00 0.00 3.95
389 410 4.019321 TGAAAACAGCTAGTAAGATGCCCT 60.019 41.667 0.00 0.00 43.10 5.19
393 414 8.986847 CCATCTATGAAAACAGCTAGTAAGATG 58.013 37.037 0.00 0.00 44.88 2.90
394 415 7.659390 GCCATCTATGAAAACAGCTAGTAAGAT 59.341 37.037 0.00 0.00 0.00 2.40
402 423 2.991250 ACGCCATCTATGAAAACAGCT 58.009 42.857 0.00 0.00 0.00 4.24
412 434 3.823873 TCCAAACACAAAACGCCATCTAT 59.176 39.130 0.00 0.00 0.00 1.98
414 436 2.028130 TCCAAACACAAAACGCCATCT 58.972 42.857 0.00 0.00 0.00 2.90
417 439 0.179161 CGTCCAAACACAAAACGCCA 60.179 50.000 0.00 0.00 0.00 5.69
419 441 1.062880 TCTCGTCCAAACACAAAACGC 59.937 47.619 0.00 0.00 33.58 4.84
460 483 2.744202 TCTACGTACGGAGAGGAAACAC 59.256 50.000 26.23 0.00 30.40 3.32
467 490 5.125100 AGAGTAGATCTACGTACGGAGAG 57.875 47.826 32.05 19.46 38.66 3.20
475 498 7.868922 CACTGTCATACTAGAGTAGATCTACGT 59.131 40.741 23.82 18.20 40.80 3.57
476 499 7.148705 GCACTGTCATACTAGAGTAGATCTACG 60.149 44.444 23.82 13.91 40.80 3.51
488 511 0.747255 AGGCGGCACTGTCATACTAG 59.253 55.000 13.08 0.00 0.00 2.57
489 512 0.459899 CAGGCGGCACTGTCATACTA 59.540 55.000 13.08 0.00 33.81 1.82
490 513 1.219124 CAGGCGGCACTGTCATACT 59.781 57.895 13.08 0.00 33.81 2.12
498 521 2.343758 CTGTACACAGGCGGCACT 59.656 61.111 13.08 0.00 40.20 4.40
505 528 4.992688 TCAAAACAAAAGCTGTACACAGG 58.007 39.130 11.18 0.00 43.94 4.00
510 533 5.691754 CCCAGATTCAAAACAAAAGCTGTAC 59.308 40.000 0.00 0.00 37.23 2.90
516 539 4.739716 CACGTCCCAGATTCAAAACAAAAG 59.260 41.667 0.00 0.00 0.00 2.27
528 551 0.320771 GAAGCACACACGTCCCAGAT 60.321 55.000 0.00 0.00 0.00 2.90
533 556 1.160329 AAGCAGAAGCACACACGTCC 61.160 55.000 0.00 0.00 45.49 4.79
539 562 2.464157 ACCTAGAAGCAGAAGCACAC 57.536 50.000 0.00 0.00 45.49 3.82
544 570 5.390387 ACTCCCTATACCTAGAAGCAGAAG 58.610 45.833 0.00 0.00 0.00 2.85
545 571 5.405063 ACTCCCTATACCTAGAAGCAGAA 57.595 43.478 0.00 0.00 0.00 3.02
573 599 7.495934 GCCTCTTAATGTAATCTGCAAGTCTAA 59.504 37.037 0.00 0.00 33.76 2.10
603 629 4.736473 ACTACCAACAAAACCCTAAGCAT 58.264 39.130 0.00 0.00 0.00 3.79
612 642 4.731480 CGCACTGTAAACTACCAACAAAAC 59.269 41.667 0.00 0.00 0.00 2.43
634 664 5.533482 AGCTACCTAGATTTTGCTCATACG 58.467 41.667 0.00 0.00 0.00 3.06
636 666 6.889198 ACAAGCTACCTAGATTTTGCTCATA 58.111 36.000 0.00 0.00 27.90 2.15
663 693 2.103094 TCAATTAGGATGGTCCTCTGCG 59.897 50.000 0.97 0.00 45.66 5.18
667 697 3.467803 CGGTTCAATTAGGATGGTCCTC 58.532 50.000 0.97 0.00 45.66 3.71
675 705 5.766174 ACTAACAAAAGCGGTTCAATTAGGA 59.234 36.000 19.79 0.00 0.00 2.94
682 718 4.695396 TCTACACTAACAAAAGCGGTTCA 58.305 39.130 0.00 0.00 0.00 3.18
687 723 8.656849 ACAATAGAATCTACACTAACAAAAGCG 58.343 33.333 0.00 0.00 0.00 4.68
