Multiple sequence alignment - TraesCS5B01G462700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G462700 chr5B 100.000 2849 0 0 535 3383 638304983 638302135 0.000000e+00 5262.0
1 TraesCS5B01G462700 chr5B 100.000 257 0 0 1 257 638305517 638305261 3.050000e-130 475.0
2 TraesCS5B01G462700 chr5B 90.062 161 16 0 2453 2613 612672821 612672981 3.420000e-50 209.0
3 TraesCS5B01G462700 chr5D 93.214 1901 92 14 535 2416 507769511 507767629 0.000000e+00 2761.0
4 TraesCS5B01G462700 chr5D 80.916 917 158 13 1462 2368 507617961 507617052 0.000000e+00 708.0
5 TraesCS5B01G462700 chr5D 85.048 729 69 29 2663 3381 507767407 507766709 0.000000e+00 706.0
6 TraesCS5B01G462700 chr5D 87.348 411 43 5 969 1371 507618702 507618293 2.380000e-126 462.0
7 TraesCS5B01G462700 chr5D 86.932 176 23 0 2450 2625 482291939 482291764 7.400000e-47 198.0
8 TraesCS5B01G462700 chr5A 92.133 1932 117 18 535 2457 635381836 635379931 0.000000e+00 2693.0
9 TraesCS5B01G462700 chr5A 92.192 1063 79 3 963 2021 635337744 635336682 0.000000e+00 1500.0
10 TraesCS5B01G462700 chr5A 80.585 958 165 18 1427 2372 635291502 635290554 0.000000e+00 719.0
11 TraesCS5B01G462700 chr5A 90.452 398 35 3 969 1364 635292523 635292127 3.870000e-144 521.0
12 TraesCS5B01G462700 chr5A 84.926 471 52 13 2797 3253 635336192 635335727 3.080000e-125 459.0
13 TraesCS5B01G462700 chr5A 92.905 296 21 0 2110 2405 635336681 635336386 6.710000e-117 431.0
14 TraesCS5B01G462700 chr5A 84.715 386 38 7 2969 3353 635378473 635378108 1.920000e-97 366.0
15 TraesCS5B01G462700 chr5A 76.940 464 75 23 2940 3383 8907964 8908415 5.640000e-58 235.0
16 TraesCS5B01G462700 chr5A 85.714 140 18 1 3191 3330 447140738 447140601 2.720000e-31 147.0
17 TraesCS5B01G462700 chr5A 79.592 196 27 11 3191 3378 657566471 657566661 9.850000e-26 128.0
18 TraesCS5B01G462700 chr7D 76.367 1024 194 28 1370 2369 47649259 47650258 1.080000e-139 507.0
19 TraesCS5B01G462700 chr7D 79.623 584 97 14 1747 2328 47609868 47610431 1.890000e-107 399.0
20 TraesCS5B01G462700 chr7D 85.530 387 51 5 975 1358 47648783 47649167 1.890000e-107 399.0
21 TraesCS5B01G462700 chr7D 89.157 166 18 0 2455 2620 84347871 84347706 1.230000e-49 207.0
22 TraesCS5B01G462700 chr1B 79.022 777 133 18 951 1719 562564874 562564120 3.900000e-139 505.0
23 TraesCS5B01G462700 chrUn 78.760 758 137 19 976 1719 82308901 82309648 1.410000e-133 486.0
24 TraesCS5B01G462700 chrUn 78.760 758 137 19 976 1719 286813468 286812721 1.410000e-133 486.0
25 TraesCS5B01G462700 chrUn 79.698 596 99 13 1747 2337 82309706 82310284 8.740000e-111 411.0
26 TraesCS5B01G462700 chrUn 79.966 584 95 13 1759 2337 286812651 286812085 8.740000e-111 411.0
27 TraesCS5B01G462700 chrUn 79.248 612 106 14 1759 2369 49379900 49380491 1.130000e-109 407.0
28 TraesCS5B01G462700 chrUn 89.024 164 18 0 2460 2623 86734180 86734343 1.590000e-48 204.0
29 TraesCS5B01G462700 chrUn 75.989 354 77 7 1370 1719 49379481 49379830 3.470000e-40 176.0
30 TraesCS5B01G462700 chr7A 85.330 409 52 7 956 1358 50182569 50182163 1.880000e-112 416.0
31 TraesCS5B01G462700 chr2D 76.707 498 80 25 2902 3381 125725042 125725521 9.380000e-61 244.0
32 TraesCS5B01G462700 chr4D 76.578 491 84 24 2902 3382 125074841 125074372 1.210000e-59 241.0
33 TraesCS5B01G462700 chr1A 92.169 166 13 0 2452 2617 181769424 181769589 5.640000e-58 235.0
34 TraesCS5B01G462700 chr6D 89.571 163 17 0 2455 2617 351246503 351246341 1.230000e-49 207.0
35 TraesCS5B01G462700 chr2A 89.571 163 17 0 2455 2617 632594781 632594943 1.230000e-49 207.0
36 TraesCS5B01G462700 chr2A 79.897 194 27 10 3199 3381 768351510 768351702 7.620000e-27 132.0
37 TraesCS5B01G462700 chr6B 89.506 162 17 0 2452 2613 47858773 47858934 4.420000e-49 206.0
38 TraesCS5B01G462700 chr3A 88.690 168 19 0 2455 2622 600921016 600920849 4.420000e-49 206.0
39 TraesCS5B01G462700 chr3A 80.808 198 33 5 3130 3327 574252377 574252569 2.100000e-32 150.0
40 TraesCS5B01G462700 chr3B 77.143 350 53 21 3049 3381 545676246 545675907 9.650000e-41 178.0
41 TraesCS5B01G462700 chr3B 89.474 57 4 2 3323 3378 743568366 743568421 1.680000e-08 71.3
42 TraesCS5B01G462700 chr3B 89.474 57 4 2 3323 3378 743601542 743601597 1.680000e-08 71.3
43 TraesCS5B01G462700 chr3B 76.923 130 24 5 1766 1892 16757373 16757247 6.060000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G462700 chr5B 638302135 638305517 3382 True 2868.500000 5262 100.000000 1 3383 2 chr5B.!!$R1 3382
1 TraesCS5B01G462700 chr5D 507766709 507769511 2802 True 1733.500000 2761 89.131000 535 3381 2 chr5D.!!$R3 2846
2 TraesCS5B01G462700 chr5D 507617052 507618702 1650 True 585.000000 708 84.132000 969 2368 2 chr5D.!!$R2 1399
3 TraesCS5B01G462700 chr5A 635378108 635381836 3728 True 1529.500000 2693 88.424000 535 3353 2 chr5A.!!$R4 2818
4 TraesCS5B01G462700 chr5A 635335727 635337744 2017 True 796.666667 1500 90.007667 963 3253 3 chr5A.!!$R3 2290
5 TraesCS5B01G462700 chr5A 635290554 635292523 1969 True 620.000000 719 85.518500 969 2372 2 chr5A.!!$R2 1403
6 TraesCS5B01G462700 chr7D 47648783 47650258 1475 False 453.000000 507 80.948500 975 2369 2 chr7D.!!$F2 1394
7 TraesCS5B01G462700 chr7D 47609868 47610431 563 False 399.000000 399 79.623000 1747 2328 1 chr7D.!!$F1 581
8 TraesCS5B01G462700 chr1B 562564120 562564874 754 True 505.000000 505 79.022000 951 1719 1 chr1B.!!$R1 768
9 TraesCS5B01G462700 chrUn 82308901 82310284 1383 False 448.500000 486 79.229000 976 2337 2 chrUn.!!$F3 1361
10 TraesCS5B01G462700 chrUn 286812085 286813468 1383 True 448.500000 486 79.363000 976 2337 2 chrUn.!!$R1 1361
11 TraesCS5B01G462700 chrUn 49379481 49380491 1010 False 291.500000 407 77.618500 1370 2369 2 chrUn.!!$F2 999

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.032515 TCCCTTGCCTCTCCGATGTA 60.033 55.0 0.00 0.0 0.00 2.29 F
246 247 0.033228 GGAGATGATGGAGCTCGGTG 59.967 60.0 7.83 0.0 38.05 4.94 F
256 257 0.033504 GAGCTCGGTGAAGGTTGTCA 59.966 55.0 0.00 0.0 0.00 3.58 F
1725 2318 1.049289 GGATCCTGCTACCTCCCGTT 61.049 60.0 3.84 0.0 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2574 0.674895 GGCAGCAGTTCGTCCTTGAT 60.675 55.000 0.00 0.0 0.0 2.57 R
2113 2754 2.357034 GAGCACGAACGGGAGCAA 60.357 61.111 0.00 0.0 0.0 3.91 R
2253 2894 2.352032 CGCCTTCCCTTCCTCGTCT 61.352 63.158 0.00 0.0 0.0 4.18 R
3035 4742 1.303643 GGCCCAAGGGACAAGTCAG 60.304 63.158 9.92 0.0 44.5 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.283060 CACTGGCTAACTTACACACAATC 57.717 43.478 0.00 0.00 0.00 2.67
23 24 4.997395 CACTGGCTAACTTACACACAATCT 59.003 41.667 0.00 0.00 0.00 2.40
24 25 5.120830 CACTGGCTAACTTACACACAATCTC 59.879 44.000 0.00 0.00 0.00 2.75
25 26 5.221641 ACTGGCTAACTTACACACAATCTCA 60.222 40.000 0.00 0.00 0.00 3.27
26 27 5.804639 TGGCTAACTTACACACAATCTCAT 58.195 37.500 0.00 0.00 0.00 2.90
27 28 6.941857 TGGCTAACTTACACACAATCTCATA 58.058 36.000 0.00 0.00 0.00 2.15
28 29 6.816640 TGGCTAACTTACACACAATCTCATAC 59.183 38.462 0.00 0.00 0.00 2.39
29 30 6.019801 GGCTAACTTACACACAATCTCATACG 60.020 42.308 0.00 0.00 0.00 3.06
