Multiple sequence alignment - TraesCS5B01G463100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G463100 chr5B 100.000 2228 0 0 1 2228 638398824 638396597 0.000000e+00 4115.0
1 TraesCS5B01G463100 chr5B 88.564 1233 116 15 660 1883 638353838 638352622 0.000000e+00 1472.0
2 TraesCS5B01G463100 chr5B 87.030 1303 130 24 592 1883 638345614 638344340 0.000000e+00 1434.0
3 TraesCS5B01G463100 chr5B 87.592 1217 121 18 592 1805 638337320 638336131 0.000000e+00 1384.0
4 TraesCS5B01G463100 chr5B 88.045 987 101 11 906 1883 638364032 638363054 0.000000e+00 1153.0
5 TraesCS5B01G463100 chr5B 100.000 255 0 0 2547 2801 638396278 638396024 3.270000e-129 472.0
6 TraesCS5B01G463100 chr5D 94.543 1521 71 8 588 2107 507836307 507834798 0.000000e+00 2338.0
7 TraesCS5B01G463100 chr5D 90.637 1303 111 9 588 1882 507772769 507771470 0.000000e+00 1720.0
8 TraesCS5B01G463100 chr5D 86.629 1249 116 27 650 1882 507776108 507774895 0.000000e+00 1334.0
9 TraesCS5B01G463100 chr5D 91.496 341 21 5 28 362 507836652 507836314 1.970000e-126 462.0
10 TraesCS5B01G463100 chr5D 92.760 221 10 5 2586 2801 480747029 480746810 5.820000e-82 315.0
11 TraesCS5B01G463100 chr5D 95.294 85 4 0 2074 2158 507789300 507789216 4.870000e-28 135.0
12 TraesCS5B01G463100 chr5D 98.462 65 1 0 2094 2158 507834781 507834717 6.340000e-22 115.0
13 TraesCS5B01G463100 chr5D 79.825 114 10 9 261 362 507772888 507772776 1.390000e-08 71.3
14 TraesCS5B01G463100 chr5A 87.975 1264 132 9 544 1806 635409227 635407983 0.000000e+00 1474.0
15 TraesCS5B01G463100 chr5A 86.642 1340 126 15 818 2148 635415648 635414353 0.000000e+00 1434.0
16 TraesCS5B01G463100 chr5A 85.023 1282 135 30 626 1882 635411854 635410605 0.000000e+00 1251.0
17 TraesCS5B01G463100 chr5A 88.418 354 25 11 22 362 635416206 635415856 2.010000e-111 412.0
18 TraesCS5B01G463100 chr5A 91.781 219 16 2 544 761 635415865 635415648 1.260000e-78 303.0
19 TraesCS5B01G463100 chr6B 93.237 207 14 0 2595 2801 174530232 174530026 3.510000e-79 305.0
20 TraesCS5B01G463100 chr6B 85.897 156 19 3 365 518 472614830 472614676 2.230000e-36 163.0
21 TraesCS5B01G463100 chr6B 84.615 156 20 4 365 518 710781490 710781643 4.830000e-33 152.0
22 TraesCS5B01G463100 chr4B 92.788 208 15 0 2594 2801 665465325 665465118 4.530000e-78 302.0
23 TraesCS5B01G463100 chr2B 91.743 218 14 3 2584 2801 136839364 136839151 1.630000e-77 300.0
24 TraesCS5B01G463100 chr1B 91.705 217 17 1 2586 2801 195296163 195295947 1.630000e-77 300.0
25 TraesCS5B01G463100 chr3B 92.754 207 13 2 2595 2801 206169791 206169995 5.870000e-77 298.0
26 TraesCS5B01G463100 chr3B 85.621 153 17 4 365 515 532190560 532190411 3.740000e-34 156.0
27 TraesCS5B01G463100 chr7B 91.981 212 15 2 2591 2801 84295044 84294834 2.110000e-76 296.0
28 TraesCS5B01G463100 chr6A 91.204 216 18 1 2587 2801 209566630 209566415 2.730000e-75 292.0
29 TraesCS5B01G463100 chr1D 90.541 222 18 3 2582 2801 277874671 277874451 9.810000e-75 291.0
30 TraesCS5B01G463100 chr3A 84.416 154 22 2 365 516 454362460 454362307 1.740000e-32 150.0
31 TraesCS5B01G463100 chr2D 81.379 145 23 4 374 515 492995432 492995575 6.340000e-22 115.0
32 TraesCS5B01G463100 chr2D 80.374 107 17 4 365 469 50342023 50342127 8.320000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G463100 chr5B 638396024 638398824 2800 True 2293.500000 4115 100.000000 1 2801 2 chr5B.!!$R5 2800
1 TraesCS5B01G463100 chr5B 638352622 638353838 1216 True 1472.000000 1472 88.564000 660 1883 1 chr5B.!!$R3 1223
2 TraesCS5B01G463100 chr5B 638344340 638345614 1274 True 1434.000000 1434 87.030000 592 1883 1 chr5B.!!$R2 1291
3 TraesCS5B01G463100 chr5B 638336131 638337320 1189 True 1384.000000 1384 87.592000 592 1805 1 chr5B.!!$R1 1213
4 TraesCS5B01G463100 chr5B 638363054 638364032 978 True 1153.000000 1153 88.045000 906 1883 1 chr5B.!!$R4 977
5 TraesCS5B01G463100 chr5D 507771470 507776108 4638 True 1041.766667 1720 85.697000 261 1882 3 chr5D.!!$R3 1621
6 TraesCS5B01G463100 chr5D 507834717 507836652 1935 True 971.666667 2338 94.833667 28 2158 3 chr5D.!!$R4 2130
7 TraesCS5B01G463100 chr5A 635407983 635416206 8223 True 974.800000 1474 87.967800 22 2148 5 chr5A.!!$R1 2126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 3379 0.037326 ATGCTTTTCTCGTCCGAGCA 60.037 50.0 11.71 7.35 46.11 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 4991 0.393808 AATGTGAGCCCGGCGTATTT 60.394 50.0 6.01 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.755409 AAACATAGATACTCACCACACCA 57.245 39.130 0.00 0.00 0.00 4.17
25 26 4.093743 ACATAGATACTCACCACACCACA 58.906 43.478 0.00 0.00 0.00 4.17
26 27 4.081642 ACATAGATACTCACCACACCACAC 60.082 45.833 0.00 0.00 0.00 3.82
33 34 0.455410 CACCACACCACACACAAAGG 59.545 55.000 0.00 0.00 0.00 3.11
46 47 6.293407 CCACACACAAAGGAACTAACTATGTG 60.293 42.308 0.00 0.00 38.49 3.21
49 50 7.719633 ACACACAAAGGAACTAACTATGTGAAT 59.280 33.333 9.69 0.00 38.49 2.57
176 177 4.729868 ACAATGAGAGGTTTGGCTTAAGT 58.270 39.130 4.02 0.00 0.00 2.24
204 205 2.738314 GGGACACTGCAAAAATCAATGC 59.262 45.455 0.00 0.00 42.86 3.56
210 211 3.255725 CTGCAAAAATCAATGCCGATGT 58.744 40.909 0.00 0.00 41.87 3.06
239 240 2.180204 CGTGGATTCGGGTGATGGC 61.180 63.158 0.00 0.00 0.00 4.40
286 3247 4.808895 CGATCATGTTATGTTTCTTCCGGA 59.191 41.667 0.00 0.00 0.00 5.14
287 3248 5.050769 CGATCATGTTATGTTTCTTCCGGAG 60.051 44.000 3.34 0.00 0.00 4.63
288 3249 5.160607 TCATGTTATGTTTCTTCCGGAGT 57.839 39.130 3.34 0.00 0.00 3.85
289 3250 6.288941 TCATGTTATGTTTCTTCCGGAGTA 57.711 37.500 3.34 0.00 0.00 2.59
290 3251 6.103997 TCATGTTATGTTTCTTCCGGAGTAC 58.896 40.000 3.34 2.29 0.00 2.73
307 3281 5.221130 GGAGTACTATTTGTCGTATGCTCC 58.779 45.833 0.00 0.00 33.17 4.70
310 3284 2.223971 ACTATTTGTCGTATGCTCCGGG 60.224 50.000 0.00 0.00 0.00 5.73
316 3290 0.250424 TCGTATGCTCCGGGTCGATA 60.250 55.000 0.00 0.00 0.00 2.92
332 3311 4.547532 GTCGATATTGCTAGAATGGACGT 58.452 43.478 0.00 0.00 0.00 4.34
333 3312 4.383052 GTCGATATTGCTAGAATGGACGTG 59.617 45.833 0.00 0.00 0.00 4.49
362 3341 4.433615 TGAGCATGTCTCCGTTTCTATTC 58.566 43.478 12.62 0.00 41.18 1.75
363 3342 4.081697 TGAGCATGTCTCCGTTTCTATTCA 60.082 41.667 12.62 0.00 41.18 2.57
365 3344 5.245531 AGCATGTCTCCGTTTCTATTCAAA 58.754 37.500 0.00 0.00 0.00 2.69
368 3347 7.029563 GCATGTCTCCGTTTCTATTCAAAATT 58.970 34.615 0.00 0.00 0.00 1.82