711 747 4.640771 AAGTTCAAGCCCAGAAGATACA 57.359 40.909 0.00 0.00 0.00 2.29
733 778 8.997621 ATGCTAACATATATAAACCGAATCGT 57.002 30.769 0.82 0.00 33.67 3.73
754 799 7.024345 TCAGGTCAAATCCATGATATATGCT 57.976 36.000 0.00 0.00 0.00 3.79
755 800 7.692460 TTCAGGTCAAATCCATGATATATGC 57.308 36.000 0.00 0.00 0.00 3.14
756 801 9.682465 AGATTCAGGTCAAATCCATGATATATG 57.318 33.333 0.00 0.00 34.34 1.78
780 825 5.963176 ATCAAACACATGTGTAATGCAGA 57.037 34.783 30.75 20.41 44.13 4.26
814 862 4.265073 CTTTGGCAAGGTATAAGAGCAGT 58.735 43.478 0.00 0.00 0.00 4.40
830 918 7.602265 TCAGGTTAGAAATATTTTTGCTTTGGC 59.398 33.333 1.43 0.00 39.26 4.52
845 933 7.093945 ACAAAAAGAAGTGCTTCAGGTTAGAAA 60.094 33.333 13.58 0.00 41.84 2.52
853 941 5.883661 TCTGAACAAAAAGAAGTGCTTCAG 58.116 37.500 13.58 0.00 41.84 3.02
894 994 7.823149 AAAGTAGACCACGACAATATGTTAC 57.177 36.000 0.00 0.00 0.00 2.50
896 996 7.227910 ACAAAAAGTAGACCACGACAATATGTT 59.772 33.333 0.00 0.00 0.00 2.71
1236 1337 3.716006 CGAGTGCCACCAACAGCG 61.716 66.667 0.00 0.00 0.00 5.18
1461 1562 7.289310 TGTCCTCATAGGCATCAAAATTGATA 58.711 34.615 8.24 0.00 39.62 2.15
1519 1620 1.202348 GCAAACGTGTTGACTGCTGC 61.202 55.000 12.62 0.00 0.00 5.25
1719 1820 1.347707 CTCTGTGGTGGCCTTGACTTA 59.652 52.381 3.32 0.00 0.00 2.24
1743 1844 3.639094 GAGGAAATGCAGTCCTAGCTCTA 59.361 47.826 19.17 0.00 45.87 2.43
1800 1901 0.603569 AGCAGTCACCTACTTGGACG 59.396 55.000 0.00 0.00 35.76 4.79
1879 1980 6.487668 TGCTTCTTCATGAATCTGAGAAACAA 59.512 34.615 8.96 0.00 33.71 2.83
1880 1981 5.999600 TGCTTCTTCATGAATCTGAGAAACA 59.000 36.000 8.96 7.28 33.71 2.83
2060 2161 2.163509 GGCAGAGAGTGACAGAGTACA 58.836 52.381 0.00 0.00 32.31 2.90
2174 2464 9.640952 AAACCTACATGCCATGTTATATAACTT 57.359 29.630 22.82 15.59 41.63 2.66
2179 2469 9.640952 ACTTTAAACCTACATGCCATGTTATAT 57.359 29.630 16.67 2.23 41.63 0.86
2194 2484 8.653191 TCTCACAACCTGAATACTTTAAACCTA 58.347 33.333 0.00 0.00 0.00 3.08
2208 2498 3.070446 ACGTAACCATTCTCACAACCTGA 59.930 43.478 0.00 0.00 0.00 3.86
2228 2518 3.002791 ACTTGACAACATGCTGGATACG 58.997 45.455 0.45 0.00 42.51 3.06
2385 2675 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2386 2676 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2387 2677 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2388 2678 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2389 2679 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2390 2680 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2391 2681 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2392 2682 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2393 2683 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2397 2687 9.678260 GAGATACTCCCTCCGTAAACTAATATA 57.322 37.037 0.00 0.00 0.00 0.86