30 31 6.530534 GCTAACTTACACACAATCTCATACGT 59.469 38.462 0.00 0.00 0.00 3.57
31 32 6.706055 AACTTACACACAATCTCATACGTG 57.294 37.500 0.00 0.00 35.48 4.49
32 33 6.020971 ACTTACACACAATCTCATACGTGA 57.979 37.500 0.00 0.00 33.56 4.35
36 37 3.614176 CACACAATCTCATACGTGAGGTG 59.386 47.826 0.00 4.05 45.03 4.00
37 38 3.258372 ACACAATCTCATACGTGAGGTGT 59.742 43.478 0.00 4.67 45.03 4.16
38 39 3.614176 CACAATCTCATACGTGAGGTGTG 59.386 47.826 19.17 19.17 45.03 3.82
39 40 3.258372 ACAATCTCATACGTGAGGTGTGT 59.742 43.478 0.00 0.33 45.03 3.72
40 41 3.859961 CAATCTCATACGTGAGGTGTGTC 59.140 47.826 0.00 0.00 45.03 3.67
41 42 2.279582 CTCATACGTGAGGTGTGTCC 57.720 55.000 0.00 0.00 46.56 4.02
42 43 0.524414 TCATACGTGAGGTGTGTCCG 59.476 55.000 0.00 0.00 38.72 4.79
43 44 0.457853 CATACGTGAGGTGTGTCCGG 60.458 60.000 0.00 0.00 41.99 5.14
44 45 0.896940 ATACGTGAGGTGTGTCCGGT 60.897 55.000 0.00 0.00 41.99 5.28
45 46 0.250684 TACGTGAGGTGTGTCCGGTA 60.251 55.000 0.00 0.00 41.99 4.02
46 47 1.080974 CGTGAGGTGTGTCCGGTAC 60.081 63.158 0.00 2.66 41.99 3.34
47 48 1.798234 CGTGAGGTGTGTCCGGTACA 61.798 60.000 0.00 5.71 41.99 2.90
48 49 0.606604 GTGAGGTGTGTCCGGTACAT 59.393 55.000 15.36 3.23 41.10 2.29
49 50 1.001633 GTGAGGTGTGTCCGGTACATT 59.998 52.381 15.36 8.70 41.10 2.71
50 51 2.231964 GTGAGGTGTGTCCGGTACATTA 59.768 50.000 15.36 4.41 41.10 1.90
51 52 3.101437 TGAGGTGTGTCCGGTACATTAT 58.899 45.455 15.36 6.70 41.10 1.28
52 53 3.118920 TGAGGTGTGTCCGGTACATTATG 60.119 47.826 15.36 0.00 41.10 1.90
53 54 3.101437 AGGTGTGTCCGGTACATTATGA 58.899 45.455 15.36 0.00 41.10 2.15
54 55 3.132289 AGGTGTGTCCGGTACATTATGAG 59.868 47.826 15.36 0.00 41.10 2.90
55 56 2.864343 GTGTGTCCGGTACATTATGAGC 59.136 50.000 15.36 0.59 41.10 4.26
56 57 2.498078 TGTGTCCGGTACATTATGAGCA 59.502 45.455 0.00 0.00 41.10 4.26
57 58 2.864343 GTGTCCGGTACATTATGAGCAC 59.136 50.000 0.00 0.00 41.10 4.40
58 59 2.159014 TGTCCGGTACATTATGAGCACC 60.159 50.000 0.00 2.57 31.43 5.01
59 60 2.102588 GTCCGGTACATTATGAGCACCT 59.897 50.000 0.00 0.00 0.00 4.00
60 61 2.364324 TCCGGTACATTATGAGCACCTC 59.636 50.000 0.00 0.00 0.00 3.85
61 62 2.365617 CCGGTACATTATGAGCACCTCT 59.634 50.000 0.00 0.00 0.00 3.69
62 63 3.181465 CCGGTACATTATGAGCACCTCTT 60.181 47.826 0.00 0.00 0.00 2.85
63 64 4.038763 CCGGTACATTATGAGCACCTCTTA 59.961 45.833 0.00 0.00 0.00 2.10
64 65 5.279506 CCGGTACATTATGAGCACCTCTTAT 60.280 44.000 0.00 0.00 0.00 1.73
65 66 6.223852 CGGTACATTATGAGCACCTCTTATT 58.776 40.000 0.00 0.00 0.00 1.40
66 67 7.375834 CGGTACATTATGAGCACCTCTTATTA 58.624 38.462 0.00 0.00 0.00 0.98
67 68 7.328737 CGGTACATTATGAGCACCTCTTATTAC 59.671 40.741 0.00 0.00 0.00 1.89
68 69 7.603024 GGTACATTATGAGCACCTCTTATTACC 59.397 40.741 0.00 0.00 0.00 2.85
69 70 7.136822 ACATTATGAGCACCTCTTATTACCA 57.863 36.000 0.00 0.00 0.00 3.25
70 71 7.749666 ACATTATGAGCACCTCTTATTACCAT 58.250 34.615 0.00 0.00 0.00 3.55
71 72 8.220559 ACATTATGAGCACCTCTTATTACCATT 58.779 33.333 0.00 0.00 0.00 3.16
72 73 9.071276 CATTATGAGCACCTCTTATTACCATTT 57.929 33.333 0.00 0.00 0.00 2.32
73 74 9.646522 ATTATGAGCACCTCTTATTACCATTTT 57.353 29.630 0.00 0.00 0.00 1.82
74 75 7.961326 ATGAGCACCTCTTATTACCATTTTT 57.039 32.000 0.00 0.00 0.00 1.94
95 96 7.495135 TTTTTCGGAACCTTTACTATTCGTT 57.505 32.000 0.00 0.00 0.00 3.85
96 97 6.710692 TTTCGGAACCTTTACTATTCGTTC 57.289 37.500 0.00 0.00 33.63 3.95
97 98 4.747810 TCGGAACCTTTACTATTCGTTCC 58.252 43.478 7.12 7.12 45.89 3.62
98 99 4.463891 TCGGAACCTTTACTATTCGTTCCT 59.536 41.667 13.66 0.00 46.74 3.36
99 100 4.802563 CGGAACCTTTACTATTCGTTCCTC 59.197 45.833 13.66 0.00 46.74 3.71
100 101 5.622914 CGGAACCTTTACTATTCGTTCCTCA 60.623 44.000 13.66 0.00 46.74 3.86
101 102 6.346896 GGAACCTTTACTATTCGTTCCTCAT 58.653 40.000 9.48 0.00 45.88 2.90
102 103 6.258068 GGAACCTTTACTATTCGTTCCTCATG 59.742 42.308 9.48 0.00 45.88 3.07
103 104 6.540438 ACCTTTACTATTCGTTCCTCATGA 57.460 37.500 0.00 0.00 0.00 3.07
104 105 6.942976 ACCTTTACTATTCGTTCCTCATGAA 58.057 36.000 0.00 0.00 34.75 2.57
105 106 7.042335 ACCTTTACTATTCGTTCCTCATGAAG 58.958 38.462 0.00 0.00 33.70 3.02
106 107 7.042335 CCTTTACTATTCGTTCCTCATGAAGT 58.958 38.462 0.00 0.00 33.70 3.01
107 108 8.195436 CCTTTACTATTCGTTCCTCATGAAGTA 58.805 37.037 0.00 0.00 33.70 2.24
108 109 9.751542 CTTTACTATTCGTTCCTCATGAAGTAT 57.248 33.333 0.00 0.00 33.70 2.12
112 113 8.915036 ACTATTCGTTCCTCATGAAGTATTACT 58.085 33.333 0.00 0.00 33.70 2.24
113 114 9.751542 CTATTCGTTCCTCATGAAGTATTACTT 57.248 33.333 8.81 8.81 41.95 2.24
115 116 8.842358 TTCGTTCCTCATGAAGTATTACTTTT 57.158 30.769 10.32 0.00 38.80 2.27
116 117 8.475331 TCGTTCCTCATGAAGTATTACTTTTC 57.525 34.615 10.32 0.11 38.80 2.29
117 118 8.311836 TCGTTCCTCATGAAGTATTACTTTTCT 58.688 33.333 10.32 0.00 38.80 2.52
118 119 8.596380 CGTTCCTCATGAAGTATTACTTTTCTC 58.404 37.037 10.32 0.00 38.80 2.87
119 120 9.436957 GTTCCTCATGAAGTATTACTTTTCTCA 57.563 33.333 10.32 4.72 38.80 3.27
126 127 9.620259 ATGAAGTATTACTTTTCTCATTCCTCC 57.380 33.333 10.32 0.00 38.80 4.30
127 128 7.764443 TGAAGTATTACTTTTCTCATTCCTCCG 59.236 37.037 10.32 0.00 38.80 4.63
128 129 7.184067 AGTATTACTTTTCTCATTCCTCCGT 57.816 36.000 0.00 0.00 0.00 4.69
129 130 7.621796 AGTATTACTTTTCTCATTCCTCCGTT 58.378 34.615 0.00 0.00 0.00 4.44
130 131 6.986904 ATTACTTTTCTCATTCCTCCGTTC 57.013 37.500 0.00 0.00 0.00 3.95
131 132 4.625607 ACTTTTCTCATTCCTCCGTTCT 57.374 40.909 0.00 0.00 0.00 3.01
132 133 5.740290 ACTTTTCTCATTCCTCCGTTCTA 57.260 39.130 0.00 0.00 0.00 2.10
133 134 6.301169 ACTTTTCTCATTCCTCCGTTCTAT 57.699 37.500 0.00 0.00 0.00 1.98
134 135 6.712276 ACTTTTCTCATTCCTCCGTTCTATT 58.288 36.000 0.00 0.00 0.00 1.73
135 136 6.595716 ACTTTTCTCATTCCTCCGTTCTATTG 59.404 38.462 0.00 0.00 0.00 1.90
136 137 4.060038 TCTCATTCCTCCGTTCTATTGC 57.940 45.455 0.00 0.00 0.00 3.56
137 138 3.134458 CTCATTCCTCCGTTCTATTGCC 58.866 50.000 0.00 0.00 0.00 4.52
138 139 2.503765 TCATTCCTCCGTTCTATTGCCA 59.496 45.455 0.00 0.00 0.00 4.92
139 140 2.396590 TTCCTCCGTTCTATTGCCAC 57.603 50.000 0.00 0.00 0.00 5.01
140 141 1.568504 TCCTCCGTTCTATTGCCACT 58.431 50.000 0.00 0.00 0.00 4.00
141 142 1.480954 TCCTCCGTTCTATTGCCACTC 59.519 52.381 0.00 0.00 0.00 3.51
142 143 1.473434 CCTCCGTTCTATTGCCACTCC 60.473 57.143 0.00 0.00 0.00 3.85
143 144 1.482593 CTCCGTTCTATTGCCACTCCT 59.517 52.381 0.00 0.00 0.00 3.69
144 145 2.693591 CTCCGTTCTATTGCCACTCCTA 59.306 50.000 0.00 0.00 0.00 2.94
145 146 2.429610 TCCGTTCTATTGCCACTCCTAC 59.570 50.000 0.00 0.00 0.00 3.18
146 147 2.483188 CCGTTCTATTGCCACTCCTACC 60.483 54.545 0.00 0.00 0.00 3.18
147 148 2.798499 CGTTCTATTGCCACTCCTACCG 60.798 54.545 0.00 0.00 0.00 4.02
148 149 2.429610 GTTCTATTGCCACTCCTACCGA 59.570 50.000 0.00 0.00 0.00 4.69
149 150 2.958818 TCTATTGCCACTCCTACCGAT 58.041 47.619 0.00 0.00 0.00 4.18
150 151 2.891580 TCTATTGCCACTCCTACCGATC 59.108 50.000 0.00 0.00 0.00 3.69
151 152 0.759346 ATTGCCACTCCTACCGATCC 59.241 55.000 0.00 0.00 0.00 3.36
152 153 0.616395 TTGCCACTCCTACCGATCCA 60.616 55.000 0.00 0.00 0.00 3.41
153 154 0.616395 TGCCACTCCTACCGATCCAA 60.616 55.000 0.00 0.00 0.00 3.53