369 3348 7.008628 GCATGTCTCCGTTTCTATTCAAAATTG 59.991 37.037 0.00 0.00 0.00 2.32
370 3349 6.378582 TGTCTCCGTTTCTATTCAAAATTGC 58.621 36.000 0.00 0.00 0.00 3.56
371 3350 6.206634 TGTCTCCGTTTCTATTCAAAATTGCT 59.793 34.615 0.00 0.00 0.00 3.91
372 3351 6.743172 GTCTCCGTTTCTATTCAAAATTGCTC 59.257 38.462 0.00 0.00 0.00 4.26
373 3352 6.655003 TCTCCGTTTCTATTCAAAATTGCTCT 59.345 34.615 0.00 0.00 0.00 4.09
374 3353 6.611381 TCCGTTTCTATTCAAAATTGCTCTG 58.389 36.000 0.00 0.00 0.00 3.35
375 3354 5.287035 CCGTTTCTATTCAAAATTGCTCTGC 59.713 40.000 0.00 0.00 0.00 4.26
376 3355 5.858049 CGTTTCTATTCAAAATTGCTCTGCA 59.142 36.000 0.00 0.00 36.47 4.41
377 3356 6.529125 CGTTTCTATTCAAAATTGCTCTGCAT 59.471 34.615 0.00 0.00 38.76 3.96
378 3357 7.697710 CGTTTCTATTCAAAATTGCTCTGCATA 59.302 33.333 0.00 0.00 38.76 3.14
379 3358 8.801913 GTTTCTATTCAAAATTGCTCTGCATAC 58.198 33.333 0.00 0.00 38.76 2.39
380 3359 6.718388 TCTATTCAAAATTGCTCTGCATACG 58.282 36.000 0.00 0.00 38.76 3.06
381 3360 5.565592 ATTCAAAATTGCTCTGCATACGA 57.434 34.783 0.00 0.00 38.76 3.43
382 3361 5.565592 TTCAAAATTGCTCTGCATACGAT 57.434 34.783 0.00 0.00 38.76 3.73
383 3362 4.912214 TCAAAATTGCTCTGCATACGATG 58.088 39.130 0.00 0.00 38.76 3.84
395 3374 3.843426 CATACGATGCTTTTCTCGTCC 57.157 47.619 0.37 0.00 44.21 4.79
396 3375 1.904144 TACGATGCTTTTCTCGTCCG 58.096 50.000 0.37 0.00 44.21 4.79
397 3376 0.242825 ACGATGCTTTTCTCGTCCGA 59.757 50.000 0.00 0.00 44.21 4.55
398 3377 0.917259 CGATGCTTTTCTCGTCCGAG 59.083 55.000 10.36 10.36 43.21 4.63
399 3378 0.647925 GATGCTTTTCTCGTCCGAGC 59.352 55.000 11.71 1.66 41.71 5.03
400 3379 0.037326 ATGCTTTTCTCGTCCGAGCA 60.037 50.000 11.71 7.35 46.11 4.26
401 3380 0.667487 TGCTTTTCTCGTCCGAGCAG 60.667 55.000 11.71 8.48 41.71 4.24
402 3381 1.960994 GCTTTTCTCGTCCGAGCAGC 61.961 60.000 11.71 13.69 41.71 5.25
403 3382 0.667487 CTTTTCTCGTCCGAGCAGCA 60.667 55.000 11.71 0.00 41.71 4.41
404 3383 0.037326 TTTTCTCGTCCGAGCAGCAT 60.037 50.000 11.71 0.00 41.71 3.79
405 3384 0.737367 TTTCTCGTCCGAGCAGCATG 60.737 55.000 11.71 0.00 41.71 4.06
406 3385 1.595093 TTCTCGTCCGAGCAGCATGA 61.595 55.000 11.71 0.00 41.71 3.07
407 3386 1.875813 CTCGTCCGAGCAGCATGAC 60.876 63.158 3.49 0.00 38.34 3.06
408 3387 2.887568 CGTCCGAGCAGCATGACC 60.888 66.667 0.00 0.00 39.69 4.02
409 3388 2.265739 GTCCGAGCAGCATGACCA 59.734 61.111 0.00 0.00 39.69 4.02
410 3389 2.103042 GTCCGAGCAGCATGACCAC 61.103 63.158 0.00 0.00 39.69 4.16
411 3390 2.046988 CCGAGCAGCATGACCACA 60.047 61.111 0.00 0.00 39.69 4.17
412 3391 2.104859 CCGAGCAGCATGACCACAG 61.105 63.158 0.00 0.00 39.69 3.66
413 3392 1.079612 CGAGCAGCATGACCACAGA 60.080 57.895 0.00 0.00 39.69 3.41
414 3393 1.082679 CGAGCAGCATGACCACAGAG 61.083 60.000 0.00 0.00 39.69 3.35
415 3394 0.743701 GAGCAGCATGACCACAGAGG 60.744 60.000 0.00 0.00 39.69 3.69
416 3395 1.196766 AGCAGCATGACCACAGAGGA 61.197 55.000 0.00 0.00 39.69 3.71
417 3396 0.321919 GCAGCATGACCACAGAGGAA 60.322 55.000 0.00 0.00 39.69 3.36
418 3397 1.883638 GCAGCATGACCACAGAGGAAA 60.884 52.381 0.00 0.00 39.69 3.13
419 3398 2.719739 CAGCATGACCACAGAGGAAAT 58.280 47.619 0.00 0.00 39.69 2.17
420 3399 2.681848 CAGCATGACCACAGAGGAAATC 59.318 50.000 0.00 0.00 39.69 2.17
421 3400 2.306805 AGCATGACCACAGAGGAAATCA 59.693 45.455 0.00 0.00 41.22 2.57
422 3401 3.053842 AGCATGACCACAGAGGAAATCAT 60.054 43.478 0.00 0.00 41.22 2.45
423 3402 3.314635 GCATGACCACAGAGGAAATCATC 59.685 47.826 0.00 0.00 41.22 2.92
424 3403 4.778579 CATGACCACAGAGGAAATCATCT 58.221 43.478 0.00 0.00 41.22 2.90
425 3404 4.478206 TGACCACAGAGGAAATCATCTC 57.522 45.455 0.00 0.00 41.22 2.75
426 3405 3.840078 TGACCACAGAGGAAATCATCTCA 59.160 43.478 0.00 0.00 41.22 3.27
427 3406 4.286808 TGACCACAGAGGAAATCATCTCAA 59.713 41.667 0.00 0.00 41.22 3.02
428 3407 5.221904 TGACCACAGAGGAAATCATCTCAAA 60.222 40.000 0.00 0.00 41.22 2.69
429 3408 5.634118 ACCACAGAGGAAATCATCTCAAAA 58.366 37.500 0.00 0.00 41.22 2.44
430 3409 5.474876 ACCACAGAGGAAATCATCTCAAAAC 59.525 40.000 0.00 0.00 41.22 2.43
431 3410 5.391310 CCACAGAGGAAATCATCTCAAAACG 60.391 44.000 0.00 0.00 41.22 3.60
432 3411 4.154918 ACAGAGGAAATCATCTCAAAACGC 59.845 41.667 0.00 0.00 34.42 4.84
433 3412 4.394300 CAGAGGAAATCATCTCAAAACGCT 59.606 41.667 0.00 0.00 34.42 5.07
434 3413 5.582269 CAGAGGAAATCATCTCAAAACGCTA 59.418 40.000 0.00 0.00 34.42 4.26
435 3414 5.582665 AGAGGAAATCATCTCAAAACGCTAC 59.417 40.000 0.00 0.00 30.23 3.58
436 3415 4.330074 AGGAAATCATCTCAAAACGCTACG 59.670 41.667 0.00 0.00 0.00 3.51
437 3416 4.494199 GGAAATCATCTCAAAACGCTACGG 60.494 45.833 0.00 0.00 0.00 4.02
438 3417 1.355971 TCATCTCAAAACGCTACGGC 58.644 50.000 0.00 0.00 0.00 5.68
439 3418 0.373716 CATCTCAAAACGCTACGGCC 59.626 55.000 0.00 0.00 34.44 6.13
440 3419 1.082117 ATCTCAAAACGCTACGGCCG 61.082 55.000 26.86 26.86 34.44 6.13
441 3420 3.362851 CTCAAAACGCTACGGCCGC 62.363 63.158 28.58 8.30 34.44 6.53
442 3421 3.718097 CAAAACGCTACGGCCGCA 61.718 61.111 28.58 12.87 34.44 5.69
443 3422 2.973600 AAAACGCTACGGCCGCAA 60.974 55.556 28.58 13.53 34.44 4.85
444 3423 2.544698 AAAACGCTACGGCCGCAAA 61.545 52.632 28.58 10.51 34.44 3.68
445 3424 2.061182 AAAACGCTACGGCCGCAAAA 62.061 50.000 28.58 7.56 34.44 2.44
446 3425 1.858372 AAACGCTACGGCCGCAAAAT 61.858 50.000 28.58 7.96 34.44 1.82
447 3426 2.277247 CGCTACGGCCGCAAAATG 60.277 61.111 28.58 10.12 34.44 2.32
448 3427 2.745785 CGCTACGGCCGCAAAATGA 61.746 57.895 28.58 0.36 34.44 2.57
449 3428 1.504446 GCTACGGCCGCAAAATGAA 59.496 52.632 28.58 0.00 0.00 2.57
450 3429 0.100503 GCTACGGCCGCAAAATGAAT 59.899 50.000 28.58 4.37 0.00 2.57
451 3430 1.469079 GCTACGGCCGCAAAATGAATT 60.469 47.619 28.58 3.48 0.00 2.17
452 3431 2.223386 GCTACGGCCGCAAAATGAATTA 60.223 45.455 28.58 4.68 0.00 1.40
453 3432 3.550030 GCTACGGCCGCAAAATGAATTAT 60.550 43.478 28.58 2.60 0.00 1.28
454 3433 3.078594 ACGGCCGCAAAATGAATTATC 57.921 42.857 28.58 0.00 0.00 1.75
455 3434 2.687935 ACGGCCGCAAAATGAATTATCT 59.312 40.909 28.58 0.00 0.00 1.98
456 3435 3.880490 ACGGCCGCAAAATGAATTATCTA 59.120 39.130 28.58 0.00 0.00 1.98
457 3436 4.518970 ACGGCCGCAAAATGAATTATCTAT 59.481 37.500 28.58 0.00 0.00 1.98
458 3437 4.853196 CGGCCGCAAAATGAATTATCTATG 59.147 41.667 14.67 0.00 0.00 2.23
459 3438 5.334802 CGGCCGCAAAATGAATTATCTATGA 60.335 40.000 14.67 0.00 0.00 2.15
460 3439 6.623549 CGGCCGCAAAATGAATTATCTATGAT 60.624 38.462 14.67 0.00 0.00 2.45