2398 2688 8.168725 TGAGATACTCCCTCCGTAAACTAATAT 58.831 37.037 0.00 0.00 0.00 1.28
2399 2689 7.520798 TGAGATACTCCCTCCGTAAACTAATA 58.479 38.462 0.00 0.00 0.00 0.98
2400 2690 6.371278 TGAGATACTCCCTCCGTAAACTAAT 58.629 40.000 0.00 0.00 0.00 1.73
2401 2691 5.759059 TGAGATACTCCCTCCGTAAACTAA 58.241 41.667 0.00 0.00 0.00 2.24
2402 2692 5.378230 TGAGATACTCCCTCCGTAAACTA 57.622 43.478 0.00 0.00 0.00 2.24
2403 2693 4.246712 TGAGATACTCCCTCCGTAAACT 57.753 45.455 0.00 0.00 0.00 2.66
2404 2694 6.264970 AGTTATGAGATACTCCCTCCGTAAAC 59.735 42.308 0.00 0.00 0.00 2.01
2405 2695 6.371278 AGTTATGAGATACTCCCTCCGTAAA 58.629 40.000 0.00 0.00 0.00 2.01
2406 2696 5.950023 AGTTATGAGATACTCCCTCCGTAA 58.050 41.667 0.00 0.00 0.00 3.18
2407 2697 5.579753 AGTTATGAGATACTCCCTCCGTA 57.420 43.478 0.00 0.00 0.00 4.02
2408 2698 4.456662 AGTTATGAGATACTCCCTCCGT 57.543 45.455 0.00 0.00 0.00 4.69
2409 2699 6.896021 TTAAGTTATGAGATACTCCCTCCG 57.104 41.667 0.00 0.00 0.00 4.63
2410 2700 8.019656 TGTTTAAGTTATGAGATACTCCCTCC 57.980 38.462 0.00 0.00 0.00 4.30
2411 2701 7.654116 GCTGTTTAAGTTATGAGATACTCCCTC 59.346 40.741 0.00 0.00 0.00 4.30
2412 2702 7.419172 GGCTGTTTAAGTTATGAGATACTCCCT 60.419 40.741 0.00 0.00 0.00 4.20
2413 2703 6.706716 GGCTGTTTAAGTTATGAGATACTCCC 59.293 42.308 0.00 0.00 0.00 4.30
2414 2704 7.272978 TGGCTGTTTAAGTTATGAGATACTCC 58.727 38.462 0.00 0.00 0.00 3.85
2415 2705 8.894768 ATGGCTGTTTAAGTTATGAGATACTC 57.105 34.615 0.00 0.00 0.00 2.59
2416 2706 9.113838 CAATGGCTGTTTAAGTTATGAGATACT 57.886 33.333 0.00 0.00 0.00 2.12
2417 2707 8.345565 CCAATGGCTGTTTAAGTTATGAGATAC 58.654 37.037 0.00 0.00 0.00 2.24
2418 2708 8.271458 TCCAATGGCTGTTTAAGTTATGAGATA 58.729 33.333 0.00 0.00 0.00 1.98
2419 2709 7.118723 TCCAATGGCTGTTTAAGTTATGAGAT 58.881 34.615 0.00 0.00 0.00 2.75
2441 2731 3.773418 TTACAAGACGGGTTCATTCCA 57.227 42.857 0.00 0.00 0.00 3.53
2446 2736 3.992643 TCGATTTTACAAGACGGGTTCA 58.007 40.909 0.00 0.00 0.00 3.18
2458 2748 4.168760 AGCAGCAGCAAATTCGATTTTAC 58.831 39.130 3.17 0.48 45.49 2.01
2459 2749 4.439305 AGCAGCAGCAAATTCGATTTTA 57.561 36.364 3.17 0.00 45.49 1.52
2460 2750 3.308438 AGCAGCAGCAAATTCGATTTT 57.692 38.095 3.17 0.00 45.49 1.82
2461 2751 4.644103 ATAGCAGCAGCAAATTCGATTT 57.356 36.364 3.17 0.00 45.49 2.17
2462 2752 4.644103 AATAGCAGCAGCAAATTCGATT 57.356 36.364 3.17 0.00 45.49 3.34
2464 2754 4.496341 GCTTAATAGCAGCAGCAAATTCGA 60.496 41.667 3.17 0.00 46.95 3.71
2766 3165 5.837829 AGAACATAATTAAAAGCAGGGGGA 58.162 37.500 0.00 0.00 0.00 4.81
2778 3177 9.295825 CACTTGGGGCATATAAGAACATAATTA 57.704 33.333 0.00 0.00 0.00 1.40
2826 3231 2.354203 CCTCAGCTAGGTTGTCCAACTC 60.354 54.545 9.79 1.27 40.94 3.01