154 155 0.179081 GCCACTCCTACCGATCCAAC 60.179 60.000 0.00 0.00 0.00 3.77
155 156 0.464452 CCACTCCTACCGATCCAACC 59.536 60.000 0.00 0.00 0.00 3.77
156 157 1.486211 CACTCCTACCGATCCAACCT 58.514 55.000 0.00 0.00 0.00 3.50
157 158 1.409427 CACTCCTACCGATCCAACCTC 59.591 57.143 0.00 0.00 0.00 3.85
158 159 1.288335 ACTCCTACCGATCCAACCTCT 59.712 52.381 0.00 0.00 0.00 3.69
159 160 2.512896 ACTCCTACCGATCCAACCTCTA 59.487 50.000 0.00 0.00 0.00 2.43
160 161 2.885894 CTCCTACCGATCCAACCTCTAC 59.114 54.545 0.00 0.00 0.00 2.59
161 162 1.607628 CCTACCGATCCAACCTCTACG 59.392 57.143 0.00 0.00 0.00 3.51
162 163 1.001597 CTACCGATCCAACCTCTACGC 60.002 57.143 0.00 0.00 0.00 4.42
163 164 0.683504 ACCGATCCAACCTCTACGCT 60.684 55.000 0.00 0.00 0.00 5.07
164 165 1.315690 CCGATCCAACCTCTACGCTA 58.684 55.000 0.00 0.00 0.00 4.26
165 166 1.267261 CCGATCCAACCTCTACGCTAG 59.733 57.143 0.00 0.00 0.00 3.42
166 167 1.948145 CGATCCAACCTCTACGCTAGT 59.052 52.381 0.00 0.00 0.00 2.57
167 168 3.136763 CGATCCAACCTCTACGCTAGTA 58.863 50.000 0.00 0.00 0.00 1.82
168 169 3.562973 CGATCCAACCTCTACGCTAGTAA 59.437 47.826 0.00 0.00 31.59 2.24
169 170 4.319622 CGATCCAACCTCTACGCTAGTAAG 60.320 50.000 0.00 0.00 31.59 2.34
170 171 3.285484 TCCAACCTCTACGCTAGTAAGG 58.715 50.000 0.00 0.00 37.26 2.69
171 172 2.223758 CCAACCTCTACGCTAGTAAGGC 60.224 54.545 0.00 0.00 35.97 4.35
172 173 2.426024 CAACCTCTACGCTAGTAAGGCA 59.574 50.000 0.00 0.00 35.97 4.75
173 174 2.022934 ACCTCTACGCTAGTAAGGCAC 58.977 52.381 0.00 0.00 35.97 5.01
175 176 2.291190 CCTCTACGCTAGTAAGGCACTC 59.709 54.545 0.00 0.00 38.49 3.51
176 177 1.938577 TCTACGCTAGTAAGGCACTCG 59.061 52.381 0.00 0.00 38.49 4.18
177 178 1.938577 CTACGCTAGTAAGGCACTCGA 59.061 52.381 0.00 0.00 38.49 4.04
178 179 1.390565 ACGCTAGTAAGGCACTCGAT 58.609 50.000 0.00 0.00 38.49 3.59
179 180 1.065701 ACGCTAGTAAGGCACTCGATG 59.934 52.381 0.00 0.00 38.49 3.84
187 188 2.507992 GCACTCGATGCGCTCACT 60.508 61.111 9.73 0.00 46.55 3.41
188 189 2.512301 GCACTCGATGCGCTCACTC 61.512 63.158 9.73 0.00 46.55 3.51
189 190 2.101185 ACTCGATGCGCTCACTCG 59.899 61.111 9.73 12.11 0.00 4.18
197 198 2.887568 CGCTCACTCGCCACATCC 60.888 66.667 0.00 0.00 0.00 3.51
198 199 2.512515 GCTCACTCGCCACATCCC 60.513 66.667 0.00 0.00 0.00 3.85
199 200 3.023949 GCTCACTCGCCACATCCCT 62.024 63.158 0.00 0.00 0.00 4.20
200 201 1.599047 CTCACTCGCCACATCCCTT 59.401 57.895 0.00 0.00 0.00 3.95
201 202 0.742281 CTCACTCGCCACATCCCTTG 60.742 60.000 0.00 0.00 0.00 3.61
202 203 2.045926 ACTCGCCACATCCCTTGC 60.046 61.111 0.00 0.00 0.00 4.01
203 204 2.825836 CTCGCCACATCCCTTGCC 60.826 66.667 0.00 0.00 0.00 4.52
204 205 3.329889 TCGCCACATCCCTTGCCT 61.330 61.111 0.00 0.00 0.00 4.75
205 206 2.825836 CGCCACATCCCTTGCCTC 60.826 66.667 0.00 0.00 0.00 4.70
206 207 2.679716 GCCACATCCCTTGCCTCT 59.320 61.111 0.00 0.00 0.00 3.69
207 208 1.452833 GCCACATCCCTTGCCTCTC 60.453 63.158 0.00 0.00 0.00 3.20
208 209 1.225704 CCACATCCCTTGCCTCTCC 59.774 63.158 0.00 0.00 0.00 3.71
209 210 1.153289 CACATCCCTTGCCTCTCCG 60.153 63.158 0.00 0.00 0.00 4.63
210 211 1.306141 ACATCCCTTGCCTCTCCGA 60.306 57.895 0.00 0.00 0.00 4.55
211 212 0.692419 ACATCCCTTGCCTCTCCGAT 60.692 55.000 0.00 0.00 0.00 4.18
212 213 0.250209 CATCCCTTGCCTCTCCGATG 60.250 60.000 0.00 0.00 0.00 3.84
213 214 0.692419 ATCCCTTGCCTCTCCGATGT 60.692 55.000 0.00 0.00 0.00 3.06
214 215 0.032515 TCCCTTGCCTCTCCGATGTA 60.033 55.000 0.00 0.00 0.00 2.29
215 216 0.830648 CCCTTGCCTCTCCGATGTAA 59.169 55.000 0.00 0.00 0.00 2.41
216 217 1.473434 CCCTTGCCTCTCCGATGTAAC 60.473 57.143 0.00 0.00 0.00 2.50
217 218 1.207089 CCTTGCCTCTCCGATGTAACA 59.793 52.381 0.00 0.00 0.00 2.41
218 219 2.271800 CTTGCCTCTCCGATGTAACAC 58.728 52.381 0.00 0.00 0.00 3.32
219 220 0.535335 TGCCTCTCCGATGTAACACC 59.465 55.000 0.00 0.00 0.00 4.16
220 221 0.824759 GCCTCTCCGATGTAACACCT 59.175 55.000 0.00 0.00 0.00 4.00
221 222 1.471676 GCCTCTCCGATGTAACACCTG 60.472 57.143 0.00 0.00 0.00 4.00
222 223 2.100197 CCTCTCCGATGTAACACCTGA 58.900 52.381 0.00 0.00 0.00 3.86
223 224 2.159226 CCTCTCCGATGTAACACCTGAC 60.159 54.545 0.00 0.00 0.00 3.51
224 225 1.822990 TCTCCGATGTAACACCTGACC 59.177 52.381 0.00 0.00 0.00 4.02
225 226 1.548719 CTCCGATGTAACACCTGACCA 59.451 52.381 0.00 0.00 0.00 4.02
226 227 2.168521 CTCCGATGTAACACCTGACCAT 59.831 50.000 0.00 0.00 0.00 3.55
227 228 2.093711 TCCGATGTAACACCTGACCATG 60.094 50.000 0.00 0.00 0.00 3.66
228 229 2.279741 CGATGTAACACCTGACCATGG 58.720 52.381 11.19 11.19 0.00 3.66
229 230 2.093711 CGATGTAACACCTGACCATGGA 60.094 50.000 21.47 0.00 0.00 3.41
230 231 3.535561 GATGTAACACCTGACCATGGAG 58.464 50.000 21.47 6.05 0.00 3.86
231 232 2.615391 TGTAACACCTGACCATGGAGA 58.385 47.619 21.47 2.67 0.00 3.71
232 233 3.181329 TGTAACACCTGACCATGGAGAT 58.819 45.455 21.47 0.00 0.00 2.75
233 234 2.795231 AACACCTGACCATGGAGATG 57.205 50.000 21.47 5.93 0.00 2.90
234 235 1.956869 ACACCTGACCATGGAGATGA 58.043 50.000 21.47 0.00 0.00 2.92
235 236 2.485659 ACACCTGACCATGGAGATGAT 58.514 47.619 21.47 0.00 0.00 2.45
236 237 2.172082 ACACCTGACCATGGAGATGATG 59.828 50.000 21.47 11.51 0.00 3.07
237 238 1.773052 ACCTGACCATGGAGATGATGG 59.227 52.381 21.47 12.16 45.26 3.51
238 239 2.052468 CCTGACCATGGAGATGATGGA 58.948 52.381 21.47 0.00 42.81 3.41
239 240 2.038689 CCTGACCATGGAGATGATGGAG 59.961 54.545 21.47 0.23 42.81 3.86
240 241 1.419012 TGACCATGGAGATGATGGAGC 59.581 52.381 21.47 0.00 42.81 4.70
241 242 1.698532 GACCATGGAGATGATGGAGCT 59.301 52.381 21.47 0.00 42.81 4.09
242 243 1.698532 ACCATGGAGATGATGGAGCTC 59.301 52.381 21.47 4.71 42.81 4.09
243 244 1.337917 CCATGGAGATGATGGAGCTCG 60.338 57.143 5.56 0.00 42.81 5.03
244 245 0.975135 ATGGAGATGATGGAGCTCGG 59.025 55.000 7.83 0.00 38.05 4.63
245 246 0.397675 TGGAGATGATGGAGCTCGGT 60.398 55.000 7.83 0.00 38.05 4.69
246 247 0.033228 GGAGATGATGGAGCTCGGTG 59.967 60.000 7.83 0.00 38.05 4.94
247 248 1.035923 GAGATGATGGAGCTCGGTGA 58.964 55.000 7.83 0.00 0.00 4.02
248 249 1.410517 GAGATGATGGAGCTCGGTGAA 59.589 52.381 7.83 0.00 0.00 3.18
249 250 1.411977 AGATGATGGAGCTCGGTGAAG 59.588 52.381 7.83 0.00 0.00 3.02
250 251 0.467384 ATGATGGAGCTCGGTGAAGG 59.533 55.000 7.83 0.00 0.00 3.46
251 252 0.904865 TGATGGAGCTCGGTGAAGGT 60.905 55.000 7.83 0.00 0.00 3.50
252 253 0.250513 GATGGAGCTCGGTGAAGGTT 59.749 55.000 7.83 0.00 0.00 3.50
253 254 0.036010 ATGGAGCTCGGTGAAGGTTG 60.036 55.000 7.83 0.00 0.00 3.77
254 255 1.371558 GGAGCTCGGTGAAGGTTGT 59.628 57.895 7.83 0.00 0.00 3.32
255 256 0.670854 GGAGCTCGGTGAAGGTTGTC 60.671 60.000 7.83 0.00 0.00 3.18
256 257 0.033504 GAGCTCGGTGAAGGTTGTCA 59.966 55.000 0.00 0.00 0.00 3.58
596 597 3.358111 TTTCCACTTGGTGTTCAGTGA 57.642 42.857 0.79 0.00 34.50 3.41
597 598 2.620251 TCCACTTGGTGTTCAGTGAG 57.380 50.000 0.79 0.00 34.50 3.51
598 599 1.837439 TCCACTTGGTGTTCAGTGAGT 59.163 47.619 0.79 0.00 34.50 3.41
609 610 3.324846 TGTTCAGTGAGTGTCATTAGGCT 59.675 43.478 0.00 0.00 0.00 4.58
631 632 6.587608 GGCTTGATTCTTCGAAACAATGAAAT 59.412 34.615 0.00 0.00 0.00 2.17