461 3440 7.092716 GGCCGCAAAATGAATTATCTATGATT 58.907 34.615 0.00 0.00 0.00 2.57
462 3441 7.062605 GGCCGCAAAATGAATTATCTATGATTG 59.937 37.037 0.00 0.00 0.00 2.67
463 3442 7.596248 GCCGCAAAATGAATTATCTATGATTGT 59.404 33.333 0.00 0.00 0.00 2.71
464 3443 9.121517 CCGCAAAATGAATTATCTATGATTGTC 57.878 33.333 0.00 0.00 0.00 3.18
465 3444 9.888878 CGCAAAATGAATTATCTATGATTGTCT 57.111 29.630 0.00 0.00 0.00 3.41
483 3462 9.671279 TGATTGTCTCTAATCATACAATGTTGT 57.329 29.630 4.41 3.64 41.37 3.32
486 3465 9.936759 TTGTCTCTAATCATACAATGTTGTACA 57.063 29.630 7.69 0.00 45.47 2.90
494 3473 7.289587 TCATACAATGTTGTACATGAACTCG 57.710 36.000 7.69 0.00 45.47 4.18
495 3474 6.871492 TCATACAATGTTGTACATGAACTCGT 59.129 34.615 7.69 0.00 45.47 4.18
496 3475 5.591643 ACAATGTTGTACATGAACTCGTC 57.408 39.130 0.00 0.00 37.97 4.20
497 3476 4.149922 ACAATGTTGTACATGAACTCGTCG 59.850 41.667 0.00 0.00 37.97 5.12
498 3477 3.358707 TGTTGTACATGAACTCGTCGT 57.641 42.857 0.00 0.00 0.00 4.34
499 3478 4.486574 TGTTGTACATGAACTCGTCGTA 57.513 40.909 0.00 0.00 0.00 3.43
500 3479 4.221342 TGTTGTACATGAACTCGTCGTAC 58.779 43.478 0.00 0.00 34.40 3.67
501 3480 3.107868 TGTACATGAACTCGTCGTACG 57.892 47.619 9.53 9.53 44.19 3.67
502 3481 1.836555 GTACATGAACTCGTCGTACGC 59.163 52.381 11.24 4.96 42.21 4.42
503 3482 0.239082 ACATGAACTCGTCGTACGCA 59.761 50.000 11.24 0.66 42.21 5.24
504 3483 1.135489 ACATGAACTCGTCGTACGCAT 60.135 47.619 11.24 3.33 42.21 4.73
505 3484 2.096335 ACATGAACTCGTCGTACGCATA 59.904 45.455 11.24 0.00 42.21 3.14
506 3485 2.447089 TGAACTCGTCGTACGCATAG 57.553 50.000 11.24 9.51 42.21 2.23
507 3486 1.110876 GAACTCGTCGTACGCATAGC 58.889 55.000 11.24 0.00 42.21 2.97
508 3487 0.448990 AACTCGTCGTACGCATAGCA 59.551 50.000 11.24 0.00 42.21 3.49
509 3488 0.448990 ACTCGTCGTACGCATAGCAA 59.551 50.000 11.24 0.00 42.21 3.91
510 3489 1.113253 CTCGTCGTACGCATAGCAAG 58.887 55.000 11.24 0.00 42.21 4.01
511 3490 0.248336 TCGTCGTACGCATAGCAAGG 60.248 55.000 11.24 0.00 42.21 3.61
512 3491 0.524816 CGTCGTACGCATAGCAAGGT 60.525 55.000 11.24 0.00 33.65 3.50
513 3492 1.636988 GTCGTACGCATAGCAAGGTT 58.363 50.000 11.24 0.00 0.00 3.50
514 3493 1.587034 GTCGTACGCATAGCAAGGTTC 59.413 52.381 11.24 0.00 0.00 3.62
515 3494 0.570734 CGTACGCATAGCAAGGTTCG 59.429 55.000 0.52 0.00 0.00 3.95
516 3495 1.636988 GTACGCATAGCAAGGTTCGT 58.363 50.000 0.00 0.00 0.00 3.85
517 3496 1.997606 GTACGCATAGCAAGGTTCGTT 59.002 47.619 0.00 0.00 0.00 3.85
518 3497 1.519408 ACGCATAGCAAGGTTCGTTT 58.481 45.000 0.00 0.00 0.00 3.60
519 3498 1.463444 ACGCATAGCAAGGTTCGTTTC 59.537 47.619 0.00 0.00 0.00 2.78
520 3499 1.732259 CGCATAGCAAGGTTCGTTTCT 59.268 47.619 0.00 0.00 0.00 2.52
521 3500 2.474526 CGCATAGCAAGGTTCGTTTCTG 60.475 50.000 0.00 0.00 0.00 3.02
522 3501 2.742053 GCATAGCAAGGTTCGTTTCTGA 59.258 45.455 0.00 0.00 0.00 3.27
523 3502 3.375299 GCATAGCAAGGTTCGTTTCTGAT 59.625 43.478 0.00 0.00 0.00 2.90
524 3503 4.494855 GCATAGCAAGGTTCGTTTCTGATC 60.495 45.833 0.00 0.00 0.00 2.92
525 3504 2.427506 AGCAAGGTTCGTTTCTGATCC 58.572 47.619 0.00 0.00 0.00 3.36
526 3505 2.039084 AGCAAGGTTCGTTTCTGATCCT 59.961 45.455 0.00 0.00 39.26 3.24
527 3506 3.260884 AGCAAGGTTCGTTTCTGATCCTA 59.739 43.478 0.00 0.00 37.13 2.94
528 3507 4.000988 GCAAGGTTCGTTTCTGATCCTAA 58.999 43.478 0.00 0.00 37.13 2.69
529 3508 4.454504 GCAAGGTTCGTTTCTGATCCTAAA 59.545 41.667 0.00 0.00 37.13 1.85
530 3509 5.048991 GCAAGGTTCGTTTCTGATCCTAAAA 60.049 40.000 0.00 0.00 37.13 1.52
531 3510 6.514376 GCAAGGTTCGTTTCTGATCCTAAAAA 60.514 38.462 0.00 0.00 37.13 1.94
554 3533 7.694388 AAAAAGCAAGGTTCGTTTCTATTTC 57.306 32.000 0.00 0.00 0.00 2.17
555 3534 6.385649 AAAGCAAGGTTCGTTTCTATTTCA 57.614 33.333 0.00 0.00 0.00 2.69
556 3535 6.385649 AAGCAAGGTTCGTTTCTATTTCAA 57.614 33.333 0.00 0.00 0.00 2.69
557 3536 6.575162 AGCAAGGTTCGTTTCTATTTCAAT 57.425 33.333 0.00 0.00 0.00 2.57
558 3537 7.681939 AGCAAGGTTCGTTTCTATTTCAATA 57.318 32.000 0.00 0.00 0.00 1.90
559 3538 8.106247 AGCAAGGTTCGTTTCTATTTCAATAA 57.894 30.769 0.00 0.00 0.00 1.40
560 3539 8.739972 AGCAAGGTTCGTTTCTATTTCAATAAT 58.260 29.630 0.00 0.00 0.00 1.28
561 3540 9.997482 GCAAGGTTCGTTTCTATTTCAATAATA 57.003 29.630 0.00 0.00 0.00 0.98
565 3544 9.447040 GGTTCGTTTCTATTTCAATAATAAGGC 57.553 33.333 0.00 0.00 0.00 4.35
566 3545 9.447040 GTTCGTTTCTATTTCAATAATAAGGCC 57.553 33.333 0.00 0.00 0.00 5.19
567 3546 8.740123 TCGTTTCTATTTCAATAATAAGGCCA 57.260 30.769 5.01 0.00 0.00 5.36
568 3547 8.836413 TCGTTTCTATTTCAATAATAAGGCCAG 58.164 33.333 5.01 0.00 0.00 4.85
569 3548 8.836413 CGTTTCTATTTCAATAATAAGGCCAGA 58.164 33.333 5.01 0.00 0.00 3.86
571 3550 8.924511 TTCTATTTCAATAATAAGGCCAGAGG 57.075 34.615 5.01 0.00 0.00 3.69
597 3605 1.515631 CGGTATACGCAACGATGTCAC 59.484 52.381 0.00 0.00 34.82 3.67
609 3617 6.367421 GCAACGATGTCACTAAAATGTACAA 58.633 36.000 0.00 0.00 0.00 2.41
610 3618 6.853872 GCAACGATGTCACTAAAATGTACAAA 59.146 34.615 0.00 0.00 0.00 2.83
668 3676 2.291209 TTCCTTGGCTGCAAGAATGA 57.709 45.000 0.50 0.00 34.07 2.57
714 3722 2.954318 GGAAATACATGGCATGCTCACT 59.046 45.455 26.70 9.96 0.00 3.41
787 3797 3.498774 AGCCATATCCACAAGATCCAC 57.501 47.619 0.00 0.00 36.33 4.02
923 3935 0.038166 CCACTGCCTTAAGAAGCCCA 59.962 55.000 3.36 0.00 0.00 5.36
980 3998 4.916041 TCCTCATTCTTGGAGAACACAT 57.084 40.909 0.00 0.00 37.00 3.21
1326 4344 2.990967 CGTTGGGCCATGCTTGGT 60.991 61.111 19.05 0.00 45.57 3.67
1572 4590 1.452651 CGTAGACCCGCTCTACCCA 60.453 63.158 11.07 0.00 46.31 4.51
1620 4638 0.107017 CCGATGACCCTGAGGCATTT 60.107 55.000 0.00 0.00 36.11 2.32
1623 4641 1.033746 ATGACCCTGAGGCATTTGCG 61.034 55.000 0.00 0.00 43.26 4.85
1737 4755 0.976641 TTGAGAACCTCGCTGACCAT 59.023 50.000 0.00 0.00 32.35 3.55
1809 4827 2.303022 TCCTGGGAAGTAAGCTGTCTTG 59.697 50.000 8.14 0.00 33.85 3.02
1810 4828 2.079925 CTGGGAAGTAAGCTGTCTTGC 58.920 52.381 12.05 12.05 35.49 4.01
1840 4864 1.067416 GCTGTGAGGTGTGTCGTCA 59.933 57.895 0.00 0.00 38.40 4.35
1845 4869 2.730672 GAGGTGTGTCGTCATGCGC 61.731 63.158 0.00 0.00 41.07 6.09
1846 4870 4.134187 GGTGTGTCGTCATGCGCG 62.134 66.667 0.00 0.00 41.07 6.86
1859 4884 4.166523 GTCATGCGCGTGATATGTACTAT 58.833 43.478 33.05 0.00 0.00 2.12
1943 4968 1.610624 CGCCCCGTATTTGATATGGCT 60.611 52.381 0.00 0.00 40.00 4.75
1966 4991 8.627403 GGCTATTTGATCTGATCATCTGAAAAA 58.373 33.333 20.16 10.49 39.39 1.94