2855 3260 2.154854 AGGACGATGCATATGAACCG 57.845 50.000 6.97 0.00 0.00 4.44
2877 3282 3.133362 CAGCAATATTGATGCCCAGGTTT 59.867 43.478 19.80 0.00 44.91 3.27
3011 3424 2.747396 TGCATGCAATTTTCTGGTCC 57.253 45.000 20.30 0.00 0.00 4.46
3013 3426 3.965379 TCATGCATGCAATTTTCTGGT 57.035 38.095 26.68 0.80 0.00 4.00
3072 3488 2.809696 ACGGCGCAAAGTTAATAACTGT 59.190 40.909 10.83 0.00 41.91 3.55
3082 3498 0.951558 AAGAAATGACGGCGCAAAGT 59.048 45.000 10.83 5.82 0.00 2.66
3164 3582 5.127031 ACATAACATTTTCCCTGCCATGTAC 59.873 40.000 0.00 0.00 0.00 2.90
3214 3633 3.994392 GCAGAAACGGAACATTACTGAGA 59.006 43.478 0.00 0.00 0.00 3.27
3229 3648 4.410743 GCCAGGCGCTGCAGAAAC 62.411 66.667 20.43 5.83 0.00 2.78
3431 3852 9.965824 AACTACCAGAATCAAAACAATGTAAAG 57.034 29.630 0.00 0.00 0.00 1.85
3451 3873 7.285858 AGTCTAGTGATAAGTCCATGAACTACC 59.714 40.741 0.00 0.00 0.00 3.18
3452 3874 8.228035 AGTCTAGTGATAAGTCCATGAACTAC 57.772 38.462 0.00 0.00 0.00 2.73
3484 3906 7.015226 CAGAATGGTTCGCAATAGTAAATGA 57.985 36.000 0.00 0.00 34.02 2.57
3518 3945 3.133141 GCCCCAAGCAAATTAACCAAA 57.867 42.857 0.00 0.00 42.97 3.28
3639 4078 8.196771 TGTTGTGAAGAAATTTGCAAGTCTATT 58.803 29.630 0.00 0.00 0.00 1.73
3640 4079 7.715657 TGTTGTGAAGAAATTTGCAAGTCTAT 58.284 30.769 0.00 0.00 0.00 1.98
3645 4084 4.807304 AGCTGTTGTGAAGAAATTTGCAAG 59.193 37.500 0.00 0.00 0.00 4.01
3663 4102 4.588528 TGCTCTCCCAATTTTTAAAGCTGT 59.411 37.500 0.00 0.00 0.00 4.40
3692 4131 2.954989 TGCACTTAACTTGCAATCACCA 59.045 40.909 0.00 0.00 46.90 4.17
3721 4160 8.157183 CCAACTAAAAACACTGTTTACAAAACG 58.843 33.333 7.59 0.00 0.00 3.60
3748 4187 2.878406 TGCAGTTGCCAAACTAGACTTC 59.122 45.455 0.00 0.00 45.07 3.01
3796 4235 7.532571 AGTTAAGAATTAAATGGTGCCGTTAC 58.467 34.615 0.00 0.00 43.05 2.50
3807 4246 9.606631 TTGCCACACAAAAGTTAAGAATTAAAT 57.393 25.926 0.00 0.00 37.56 1.40
3812 4251 7.500141 AGAATTGCCACACAAAAGTTAAGAAT 58.500 30.769 0.00 0.00 42.86 2.40
3860 4300 1.767681 AGAACAGAGGATGATGAGCCC 59.232 52.381 0.00 0.00 0.00 5.19
3870 4310 1.762370 TGCACACAAGAGAACAGAGGA 59.238 47.619 0.00 0.00 0.00 3.71
3884 4324 5.239525 ACCAAAGTAAGAGAATTCTGCACAC 59.760 40.000 14.00 5.43 32.79 3.82
3885 4325 5.376625 ACCAAAGTAAGAGAATTCTGCACA 58.623 37.500 14.00 0.00 32.79 4.57
3975 4417 6.418226 GTGTACGATCTCCATGAATACTTGTC 59.582 42.308 0.00 0.00 0.00 3.18
4011 4453 2.808543 GTTCAGGTAAACACAGCTCTGG 59.191 50.000 1.66 0.00 34.19 3.86
4044 4488 2.127708 AGCGTCCAGGAAATAAGGGAT 58.872 47.619 0.00 0.00 0.00 3.85
4051 4495 6.670027 AGGATAGATATTAGCGTCCAGGAAAT 59.330 38.462 0.00 0.00 0.00 2.17
4052 4496 6.017192 AGGATAGATATTAGCGTCCAGGAAA 58.983 40.000 0.00 0.00 0.00 3.13