632 633 7.411157 GGCTTGATTCTTCGAAACAATGAAATG 60.411 37.037 0.00 0.00 0.00 2.32
633 634 7.115378 GCTTGATTCTTCGAAACAATGAAATGT 59.885 33.333 0.00 0.00 34.24 2.71
634 635 7.856492 TGATTCTTCGAAACAATGAAATGTG 57.144 32.000 0.00 0.00 32.81 3.21
636 637 4.545610 TCTTCGAAACAATGAAATGTGGC 58.454 39.130 0.00 0.00 32.81 5.01
637 638 3.998099 TCGAAACAATGAAATGTGGCA 57.002 38.095 0.00 0.00 32.81 4.92
638 639 3.637432 TCGAAACAATGAAATGTGGCAC 58.363 40.909 11.55 11.55 32.81 5.01
664 670 6.347079 GCAAAGATGAAACATCCAATGTGTTG 60.347 38.462 7.93 4.09 44.07 3.33
698 704 9.507329 CAAAGACAATATACCAGGTGCTATATT 57.493 33.333 0.76 1.21 0.00 1.28
740 746 4.735369 AGTGGTATTGTGTCAAATTCCCA 58.265 39.130 0.00 0.00 0.00 4.37
743 749 7.125391 AGTGGTATTGTGTCAAATTCCCATAT 58.875 34.615 0.00 0.00 0.00 1.78
764 773 9.040259 CCATATCTCTGATCTCCCACTTTATTA 57.960 37.037 0.00 0.00 0.00 0.98
790 799 9.026121 ACCAAGCATCTATCTACTCGTATAATT 57.974 33.333 0.00 0.00 0.00 1.40
829 838 2.360100 CTGCTGCTGCTCCTGCTT 60.360 61.111 17.00 0.00 40.48 3.91
848 857 6.245115 TGCTTAAATCATAGCATTGATCGG 57.755 37.500 2.31 0.00 42.12 4.18
915 924 2.904866 ACCAAAGCTTTCGCGCCA 60.905 55.556 9.23 0.00 42.32 5.69
916 925 2.268076 ACCAAAGCTTTCGCGCCAT 61.268 52.632 9.23 0.00 42.32 4.40
917 926 1.080569 CCAAAGCTTTCGCGCCATT 60.081 52.632 9.23 0.00 42.32 3.16
933 942 1.066858 CCATTATCGTCCCTGATCCCG 60.067 57.143 0.00 0.00 0.00 5.14
941 950 2.511600 CCTGATCCCGCCGTTCAC 60.512 66.667 0.00 0.00 0.00 3.18
948 964 1.153823 CCCGCCGTTCACAGAGTAG 60.154 63.158 0.00 0.00 0.00 2.57
1140 1161 3.322466 CACCTGTCCCCTCGCCTT 61.322 66.667 0.00 0.00 0.00 4.35
1478 2067 3.745803 GGAGGACTTCGCGGTCGT 61.746 66.667 6.13 8.46 37.12 4.34
1725 2318 1.049289 GGATCCTGCTACCTCCCGTT 61.049 60.000 3.84 0.00 0.00 4.44
1894 2523 2.182842 GTGCGCTTCCTATGGGCTG 61.183 63.158 9.73 0.00 42.68 4.85
1902 2531 1.128200 TCCTATGGGCTGTACGCAAT 58.872 50.000 10.92 7.02 45.40 3.56
2127 2768 2.604174 GGTGTTGCTCCCGTTCGTG 61.604 63.158 0.00 0.00 0.00 4.35
2319 2963 1.377856 GCTTCTCAAGGACCAGGGC 60.378 63.158 0.00 0.00 0.00 5.19
2412 3056 3.972133 TCCAGATTTGGCAAGATCACAT 58.028 40.909 18.17 3.11 44.63 3.21
2418 3062 4.782019 TTTGGCAAGATCACATGGTTAC 57.218 40.909 0.00 0.00 0.00 2.50
2420 3064 1.670811 GGCAAGATCACATGGTTACCG 59.329 52.381 0.00 0.00 0.00 4.02
2423 3067 3.181510 GCAAGATCACATGGTTACCGAAC 60.182 47.826 0.00 0.00 34.56 3.95
2441 3085 3.321497 GAACTCGAGTGAGCATTTGTCT 58.679 45.455 20.85 0.00 46.69 3.41
2444 3088 5.078411 ACTCGAGTGAGCATTTGTCTATT 57.922 39.130 19.30 0.00 46.69 1.73
2445 3089 5.105752 ACTCGAGTGAGCATTTGTCTATTC 58.894 41.667 19.30 0.00 46.69 1.75
2446 3090 4.433615 TCGAGTGAGCATTTGTCTATTCC 58.566 43.478 0.00 0.00 0.00 3.01
2447 3091 4.081697 TCGAGTGAGCATTTGTCTATTCCA 60.082 41.667 0.00 0.00 0.00 3.53
2448 3092 4.813161 CGAGTGAGCATTTGTCTATTCCAT 59.187 41.667 0.00 0.00 0.00 3.41
2449 3093 5.050499 CGAGTGAGCATTTGTCTATTCCATC 60.050 44.000 0.00 0.00 0.00 3.51
2450 3094 4.813161 AGTGAGCATTTGTCTATTCCATCG 59.187 41.667 0.00 0.00 0.00 3.84
2451 3095 4.811024 GTGAGCATTTGTCTATTCCATCGA 59.189 41.667 0.00 0.00 0.00 3.59
2452 3096 5.468072 GTGAGCATTTGTCTATTCCATCGAT 59.532 40.000 0.00 0.00 0.00 3.59
2457 3101 6.425114 GCATTTGTCTATTCCATCGATGTACT 59.575 38.462 23.27 5.36 0.00 2.73
2458 3102 7.359598 GCATTTGTCTATTCCATCGATGTACTC 60.360 40.741 23.27 8.07 0.00 2.59
2460 3104 4.523173 TGTCTATTCCATCGATGTACTCCC 59.477 45.833 23.27 6.86 0.00 4.30
2461 3105 4.767928 GTCTATTCCATCGATGTACTCCCT 59.232 45.833 23.27 4.28 0.00 4.20
2462 3106 5.010933 TCTATTCCATCGATGTACTCCCTC 58.989 45.833 23.27 0.00 0.00 4.30
2465 3109 0.598562 CATCGATGTACTCCCTCCGG 59.401 60.000 17.50 0.00 0.00 5.14
2466 3110 0.185416 ATCGATGTACTCCCTCCGGT 59.815 55.000 0.00 0.00 0.00 5.28
2467 3111 0.465097 TCGATGTACTCCCTCCGGTC 60.465 60.000 0.00 0.00 0.00 4.79
2468 3112 1.453762 CGATGTACTCCCTCCGGTCC 61.454 65.000 0.00 0.00 0.00 4.46
2469 3113 0.106116 GATGTACTCCCTCCGGTCCT 60.106 60.000 0.00 0.00 0.00 3.85
2470 3114 1.144503 GATGTACTCCCTCCGGTCCTA 59.855 57.143 0.00 0.00 0.00 2.94
2471 3115 1.002069 TGTACTCCCTCCGGTCCTAA 58.998 55.000 0.00 0.00 0.00 2.69
2472 3116 1.358787 TGTACTCCCTCCGGTCCTAAA 59.641 52.381 0.00 0.00 0.00 1.85
2473 3117 2.023695 TGTACTCCCTCCGGTCCTAAAT 60.024 50.000 0.00 0.00 0.00 1.40
2474 3118 3.205056 TGTACTCCCTCCGGTCCTAAATA 59.795 47.826 0.00 0.00 0.00 1.40
2476 3120 4.754411 ACTCCCTCCGGTCCTAAATATA 57.246 45.455 0.00 0.00 0.00 0.86
2477 3121 5.083953 ACTCCCTCCGGTCCTAAATATAA 57.916 43.478 0.00 0.00 0.00 0.98
2480 3124 5.082425 TCCCTCCGGTCCTAAATATAAGTC 58.918 45.833 0.00 0.00 0.00 3.01
2482 3126 5.543020 CCCTCCGGTCCTAAATATAAGTCTT 59.457 44.000 0.00 0.00 0.00 3.01
2483 3127 6.042897 CCCTCCGGTCCTAAATATAAGTCTTT 59.957 42.308 0.00 0.00 0.00 2.52
2484 3128 7.153315 CCTCCGGTCCTAAATATAAGTCTTTC 58.847 42.308 0.00 0.00 0.00 2.62
2487 3131 9.075678 TCCGGTCCTAAATATAAGTCTTTCTAG 57.924 37.037 0.00 0.00 0.00 2.43
2488 3132 9.075678 CCGGTCCTAAATATAAGTCTTTCTAGA 57.924 37.037 0.00 0.00 0.00 2.43
2503 3147 9.127277 AGTCTTTCTAGATATTCCACTACAGAC 57.873 37.037 0.00 0.00 31.86 3.51
2504 3148 9.127277 GTCTTTCTAGATATTCCACTACAGACT 57.873 37.037 0.00 0.00 31.86 3.24
2515 3159 6.798315 TCCACTACAGACTATATACGAAGC 57.202 41.667 0.00 0.00 0.00 3.86
2516 3160 6.293698 TCCACTACAGACTATATACGAAGCA 58.706 40.000 0.00 0.00 0.00 3.91
2517 3161 6.769341 TCCACTACAGACTATATACGAAGCAA 59.231 38.462 0.00 0.00 0.00 3.91
2518 3162 7.283807 TCCACTACAGACTATATACGAAGCAAA 59.716 37.037 0.00 0.00 0.00 3.68
2519 3163 7.919091 CCACTACAGACTATATACGAAGCAAAA 59.081 37.037 0.00 0.00 0.00 2.44
2520 3164 9.464714 CACTACAGACTATATACGAAGCAAAAT 57.535 33.333 0.00 0.00 0.00 1.82
2534 3178 8.950403 ACGAAGCAAAATAAGTGAATCTAAAC 57.050 30.769 0.00 0.00 0.00 2.01
2535 3179 8.784043 ACGAAGCAAAATAAGTGAATCTAAACT 58.216 29.630 0.00 0.00 0.00 2.66
2536 3180 9.267096 CGAAGCAAAATAAGTGAATCTAAACTC 57.733 33.333 0.00 0.00 0.00 3.01
2576 3220 6.911250 ATATCCATACGTAGTCCACATTGA 57.089 37.500 0.08 0.00 43.93 2.57
2577 3221 5.607939 ATCCATACGTAGTCCACATTGAA 57.392 39.130 0.08 0.00 43.93 2.69
2578 3222 5.408880 TCCATACGTAGTCCACATTGAAA 57.591 39.130 0.08 0.00 43.93 2.69
2579 3223 5.984725 TCCATACGTAGTCCACATTGAAAT 58.015 37.500 0.08 0.00 43.93 2.17
2580 3224 6.046593 TCCATACGTAGTCCACATTGAAATC 58.953 40.000 0.08 0.00 43.93 2.17
2581 3225 6.049149 CCATACGTAGTCCACATTGAAATCT 58.951 40.000 0.08 0.00 43.93 2.40
2582 3226 6.201044 CCATACGTAGTCCACATTGAAATCTC 59.799 42.308 0.08 0.00 43.93 2.75
2583 3227 5.407407 ACGTAGTCCACATTGAAATCTCT 57.593 39.130 0.00 0.00 29.74 3.10
2584 3228 6.525578 ACGTAGTCCACATTGAAATCTCTA 57.474 37.500 0.00 0.00 29.74 2.43
2585 3229 6.931838 ACGTAGTCCACATTGAAATCTCTAA 58.068 36.000 0.00 0.00 29.74 2.10
2586 3230 7.383687 ACGTAGTCCACATTGAAATCTCTAAA 58.616 34.615 0.00 0.00 29.74 1.85
2587 3231 7.876068 ACGTAGTCCACATTGAAATCTCTAAAA 59.124 33.333 0.00 0.00 29.74 1.52
2588 3232 8.717821 CGTAGTCCACATTGAAATCTCTAAAAA 58.282 33.333 0.00 0.00 0.00 1.94