2006 5032 8.020819 CACATTTATTTACACGTGTCTTCCATT 58.979 33.333 27.16 4.03 0.00 3.16
2024 5050 5.120399 TCCATTGACGGTTGAACATATACC 58.880 41.667 0.00 0.00 0.00 2.73
2084 5112 5.197451 TGACGCATAACCAAAATAGGGAAT 58.803 37.500 0.00 0.00 0.00 3.01
2180 5292 8.871686 AAACACATTCAAATTTAGAGGAACAC 57.128 30.769 0.00 0.00 0.00 3.32
2181 5293 7.581213 ACACATTCAAATTTAGAGGAACACA 57.419 32.000 0.00 0.00 0.00 3.72
2182 5294 7.425606 ACACATTCAAATTTAGAGGAACACAC 58.574 34.615 0.00 0.00 0.00 3.82
2186 5298 6.371809 TCAAATTTAGAGGAACACACACAC 57.628 37.500 0.00 0.00 0.00 3.82
2187 5299 5.883115 TCAAATTTAGAGGAACACACACACA 59.117 36.000 0.00 0.00 0.00 3.72
2188 5300 5.751243 AATTTAGAGGAACACACACACAC 57.249 39.130 0.00 0.00 0.00 3.82
2189 5301 3.897141 TTAGAGGAACACACACACACA 57.103 42.857 0.00 0.00 0.00 3.72
2190 5302 2.024176 AGAGGAACACACACACACAC 57.976 50.000 0.00 0.00 0.00 3.82
2191 5303 1.277842 AGAGGAACACACACACACACA 59.722 47.619 0.00 0.00 0.00 3.72
2192 5304 1.396996 GAGGAACACACACACACACAC 59.603 52.381 0.00 0.00 0.00 3.82
2193 5305 1.160989 GGAACACACACACACACACA 58.839 50.000 0.00 0.00 0.00 3.72
2194 5306 1.135803 GGAACACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
2195 5307 1.533299 GAACACACACACACACACACA 59.467 47.619 0.00 0.00 0.00 3.72
2196 5308 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2197 5309 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2198 5310 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2199 5311 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2200 5312 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2201 5313 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2202 5314 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2203 5315 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2204 5316 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2205 5317 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2206 5318 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2207 5319 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2208 5320 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2209 5321 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2210 5322 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2211 5323 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2212 5324 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2213 5325 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2214 5326 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2215 5327 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2216 5328 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2217 5329 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2218 5330 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2219 5331 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2220 5332 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2221 5333 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2222 5334 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2223 5335 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2224 5336 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2225 5337 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2226 5338 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2227 5339 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2619 6653 1.590610 AAATATGCCCGTGCGTTGCA 61.591 50.000 8.11 8.11 41.78 4.08
2620 6654 1.590610 AATATGCCCGTGCGTTGCAA 61.591 50.000 0.00 0.00 41.47 4.08
2688 6722 6.691754 ATCCTGATATATGAGCGTACTCTG 57.308 41.667 0.00 0.00 43.85 3.35
2689 6723 5.561679 TCCTGATATATGAGCGTACTCTGT 58.438 41.667 0.00 0.00 43.85 3.41
2690 6724 6.004574 TCCTGATATATGAGCGTACTCTGTT 58.995 40.000 0.00 0.00 43.85 3.16
2691 6725 6.490381 TCCTGATATATGAGCGTACTCTGTTT 59.510 38.462 0.00 0.00 43.85 2.83
2692 6726 7.014326 TCCTGATATATGAGCGTACTCTGTTTT 59.986 37.037 0.00 0.00 43.85 2.43
2695 6729 9.459640 TGATATATGAGCGTACTCTGTTTTAAC 57.540 33.333 0.00 0.00 43.85 2.01
2696 6730 9.459640 GATATATGAGCGTACTCTGTTTTAACA 57.540 33.333 0.00 0.00 43.85 2.41
2697 6731 5.840940 ATGAGCGTACTCTGTTTTAACAC 57.159 39.130 0.00 0.00 43.85 3.32
2698 6732 4.684877 TGAGCGTACTCTGTTTTAACACA 58.315 39.130 0.00 0.00 43.85 3.72
2699 6733 4.743151 TGAGCGTACTCTGTTTTAACACAG 59.257 41.667 14.40 14.40 44.96 3.66
2700 6734 4.690122 AGCGTACTCTGTTTTAACACAGT 58.310 39.130 18.72 8.29 44.10 3.55
2701 6735 4.506654 AGCGTACTCTGTTTTAACACAGTG 59.493 41.667 18.72 18.26 44.10 3.66
2702 6736 4.318546 GCGTACTCTGTTTTAACACAGTGG 60.319 45.833 21.49 16.73 44.10 4.00
2703 6737 4.318546 CGTACTCTGTTTTAACACAGTGGC 60.319 45.833 21.49 14.85 44.10 5.01
2704 6738 3.886123 ACTCTGTTTTAACACAGTGGCT 58.114 40.909 21.49 5.38 44.10 4.75
2706 6740 3.876914 CTCTGTTTTAACACAGTGGCTCA 59.123 43.478 18.72 1.07 44.10 4.26
2707 6741 3.625764 TCTGTTTTAACACAGTGGCTCAC 59.374 43.478 18.72 0.00 44.10 3.51
2710 6744 5.171376 TGTTTTAACACAGTGGCTCACCAT 61.171 41.667 5.31 0.00 40.44 3.55
2720 6754 2.806434 TGGCTCACCATGTTGCTATTT 58.194 42.857 0.00 0.00 42.67 1.40
2721 6755 3.164268 TGGCTCACCATGTTGCTATTTT 58.836 40.909 0.00 0.00 42.67 1.82
2722 6756 3.577848 TGGCTCACCATGTTGCTATTTTT 59.422 39.130 0.00 0.00 42.67 1.94
2738 6772 1.840598 TTTTTCTCACCCTGGCCGA 59.159 52.632 0.00 0.00 0.00 5.54
2739 6773 0.404040 TTTTTCTCACCCTGGCCGAT 59.596 50.000 0.00 0.00 0.00 4.18
2741 6775 1.198094 TTTCTCACCCTGGCCGATGA 61.198 55.000 0.00 0.00 0.00 2.92
2742 6776 0.982852 TTCTCACCCTGGCCGATGAT 60.983 55.000 0.00 0.00 0.00 2.45
2743 6777 1.227764 CTCACCCTGGCCGATGATG 60.228 63.158 0.00 0.00 0.00 3.07
2744 6778 2.203252 CACCCTGGCCGATGATGG 60.203 66.667 0.00 0.00 0.00 3.51
2746 6780 2.111878 CCCTGGCCGATGATGGTC 59.888 66.667 0.00 0.00 0.00 4.02
2747 6781 2.280389 CCTGGCCGATGATGGTCG 60.280 66.667 0.00 0.00 35.99 4.79
2748 6782 2.969238 CTGGCCGATGATGGTCGC 60.969 66.667 0.00 0.00 40.17 5.19
2749 6783 4.889856 TGGCCGATGATGGTCGCG 62.890 66.667 0.00 0.00 40.17 5.87
2750 6784 4.585526 GGCCGATGATGGTCGCGA 62.586 66.667 3.71 3.71 40.17 5.87
2751 6785 2.356313 GCCGATGATGGTCGCGAT 60.356 61.111 14.06 0.00 40.17 4.58
2752 6786 2.661566 GCCGATGATGGTCGCGATG 61.662 63.158 14.06 0.00 40.17 3.84
2753 6787 1.300156 CCGATGATGGTCGCGATGT 60.300 57.895 14.06 0.34 40.17 3.06
2754 6788 1.278172 CCGATGATGGTCGCGATGTC 61.278 60.000 14.06 11.64 40.17 3.06