4152 4596 9.736023 AGACAAATTCAACTTCTCATGTAAAAC 57.264 29.630 0.00 0.00 0.00 2.43
4162 4606 9.598517 TGCAAAAATAAGACAAATTCAACTTCT 57.401 25.926 0.00 0.00 0.00 2.85
4171 4615 9.606631 TGTTAACCTTGCAAAAATAAGACAAAT 57.393 25.926 0.00 0.00 0.00 2.32
4173 4617 8.035394 TGTGTTAACCTTGCAAAAATAAGACAA 58.965 29.630 17.72 8.10 0.00 3.18
4180 4624 8.187480 GGAAAAATGTGTTAACCTTGCAAAAAT 58.813 29.630 0.00 0.00 0.00 1.82
4181 4625 7.391833 AGGAAAAATGTGTTAACCTTGCAAAAA 59.608 29.630 0.00 0.00 0.00 1.94
4225 4669 2.746472 GCGCATACTCCCTTTCCTGAAT 60.746 50.000 0.30 0.00 0.00 2.57
4414 4858 4.449131 TCATTGAAAAATGCAGTTGCCAA 58.551 34.783 13.86 13.86 41.18 4.52
4467 4911 0.674581 TGGCTTCCTGCATCAGTTCG 60.675 55.000 0.00 0.00 45.15 3.95
4575 5019 3.545124 AAATCGAGCACCGCCACCA 62.545 57.895 0.00 0.00 38.37 4.17
4578 5022 2.745884 CCAAATCGAGCACCGCCA 60.746 61.111 0.00 0.00 38.37 5.69
4743 5199 4.839668 TCCATCGGTTTCGTTTCAATTT 57.160 36.364 0.00 0.00 37.69 1.82
4752 5208 1.229428 CCATCCATCCATCGGTTTCG 58.771 55.000 0.00 0.00 37.82 3.46
4864 5320 2.331451 GCGGTGACAACAACCAGC 59.669 61.111 0.00 0.00 0.00 4.85
4920 5376 1.833787 TAGCCCACCCGGACTTTGAC 61.834 60.000 0.73 0.00 0.00 3.18
4960 5416 9.912634 ACAATAAACATCATCCAAAAACTACAG 57.087 29.630 0.00 0.00 0.00 2.74
5000 5456 1.106351 AAGCGCAACAATGACCACCA 61.106 50.000 11.47 0.00 0.00 4.17
5036 5492 7.398332 AGCAGAAAAGGATCCAATCACTATTTT 59.602 33.333 15.82 9.05 0.00 1.82
5037 5493 6.894103 AGCAGAAAAGGATCCAATCACTATTT 59.106 34.615 15.82 0.00 0.00 1.40
5068 5525 3.490890 GCAGGCAAGCGGTAGAAG 58.509 61.111 0.00 0.00 0.00 2.85
5112 5569 4.696899 GGGGGAGTAAAATTTTCGACAG 57.303 45.455 6.72 0.00 0.00 3.51
5139 5649 8.746922 AATGCAAATGTATGTCAAGTACTTTG 57.253 30.769 5.07 2.14 38.17 2.77
5143 5653 7.807433 TGTGAAATGCAAATGTATGTCAAGTAC 59.193 33.333 6.01 0.00 36.40 2.73
5181 5708 6.135290 ACCACAAATATGAATCCAATGACG 57.865 37.500 0.00 0.00 0.00 4.35
5211 5738 0.036010 ATACATGCGGCCAGGCTATC 60.036 55.000 12.43 1.11 0.00 2.08
5220 5747 0.944311 CGAGTACCCATACATGCGGC 60.944 60.000 0.00 0.00 33.30 6.53
5222 5749 0.032130 AGCGAGTACCCATACATGCG 59.968 55.000 0.00 0.00 38.21 4.73
5251 5778 9.886132 ACTAACCAAGTTATCTTTTCGTGATAT 57.114 29.630 0.00 0.00 33.35 1.63
5252 5779 9.715121 AACTAACCAAGTTATCTTTTCGTGATA 57.285 29.630 0.00 0.00 46.85 2.15
5253 5780 8.617290 AACTAACCAAGTTATCTTTTCGTGAT 57.383 30.769 0.00 0.00 46.85 3.06
5270 5797 8.700439 AGCTTCTTGGTAAATAAAACTAACCA 57.300 30.769 0.00 0.00 38.42 3.67
5271 5798 9.406828 CAAGCTTCTTGGTAAATAAAACTAACC 57.593 33.333 0.00 0.00 0.00 2.85
5281 5808 7.154656 GGAACAAATCAAGCTTCTTGGTAAAT 58.845 34.615 14.01 0.00 0.00 1.40
5322 5866 2.579207 TAGGTTGTAGATGTCGCAGC 57.421 50.000 0.00 0.00 0.00 5.25