2590 3234 8.924511 AGTCCACATTGAAATCTCTAAAAAGA 57.075 30.769 0.00 0.00 0.00 2.52
2591 3235 8.787852 AGTCCACATTGAAATCTCTAAAAAGAC 58.212 33.333 0.00 0.00 0.00 3.01
2592 3236 8.787852 GTCCACATTGAAATCTCTAAAAAGACT 58.212 33.333 0.00 0.00 0.00 3.24
2593 3237 9.354673 TCCACATTGAAATCTCTAAAAAGACTT 57.645 29.630 0.00 0.00 0.00 3.01
2611 3255 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
2612 3256 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
2613 3257 8.855804 AGACTTATATTTAGGAACAGAGGGAA 57.144 34.615 0.00 0.00 0.00 3.97
2617 3261 9.945904 CTTATATTTAGGAACAGAGGGAATACC 57.054 37.037 0.00 0.00 40.67 2.73
2634 3278 7.097834 GGGAATACCTAATAATCCAGACGAAG 58.902 42.308 0.00 0.00 34.80 3.79
2635 3279 7.097834 GGAATACCTAATAATCCAGACGAAGG 58.902 42.308 0.00 0.00 33.47 3.46
2636 3280 4.957684 ACCTAATAATCCAGACGAAGGG 57.042 45.455 0.00 0.00 0.00 3.95
2637 3281 4.553678 ACCTAATAATCCAGACGAAGGGA 58.446 43.478 0.00 0.00 37.64 4.20
2650 3294 6.439599 CAGACGAAGGGAGTATATTGTACTG 58.560 44.000 0.00 0.00 0.00 2.74
2654 3298 9.224267 GACGAAGGGAGTATATTGTACTGTATA 57.776 37.037 0.00 0.00 0.00 1.47
2658 3302 9.548631 AAGGGAGTATATTGTACTGTATATGCT 57.451 33.333 0.00 10.90 33.96 3.79
2659 3303 8.972127 AGGGAGTATATTGTACTGTATATGCTG 58.028 37.037 13.88 0.00 32.22 4.41
2678 4197 7.744087 ATGCTGTACTTTGTATGAGTGAAAA 57.256 32.000 0.00 0.00 0.00 2.29
2804 4328 9.599056 TTATCCAAGGCCATATGATTTATTTGA 57.401 29.630 5.01 0.00 0.00 2.69
2805 4329 7.528996 TCCAAGGCCATATGATTTATTTGAG 57.471 36.000 5.01 0.00 0.00 3.02
2806 4330 7.068702 TCCAAGGCCATATGATTTATTTGAGT 58.931 34.615 5.01 0.00 0.00 3.41
2807 4331 8.224025 TCCAAGGCCATATGATTTATTTGAGTA 58.776 33.333 5.01 0.00 0.00 2.59
2808 4332 8.299570 CCAAGGCCATATGATTTATTTGAGTAC 58.700 37.037 5.01 0.00 0.00 2.73
2809 4333 8.299570 CAAGGCCATATGATTTATTTGAGTACC 58.700 37.037 5.01 0.00 0.00 3.34
2810 4334 7.526041 AGGCCATATGATTTATTTGAGTACCA 58.474 34.615 5.01 0.00 0.00 3.25
2824 4497 7.419711 TTTGAGTACCATCTAAGAGGTAAGG 57.580 40.000 0.00 0.00 41.71 2.69
2859 4532 9.823647 TTGGCAATATTTCTAAAACAAAACAGA 57.176 25.926 0.00 0.00 0.00 3.41
2876 4550 5.869649 AACAGACAAATATAATTGCCCCC 57.130 39.130 0.23 0.00 33.52 5.40
3019 4726 5.689383 TTCCTAGTGTTGTTTCATTGCTC 57.311 39.130 0.00 0.00 0.00 4.26
3028 4735 3.981211 TGTTTCATTGCTCTTTTGGCTC 58.019 40.909 0.00 0.00 0.00 4.70
3029 4736 3.384146 TGTTTCATTGCTCTTTTGGCTCA 59.616 39.130 0.00 0.00 0.00 4.26
3035 4742 5.697633 TCATTGCTCTTTTGGCTCAAATTTC 59.302 36.000 1.89 0.00 33.19 2.17
3072 4779 4.466015 GGGCCAGTCAATTTTTCTATTGGA 59.534 41.667 4.39 0.00 36.41 3.53
3080 4787 9.354673 AGTCAATTTTTCTATTGGACTTGAAGA 57.645 29.630 0.00 0.00 36.41 2.87
3101 4811 2.817844 ACCGTTACTCATTGCCCTTTTC 59.182 45.455 0.00 0.00 0.00 2.29
3108 4818 4.985538 ACTCATTGCCCTTTTCTCTGTTA 58.014 39.130 0.00 0.00 0.00 2.41
3119 4829 6.206634 CCCTTTTCTCTGTTAGCATGTGTTTA 59.793 38.462 0.00 0.00 0.00 2.01
3330 5050 5.510671 AGTTGTGTGCAAGTTTATTCTTCG 58.489 37.500 0.00 0.00 34.84 3.79
3333 5053 5.507077 TGTGTGCAAGTTTATTCTTCGTTC 58.493 37.500 0.00 0.00 0.00 3.95
3372 5092 4.955450 TGTAATGCCAATGCCACTAATTCT 59.045 37.500 0.00 0.00 36.33 2.40
3381 5101 6.603201 CCAATGCCACTAATTCTTTCTTCCTA 59.397 38.462 0.00 0.00 0.00 2.94
3382 5102 7.122650 CCAATGCCACTAATTCTTTCTTCCTAA 59.877 37.037 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.997395 AGATTGTGTGTAAGTTAGCCAGTG 59.003 41.667 0.00 0.00 0.00 3.66
1 2 5.221641 TGAGATTGTGTGTAAGTTAGCCAGT 60.222 40.000 0.00 0.00 0.00 4.00
2 3 5.237815 TGAGATTGTGTGTAAGTTAGCCAG 58.762 41.667 0.00 0.00 0.00 4.85
3 4 5.222079 TGAGATTGTGTGTAAGTTAGCCA 57.778 39.130 0.00 0.00 0.00 4.75
4 5 6.019801 CGTATGAGATTGTGTGTAAGTTAGCC 60.020 42.308 0.00 0.00 0.00 3.93
5 6 6.530534 ACGTATGAGATTGTGTGTAAGTTAGC 59.469 38.462 0.00 0.00 0.00 3.09
6 7 7.753580 TCACGTATGAGATTGTGTGTAAGTTAG 59.246 37.037 0.00 0.00 34.08 2.34
7 8 7.595604 TCACGTATGAGATTGTGTGTAAGTTA 58.404 34.615 0.00 0.00 34.08 2.24
8 9 6.452242 TCACGTATGAGATTGTGTGTAAGTT 58.548 36.000 0.00 0.00 34.08 2.66
9 10 6.020971 TCACGTATGAGATTGTGTGTAAGT 57.979 37.500 0.00 0.00 34.08 2.24
23 24 0.524414 CGGACACACCTCACGTATGA 59.476 55.000 0.00 0.00 36.31 2.15
24 25 0.457853 CCGGACACACCTCACGTATG 60.458 60.000 0.00 0.00 36.31 2.39
25 26 0.896940 ACCGGACACACCTCACGTAT 60.897 55.000 9.46 0.00 36.31 3.06
26 27 0.250684 TACCGGACACACCTCACGTA 60.251 55.000 9.46 0.00 36.31 3.57
27 28 1.529010 TACCGGACACACCTCACGT 60.529 57.895 9.46 0.00 36.31 4.49
28 29 1.080974 GTACCGGACACACCTCACG 60.081 63.158 9.46 0.00 36.31 4.35
29 30 0.606604 ATGTACCGGACACACCTCAC 59.393 55.000 9.46 0.00 42.17 3.51
30 31 1.344065 AATGTACCGGACACACCTCA 58.656 50.000 9.46 0.00 42.17 3.86
31 32 3.131577 TCATAATGTACCGGACACACCTC 59.868 47.826 9.46 0.00 42.17 3.85
32 33 3.101437 TCATAATGTACCGGACACACCT 58.899 45.455 9.46 5.60 42.17 4.00
33 34 3.454375 CTCATAATGTACCGGACACACC 58.546 50.000 9.46 0.00 42.17 4.16
34 35 2.864343 GCTCATAATGTACCGGACACAC 59.136 50.000 9.46 0.28 42.17 3.82
35 36 2.498078 TGCTCATAATGTACCGGACACA 59.502 45.455 9.46 12.72 42.17 3.72
36 37 2.864343 GTGCTCATAATGTACCGGACAC 59.136 50.000 9.46 6.19 42.17 3.67
37 38 2.159014 GGTGCTCATAATGTACCGGACA 60.159 50.000 9.46 9.04 43.97 4.02
38 39 2.102588 AGGTGCTCATAATGTACCGGAC 59.897 50.000 9.46 2.18 36.55 4.79
39 40 2.364324 GAGGTGCTCATAATGTACCGGA 59.636 50.000 9.46 0.00 36.55 5.14
40 41 2.365617 AGAGGTGCTCATAATGTACCGG 59.634 50.000 0.00 0.00 36.55 5.28
41 42 3.735237 AGAGGTGCTCATAATGTACCG 57.265 47.619 0.00 0.00 36.55 4.02
42 43 7.603024 GGTAATAAGAGGTGCTCATAATGTACC 59.397 40.741 0.00 0.00 32.06 3.34
43 44 8.148351 TGGTAATAAGAGGTGCTCATAATGTAC 58.852 37.037 0.00 0.00 32.06 2.90
44 45 8.257602 TGGTAATAAGAGGTGCTCATAATGTA 57.742 34.615 0.00 0.00 32.06 2.29
45 46 7.136822 TGGTAATAAGAGGTGCTCATAATGT 57.863 36.000 0.00 0.00 32.06 2.71
46 47 8.627208 AATGGTAATAAGAGGTGCTCATAATG 57.373 34.615 0.00 0.00 32.06 1.90
47 48 9.646522 AAAATGGTAATAAGAGGTGCTCATAAT 57.353 29.630 0.00 0.00 32.06 1.28
48 49 9.474313 AAAAATGGTAATAAGAGGTGCTCATAA 57.526 29.630 0.00 0.00 32.06 1.90
50 51 7.961326 AAAAATGGTAATAAGAGGTGCTCAT 57.039 32.000 0.00 0.00 32.06 2.90
71 72 7.307930 GGAACGAATAGTAAAGGTTCCGAAAAA 60.308 37.037 11.52 0.00 44.85 1.94
72 73 6.147656 GGAACGAATAGTAAAGGTTCCGAAAA 59.852 38.462 11.52 0.00 44.85 2.29
73 74 5.639082 GGAACGAATAGTAAAGGTTCCGAAA 59.361 40.000 11.52 0.00 44.85 3.46
74 75 5.170748 GGAACGAATAGTAAAGGTTCCGAA 58.829 41.667 11.52 0.00 44.85 4.30
75 76 4.747810 GGAACGAATAGTAAAGGTTCCGA 58.252 43.478 11.52 0.00 44.85 4.55
78 79 7.039882 TCATGAGGAACGAATAGTAAAGGTTC 58.960 38.462 0.00 0.00 37.00 3.62
79 80 6.942976 TCATGAGGAACGAATAGTAAAGGTT 58.057 36.000 0.00 0.00 0.00 3.50
80 81 6.540438 TCATGAGGAACGAATAGTAAAGGT 57.460 37.500 0.00 0.00 0.00 3.50
81 82 7.042335 ACTTCATGAGGAACGAATAGTAAAGG 58.958 38.462 12.40 0.00 0.00 3.11
82 83 9.751542 ATACTTCATGAGGAACGAATAGTAAAG 57.248 33.333 12.40 0.00 0.00 1.85
86 87 8.915036 AGTAATACTTCATGAGGAACGAATAGT 58.085 33.333 12.40 4.05 0.00 2.12