2755 6789 1.278172 CGATGATGGTCGCGATGTCC 61.278 60.000 14.06 10.09 34.56 4.02
2756 6790 0.249447 GATGATGGTCGCGATGTCCA 60.249 55.000 17.99 17.99 40.15 4.02
2757 6791 0.530650 ATGATGGTCGCGATGTCCAC 60.531 55.000 18.04 12.59 38.64 4.02
2758 6792 2.202743 ATGGTCGCGATGTCCACG 60.203 61.111 18.04 0.00 38.64 4.94
2759 6793 2.884087 GATGGTCGCGATGTCCACGT 62.884 60.000 18.04 4.69 38.64 4.49
2760 6794 3.179265 GGTCGCGATGTCCACGTG 61.179 66.667 14.06 9.08 41.61 4.49
2761 6795 2.126618 GTCGCGATGTCCACGTGA 60.127 61.111 19.30 0.00 45.51 4.35
2762 6796 2.882132 TCGCGATGTCCACGTGAT 59.118 55.556 19.30 1.76 43.48 3.06
2763 6797 1.226575 TCGCGATGTCCACGTGATC 60.227 57.895 19.30 11.33 43.48 2.92
2764 6798 1.516169 CGCGATGTCCACGTGATCA 60.516 57.895 19.30 15.56 42.62 2.92
2766 6800 1.599419 CGCGATGTCCACGTGATCATA 60.599 52.381 19.30 0.00 42.62 2.15
2767 6801 2.469826 GCGATGTCCACGTGATCATAA 58.530 47.619 19.30 0.00 0.00 1.90
2768 6802 3.059884 GCGATGTCCACGTGATCATAAT 58.940 45.455 19.30 1.43 0.00 1.28
2769 6803 3.120889 GCGATGTCCACGTGATCATAATG 60.121 47.826 19.30 13.72 0.00 1.90
2771 6805 3.258971 TGTCCACGTGATCATAATGCA 57.741 42.857 19.30 0.00 0.00 3.96
2772 6806 3.807553 TGTCCACGTGATCATAATGCAT 58.192 40.909 19.30 0.00 0.00 3.96
2773 6807 4.198530 TGTCCACGTGATCATAATGCATT 58.801 39.130 19.30 17.56 0.00 3.56
2774 6808 4.273235 TGTCCACGTGATCATAATGCATTC 59.727 41.667 19.30 1.22 0.00 2.67
2776 6810 3.494251 CCACGTGATCATAATGCATTCGA 59.506 43.478 19.30 14.20 0.00 3.71
2778 6812 4.025813 CACGTGATCATAATGCATTCGACA 60.026 41.667 16.86 11.32 0.00 4.35
2779 6813 4.751600 ACGTGATCATAATGCATTCGACAT 59.248 37.500 16.86 0.23 0.00 3.06
2780 6814 5.077424 CGTGATCATAATGCATTCGACATG 58.923 41.667 16.86 13.89 0.00 3.21
2781 6815 5.388111 GTGATCATAATGCATTCGACATGG 58.612 41.667 16.86 0.00 0.00 3.66
2782 6816 5.049198 GTGATCATAATGCATTCGACATGGT 60.049 40.000 16.86 10.32 0.00 3.55
2783 6817 6.147656 GTGATCATAATGCATTCGACATGGTA 59.852 38.462 16.86 0.00 0.00 3.25
2784 6818 6.709846 TGATCATAATGCATTCGACATGGTAA 59.290 34.615 16.86 0.39 0.00 2.85
2785 6819 6.934048 TCATAATGCATTCGACATGGTAAA 57.066 33.333 16.86 0.00 0.00 2.01
2786 6820 7.509141 TCATAATGCATTCGACATGGTAAAT 57.491 32.000 16.86 0.00 0.00 1.40
2787 6821 7.939782 TCATAATGCATTCGACATGGTAAATT 58.060 30.769 16.86 0.00 0.00 1.82
2788 6822 8.075574 TCATAATGCATTCGACATGGTAAATTC 58.924 33.333 16.86 0.00 0.00 2.17
2789 6823 4.630894 TGCATTCGACATGGTAAATTCC 57.369 40.909 0.00 0.00 0.00 3.01
2790 6824 4.013050 TGCATTCGACATGGTAAATTCCA 58.987 39.130 0.00 0.00 42.01 3.53
2792 6826 5.036737 GCATTCGACATGGTAAATTCCAAG 58.963 41.667 0.00 0.00 41.09 3.61
2793 6827 5.581605 CATTCGACATGGTAAATTCCAAGG 58.418 41.667 0.00 0.00 41.09 3.61
2795 6829 3.016736 CGACATGGTAAATTCCAAGGCT 58.983 45.455 0.00 0.00 41.09 4.58
2797 6831 4.821805 CGACATGGTAAATTCCAAGGCTAT 59.178 41.667 0.00 0.00 41.09 2.97
2798 6832 5.277974 CGACATGGTAAATTCCAAGGCTATG 60.278 44.000 0.00 0.00 41.09 2.23
2800 6834 5.829924 ACATGGTAAATTCCAAGGCTATGAG 59.170 40.000 0.00 0.00 41.09 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.012664 TGTGGTGTGGTGAGTATCTATGTTT 59.987 40.000 0.00 0.00 34.92 2.83
5 6 4.081642 GTGTGTGGTGTGGTGAGTATCTAT 60.082 45.833 0.00 0.00 34.92 1.98
6 7 3.257375 GTGTGTGGTGTGGTGAGTATCTA 59.743 47.826 0.00 0.00 34.92 1.98
7 8 2.037251 GTGTGTGGTGTGGTGAGTATCT 59.963 50.000 0.00 0.00 34.92 1.98
8 9 2.224185 TGTGTGTGGTGTGGTGAGTATC 60.224 50.000 0.00 0.00 0.00 2.24
9 10 1.765904 TGTGTGTGGTGTGGTGAGTAT 59.234 47.619 0.00 0.00 0.00 2.12
10 11 1.196012 TGTGTGTGGTGTGGTGAGTA 58.804 50.000 0.00 0.00 0.00 2.59
11 12 0.326595 TTGTGTGTGGTGTGGTGAGT 59.673 50.000 0.00 0.00 0.00 3.41
12 13 1.401552 CTTTGTGTGTGGTGTGGTGAG 59.598 52.381 0.00 0.00 0.00 3.51
13 14 1.458398 CTTTGTGTGTGGTGTGGTGA 58.542 50.000 0.00 0.00 0.00 4.02
14 15 0.455410 CCTTTGTGTGTGGTGTGGTG 59.545 55.000 0.00 0.00 0.00 4.17
16 17 1.134175 GTTCCTTTGTGTGTGGTGTGG 59.866 52.381 0.00 0.00 0.00 4.17
17 18 2.091541 AGTTCCTTTGTGTGTGGTGTG 58.908 47.619 0.00 0.00 0.00 3.82
18 19 2.507407 AGTTCCTTTGTGTGTGGTGT 57.493 45.000 0.00 0.00 0.00 4.16
19 20 3.945285 AGTTAGTTCCTTTGTGTGTGGTG 59.055 43.478 0.00 0.00 0.00 4.17
21 22 5.763204 ACATAGTTAGTTCCTTTGTGTGTGG 59.237 40.000 0.00 0.00 0.00 4.17
22 23 6.481976 TCACATAGTTAGTTCCTTTGTGTGTG 59.518 38.462 9.65 0.00 40.52 3.82
23 24 6.588204 TCACATAGTTAGTTCCTTTGTGTGT 58.412 36.000 9.65 0.00 40.52 3.72
25 26 8.691661 AATTCACATAGTTAGTTCCTTTGTGT 57.308 30.769 9.65 0.00 40.52 3.72
46 47 9.554724 TTCATTTTCACGAACTAAGCATAATTC 57.445 29.630 0.00 0.00 0.00 2.17
151 152 7.630082 ACTTAAGCCAAACCTCTCATTGTATA 58.370 34.615 1.29 0.00 0.00 1.47
152 153 6.485171 ACTTAAGCCAAACCTCTCATTGTAT 58.515 36.000 1.29 0.00 0.00 2.29
176 177 0.257328 TTTGCAGTGTCCCTGTTGGA 59.743 50.000 0.00 0.00 43.55 3.53
229 230 2.253758 CCTATTGCGCCATCACCCG 61.254 63.158 4.18 0.00 0.00 5.28
239 240 4.112634 CGGATATGACCATACCTATTGCG 58.887 47.826 0.00 0.00 0.00 4.85
286 3247 4.261489 CCGGAGCATACGACAAATAGTACT 60.261 45.833 0.00 0.00 0.00 2.73
287 3248 3.979495 CCGGAGCATACGACAAATAGTAC 59.021 47.826 0.00 0.00 0.00 2.73
288 3249 3.005050 CCCGGAGCATACGACAAATAGTA 59.995 47.826 0.73 0.00 0.00 1.82
289 3250 2.223971 CCCGGAGCATACGACAAATAGT 60.224 50.000 0.73 0.00 0.00 2.12
290 3251 2.223971 ACCCGGAGCATACGACAAATAG 60.224 50.000 0.73 0.00 0.00 1.73
307 3281 3.056821 TCCATTCTAGCAATATCGACCCG 60.057 47.826 0.00 0.00 0.00 5.28
310 3284 4.383052 CACGTCCATTCTAGCAATATCGAC 59.617 45.833 0.00 0.00 0.00 4.20
316 3290 2.401583 TGCACGTCCATTCTAGCAAT 57.598 45.000 0.00 0.00 0.00 3.56
379 3358 0.917259 CTCGGACGAGAAAAGCATCG 59.083 55.000 16.15 0.00 44.53 3.84
380 3359 0.647925 GCTCGGACGAGAAAAGCATC 59.352 55.000 24.30 1.31 44.53 3.91
381 3360 0.037326 TGCTCGGACGAGAAAAGCAT 60.037 50.000 24.30 0.00 44.53 3.79
382 3361 0.667487 CTGCTCGGACGAGAAAAGCA 60.667 55.000 24.30 14.33 44.53 3.91
383 3362 1.960994 GCTGCTCGGACGAGAAAAGC 61.961 60.000 24.30 22.01 44.53 3.51
384 3363 0.667487 TGCTGCTCGGACGAGAAAAG 60.667 55.000 24.30 17.33 44.53 2.27
385 3364 0.037326 ATGCTGCTCGGACGAGAAAA 60.037 50.000 24.30 6.57 44.53 2.29
386 3365 0.737367 CATGCTGCTCGGACGAGAAA 60.737 55.000 24.30 10.94 44.53 2.52
387 3366 1.153765 CATGCTGCTCGGACGAGAA 60.154 57.895 24.30 13.95 44.53 2.87
388 3367 2.046285 TCATGCTGCTCGGACGAGA 61.046 57.895 24.30 9.29 44.53 4.04