5323 5867 4.046938 ACATAGGTTGTAGATGTCGCAG 57.953 45.455 0.00 0.00 36.57 5.18
5324 5868 4.465632 AACATAGGTTGTAGATGTCGCA 57.534 40.909 0.00 0.00 37.68 5.10
5326 5870 7.033791 ACTGTTAACATAGGTTGTAGATGTCG 58.966 38.462 9.13 0.00 37.68 4.35
5327 5871 7.491696 GGACTGTTAACATAGGTTGTAGATGTC 59.508 40.741 9.13 7.83 37.68 3.06
5328 5872 7.038587 TGGACTGTTAACATAGGTTGTAGATGT 60.039 37.037 9.13 0.00 37.68 3.06
5329 5873 7.327975 TGGACTGTTAACATAGGTTGTAGATG 58.672 38.462 9.13 0.00 37.68 2.90
5330 5874 7.490657 TGGACTGTTAACATAGGTTGTAGAT 57.509 36.000 9.13 0.00 37.68 1.98
5331 5875 6.921486 TGGACTGTTAACATAGGTTGTAGA 57.079 37.500 9.13 0.00 37.68 2.59
5362 5918 7.672390 CAAACAGTTTGTTCAAGAATGTCTTGC 60.672 37.037 16.77 1.86 42.34 4.01
5363 5919 7.669098 CAAACAGTTTGTTCAAGAATGTCTTG 58.331 34.615 16.77 11.04 42.60 3.02
5364 5920 6.311200 GCAAACAGTTTGTTCAAGAATGTCTT 59.689 34.615 23.96 0.00 40.14 3.01
5367 5923 4.869861 GGCAAACAGTTTGTTCAAGAATGT 59.130 37.500 23.96 0.00 40.14 2.71
5411 5985 7.201741 GGTTATTGAGCAAACTAAAGAGATCCC 60.202 40.741 0.00 0.00 0.00 3.85
5417 5991 6.483974 TCAACGGTTATTGAGCAAACTAAAGA 59.516 34.615 0.00 0.00 33.62 2.52
5429 6060 3.695830 AGGAGCTTCAACGGTTATTGA 57.304 42.857 0.00 0.00 36.80 2.57
5435 6066 2.488153 GCAAATTAGGAGCTTCAACGGT 59.512 45.455 0.00 0.00 0.00 4.83
5548 6187 2.267961 GTTGCCCTACCTCCCGTG 59.732 66.667 0.00 0.00 0.00 4.94
5549 6188 3.387947 CGTTGCCCTACCTCCCGT 61.388 66.667 0.00 0.00 0.00 5.28
5550 6189 4.832608 GCGTTGCCCTACCTCCCG 62.833 72.222 0.00 0.00 0.00 5.14
5551 6190 4.832608 CGCGTTGCCCTACCTCCC 62.833 72.222 0.00 0.00 0.00 4.30
5552 6191 3.766691 TCGCGTTGCCCTACCTCC 61.767 66.667 5.77 0.00 0.00 4.30
5553 6192 1.660560 TAGTCGCGTTGCCCTACCTC 61.661 60.000 5.77 0.00 0.00 3.85
5554 6193 1.041447 ATAGTCGCGTTGCCCTACCT 61.041 55.000 5.77 0.00 0.00 3.08
5555 6194 0.596859 GATAGTCGCGTTGCCCTACC 60.597 60.000 5.77 0.00 0.00 3.18
5556 6195 0.933509 CGATAGTCGCGTTGCCCTAC 60.934 60.000 5.77 0.00 31.14 3.18
5557 6196 1.357690 CGATAGTCGCGTTGCCCTA 59.642 57.895 5.77 0.41 31.14 3.53
5558 6197 2.104331 CGATAGTCGCGTTGCCCT 59.896 61.111 5.77 0.00 31.14 5.19
5559 6198 2.960129 CCGATAGTCGCGTTGCCC 60.960 66.667 5.77 0.00 38.82 5.36
5565 6204 4.647615 CCTGGGCCGATAGTCGCG 62.648 72.222 0.00 0.00 38.82 5.87
5571 6210 0.179020 CATCTTTGCCTGGGCCGATA 60.179 55.000 9.28 0.00 41.09 2.92
5576 6215 1.134907 CAATGTCATCTTTGCCTGGGC 60.135 52.381 4.43 4.43 42.35 5.36
5579 6218 3.087031 ACCTCAATGTCATCTTTGCCTG 58.913 45.455 0.00 0.00 0.00 4.85
5591 6230 3.587061 TGGAAGTGGTATCACCTCAATGT 59.413 43.478 7.05 0.00 44.64 2.71
5599 6238 2.754946 TCCGTTGGAAGTGGTATCAC 57.245 50.000 0.00 0.00 43.93 3.06