87 88 9.751542 AAGTAATACTTCATGAGGAACGAATAG 57.248 33.333 12.40 0.00 31.77 1.73
89 90 9.449719 AAAAGTAATACTTCATGAGGAACGAAT 57.550 29.630 12.40 0.00 37.47 3.34
90 91 8.842358 AAAAGTAATACTTCATGAGGAACGAA 57.158 30.769 12.40 0.00 37.47 3.85
91 92 8.311836 AGAAAAGTAATACTTCATGAGGAACGA 58.688 33.333 12.40 0.00 37.47 3.85
92 93 8.480643 AGAAAAGTAATACTTCATGAGGAACG 57.519 34.615 12.40 0.00 37.47 3.95
93 94 9.436957 TGAGAAAAGTAATACTTCATGAGGAAC 57.563 33.333 12.40 4.38 37.47 3.62
100 101 9.620259 GGAGGAATGAGAAAAGTAATACTTCAT 57.380 33.333 6.09 3.07 37.47 2.57
101 102 7.764443 CGGAGGAATGAGAAAAGTAATACTTCA 59.236 37.037 6.09 0.65 37.47 3.02
102 103 7.764901 ACGGAGGAATGAGAAAAGTAATACTTC 59.235 37.037 6.09 0.00 37.47 3.01
103 104 7.621796 ACGGAGGAATGAGAAAAGTAATACTT 58.378 34.615 0.00 0.00 40.80 2.24
104 105 7.184067 ACGGAGGAATGAGAAAAGTAATACT 57.816 36.000 0.00 0.00 0.00 2.12
105 106 7.764901 AGAACGGAGGAATGAGAAAAGTAATAC 59.235 37.037 0.00 0.00 0.00 1.89
106 107 7.848128 AGAACGGAGGAATGAGAAAAGTAATA 58.152 34.615 0.00 0.00 0.00 0.98
107 108 6.712276 AGAACGGAGGAATGAGAAAAGTAAT 58.288 36.000 0.00 0.00 0.00 1.89
108 109 6.110411 AGAACGGAGGAATGAGAAAAGTAA 57.890 37.500 0.00 0.00 0.00 2.24
109 110 5.740290 AGAACGGAGGAATGAGAAAAGTA 57.260 39.130 0.00 0.00 0.00 2.24
110 111 4.625607 AGAACGGAGGAATGAGAAAAGT 57.374 40.909 0.00 0.00 0.00 2.66
111 112 6.457528 GCAATAGAACGGAGGAATGAGAAAAG 60.458 42.308 0.00 0.00 0.00 2.27
112 113 5.354234 GCAATAGAACGGAGGAATGAGAAAA 59.646 40.000 0.00 0.00 0.00 2.29
113 114 4.876107 GCAATAGAACGGAGGAATGAGAAA 59.124 41.667 0.00 0.00 0.00 2.52
114 115 4.442706 GCAATAGAACGGAGGAATGAGAA 58.557 43.478 0.00 0.00 0.00 2.87
115 116 3.181465 GGCAATAGAACGGAGGAATGAGA 60.181 47.826 0.00 0.00 0.00 3.27
116 117 3.134458 GGCAATAGAACGGAGGAATGAG 58.866 50.000 0.00 0.00 0.00 2.90
117 118 2.503765 TGGCAATAGAACGGAGGAATGA 59.496 45.455 0.00 0.00 0.00 2.57
118 119 2.614057 GTGGCAATAGAACGGAGGAATG 59.386 50.000 0.00 0.00 0.00 2.67
119 120 2.505819 AGTGGCAATAGAACGGAGGAAT 59.494 45.455 0.00 0.00 0.00 3.01
120 121 1.906574 AGTGGCAATAGAACGGAGGAA 59.093 47.619 0.00 0.00 0.00 3.36
121 122 1.480954 GAGTGGCAATAGAACGGAGGA 59.519 52.381 0.00 0.00 0.00 3.71
122 123 1.473434 GGAGTGGCAATAGAACGGAGG 60.473 57.143 0.00 0.00 0.00 4.30
123 124 1.482593 AGGAGTGGCAATAGAACGGAG 59.517 52.381 0.00 0.00 0.00 4.63
124 125 1.568504 AGGAGTGGCAATAGAACGGA 58.431 50.000 0.00 0.00 0.00 4.69
125 126 2.483188 GGTAGGAGTGGCAATAGAACGG 60.483 54.545 0.00 0.00 0.00 4.44
126 127 2.798499 CGGTAGGAGTGGCAATAGAACG 60.798 54.545 0.00 0.00 0.00 3.95
127 128 2.429610 TCGGTAGGAGTGGCAATAGAAC 59.570 50.000 0.00 0.00 0.00 3.01
128 129 2.742348 TCGGTAGGAGTGGCAATAGAA 58.258 47.619 0.00 0.00 0.00 2.10
129 130 2.447408 TCGGTAGGAGTGGCAATAGA 57.553 50.000 0.00 0.00 0.00 1.98
130 131 2.028930 GGATCGGTAGGAGTGGCAATAG 60.029 54.545 0.00 0.00 0.00 1.73
131 132 1.968493 GGATCGGTAGGAGTGGCAATA 59.032 52.381 0.00 0.00 0.00 1.90
132 133 0.759346 GGATCGGTAGGAGTGGCAAT 59.241 55.000 0.00 0.00 0.00 3.56
133 134 0.616395 TGGATCGGTAGGAGTGGCAA 60.616 55.000 0.00 0.00 0.00 4.52
134 135 0.616395 TTGGATCGGTAGGAGTGGCA 60.616 55.000 0.00 0.00 0.00 4.92
135 136 0.179081 GTTGGATCGGTAGGAGTGGC 60.179 60.000 0.00 0.00 0.00 5.01
136 137 0.464452 GGTTGGATCGGTAGGAGTGG 59.536 60.000 0.00 0.00 0.00 4.00
137 138 1.409427 GAGGTTGGATCGGTAGGAGTG 59.591 57.143 0.00 0.00 0.00 3.51
138 139 1.288335 AGAGGTTGGATCGGTAGGAGT 59.712 52.381 0.00 0.00 0.00 3.85
139 140 2.074729 AGAGGTTGGATCGGTAGGAG 57.925 55.000 0.00 0.00 0.00 3.69
140 141 2.747467 CGTAGAGGTTGGATCGGTAGGA 60.747 54.545 0.00 0.00 0.00 2.94
141 142 1.607628 CGTAGAGGTTGGATCGGTAGG 59.392 57.143 0.00 0.00 0.00 3.18
142 143 1.001597 GCGTAGAGGTTGGATCGGTAG 60.002 57.143 0.00 0.00 0.00 3.18
143 144 1.027357 GCGTAGAGGTTGGATCGGTA 58.973 55.000 0.00 0.00 0.00 4.02
144 145 0.683504 AGCGTAGAGGTTGGATCGGT 60.684 55.000 0.00 0.00 0.00 4.69
145 146 1.267261 CTAGCGTAGAGGTTGGATCGG 59.733 57.143 0.00 0.00 0.00 4.18
146 147 1.948145 ACTAGCGTAGAGGTTGGATCG 59.052 52.381 0.00 0.00 0.00 3.69
147 148 4.023021 CCTTACTAGCGTAGAGGTTGGATC 60.023 50.000 0.00 0.00 0.00 3.36
148 149 3.890147 CCTTACTAGCGTAGAGGTTGGAT 59.110 47.826 0.00 0.00 0.00 3.41
149 150 3.285484 CCTTACTAGCGTAGAGGTTGGA 58.715 50.000 0.00 0.00 0.00 3.53
150 151 2.223758 GCCTTACTAGCGTAGAGGTTGG 60.224 54.545 0.00 0.00 31.82 3.77
151 152 2.426024 TGCCTTACTAGCGTAGAGGTTG 59.574 50.000 0.00 0.00 31.82 3.77
152 153 2.426381 GTGCCTTACTAGCGTAGAGGTT 59.574 50.000 0.00 0.00 31.82 3.50
153 154 2.022934 GTGCCTTACTAGCGTAGAGGT 58.977 52.381 0.00 0.00 31.82 3.85
154 155 2.291190 GAGTGCCTTACTAGCGTAGAGG 59.709 54.545 0.00 0.00 40.53 3.69
155 156 2.032722 CGAGTGCCTTACTAGCGTAGAG 60.033 54.545 0.00 0.00 40.53 2.43
156 157 1.938577 CGAGTGCCTTACTAGCGTAGA 59.061 52.381 0.00 0.00 40.53 2.59
157 158 1.938577 TCGAGTGCCTTACTAGCGTAG 59.061 52.381 0.00 0.00 40.53 3.51
158 159 2.028420 TCGAGTGCCTTACTAGCGTA 57.972 50.000 0.00 0.00 40.53 4.42
159 160 1.065701 CATCGAGTGCCTTACTAGCGT 59.934 52.381 0.00 0.00 40.53 5.07
160 161 1.759994 CATCGAGTGCCTTACTAGCG 58.240 55.000 0.00 0.00 40.53 4.26
171 172 2.220224 CGAGTGAGCGCATCGAGTG 61.220 63.158 11.47 0.00 38.72 3.51
172 173 2.101185 CGAGTGAGCGCATCGAGT 59.899 61.111 11.47 0.00 38.72 4.18
180 181 2.887568 GGATGTGGCGAGTGAGCG 60.888 66.667 0.00 0.00 38.18 5.03
181 182 2.512515 GGGATGTGGCGAGTGAGC 60.513 66.667 0.00 0.00 0.00 4.26
182 183 0.742281 CAAGGGATGTGGCGAGTGAG 60.742 60.000 0.00 0.00 0.00 3.51
183 184 1.296392 CAAGGGATGTGGCGAGTGA 59.704 57.895 0.00 0.00 0.00 3.41
184 185 2.401766 GCAAGGGATGTGGCGAGTG 61.402 63.158 0.00 0.00 0.00 3.51
185 186 2.045926 GCAAGGGATGTGGCGAGT 60.046 61.111 0.00 0.00 0.00 4.18
186 187 2.825836 GGCAAGGGATGTGGCGAG 60.826 66.667 0.00 0.00 0.00 5.03
187 188 3.329542 GAGGCAAGGGATGTGGCGA 62.330 63.158 0.00 0.00 45.70 5.54
188 189 2.825836 GAGGCAAGGGATGTGGCG 60.826 66.667 0.00 0.00 45.70 5.69
189 190 1.452833 GAGAGGCAAGGGATGTGGC 60.453 63.158 0.00 0.00 41.67 5.01
190 191 1.225704 GGAGAGGCAAGGGATGTGG 59.774 63.158 0.00 0.00 0.00 4.17
191 192 1.153289 CGGAGAGGCAAGGGATGTG 60.153 63.158 0.00 0.00 0.00 3.21
192 193 0.692419 ATCGGAGAGGCAAGGGATGT 60.692 55.000 0.00 0.00 43.63 3.06
193 194 0.250209 CATCGGAGAGGCAAGGGATG 60.250 60.000 0.00 0.00 43.63 3.51
194 195 0.692419 ACATCGGAGAGGCAAGGGAT 60.692 55.000 0.00 0.00 45.05 3.85
195 196 0.032515 TACATCGGAGAGGCAAGGGA 60.033 55.000 0.00 0.00 45.05 4.20
196 197 0.830648 TTACATCGGAGAGGCAAGGG 59.169 55.000 0.00 0.00 45.05 3.95
197 198 1.207089 TGTTACATCGGAGAGGCAAGG 59.793 52.381 0.00 0.00 45.05 3.61
198 199 2.271800 GTGTTACATCGGAGAGGCAAG 58.728 52.381 0.00 0.00 45.05 4.01
199 200 1.066430 GGTGTTACATCGGAGAGGCAA 60.066 52.381 0.00 0.00 45.05 4.52
200 201 0.535335 GGTGTTACATCGGAGAGGCA 59.465 55.000 0.00 0.00 45.05 4.75
201 202 0.824759 AGGTGTTACATCGGAGAGGC 59.175 55.000 0.00 0.00 45.05 4.70
203 204 2.159226 GGTCAGGTGTTACATCGGAGAG 60.159 54.545 0.00 0.00 43.63 3.20