389 3368 1.875813 GTCATGCTGCTCGGACGAG 60.876 63.158 16.77 16.77 44.56 4.18
390 3369 2.181777 GTCATGCTGCTCGGACGA 59.818 61.111 0.00 0.00 0.00 4.20
391 3370 2.887568 GGTCATGCTGCTCGGACG 60.888 66.667 0.00 0.00 0.00 4.79
392 3371 2.103042 GTGGTCATGCTGCTCGGAC 61.103 63.158 0.00 5.83 0.00 4.79
393 3372 2.265739 GTGGTCATGCTGCTCGGA 59.734 61.111 0.00 0.00 0.00 4.55
394 3373 2.046988 TGTGGTCATGCTGCTCGG 60.047 61.111 0.00 0.00 0.00 4.63
395 3374 1.079612 TCTGTGGTCATGCTGCTCG 60.080 57.895 0.00 0.00 0.00 5.03
396 3375 0.743701 CCTCTGTGGTCATGCTGCTC 60.744 60.000 0.00 0.00 0.00 4.26
397 3376 1.196766 TCCTCTGTGGTCATGCTGCT 61.197 55.000 0.00 0.00 37.07 4.24
398 3377 0.321919 TTCCTCTGTGGTCATGCTGC 60.322 55.000 0.00 0.00 37.07 5.25
399 3378 2.189594 TTTCCTCTGTGGTCATGCTG 57.810 50.000 0.00 0.00 37.07 4.41
400 3379 2.306805 TGATTTCCTCTGTGGTCATGCT 59.693 45.455 0.00 0.00 37.07 3.79
401 3380 2.715046 TGATTTCCTCTGTGGTCATGC 58.285 47.619 0.00 0.00 37.07 4.06
402 3381 4.778579 AGATGATTTCCTCTGTGGTCATG 58.221 43.478 5.42 0.00 31.61 3.07
403 3382 4.472470 TGAGATGATTTCCTCTGTGGTCAT 59.528 41.667 1.39 1.39 33.41 3.06
404 3383 3.840078 TGAGATGATTTCCTCTGTGGTCA 59.160 43.478 0.00 0.00 37.07 4.02
405 3384 4.478206 TGAGATGATTTCCTCTGTGGTC 57.522 45.455 0.00 0.00 37.07 4.02
406 3385 4.916041 TTGAGATGATTTCCTCTGTGGT 57.084 40.909 0.00 0.00 37.07 4.16
407 3386 5.391310 CGTTTTGAGATGATTTCCTCTGTGG 60.391 44.000 0.00 0.00 37.10 4.17
408 3387 5.625251 CGTTTTGAGATGATTTCCTCTGTG 58.375 41.667 0.00 0.00 0.00 3.66
409 3388 4.154918 GCGTTTTGAGATGATTTCCTCTGT 59.845 41.667 0.00 0.00 0.00 3.41
410 3389 4.394300 AGCGTTTTGAGATGATTTCCTCTG 59.606 41.667 0.00 0.00 0.00 3.35
411 3390 4.583871 AGCGTTTTGAGATGATTTCCTCT 58.416 39.130 0.00 0.00 0.00 3.69
412 3391 4.954092 AGCGTTTTGAGATGATTTCCTC 57.046 40.909 0.00 0.00 0.00 3.71
413 3392 4.330074 CGTAGCGTTTTGAGATGATTTCCT 59.670 41.667 0.00 0.00 0.00 3.36
414 3393 4.494199 CCGTAGCGTTTTGAGATGATTTCC 60.494 45.833 0.00 0.00 0.00 3.13
415 3394 4.578601 CCGTAGCGTTTTGAGATGATTTC 58.421 43.478 0.00 0.00 0.00 2.17
416 3395 3.181510 GCCGTAGCGTTTTGAGATGATTT 60.182 43.478 0.00 0.00 0.00 2.17
417 3396 2.351726 GCCGTAGCGTTTTGAGATGATT 59.648 45.455 0.00 0.00 0.00 2.57
418 3397 1.933853 GCCGTAGCGTTTTGAGATGAT 59.066 47.619 0.00 0.00 0.00 2.45
419 3398 1.355971 GCCGTAGCGTTTTGAGATGA 58.644 50.000 0.00 0.00 0.00 2.92
420 3399 0.373716 GGCCGTAGCGTTTTGAGATG 59.626 55.000 0.00 0.00 41.24 2.90
421 3400 1.082117 CGGCCGTAGCGTTTTGAGAT 61.082 55.000 19.50 0.00 41.24 2.75
422 3401 1.735198 CGGCCGTAGCGTTTTGAGA 60.735 57.895 19.50 0.00 41.24 3.27
423 3402 2.776072 CGGCCGTAGCGTTTTGAG 59.224 61.111 19.50 0.00 41.24 3.02
424 3403 3.416382 GCGGCCGTAGCGTTTTGA 61.416 61.111 28.70 0.00 41.24 2.69
425 3404 2.718993 TTTGCGGCCGTAGCGTTTTG 62.719 55.000 28.70 0.00 41.24 2.44
426 3405 2.061182 TTTTGCGGCCGTAGCGTTTT 62.061 50.000 28.70 0.00 41.24 2.43
427 3406 1.858372 ATTTTGCGGCCGTAGCGTTT 61.858 50.000 28.70 3.66 41.24 3.60
428 3407 2.329614 ATTTTGCGGCCGTAGCGTT 61.330 52.632 28.70 5.59 41.24 4.84
429 3408 2.744709 ATTTTGCGGCCGTAGCGT 60.745 55.556 28.70 8.80 41.24 5.07
430 3409 2.246993 TTCATTTTGCGGCCGTAGCG 62.247 55.000 28.70 11.72 41.24 4.26
431 3410 0.100503 ATTCATTTTGCGGCCGTAGC 59.899 50.000 28.70 11.02 38.76 3.58
432 3411 2.559998 AATTCATTTTGCGGCCGTAG 57.440 45.000 28.70 10.71 0.00 3.51
433 3412 3.880490 AGATAATTCATTTTGCGGCCGTA 59.120 39.130 28.70 21.83 0.00 4.02
434 3413 2.687935 AGATAATTCATTTTGCGGCCGT 59.312 40.909 28.70 2.33 0.00 5.68
435 3414 3.354089 AGATAATTCATTTTGCGGCCG 57.646 42.857 24.05 24.05 0.00 6.13
436 3415 6.012658 TCATAGATAATTCATTTTGCGGCC 57.987 37.500 0.00 0.00 0.00 6.13
437 3416 7.596248 ACAATCATAGATAATTCATTTTGCGGC 59.404 33.333 0.00 0.00 0.00 6.53
438 3417 9.121517 GACAATCATAGATAATTCATTTTGCGG 57.878 33.333 0.00 0.00 0.00 5.69
439 3418 9.888878 AGACAATCATAGATAATTCATTTTGCG 57.111 29.630 0.00 0.00 0.00 4.85
457 3436 9.671279 ACAACATTGTATGATTAGAGACAATCA 57.329 29.630 0.00 1.36 39.81 2.57
460 3439 9.936759 TGTACAACATTGTATGATTAGAGACAA 57.063 29.630 7.69 0.00 44.59 3.18
468 3447 8.390354 CGAGTTCATGTACAACATTGTATGATT 58.610 33.333 7.69 2.53 44.59 2.57
469 3448 7.549134 ACGAGTTCATGTACAACATTGTATGAT 59.451 33.333 7.69 1.62 44.59 2.45
470 3449 6.871492 ACGAGTTCATGTACAACATTGTATGA 59.129 34.615 7.69 6.88 44.59 2.15
471 3450 7.060600 ACGAGTTCATGTACAACATTGTATG 57.939 36.000 7.69 4.77 44.59 2.39
472 3451 6.034577 CGACGAGTTCATGTACAACATTGTAT 59.965 38.462 7.69 0.00 44.59 2.29
473 3452 5.343860 CGACGAGTTCATGTACAACATTGTA 59.656 40.000 0.00 0.22 42.35 2.41
474 3453 4.149922 CGACGAGTTCATGTACAACATTGT 59.850 41.667 0.00 2.32 44.86 2.71
475 3454 4.149922 ACGACGAGTTCATGTACAACATTG 59.850 41.667 0.00 0.00 36.53 2.82
476 3455 4.304110 ACGACGAGTTCATGTACAACATT 58.696 39.130 0.00 0.00 36.53 2.71
477 3456 3.909430 ACGACGAGTTCATGTACAACAT 58.091 40.909 0.00 0.00 39.91 2.71
478 3457 3.358707 ACGACGAGTTCATGTACAACA 57.641 42.857 0.00 0.00 0.00 3.33
479 3458 3.296426 CGTACGACGAGTTCATGTACAAC 59.704 47.826 10.44 0.00 46.05 3.32
480 3459 3.481839 CGTACGACGAGTTCATGTACAA 58.518 45.455 10.44 0.00 46.05 2.41
481 3460 2.725759 GCGTACGACGAGTTCATGTACA 60.726 50.000 21.65 0.00 46.05 2.90
482 3461 1.836555 GCGTACGACGAGTTCATGTAC 59.163 52.381 21.65 0.00 46.05 2.90
483 3462 1.464219 TGCGTACGACGAGTTCATGTA 59.536 47.619 21.65 0.00 46.05 2.29
484 3463 0.239082 TGCGTACGACGAGTTCATGT 59.761 50.000 21.65 0.00 46.05 3.21
485 3464 1.545759 ATGCGTACGACGAGTTCATG 58.454 50.000 21.65 0.00 46.05 3.07
486 3465 2.853662 GCTATGCGTACGACGAGTTCAT 60.854 50.000 21.65 13.01 46.05 2.57
487 3466 1.530441 GCTATGCGTACGACGAGTTCA 60.530 52.381 21.65 5.63 46.05 3.18
488 3467 1.110876 GCTATGCGTACGACGAGTTC 58.889 55.000 21.65 0.00 46.05 3.01
489 3468 0.448990 TGCTATGCGTACGACGAGTT 59.551 50.000 21.65 0.00 46.05 3.01
490 3469 0.448990 TTGCTATGCGTACGACGAGT 59.551 50.000 21.65 1.48 46.05 4.18
491 3470 1.113253 CTTGCTATGCGTACGACGAG 58.887 55.000 21.65 12.56 46.05 4.18
492 3471 0.248336 CCTTGCTATGCGTACGACGA 60.248 55.000 21.65 1.47 46.05 4.20
493 3472 0.524816 ACCTTGCTATGCGTACGACG 60.525 55.000 21.65 4.31 45.88 5.12
494 3473 1.587034 GAACCTTGCTATGCGTACGAC 59.413 52.381 21.65 11.11 0.00 4.34
495 3474 1.796253 CGAACCTTGCTATGCGTACGA 60.796 52.381 21.65 4.52 0.00 3.43