5611 6251 0.680921 AGGGCATGACAATCCGTTGG 60.681 55.000 0.00 0.00 39.70 3.77
5635 6275 7.168972 CCTTGATGAGAACTCGAAGATGTAATC 59.831 40.741 0.00 0.00 46.04 1.75
5636 6276 6.983307 CCTTGATGAGAACTCGAAGATGTAAT 59.017 38.462 0.00 0.00 33.89 1.89
5637 6277 6.071334 ACCTTGATGAGAACTCGAAGATGTAA 60.071 38.462 0.00 0.00 33.89 2.41
5638 6278 5.419155 ACCTTGATGAGAACTCGAAGATGTA 59.581 40.000 0.00 0.00 33.89 2.29
5639 6279 4.221703 ACCTTGATGAGAACTCGAAGATGT 59.778 41.667 0.00 0.00 33.89 3.06
5640 6280 4.565962 CACCTTGATGAGAACTCGAAGATG 59.434 45.833 0.00 0.00 33.89 2.90
5641 6281 4.221703 ACACCTTGATGAGAACTCGAAGAT 59.778 41.667 0.00 0.00 33.89 2.40
5642 6282 3.574396 ACACCTTGATGAGAACTCGAAGA 59.426 43.478 0.00 0.00 0.00 2.87
5643 6283 3.919216 ACACCTTGATGAGAACTCGAAG 58.081 45.455 0.00 0.00 0.00 3.79
5644 6284 4.336889 AACACCTTGATGAGAACTCGAA 57.663 40.909 0.00 0.00 0.00 3.71
5645 6285 4.618460 GCTAACACCTTGATGAGAACTCGA 60.618 45.833 0.00 0.00 0.00 4.04
5646 6286 3.614616 GCTAACACCTTGATGAGAACTCG 59.385 47.826 0.00 0.00 0.00 4.18
5647 6287 4.569943 TGCTAACACCTTGATGAGAACTC 58.430 43.478 0.00 0.00 0.00 3.01
5648 6288 4.284490 TCTGCTAACACCTTGATGAGAACT 59.716 41.667 0.00 0.00 0.00 3.01
5649 6289 4.569943 TCTGCTAACACCTTGATGAGAAC 58.430 43.478 0.00 0.00 0.00 3.01
5650 6290 4.890158 TCTGCTAACACCTTGATGAGAA 57.110 40.909 0.00 0.00 0.00 2.87
5651 6291 4.890158 TTCTGCTAACACCTTGATGAGA 57.110 40.909 0.00 0.00 0.00 3.27
5652 6292 4.756642 TGTTTCTGCTAACACCTTGATGAG 59.243 41.667 0.00 0.00 33.31 2.90
5653 6293 4.713553 TGTTTCTGCTAACACCTTGATGA 58.286 39.130 0.00 0.00 33.31 2.92
5654 6294 5.437289 TTGTTTCTGCTAACACCTTGATG 57.563 39.130 0.00 0.00 37.72 3.07
5655 6295 5.594317 AGTTTGTTTCTGCTAACACCTTGAT 59.406 36.000 0.00 0.00 37.72 2.57
5656 6296 4.947388 AGTTTGTTTCTGCTAACACCTTGA 59.053 37.500 0.00 0.00 37.72 3.02
5657 6297 5.248870 AGTTTGTTTCTGCTAACACCTTG 57.751 39.130 0.00 0.00 37.72 3.61
5658 6298 5.914898 AAGTTTGTTTCTGCTAACACCTT 57.085 34.783 0.00 0.00 37.72 3.50
5659 6299 5.007332 CGTAAGTTTGTTTCTGCTAACACCT 59.993 40.000 0.00 0.00 37.72 4.00
5660 6300 5.202640 CGTAAGTTTGTTTCTGCTAACACC 58.797 41.667 0.00 0.00 37.72 4.16
5661 6301 4.669283 GCGTAAGTTTGTTTCTGCTAACAC 59.331 41.667 0.00 0.00 37.44 3.32
5662 6302 4.260866 GGCGTAAGTTTGTTTCTGCTAACA 60.261 41.667 0.00 0.00 41.68 2.41
5663 6303 4.216731 GGCGTAAGTTTGTTTCTGCTAAC 58.783 43.478 0.00 0.00 41.68 2.34
5664 6304 3.251487 GGGCGTAAGTTTGTTTCTGCTAA 59.749 43.478 0.00 0.00 41.68 3.09
5665 6305 2.809696 GGGCGTAAGTTTGTTTCTGCTA 59.190 45.455 0.00 0.00 41.68 3.49
5666 6306 1.607148 GGGCGTAAGTTTGTTTCTGCT 59.393 47.619 0.00 0.00 41.68 4.24