204 205 1.822990 GGTCAGGTGTTACATCGGAGA 59.177 52.381 0.00 0.00 45.75 3.71
205 206 1.548719 TGGTCAGGTGTTACATCGGAG 59.451 52.381 0.00 0.00 0.00 4.63
206 207 1.634960 TGGTCAGGTGTTACATCGGA 58.365 50.000 0.00 0.00 0.00 4.55
207 208 2.279741 CATGGTCAGGTGTTACATCGG 58.720 52.381 0.00 0.00 0.00 4.18
208 209 2.093711 TCCATGGTCAGGTGTTACATCG 60.094 50.000 12.58 0.00 0.00 3.84
209 210 3.197766 TCTCCATGGTCAGGTGTTACATC 59.802 47.826 12.58 0.00 0.00 3.06
210 211 3.181329 TCTCCATGGTCAGGTGTTACAT 58.819 45.455 12.58 0.00 0.00 2.29
211 212 2.615391 TCTCCATGGTCAGGTGTTACA 58.385 47.619 12.58 0.00 0.00 2.41
212 213 3.197766 TCATCTCCATGGTCAGGTGTTAC 59.802 47.826 12.58 0.00 0.00 2.50
213 214 3.449918 TCATCTCCATGGTCAGGTGTTA 58.550 45.455 12.58 0.00 0.00 2.41
214 215 2.269023 TCATCTCCATGGTCAGGTGTT 58.731 47.619 12.58 0.00 0.00 3.32
215 216 1.956869 TCATCTCCATGGTCAGGTGT 58.043 50.000 12.58 0.00 0.00 4.16
216 217 2.486727 CCATCATCTCCATGGTCAGGTG 60.487 54.545 12.58 9.55 36.74 4.00
217 218 1.773052 CCATCATCTCCATGGTCAGGT 59.227 52.381 12.58 0.00 36.74 4.00
218 219 2.038689 CTCCATCATCTCCATGGTCAGG 59.961 54.545 12.58 5.79 41.59 3.86
219 220 2.550423 GCTCCATCATCTCCATGGTCAG 60.550 54.545 12.58 2.42 41.59 3.51
220 221 1.419012 GCTCCATCATCTCCATGGTCA 59.581 52.381 12.58 0.00 41.59 4.02
221 222 1.698532 AGCTCCATCATCTCCATGGTC 59.301 52.381 12.58 0.00 41.59 4.02
222 223 1.698532 GAGCTCCATCATCTCCATGGT 59.301 52.381 12.58 0.00 41.59 3.55
223 224 1.337917 CGAGCTCCATCATCTCCATGG 60.338 57.143 4.97 4.97 42.16 3.66
224 225 1.337917 CCGAGCTCCATCATCTCCATG 60.338 57.143 8.47 0.00 0.00 3.66
225 226 0.975135 CCGAGCTCCATCATCTCCAT 59.025 55.000 8.47 0.00 0.00 3.41
226 227 0.397675 ACCGAGCTCCATCATCTCCA 60.398 55.000 8.47 0.00 0.00 3.86
227 228 0.033228 CACCGAGCTCCATCATCTCC 59.967 60.000 8.47 0.00 0.00 3.71
228 229 1.035923 TCACCGAGCTCCATCATCTC 58.964 55.000 8.47 0.00 0.00 2.75
229 230 1.411977 CTTCACCGAGCTCCATCATCT 59.588 52.381 8.47 0.00 0.00 2.90
230 231 1.539929 CCTTCACCGAGCTCCATCATC 60.540 57.143 8.47 0.00 0.00 2.92
231 232 0.467384 CCTTCACCGAGCTCCATCAT 59.533 55.000 8.47 0.00 0.00 2.45
232 233 0.904865 ACCTTCACCGAGCTCCATCA 60.905 55.000 8.47 0.00 0.00 3.07
233 234 0.250513 AACCTTCACCGAGCTCCATC 59.749 55.000 8.47 0.00 0.00 3.51
234 235 0.036010 CAACCTTCACCGAGCTCCAT 60.036 55.000 8.47 0.00 0.00 3.41
235 236 1.371183 CAACCTTCACCGAGCTCCA 59.629 57.895 8.47 0.00 0.00 3.86
236 237 0.670854 GACAACCTTCACCGAGCTCC 60.671 60.000 8.47 0.00 0.00 4.70
237 238 0.033504 TGACAACCTTCACCGAGCTC 59.966 55.000 2.73 2.73 0.00 4.09
238 239 2.133195 TGACAACCTTCACCGAGCT 58.867 52.632 0.00 0.00 0.00 4.09
239 240 4.771127 TGACAACCTTCACCGAGC 57.229 55.556 0.00 0.00 0.00 5.03
555 556 4.772886 ATGACCATACTACCCTTTGACC 57.227 45.455 0.00 0.00 0.00 4.02
558 559 5.357032 GTGGAAATGACCATACTACCCTTTG 59.643 44.000 0.00 0.00 42.17 2.77
596 597 4.872691 CGAAGAATCAAGCCTAATGACACT 59.127 41.667 0.00 0.00 0.00 3.55
597 598 4.870426 TCGAAGAATCAAGCCTAATGACAC 59.130 41.667 0.00 0.00 0.00 3.67
598 599 5.084818 TCGAAGAATCAAGCCTAATGACA 57.915 39.130 0.00 0.00 0.00 3.58
609 610 7.381948 CCACATTTCATTGTTTCGAAGAATCAA 59.618 33.333 0.00 8.21 45.90 2.57
631 632 1.028130 TTTCATCTTTGCGTGCCACA 58.972 45.000 0.00 0.00 0.00 4.17
632 633 1.268999 TGTTTCATCTTTGCGTGCCAC 60.269 47.619 0.00 0.00 0.00 5.01
633 634 1.028130 TGTTTCATCTTTGCGTGCCA 58.972 45.000 0.00 0.00 0.00 4.92
634 635 2.253603 GATGTTTCATCTTTGCGTGCC 58.746 47.619 2.92 0.00 0.00 5.01
636 637 3.557577 TGGATGTTTCATCTTTGCGTG 57.442 42.857 9.16 0.00 0.00 5.34
637 638 4.022068 ACATTGGATGTTTCATCTTTGCGT 60.022 37.500 9.16 0.30 41.63 5.24
638 639 4.325204 CACATTGGATGTTTCATCTTTGCG 59.675 41.667 9.16 0.00 42.70 4.85
698 704 8.415950 ACCACTTTGTACATTTGAATTGGATA 57.584 30.769 16.88 0.00 0.00 2.59
706 712 7.283354 TGACACAATACCACTTTGTACATTTGA 59.717 33.333 0.00 0.00 35.61 2.69
740 746 9.041354 GGTAATAAAGTGGGAGATCAGAGATAT 57.959 37.037 0.00 0.00 0.00 1.63
743 749 6.202331 TGGTAATAAAGTGGGAGATCAGAGA 58.798 40.000 0.00 0.00 0.00 3.10
764 773 7.997773 TTATACGAGTAGATAGATGCTTGGT 57.002 36.000 0.00 0.00 0.00 3.67
790 799 6.293407 GCAGAAGTGCGCCTATATAAAATGAA 60.293 38.462 4.18 0.00 40.71 2.57
812 821 0.675837 TTAAGCAGGAGCAGCAGCAG 60.676 55.000 3.17 0.00 45.49 4.24
829 838 3.684305 CGGCCGATCAATGCTATGATTTA 59.316 43.478 24.07 0.00 40.08 1.40
848 857 3.495001 CGAATATCTTTTCCTCTTCCGGC 59.505 47.826 0.00 0.00 0.00 6.13
915 924 0.608640 GCGGGATCAGGGACGATAAT 59.391 55.000 0.00 0.00 0.00 1.28
916 925 1.469335 GGCGGGATCAGGGACGATAA 61.469 60.000 0.00 0.00 0.00 1.75
917 926 1.906824 GGCGGGATCAGGGACGATA 60.907 63.158 0.00 0.00 0.00 2.92
933 942 1.471676 CCATCCTACTCTGTGAACGGC 60.472 57.143 0.00 0.00 0.00 5.68
941 950 1.483827 TGCTGCTTCCATCCTACTCTG 59.516 52.381 0.00 0.00 0.00 3.35
948 964 3.207669 CGGCTGCTGCTTCCATCC 61.208 66.667 15.64 0.00 39.59 3.51
1473 2062 3.682292 GATCCACCTGGGCACGACC 62.682 68.421 0.00 0.00 36.21 4.79
1536 2128 3.214250 GAAGAGGGCGGCGATCGAT 62.214 63.158 21.57 0.00 42.43 3.59
1657 2250 2.990479 GGTGAGGAGGGCGAACAT 59.010 61.111 0.00 0.00 0.00 2.71
1725 2318 3.274586 CCGTCCTCGTCGGCGATA 61.275 66.667 14.65 0.43 46.80 2.92
1836 2465 2.413351 GCGAGCTCGTGCAGGATA 59.587 61.111 34.46 0.00 42.74 2.59
1926 2555 1.683790 CGTCCTTGATGGCGTCGTTC 61.684 60.000 1.67 0.00 35.26 3.95
1936 2574 0.674895 GGCAGCAGTTCGTCCTTGAT 60.675 55.000 0.00 0.00 0.00 2.57
1940 2578 4.379243 CGGGCAGCAGTTCGTCCT 62.379 66.667 0.00 0.00 0.00 3.85
2113 2754 2.357034 GAGCACGAACGGGAGCAA 60.357 61.111 0.00 0.00 0.00 3.91
2160 2801 4.698625 ACGCCGACCCCCTTCTCT 62.699 66.667 0.00 0.00 0.00 3.10
2253 2894 2.352032 CGCCTTCCCTTCCTCGTCT 61.352 63.158 0.00 0.00 0.00 4.18
2319 2963 0.806102 CAATGTACGTCTCCTGCCGG 60.806 60.000 0.00 0.00 0.00 6.13
2412 3056 1.538512 CTCACTCGAGTTCGGTAACCA 59.461 52.381 17.26 0.00 40.29 3.67
2418 3062 1.391485 CAAATGCTCACTCGAGTTCGG 59.609 52.381 17.26 9.92 41.71 4.30
2420 3064 3.321497 AGACAAATGCTCACTCGAGTTC 58.679 45.455 17.26 7.69 41.71 3.01
2423 3067 4.505922 GGAATAGACAAATGCTCACTCGAG 59.494 45.833 11.84 11.84 42.66 4.04
2441 3085 4.087182 GGAGGGAGTACATCGATGGAATA 58.913 47.826 28.09 10.02 0.00 1.75
2444 3088 1.818131 CGGAGGGAGTACATCGATGGA 60.818 57.143 28.09 19.00 0.00 3.41
2445 3089 0.598562 CGGAGGGAGTACATCGATGG 59.401 60.000 28.09 11.30 0.00 3.51
2460 3104 7.953752 AGAAAGACTTATATTTAGGACCGGAG 58.046 38.462 9.46 0.00 0.00 4.63
2461 3105 7.909485 AGAAAGACTTATATTTAGGACCGGA 57.091 36.000 9.46 0.00 0.00 5.14
2462 3106 9.075678 TCTAGAAAGACTTATATTTAGGACCGG 57.924 37.037 0.00 0.00 0.00 5.28
2476 3120 9.702253 TCTGTAGTGGAATATCTAGAAAGACTT 57.298 33.333 0.00 0.00 33.57 3.01
2477 3121 9.127277 GTCTGTAGTGGAATATCTAGAAAGACT 57.873 37.037 0.00 0.00 33.57 3.24
2490 3134 7.447545 TGCTTCGTATATAGTCTGTAGTGGAAT 59.552 37.037 0.00 0.00 0.00 3.01
2491 3135 6.769341 TGCTTCGTATATAGTCTGTAGTGGAA 59.231 38.462 0.00 0.00 0.00 3.53
2492 3136 6.293698 TGCTTCGTATATAGTCTGTAGTGGA 58.706 40.000 0.00 0.00 0.00 4.02