496 3475 0.570734 CGAACCTTGCTATGCGTACG 59.429 55.000 11.84 11.84 0.00 3.67
497 3476 1.636988 ACGAACCTTGCTATGCGTAC 58.363 50.000 0.00 0.00 0.00 3.67
498 3477 2.373540 AACGAACCTTGCTATGCGTA 57.626 45.000 0.00 0.00 0.00 4.42
499 3478 1.463444 GAAACGAACCTTGCTATGCGT 59.537 47.619 0.00 0.00 0.00 5.24
500 3479 1.732259 AGAAACGAACCTTGCTATGCG 59.268 47.619 0.00 0.00 0.00 4.73
501 3480 2.742053 TCAGAAACGAACCTTGCTATGC 59.258 45.455 0.00 0.00 0.00 3.14
502 3481 4.034510 GGATCAGAAACGAACCTTGCTATG 59.965 45.833 0.00 0.00 0.00 2.23
503 3482 4.080863 AGGATCAGAAACGAACCTTGCTAT 60.081 41.667 0.00 0.00 34.74 2.97
504 3483 3.260884 AGGATCAGAAACGAACCTTGCTA 59.739 43.478 0.00 0.00 34.74 3.49
505 3484 2.039084 AGGATCAGAAACGAACCTTGCT 59.961 45.455 0.00 0.00 34.74 3.91
506 3485 2.427506 AGGATCAGAAACGAACCTTGC 58.572 47.619 0.00 0.00 34.74 4.01
507 3486 6.554334 TTTTAGGATCAGAAACGAACCTTG 57.446 37.500 0.00 0.00 38.90 3.61
530 3509 7.262048 TGAAATAGAAACGAACCTTGCTTTTT 58.738 30.769 0.00 0.00 0.00 1.94
531 3510 6.801575 TGAAATAGAAACGAACCTTGCTTTT 58.198 32.000 0.00 0.00 0.00 2.27
532 3511 6.385649 TGAAATAGAAACGAACCTTGCTTT 57.614 33.333 0.00 0.00 0.00 3.51
533 3512 6.385649 TTGAAATAGAAACGAACCTTGCTT 57.614 33.333 0.00 0.00 0.00 3.91
534 3513 6.575162 ATTGAAATAGAAACGAACCTTGCT 57.425 33.333 0.00 0.00 0.00 3.91
535 3514 8.911247 ATTATTGAAATAGAAACGAACCTTGC 57.089 30.769 0.00 0.00 0.00 4.01
539 3518 9.447040 GCCTTATTATTGAAATAGAAACGAACC 57.553 33.333 0.00 0.00 0.00 3.62
540 3519 9.447040 GGCCTTATTATTGAAATAGAAACGAAC 57.553 33.333 0.00 0.00 0.00 3.95
541 3520 9.179909 TGGCCTTATTATTGAAATAGAAACGAA 57.820 29.630 3.32 0.00 0.00 3.85
542 3521 8.740123 TGGCCTTATTATTGAAATAGAAACGA 57.260 30.769 3.32 0.00 0.00 3.85
543 3522 8.836413 TCTGGCCTTATTATTGAAATAGAAACG 58.164 33.333 3.32 0.00 0.00 3.60
545 3524 9.354673 CCTCTGGCCTTATTATTGAAATAGAAA 57.645 33.333 3.32 0.00 0.00 2.52
546 3525 7.448469 GCCTCTGGCCTTATTATTGAAATAGAA 59.552 37.037 3.32 0.00 44.06 2.10
547 3526 6.942576 GCCTCTGGCCTTATTATTGAAATAGA 59.057 38.462 3.32 0.00 44.06 1.98
548 3527 7.150783 GCCTCTGGCCTTATTATTGAAATAG 57.849 40.000 3.32 0.00 44.06 1.73
565 3544 2.925306 GCGTATACCGTTATGCCTCTGG 60.925 54.545 0.00 0.00 39.32 3.86
566 3545 2.287970 TGCGTATACCGTTATGCCTCTG 60.288 50.000 0.00 0.00 39.32 3.35
567 3546 1.958579 TGCGTATACCGTTATGCCTCT 59.041 47.619 0.00 0.00 39.32 3.69
568 3547 2.427232 TGCGTATACCGTTATGCCTC 57.573 50.000 0.00 0.00 39.32 4.70
569 3548 2.476821 GTTGCGTATACCGTTATGCCT 58.523 47.619 0.00 0.00 39.32 4.75
570 3549 1.190763 CGTTGCGTATACCGTTATGCC 59.809 52.381 0.00 0.00 39.32 4.40
571 3550 2.118683 TCGTTGCGTATACCGTTATGC 58.881 47.619 0.00 0.00 39.32 3.14
572 3551 3.732219 ACATCGTTGCGTATACCGTTATG 59.268 43.478 0.00 0.00 39.32 1.90
573 3552 3.968649 ACATCGTTGCGTATACCGTTAT 58.031 40.909 0.00 0.00 39.32 1.89
574 3553 3.181502 TGACATCGTTGCGTATACCGTTA 60.182 43.478 0.00 0.00 39.32 3.18
575 3554 2.187707 GACATCGTTGCGTATACCGTT 58.812 47.619 0.00 0.00 39.32 4.44
576 3555 1.132834 TGACATCGTTGCGTATACCGT 59.867 47.619 0.00 0.00 39.32 4.83
577 3556 1.515631 GTGACATCGTTGCGTATACCG 59.484 52.381 0.00 0.00 40.40 4.02
578 3557 2.805845 AGTGACATCGTTGCGTATACC 58.194 47.619 0.00 0.00 0.00 2.73
579 3558 5.937165 TTTAGTGACATCGTTGCGTATAC 57.063 39.130 0.00 0.00 0.00 1.47
580 3559 6.532302 ACATTTTAGTGACATCGTTGCGTATA 59.468 34.615 0.00 0.00 0.00 1.47
581 3560 5.350365 ACATTTTAGTGACATCGTTGCGTAT 59.650 36.000 0.00 0.00 0.00 3.06
582 3561 4.687018 ACATTTTAGTGACATCGTTGCGTA 59.313 37.500 0.00 0.00 0.00 4.42
583 3562 3.496884 ACATTTTAGTGACATCGTTGCGT 59.503 39.130 0.00 0.00 0.00 5.24
584 3563 4.065423 ACATTTTAGTGACATCGTTGCG 57.935 40.909 0.00 0.00 0.00 4.85
585 3564 5.922546 TGTACATTTTAGTGACATCGTTGC 58.077 37.500 0.00 0.00 0.00 4.17
586 3565 7.853437 TGTTTGTACATTTTAGTGACATCGTTG 59.147 33.333 0.00 0.00 0.00 4.10
634 3642 3.004734 CCAAGGAATATCACCGCCAATTC 59.995 47.826 0.00 0.00 0.00 2.17
714 3722 2.517650 TGACACGCCGATATATGCAA 57.482 45.000 0.00 0.00 0.00 4.08
724 3732 1.018752 TGTGATTGGATGACACGCCG 61.019 55.000 0.00 0.00 37.35 6.46
787 3797 5.931146 GCCACAAGGAGATCAGATATACTTG 59.069 44.000 23.41 23.41 39.60 3.16
923 3935 0.478507 CTTAAGGGGATCGGGGCAAT 59.521 55.000 0.00 0.00 0.00 3.56
936 3949 1.408822 GGGTGTGGAGATGGCTTAAGG 60.409 57.143 4.29 0.00 0.00 2.69
980 3998 4.281941 CCATTCTGATCGATGGAGGTTCTA 59.718 45.833 0.54 0.00 36.31 2.10
1305 4323 1.530419 AAGCATGGCCCAACGACAA 60.530 52.632 0.00 0.00 0.00 3.18
1308 4326 2.676121 CCAAGCATGGCCCAACGA 60.676 61.111 0.00 0.00 40.58 3.85
1572 4590 4.537433 GGATCGAAGCTGCCGCCT 62.537 66.667 0.00 0.00 36.60 5.52
1605 4623 1.675310 CGCAAATGCCTCAGGGTCA 60.675 57.895 0.00 0.00 37.91 4.02
1620 4638 1.004560 CTTGACCTTGAGCTCCGCA 60.005 57.895 12.15 0.00 0.00 5.69
1623 4641 1.270907 TCTCCTTGACCTTGAGCTCC 58.729 55.000 12.15 0.00 0.00 4.70
1737 4755 2.599281 TTGACAGGGTCGGCGAGA 60.599 61.111 11.20 0.00 34.95 4.04
1810 4828 0.803117 CTCACAGCAAGCATGGTCTG 59.197 55.000 11.01 11.01 34.35 3.51
1824 4848 0.599991 GCATGACGACACACCTCACA 60.600 55.000 0.00 0.00 0.00 3.58
1840 4864 4.434713 TGATAGTACATATCACGCGCAT 57.565 40.909 5.73 0.04 44.33 4.73
1874 4899 5.534207 AATGTTTTTGCACAGAATCCTCA 57.466 34.783 0.00 0.00 0.00 3.86
1884 4909 6.018016 AGGCAAATCTTGTAATGTTTTTGCAC 60.018 34.615 16.91 8.67 0.00 4.57
1966 4991 0.393808 AATGTGAGCCCGGCGTATTT 60.394 50.000 6.01 0.00 0.00 1.40
2006 5032 4.538746 TGTGGTATATGTTCAACCGTCA 57.461 40.909 0.00 0.00 35.98 4.35
2084 5112 5.862422 ATATAGGGTGTCTAGGAGCAGTA 57.138 43.478 0.00 0.00 0.00 2.74
2160 5272 7.379529 GTGTGTGTGTTCCTCTAAATTTGAATG 59.620 37.037 0.00 0.00 0.00 2.67
2161 5273 7.068103 TGTGTGTGTGTTCCTCTAAATTTGAAT 59.932 33.333 0.00 0.00 0.00 2.57
2167 5279 4.574828 GTGTGTGTGTGTGTTCCTCTAAAT 59.425 41.667 0.00 0.00 0.00 1.40
2174 5286 1.135803 GTGTGTGTGTGTGTGTGTTCC 60.136 52.381 0.00 0.00 0.00 3.62