5667 6307 1.607148 AGGGCGTAAGTTTGTTTCTGC 59.393 47.619 0.00 0.00 41.68 4.26
5668 6308 3.314080 TGAAGGGCGTAAGTTTGTTTCTG 59.686 43.478 0.00 0.00 41.68 3.02
5669 6309 3.314357 GTGAAGGGCGTAAGTTTGTTTCT 59.686 43.478 0.00 0.00 41.68 2.52
5670 6310 3.065648 TGTGAAGGGCGTAAGTTTGTTTC 59.934 43.478 0.00 0.00 41.68 2.78
5671 6311 3.018149 TGTGAAGGGCGTAAGTTTGTTT 58.982 40.909 0.00 0.00 41.68 2.83
5672 6312 2.645802 TGTGAAGGGCGTAAGTTTGTT 58.354 42.857 0.00 0.00 41.68 2.83
5673 6313 2.335316 TGTGAAGGGCGTAAGTTTGT 57.665 45.000 0.00 0.00 41.68 2.83
5674 6314 3.502211 AGAATGTGAAGGGCGTAAGTTTG 59.498 43.478 0.00 0.00 41.68 2.93
5675 6315 3.502211 CAGAATGTGAAGGGCGTAAGTTT 59.498 43.478 0.00 0.00 41.68 2.66
5676 6316 3.074412 CAGAATGTGAAGGGCGTAAGTT 58.926 45.455 0.00 0.00 41.68 2.66
5677 6317 2.615493 CCAGAATGTGAAGGGCGTAAGT 60.615 50.000 0.00 0.00 41.68 2.24
5678 6318 2.009774 CCAGAATGTGAAGGGCGTAAG 58.990 52.381 0.00 0.00 43.44 2.34
5679 6319 1.349688 ACCAGAATGTGAAGGGCGTAA 59.650 47.619 0.00 0.00 0.00 3.18
5680 6320 0.981183 ACCAGAATGTGAAGGGCGTA 59.019 50.000 0.00 0.00 0.00 4.42
5681 6321 0.321653 GACCAGAATGTGAAGGGCGT 60.322 55.000 0.00 0.00 0.00 5.68
5682 6322 2.471255 GACCAGAATGTGAAGGGCG 58.529 57.895 0.00 0.00 0.00 6.13
5683 6323 0.321653 ACGACCAGAATGTGAAGGGC 60.322 55.000 0.00 0.00 0.00 5.19
5684 6324 2.185004 AACGACCAGAATGTGAAGGG 57.815 50.000 0.00 0.00 0.00 3.95
5685 6325 2.226437 CCAAACGACCAGAATGTGAAGG 59.774 50.000 0.00 0.00 0.00 3.46
5686 6326 2.226437 CCCAAACGACCAGAATGTGAAG 59.774 50.000 0.00 0.00 0.00 3.02
5687 6327 2.158740 TCCCAAACGACCAGAATGTGAA 60.159 45.455 0.00 0.00 0.00 3.18
5688 6328 1.418264 TCCCAAACGACCAGAATGTGA 59.582 47.619 0.00 0.00 0.00 3.58
5689 6329 1.890876 TCCCAAACGACCAGAATGTG 58.109 50.000 0.00 0.00 0.00 3.21
5690 6330 2.879103 ATCCCAAACGACCAGAATGT 57.121 45.000 0.00 0.00 0.00 2.71
5691 6331 2.607635 CGTATCCCAAACGACCAGAATG 59.392 50.000 0.00 0.00 42.90 2.67
5692 6332 2.498481 TCGTATCCCAAACGACCAGAAT 59.502 45.455 0.00 0.00 43.90 2.40
5693 6333 1.894466 TCGTATCCCAAACGACCAGAA 59.106 47.619 0.00 0.00 43.90 3.02
5694 6334 1.475280 CTCGTATCCCAAACGACCAGA 59.525 52.381 0.00 0.00 43.90 3.86
5695 6335 1.470979 CCTCGTATCCCAAACGACCAG 60.471 57.143 0.00 0.00 43.90 4.00
5696 6336 0.533491 CCTCGTATCCCAAACGACCA 59.467 55.000 0.00 0.00 43.90 4.02
5697 6337 0.179092 CCCTCGTATCCCAAACGACC 60.179 60.000 0.00 0.00 43.90 4.79
5698 6338 0.533951 ACCCTCGTATCCCAAACGAC 59.466 55.000 0.00 0.00 43.90 4.34
5699 6339 0.819582 GACCCTCGTATCCCAAACGA 59.180 55.000 0.00 0.00 46.35 3.85
5700 6340 0.822164 AGACCCTCGTATCCCAAACG 59.178 55.000 0.00 0.00 41.64 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.