2493 3137 6.555812 TGCTTCGTATATAGTCTGTAGTGG 57.444 41.667 0.00 0.00 0.00 4.00
2494 3138 8.851960 TTTTGCTTCGTATATAGTCTGTAGTG 57.148 34.615 0.00 0.00 0.00 2.74
2509 3153 8.784043 AGTTTAGATTCACTTATTTTGCTTCGT 58.216 29.630 0.00 0.00 0.00 3.85
2510 3154 9.267096 GAGTTTAGATTCACTTATTTTGCTTCG 57.733 33.333 0.00 0.00 0.00 3.79
2550 3194 9.689501 TCAATGTGGACTACGTATGGATATATA 57.310 33.333 0.00 0.00 0.00 0.86
2551 3195 8.589701 TCAATGTGGACTACGTATGGATATAT 57.410 34.615 0.00 0.00 0.00 0.86
2552 3196 8.411991 TTCAATGTGGACTACGTATGGATATA 57.588 34.615 0.00 0.00 0.00 0.86
2553 3197 6.911250 TCAATGTGGACTACGTATGGATAT 57.089 37.500 0.00 0.00 0.00 1.63
2554 3198 6.718522 TTCAATGTGGACTACGTATGGATA 57.281 37.500 0.00 0.00 0.00 2.59
2555 3199 5.607939 TTCAATGTGGACTACGTATGGAT 57.392 39.130 0.00 0.00 0.00 3.41
2556 3200 5.408880 TTTCAATGTGGACTACGTATGGA 57.591 39.130 0.00 0.00 0.00 3.41
2557 3201 6.049149 AGATTTCAATGTGGACTACGTATGG 58.951 40.000 0.00 0.00 0.00 2.74
2558 3202 6.980978 AGAGATTTCAATGTGGACTACGTATG 59.019 38.462 0.00 0.00 0.00 2.39
2559 3203 7.113658 AGAGATTTCAATGTGGACTACGTAT 57.886 36.000 0.00 0.00 0.00 3.06
2560 3204 6.525578 AGAGATTTCAATGTGGACTACGTA 57.474 37.500 0.00 0.00 0.00 3.57
2561 3205 5.407407 AGAGATTTCAATGTGGACTACGT 57.593 39.130 0.00 0.00 0.00 3.57
2562 3206 7.827819 TTTAGAGATTTCAATGTGGACTACG 57.172 36.000 0.00 0.00 0.00 3.51
2565 3209 8.787852 GTCTTTTTAGAGATTTCAATGTGGACT 58.212 33.333 0.00 0.00 0.00 3.85
2566 3210 8.787852 AGTCTTTTTAGAGATTTCAATGTGGAC 58.212 33.333 0.00 0.00 0.00 4.02
2567 3211 8.924511 AGTCTTTTTAGAGATTTCAATGTGGA 57.075 30.769 0.00 0.00 0.00 4.02
2585 3229 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
2586 3230 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
2587 3231 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
2588 3232 8.855804 TTCCCTCTGTTCCTAAATATAAGTCT 57.144 34.615 0.00 0.00 0.00 3.24
2591 3235 9.945904 GGTATTCCCTCTGTTCCTAAATATAAG 57.054 37.037 0.00 0.00 0.00 1.73
2592 3236 9.684702 AGGTATTCCCTCTGTTCCTAAATATAA 57.315 33.333 0.00 0.00 40.71 0.98
2594 3238 9.684702 TTAGGTATTCCCTCTGTTCCTAAATAT 57.315 33.333 0.00 0.00 44.81 1.28
2595 3239 9.684702 ATTAGGTATTCCCTCTGTTCCTAAATA 57.315 33.333 0.00 0.00 44.81 1.40
2596 3240 8.582891 ATTAGGTATTCCCTCTGTTCCTAAAT 57.417 34.615 0.00 0.00 44.81 1.40
2597 3241 9.510062 TTATTAGGTATTCCCTCTGTTCCTAAA 57.490 33.333 0.00 0.00 44.81 1.85
2598 3242 9.684702 ATTATTAGGTATTCCCTCTGTTCCTAA 57.315 33.333 0.00 0.00 44.81 2.69
2599 3243 9.322769 GATTATTAGGTATTCCCTCTGTTCCTA 57.677 37.037 0.00 0.00 44.81 2.94
2600 3244 7.237887 GGATTATTAGGTATTCCCTCTGTTCCT 59.762 40.741 0.00 0.00 44.81 3.36
2601 3245 7.017254 TGGATTATTAGGTATTCCCTCTGTTCC 59.983 40.741 0.00 0.00 44.81 3.62
2602 3246 7.974504 TGGATTATTAGGTATTCCCTCTGTTC 58.025 38.462 0.00 0.00 44.81 3.18
2603 3247 7.794683 TCTGGATTATTAGGTATTCCCTCTGTT 59.205 37.037 0.00 0.00 44.81 3.16
2604 3248 7.235812 GTCTGGATTATTAGGTATTCCCTCTGT 59.764 40.741 0.00 0.00 44.81 3.41
2605 3249 7.577807 CGTCTGGATTATTAGGTATTCCCTCTG 60.578 44.444 0.00 0.00 44.81 3.35
2606 3250 6.437793 CGTCTGGATTATTAGGTATTCCCTCT 59.562 42.308 0.00 0.00 44.81 3.69
2607 3251 6.436532 TCGTCTGGATTATTAGGTATTCCCTC 59.563 42.308 0.00 0.00 44.81 4.30
2609 3253 6.600882 TCGTCTGGATTATTAGGTATTCCC 57.399 41.667 0.00 0.00 33.67 3.97
2610 3254 7.097834 CCTTCGTCTGGATTATTAGGTATTCC 58.902 42.308 0.00 0.00 34.70 3.01
2611 3255 7.039223 TCCCTTCGTCTGGATTATTAGGTATTC 60.039 40.741 0.00 0.00 0.00 1.75
2612 3256 6.785963 TCCCTTCGTCTGGATTATTAGGTATT 59.214 38.462 0.00 0.00 0.00 1.89
2613 3257 6.320518 TCCCTTCGTCTGGATTATTAGGTAT 58.679 40.000 0.00 0.00 0.00 2.73
2616 3260 4.589374 ACTCCCTTCGTCTGGATTATTAGG 59.411 45.833 0.00 0.00 0.00 2.69
2617 3261 5.793030 ACTCCCTTCGTCTGGATTATTAG 57.207 43.478 0.00 0.00 0.00 1.73
2620 3264 7.455008 ACAATATACTCCCTTCGTCTGGATTAT 59.545 37.037 0.00 0.00 32.92 1.28
2622 3266 5.602978 ACAATATACTCCCTTCGTCTGGATT 59.397 40.000 0.00 0.00 0.00 3.01
2625 3269 4.939052 ACAATATACTCCCTTCGTCTGG 57.061 45.455 0.00 0.00 0.00 3.86
2626 3270 6.039493 ACAGTACAATATACTCCCTTCGTCTG 59.961 42.308 0.00 0.00 0.00 3.51
2628 3272 6.388435 ACAGTACAATATACTCCCTTCGTC 57.612 41.667 0.00 0.00 0.00 4.20
2629 3273 9.750783 ATATACAGTACAATATACTCCCTTCGT 57.249 33.333 0.00 0.00 0.00 3.85
2634 3278 8.750298 ACAGCATATACAGTACAATATACTCCC 58.250 37.037 0.00 0.00 0.00 4.30
2650 3294 9.529325 TTCACTCATACAAAGTACAGCATATAC 57.471 33.333 0.00 0.00 0.00 1.47
2654 3298 7.744087 TTTTCACTCATACAAAGTACAGCAT 57.256 32.000 0.00 0.00 0.00 3.79
2658 3302 8.669946 TCACATTTTCACTCATACAAAGTACA 57.330 30.769 0.00 0.00 0.00 2.90
2659 3303 9.944663 TTTCACATTTTCACTCATACAAAGTAC 57.055 29.630 0.00 0.00 0.00 2.73
2672 4191 7.538303 AGTTTTCACCATTTCACATTTTCAC 57.462 32.000 0.00 0.00 0.00 3.18
2782 4304 7.294017 ACTCAAATAAATCATATGGCCTTGG 57.706 36.000 3.32 0.00 0.00 3.61
2784 4306 8.004215 TGGTACTCAAATAAATCATATGGCCTT 58.996 33.333 3.32 0.00 0.00 4.35
2802 4326 6.088541 ACCTTACCTCTTAGATGGTACTCA 57.911 41.667 9.13 0.00 37.74 3.41
2804 4328 7.650660 AGTAACCTTACCTCTTAGATGGTACT 58.349 38.462 9.13 4.12 37.74 2.73
2805 4329 7.894753 AGTAACCTTACCTCTTAGATGGTAC 57.105 40.000 9.13 0.00 37.74 3.34
2806 4330 9.638176 CTTAGTAACCTTACCTCTTAGATGGTA 57.362 37.037 6.52 6.52 37.74 3.25
2807 4331 8.121185 ACTTAGTAACCTTACCTCTTAGATGGT 58.879 37.037 8.09 8.09 40.12 3.55
2808 4332 8.536340 ACTTAGTAACCTTACCTCTTAGATGG 57.464 38.462 0.00 0.00 34.19 3.51
2809 4333 9.804758 CAACTTAGTAACCTTACCTCTTAGATG 57.195 37.037 0.00 0.00 34.19 2.90
2810 4334 8.979534 CCAACTTAGTAACCTTACCTCTTAGAT 58.020 37.037 0.00 0.00 34.19 1.98
2856 4529 3.255642 CCGGGGGCAATTATATTTGTCTG 59.744 47.826 10.77 5.95 31.84 3.51
2859 4532 3.603965 TCCGGGGGCAATTATATTTGT 57.396 42.857 0.00 0.00 0.00 2.83
2864 4537 1.479757 GCCTTTCCGGGGGCAATTATA 60.480 52.381 22.59 0.00 46.84 0.98
2866 4539 1.380650 GCCTTTCCGGGGGCAATTA 60.381 57.895 22.59 0.00 46.84 1.40
2876 4550 6.808008 ATATTATTCATCAGTGCCTTTCCG 57.192 37.500 0.00 0.00 0.00 4.30
2907 4581 7.960738 TCGTGCAATTTACATTTAGCTAAAGTC 59.039 33.333 22.55 9.36 0.00 3.01
2966 4642 6.721208 ACACCACATATCTTGACAAAGGAATT 59.279 34.615 0.00 0.00 33.90 2.17
3015 4722 4.341806 TCAGAAATTTGAGCCAAAAGAGCA 59.658 37.500 0.00 0.00 36.90 4.26
3019 4726 6.044682 ACAAGTCAGAAATTTGAGCCAAAAG 58.955 36.000 0.00 0.00 36.90 2.27
3028 4735 4.262164 CCCAAGGGACAAGTCAGAAATTTG 60.262 45.833 0.00 0.00 37.50 2.32
3029 4736 3.897505 CCCAAGGGACAAGTCAGAAATTT 59.102 43.478 0.00 0.00 37.50 1.82
3035 4742 1.303643 GGCCCAAGGGACAAGTCAG 60.304 63.158 9.92 0.00 44.50 3.51
3072 4779 3.746492 GCAATGAGTAACGGTCTTCAAGT 59.254 43.478 0.00 0.00 0.00 3.16
3080 4787 2.579410 AAAGGGCAATGAGTAACGGT 57.421 45.000 0.00 0.00 0.00 4.83
3101 4811 5.869753 AAGCTAAACACATGCTAACAGAG 57.130 39.130 0.00 0.00 35.85 3.35
3355 5075 4.725790 AGAAAGAATTAGTGGCATTGGC 57.274 40.909 2.73 2.73 40.13 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.