2180 5292 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2181 5293 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2182 5294 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2186 5298 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2187 5299 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2188 5300 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2189 5301 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2190 5302 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2191 5303 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2192 5304 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2193 5305 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2194 5306 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2195 5307 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2196 5308 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2197 5309 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2198 5310 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2199 5311 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2200 5312 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2201 5313 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2202 5314 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2203 5315 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2204 5316 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2205 5317 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2206 5318 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2207 5319 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2208 5320 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2209 5321 3.314083 TGTGTGTGTGTGTGTGTGT 57.686 47.368 0.00 0.00 0.00 3.72
2602 6636 2.043405 TTGCAACGCACGGGCATAT 61.043 52.632 11.77 0.00 38.71 1.78
2604 6638 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
2614 6648 2.570442 TTTTTGTCTCCCGTTGCAAC 57.430 45.000 19.89 19.89 0.00 4.17
2656 6690 9.190317 ACGCTCATATATCAGGATATTAAGTCA 57.810 33.333 7.08 0.00 35.71 3.41
2663 6697 7.996066 ACAGAGTACGCTCATATATCAGGATAT 59.004 37.037 0.00 6.97 44.00 1.63
2664 6698 7.339482 ACAGAGTACGCTCATATATCAGGATA 58.661 38.462 0.00 0.00 44.00 2.59
2665 6699 6.184068 ACAGAGTACGCTCATATATCAGGAT 58.816 40.000 0.00 0.00 44.00 3.24
2666 6700 5.561679 ACAGAGTACGCTCATATATCAGGA 58.438 41.667 0.00 0.00 44.00 3.86
2667 6701 5.888691 ACAGAGTACGCTCATATATCAGG 57.111 43.478 0.00 0.00 44.00 3.86
2669 6703 9.459640 GTTAAAACAGAGTACGCTCATATATCA 57.540 33.333 0.00 0.00 44.00 2.15
2670 6704 9.459640 TGTTAAAACAGAGTACGCTCATATATC 57.540 33.333 0.00 0.00 44.00 1.63
2671 6705 9.245962 GTGTTAAAACAGAGTACGCTCATATAT 57.754 33.333 0.00 0.00 44.00 0.86
2672 6706 8.245491 TGTGTTAAAACAGAGTACGCTCATATA 58.755 33.333 0.00 0.00 44.00 0.86
2674 6708 6.448852 TGTGTTAAAACAGAGTACGCTCATA 58.551 36.000 0.00 0.00 44.00 2.15
2676 6710 4.684877 TGTGTTAAAACAGAGTACGCTCA 58.315 39.130 0.00 0.00 44.00 4.26
2688 6722 2.685897 TGGTGAGCCACTGTGTTAAAAC 59.314 45.455 7.08 0.00 40.46 2.43
2689 6723 3.006112 TGGTGAGCCACTGTGTTAAAA 57.994 42.857 7.08 0.00 40.46 1.52
2690 6724 2.719531 TGGTGAGCCACTGTGTTAAA 57.280 45.000 7.08 0.00 40.46 1.52
2701 6735 3.874392 AAAATAGCAACATGGTGAGCC 57.126 42.857 16.85 0.00 0.00 4.70
2720 6754 0.404040 ATCGGCCAGGGTGAGAAAAA 59.596 50.000 2.24 0.00 0.00 1.94
2721 6755 0.322456 CATCGGCCAGGGTGAGAAAA 60.322 55.000 2.24 0.00 0.00 2.29
2722 6756 1.198094 TCATCGGCCAGGGTGAGAAA 61.198 55.000 2.24 0.00 0.00 2.52
2724 6758 1.383109 ATCATCGGCCAGGGTGAGA 60.383 57.895 2.24 0.00 0.00 3.27
2726 6760 2.745308 CCATCATCGGCCAGGGTGA 61.745 63.158 2.24 0.00 0.00 4.02
2727 6761 2.203252 CCATCATCGGCCAGGGTG 60.203 66.667 2.24 0.00 0.00 4.61
2728 6762 2.692368 ACCATCATCGGCCAGGGT 60.692 61.111 2.24 0.00 0.00 4.34
2729 6763 2.111878 GACCATCATCGGCCAGGG 59.888 66.667 2.24 0.00 0.00 4.45
2731 6765 2.969238 GCGACCATCATCGGCCAG 60.969 66.667 2.24 0.00 42.49 4.85
2732 6766 4.889856 CGCGACCATCATCGGCCA 62.890 66.667 0.00 0.00 42.49 5.36
2733 6767 3.865929 ATCGCGACCATCATCGGCC 62.866 63.158 12.93 0.00 42.49 6.13
2734 6768 2.356313 ATCGCGACCATCATCGGC 60.356 61.111 12.93 0.00 42.49 5.54
2735 6769 1.278172 GACATCGCGACCATCATCGG 61.278 60.000 12.93 0.00 42.49 4.18
2736 6770 1.278172 GGACATCGCGACCATCATCG 61.278 60.000 12.93 0.00 45.09 3.84
2738 6772 0.530650 GTGGACATCGCGACCATCAT 60.531 55.000 18.56 0.00 41.61 2.45
2739 6773 1.153647 GTGGACATCGCGACCATCA 60.154 57.895 18.56 9.63 41.61 3.07
2747 6781 2.134201 TATGATCACGTGGACATCGC 57.866 50.000 23.54 6.11 0.00 4.58
2748 6782 3.120889 GCATTATGATCACGTGGACATCG 60.121 47.826 23.54 16.85 0.00 3.84
2749 6783 3.809279 TGCATTATGATCACGTGGACATC 59.191 43.478 23.54 16.73 0.00 3.06
2750 6784 3.807553 TGCATTATGATCACGTGGACAT 58.192 40.909 23.43 23.43 0.00 3.06
2751 6785 3.258971 TGCATTATGATCACGTGGACA 57.741 42.857 17.00 15.95 0.00 4.02
2752 6786 4.609113 CGAATGCATTATGATCACGTGGAC 60.609 45.833 17.00 10.61 0.00 4.02
2753 6787 3.494251 CGAATGCATTATGATCACGTGGA 59.506 43.478 17.00 2.69 0.00 4.02
2754 6788 3.494251 TCGAATGCATTATGATCACGTGG 59.506 43.478 17.00 0.00 0.00 4.94
2755 6789 4.025813 TGTCGAATGCATTATGATCACGTG 60.026 41.667 12.97 9.94 0.00 4.49
2756 6790 4.119136 TGTCGAATGCATTATGATCACGT 58.881 39.130 12.97 0.00 0.00 4.49
2757 6791 4.713854 TGTCGAATGCATTATGATCACG 57.286 40.909 12.97 9.90 0.00 4.35
2758 6792 5.049198 ACCATGTCGAATGCATTATGATCAC 60.049 40.000 12.97 3.60 0.00 3.06
2759 6793 5.065235 ACCATGTCGAATGCATTATGATCA 58.935 37.500 12.97 13.35 0.00 2.92
2760 6794 5.618056 ACCATGTCGAATGCATTATGATC 57.382 39.130 12.97 8.79 0.00 2.92
2761 6795 7.509141 TTTACCATGTCGAATGCATTATGAT 57.491 32.000 12.97 1.76 0.00 2.45
2762 6796 6.934048 TTTACCATGTCGAATGCATTATGA 57.066 33.333 12.97 10.75 0.00 2.15
2763 6797 7.326789 GGAATTTACCATGTCGAATGCATTATG 59.673 37.037 12.97 12.02 0.00 1.90
2764 6798 7.014134 TGGAATTTACCATGTCGAATGCATTAT 59.986 33.333 12.97 0.00 34.77 1.28
2766 6800 5.126869 TGGAATTTACCATGTCGAATGCATT 59.873 36.000 12.83 12.83 34.77 3.56
2767 6801 4.644234 TGGAATTTACCATGTCGAATGCAT 59.356 37.500 0.00 0.00 34.77 3.96
2768 6802 4.013050 TGGAATTTACCATGTCGAATGCA 58.987 39.130 0.00 0.00 34.77 3.96
2769 6803 4.630894 TGGAATTTACCATGTCGAATGC 57.369 40.909 0.00 0.00 34.77 3.56
2771 6805 4.097892 GCCTTGGAATTTACCATGTCGAAT 59.902 41.667 0.00 0.00 39.82 3.34
2772 6806 3.442273 GCCTTGGAATTTACCATGTCGAA 59.558 43.478 0.00 0.00 39.82 3.71
2773 6807 3.013921 GCCTTGGAATTTACCATGTCGA 58.986 45.455 0.00 0.00 39.82 4.20
2774 6808 3.016736 AGCCTTGGAATTTACCATGTCG 58.983 45.455 0.00 0.00 39.82 4.35
2776 6810 5.765510 TCATAGCCTTGGAATTTACCATGT 58.234 37.500 0.00 0.00 39.82 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.